Citrus Sinensis ID: 004791
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 730 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LSL9 | 915 | Pentatricopeptide repeat- | yes | no | 0.942 | 0.751 | 0.572 | 0.0 | |
| Q9SFV9 | 880 | Pentatricopeptide repeat- | no | no | 0.887 | 0.736 | 0.362 | 1e-126 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.741 | 0.881 | 0.327 | 7e-83 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.912 | 0.875 | 0.291 | 9e-81 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.739 | 0.857 | 0.321 | 1e-80 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.743 | 0.856 | 0.327 | 1e-80 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.839 | 0.839 | 0.285 | 4e-80 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.738 | 0.964 | 0.329 | 5e-80 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.880 | 0.852 | 0.289 | 1e-79 | |
| Q9SH26 | 577 | Pentatricopeptide repeat- | no | no | 0.668 | 0.845 | 0.336 | 3e-79 |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/694 (57%), Positives = 511/694 (73%), Gaps = 6/694 (0%)
Query: 21 LNKYPFCKSSSI-SSLPLPLDPDPPDLPSQIFTILSTHPTTWQRHTSITKLIPLLSPSHI 79
+ + FC S + +LP + D +P ++ +ILS W + S+ ++ +SPSH+
Sbjct: 37 VTRRQFCSVSPLLRNLPEE-ESDSMSVPHRLLSILSK--PNWHKSPSLKSMVSAISPSHV 93
Query: 80 SSLFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSC 139
SSLFSLDL+P+TAL+FS+WISQ P +KHSV SY+SLL LLI N + KI LM+KSC
Sbjct: 94 SSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSC 153
Query: 140 SLDKEILFVLDFLRRVNESGS-EFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNM 198
+ L+VLD R++N+ E KL + YNTLL L++F LVDEMK+VY+EML++
Sbjct: 154 DSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDK 213
Query: 199 VVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGF 258
V PNIYT+N M+NG CK+GNV EA YVSKIV+AGL PD FTYTSLI+GYC+ KD++ F
Sbjct: 214 VCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAF 273
Query: 259 RVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGL 318
+VF MP KGCRRNEV+YT+LIHGLC A+R+DEA+DLF +M +D+C PTVRTYTV+I L
Sbjct: 274 KVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Query: 319 CRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNV 378
C RKSEAL EM G +PN+HTYTVLID LC + K ++A ELL +MLEKGL PNV
Sbjct: 334 CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393
Query: 379 VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNE 438
+TYNALI+GYCK G++E A+ +++LM+S SPN RTYNELI G+CK NVH+AM +LN+
Sbjct: 394 ITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNK 452
Query: 439 LLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGR 498
+LE+ + P ++TYNSLI GQCR G+ DSAY++L L+N+ GLVPDQ+TY+ ID+LCK R
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512
Query: 499 VEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNA 558
VEEA LFDSLE+KG+ V+YTALIDGYCK GK+D+AH +LE+MLS +CLPNS T+NA
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNA 572
Query: 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG 618
LI GL + K++EA LL EKM K+G++PTV T TILI +LK+GDFDHA+ QM+S G
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632
Query: 619 LKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAF 678
KPD +TYT FIQ YC G+L +AED++ KM G+ PD TY+ LI Y LG AF
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAF 692
Query: 679 DVLKRMFDAGCEPSHHTYAFLIKHLSNKKVDERK 712
DVLKRM D GCEPS HT+ LIKHL K ++K
Sbjct: 693 DVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQK 726
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust.
Identities = 240/662 (36%), Positives = 391/662 (59%), Gaps = 14/662 (2%)
Query: 61 WQRHTSITKLIPLLSPSHISSLFSLDLNPQ-TALDFSYWISQKPGFKHSVESYSSLLNLL 119
W++++S+ L+ ++P+ S + SL + + F W+ + + + LL L+
Sbjct: 54 WEKNSSLKSLVSHMNPNVASQVISLQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLKLI 113
Query: 120 IRNNFTKASEKIVFLMLKSCS-LDKEIL---FVLDFLRRVNESGSEFSLKLSVKGYNTLL 175
+ + + + ++ ++K CS +KE+L + D LR V F +L+ Y++LL
Sbjct: 114 VSSGLYRVAHAVIVALIKECSRCEKEMLKLMYCFDELREV------FGFRLNYPCYSSLL 167
Query: 176 MQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLS 235
M L+K L Y M + V + + T++N CK G AE+++SKI++ G
Sbjct: 168 MSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFV 227
Query: 236 PDTFTYTSLILGYCRNKDVEKGFRVFMMMPKK-GCRRNEVSYTNLIHGLCEAKRVDEALD 294
D+ TSL+LG+CR ++ +VF +M K+ C N VSY+ LIHGLCE R++EA
Sbjct: 228 LDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFG 287
Query: 295 LFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLC 354
L +MGE C+P+ RTYTV+I LC G +A F+EM RGC+PNVHTYTVLID LC
Sbjct: 288 LKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLC 347
Query: 355 KENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNAR 414
++ K++EA+ + +M++ +FP+V+TYNALI+GYCK+G + A ++L +M+ C PN R
Sbjct: 348 RDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVR 407
Query: 415 TYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLI 474
T+NEL+ G C+ ++A+ LL +L+ LSP +++YN LI G CREGH+++AYK+L +
Sbjct: 408 TFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSM 467
Query: 475 NESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKI 534
N + PD T++ I+ CK+G+ + A + +KGI EV T LIDG CK GK
Sbjct: 468 NCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKT 527
Query: 535 DDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTIL 594
DA +LE ++ L ++ N ++D L + KV+E L ++ K+ K+G+ P+V TYT L
Sbjct: 528 RDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTL 587
Query: 595 IEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGI 654
++ +++ GD + R+L+ M G P+VY YT I C G+++EAE L+ M G+
Sbjct: 588 VDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGV 647
Query: 655 VPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKH--LSNKKVDERK 712
P+ VTYT+++ Y + G + A + ++ M + G E + Y+ L++ LS K +D +
Sbjct: 648 SPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSE 707
Query: 713 QQ 714
+
Sbjct: 708 ES 709
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (790), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 180/550 (32%), Positives = 285/550 (51%), Gaps = 9/550 (1%)
Query: 161 EFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVG 220
EFS LS + ++ KF LV +E+L V N+YT+N MIN C+ +
Sbjct: 67 EFSKLLSA------IAKMKKFDLVISFGE-KMEILG--VSHNLYTYNIMINCLCRRSQLS 117
Query: 221 EAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLI 280
A + K+++ G P T SL+ G+C + + + M + G + + V++T L+
Sbjct: 118 FALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLV 177
Query: 281 HGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE 340
HGL + + EA+ L RM C+P + TY VI GLC+ G AL N+M E
Sbjct: 178 HGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 237
Query: 341 PNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQI 400
+V Y+ +ID LCK VD+A L M KG+ P+V TY++LI C G A ++
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297
Query: 401 LDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCR 460
L M +PN T+N LI F K + A L +E++++++ P ++TYNSLI G C
Sbjct: 298 LSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCM 357
Query: 461 EGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVI 520
LD A ++ L+ +PD TY+ I+ CK +V + LF + ++G+ V
Sbjct: 358 HDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVT 417
Query: 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMT 580
YT LI G+ + D+A + ++M+SD PN TYN L+DGL + K+++A+++ E +
Sbjct: 418 YTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 477
Query: 581 KMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640
K ++P +YTY I+ E + K G + L + G+KPDV Y I +C G +
Sbjct: 478 KSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKE 537
Query: 641 EAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLI 700
EA L +KM +G +PDS TY LI A+ G ++ +++K M TY +
Sbjct: 538 EAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVT 597
Query: 701 KHLSNKKVDE 710
L + ++D+
Sbjct: 598 DMLHDGRLDK 607
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 212/728 (29%), Positives = 342/728 (46%), Gaps = 62/728 (8%)
Query: 6 PAAIFTAFTKSPGQFLNKYPFCKSSSISSLPLPLDPDPPDLPSQIFTILSTHPTTWQRHT 65
P FT+F + +YPF S S+ D D + H W
Sbjct: 51 PFVWFTSFL-----CIIRYPFVTKSGTSTYSEDFDRD--------WIRKVVHNDLWD-DP 96
Query: 66 SITKLIPL-LSPSHISS-LFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNN 123
+ KL L L+P + L L +P+ A F W + GFKHSVESY + ++L
Sbjct: 97 GLEKLFDLTLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCAR 156
Query: 124 FTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESG------------------------ 159
+ ++ M+ S D ++ VL R V G
Sbjct: 157 MYYDANSVLKEMVLS-KADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCF 215
Query: 160 ---SEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKV 216
F + + N LL + +K D++KR + +M+ P ++T+N MI+ CK
Sbjct: 216 SKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKE 275
Query: 217 GNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSY 276
G+V A ++ GL PDT TY S+I G+ + ++ F M C + ++Y
Sbjct: 276 GDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITY 335
Query: 277 TNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA 336
LI+ C+ ++ L+ +R M + +P V +Y+ ++ C+ G +A++F+ +M
Sbjct: 336 NALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRR 395
Query: 337 RGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA 396
G PN +TYT LID CK + +A L N ML+ G+ NVVTY ALIDG C M+
Sbjct: 396 VGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKE 455
Query: 397 ALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIY 456
A ++ M + PN +YN LI GF K KN+ RA+ LLNEL + + P L+ Y + I+
Sbjct: 456 AEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIW 515
Query: 457 GQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKA 516
G C +++A V++ + E G+ + Y+ +D K G E L D +++ I+
Sbjct: 516 GLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEV 575
Query: 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCL-PNSYTYNALIDGLYRERKVQEALLL 575
V + LIDG CK + A R+ +D L N+ + A+IDGL ++ +V+ A L
Sbjct: 576 TVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTL 635
Query: 576 VEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS 635
E+M + G+ P YT L++ K+G+ A L D+M +G+K D+ YT+ +
Sbjct: 636 FEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSH 695
Query: 636 IGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGC-EPSHH 694
+L +A + +M EGI PD V +C VLK+ ++ GC + +
Sbjct: 696 CNQLQKARSFLEEMIGEGIHPDEV-----LC-----------ISVLKKHYELGCIDEAVE 739
Query: 695 TYAFLIKH 702
++L+KH
Sbjct: 740 LQSYLMKH 747
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 177/551 (32%), Positives = 284/551 (51%), Gaps = 11/551 (1%)
Query: 161 EFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVP-NIYTFNTMINGCCKVGNV 219
EFS LS + +++KF +V + E + N+ +P N YT++ +IN C+ +
Sbjct: 83 EFSKLLSA------IAKMNKFDVVISLG----EQMQNLGIPHNHYTYSILINCFCRRSQL 132
Query: 220 GEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNL 279
A + K+++ G P+ T +SL+ GYC +K + + + M G + N V++ L
Sbjct: 133 PLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTL 192
Query: 280 IHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGC 339
IHGL + EA+ L RM C+P + TY VV+ GLC+ G A N+M
Sbjct: 193 IHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKL 252
Query: 340 EPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQ 399
EP V Y +ID LCK +D+A L M KG+ PNVVTY++LI C G A +
Sbjct: 253 EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 312
Query: 400 ILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQC 459
+L M +P+ T++ LI F K + A L +E++++++ P+++TY+SLI G C
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 372
Query: 460 REGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEV 519
LD A ++ + PD TY+ I CK RVEE +F + ++G+ V
Sbjct: 373 MHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 432
Query: 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKM 579
Y LI G + G D A + + M+SD PN TYN L+DGL + K+++A+++ E +
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492
Query: 580 TKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL 639
+ ++PT+YTY I+IE + K G + L + G+KPDV Y I +C G
Sbjct: 493 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSK 552
Query: 640 DEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFL 699
+EA+ L +M +G +P+S Y LI A G ++ +++K M G T +
Sbjct: 553 EEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLV 612
Query: 700 IKHLSNKKVDE 710
L + ++D+
Sbjct: 613 TNMLHDGRLDK 623
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (770), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 178/544 (32%), Positives = 277/544 (50%)
Query: 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYV 226
S+ +N LL ++K D + + +M +V +YT+N +IN C+ + A +
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143
Query: 227 SKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEA 286
K+++ G P T +SL+ GYC K + + M + G R + +++T LIHGL
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203
Query: 287 KRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTY 346
+ EA+ L RM + C+P + TY VV+ GLC+ G AL N+M A E +V +
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 263
Query: 347 TVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406
+ID LCK VD+A L M KG+ PNVVTY++LI C G A Q+L M
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323
Query: 407 NNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS 466
+PN T+N LI F K A L ++++++++ P + TYNSL+ G C LD
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 383
Query: 467 AYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526
A ++ + PD TY+ I CK RVE+ LF + +G+ V YT LI
Sbjct: 384 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 443
Query: 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKP 586
G +G D+A + ++M+SD P+ TY+ L+DGL K+++AL + + M K +K
Sbjct: 444 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 503
Query: 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646
+Y YT +IE + K G D L + G+KP+V TY I CS L EA L+
Sbjct: 504 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 563
Query: 647 VKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNK 706
KM +G +P+S TY LI A+ G ++ ++++ M T + L +
Sbjct: 564 KKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHDG 623
Query: 707 KVDE 710
++D+
Sbjct: 624 RLDK 627
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (767), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 193/676 (28%), Positives = 318/676 (47%), Gaps = 63/676 (9%)
Query: 74 LSPSHISSLFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVF 133
++P + L L LN T+++ W + G++HS + Y L+ L N K ++++
Sbjct: 76 ITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLI 135
Query: 134 LMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLE 193
M + KE LF+ +R +++G G T LM EM+ VY
Sbjct: 136 QMKDEGIVFKESLFI-SIMRDYDKAG--------FPGQTTRLML--------EMRNVY-- 176
Query: 194 MLDNMVVPNIYTFNT----MINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYC 249
P ++N +++G C V Y ++ + P FT+ ++ +C
Sbjct: 177 ----SCEPTFKSYNVVLEILVSGNCH--KVAANVFY--DMLSRKIPPTLFTFGVVMKAFC 228
Query: 250 RNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVR 309
+++ + M K GC N V Y LIH L + RV+EAL L M C P
Sbjct: 229 AVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAE 288
Query: 310 TYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRM 369
T+ VI GLC+ R +EA + N M RG P+ TY L++ LCK +VD A +L R+
Sbjct: 289 TFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRI 348
Query: 370 LEK--------------------------------GLFPNVVTYNALIDGYCKEGLMEAA 397
+ G+ P+V TYN+LI GY KEGL+ A
Sbjct: 349 PKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLA 408
Query: 398 LQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYG 457
L++L M++ C PN +Y L+ GFCK + A ++LNE+ L P + +N LI
Sbjct: 409 LEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA 468
Query: 458 QCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG 517
C+E + A ++ + G PD +T++ I LC+ ++ A L + +G+ A
Sbjct: 469 FCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVAN 528
Query: 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVE 577
V Y LI+ + + G+I +A L+ M+ + TYN+LI GL R +V +A L E
Sbjct: 529 TVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFE 588
Query: 578 KMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637
KM + G P+ + ILI + + G + A +MV G PD+ T+ + I C G
Sbjct: 589 KMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAG 648
Query: 638 KLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA 697
++++ + K+ EGI PD+VT+ L+ G +Y A +L + G P+H T++
Sbjct: 649 RIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWS 708
Query: 698 FLIKHLSNKKVDERKQ 713
L++ + ++ +R++
Sbjct: 709 ILLQSIIPQETLDRRR 724
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 299 bits (765), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 179/544 (32%), Positives = 276/544 (50%)
Query: 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYV 226
S+ +N LL ++K D + + +M + N+YT+N +IN C+ + A +
Sbjct: 9 SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 68
Query: 227 SKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEA 286
K+++ G P T +SL+ GYC K + + M + G R + +++T LIHGL
Sbjct: 69 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 128
Query: 287 KRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTY 346
+ EA+ L RM + C+P + TY VV+ GLC+ G A N+M A E +V +
Sbjct: 129 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIF 188
Query: 347 TVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406
+ID LCK VD+A L M KG+ PNVVTY++LI C G A Q+L M
Sbjct: 189 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 248
Query: 407 NNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS 466
+PN T+N LI F K A L ++++++++ P + TYNSLI G C LD
Sbjct: 249 KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK 308
Query: 467 AYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526
A ++ + PD TY+ I CK RVE+ LF + +G+ V YT LI
Sbjct: 309 AKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 368
Query: 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKP 586
G +G D+A + ++M+SD P+ TY+ L+DGL K+++AL + + M K +K
Sbjct: 369 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 428
Query: 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646
+Y YT +IE + K G D L + G+KP+V TY I CS L EA L+
Sbjct: 429 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 488
Query: 647 VKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNK 706
KM +G +PDS TY LI A+ G ++ ++++ M T + L +
Sbjct: 489 KKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHDG 548
Query: 707 KVDE 710
++D+
Sbjct: 549 RLDK 552
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 201/694 (28%), Positives = 323/694 (46%), Gaps = 51/694 (7%)
Query: 21 LNKYPFCKSSSIS----SLPLPLDPDPPDLPSQIFTILSTHPTTWQRHTSITKLIPLLSP 76
L YPF S +++ S L L P PS + S H LS
Sbjct: 7 LKFYPFSISQAVTLTHHSFSLNLTP-----PSSTISFASPHSAA-------------LSS 48
Query: 77 SHISSLFSLDLNP--QTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFL 134
+ + L SL P AL S+KP F Y E+I+
Sbjct: 49 TDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALY----------------EEILLR 92
Query: 135 MLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEM 194
+ +S S D ++++ E ++ + L+ ++F L DE+ V M
Sbjct: 93 LGRSGSFDD--------MKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWM 144
Query: 195 LDNM-VVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKD 253
+D + P+ + +N M+N ++ E+ +K+ G+ PD T+ LI CR
Sbjct: 145 IDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQ 204
Query: 254 VEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTV 313
+ + MP G +E ++T ++ G E +D AL + +M E C + + V
Sbjct: 205 LRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNV 264
Query: 314 VIFGLCRVGRKSEALEFFNEMSAR-GCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEK 372
++ G C+ GR +AL F EMS + G P+ +T+ L++ LCK V A E+++ ML++
Sbjct: 265 IVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE 324
Query: 373 GLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRA 432
G P+V TYN++I G CK G ++ A+++LD M + +CSPN TYN LI CK V A
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEA 384
Query: 433 MSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDT 492
L L + + P + T+NSLI G C + A ++ + G PD+FTY++ ID+
Sbjct: 385 TELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDS 444
Query: 493 LCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN 552
LC +G+++EA + +E G + Y LIDG+CK K +A + + M N
Sbjct: 445 LCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRN 504
Query: 553 SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLD 612
S TYN LIDGL + R+V++A L+++M G KP YTY L+ + GD A ++
Sbjct: 505 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQ 564
Query: 613 QMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672
M S G +PD+ TY I C G+++ A L+ + +GI Y +I
Sbjct: 565 AMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKR 624
Query: 673 LIYSAFDVLKRMFDAG-CEPSHHTYAFLIKHLSN 705
A ++ + M + P +Y + + L N
Sbjct: 625 KTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCN 658
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 166/494 (33%), Positives = 262/494 (53%)
Query: 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYV 226
S+ +N LL ++K D + + +M + N+YT+N +IN C+ + A +
Sbjct: 84 SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 143
Query: 227 SKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEA 286
K+++ G P T +SL+ GYC K + + M + G R + +++T LIHGL
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203
Query: 287 KRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTY 346
+ EA+ L RM + C+P + TY VV+ GLC+ G A N+M A E NV Y
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIY 263
Query: 347 TVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406
+ +ID LCK D+A L M KG+ PNV+TY++LI C A ++L M
Sbjct: 264 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIE 323
Query: 407 NNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS 466
+PN T+N LI F K + A L +E++++++ P + TY+SLI G C LD
Sbjct: 324 RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 383
Query: 467 AYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526
A + L+ P+ TY+ I+ CK R++E LF + ++G+ V YT LI
Sbjct: 384 AKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIH 443
Query: 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKP 586
G+ + D+A + ++M+SD PN TYN L+DGL + K+++A+++ E + + ++P
Sbjct: 444 GFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 503
Query: 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646
T+YTY I+IE + K G + L + G+KPDV Y I +C G +EA+ L
Sbjct: 504 TIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALF 563
Query: 647 VKMNREGIVPDSVT 660
KM +G +PDS T
Sbjct: 564 RKMREDGPLPDSGT 577
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 730 | ||||||
| 147857775 | 1099 | hypothetical protein VITISV_019809 [Viti | 0.947 | 0.629 | 0.637 | 0.0 | |
| 225434273 | 890 | PREDICTED: pentatricopeptide repeat-cont | 0.947 | 0.777 | 0.637 | 0.0 | |
| 224069551 | 726 | predicted protein [Populus trichocarpa] | 0.908 | 0.913 | 0.642 | 0.0 | |
| 449453087 | 915 | PREDICTED: pentatricopeptide repeat-cont | 0.928 | 0.740 | 0.618 | 0.0 | |
| 297797589 | 915 | pentatricopeptide repeat-containing prot | 0.964 | 0.769 | 0.573 | 0.0 | |
| 15238505 | 915 | pentatricopeptide repeat-containing prot | 0.942 | 0.751 | 0.572 | 0.0 | |
| 356529689 | 892 | PREDICTED: pentatricopeptide repeat-cont | 0.909 | 0.744 | 0.530 | 0.0 | |
| 357485461 | 894 | Pentatricopeptide repeat-containing prot | 0.908 | 0.741 | 0.534 | 0.0 | |
| 255583247 | 676 | pentatricopeptide repeat-containing prot | 0.663 | 0.715 | 0.631 | 0.0 | |
| 147858101 | 962 | hypothetical protein VITISV_041982 [Viti | 0.950 | 0.721 | 0.401 | 1e-143 |
| >gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/707 (63%), Positives = 559/707 (79%), Gaps = 15/707 (2%)
Query: 4 RAPAAIFTAFTKSPGQFLNKY--PFCKSSSISSLP--LPLDPDPPDLPSQIFTILSTHPT 59
R AAI PG++L P+ SSI+SLP L LD +P DL +Q+ +ILS
Sbjct: 2 RKSAAII-----KPGEYLLILLKPY---SSIASLPQILSLDSEPVDLSAQLLSILSR--P 51
Query: 60 TWQRHTSITKLIPLLSPSHISSLFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLL 119
WQ+H S+ KL+P L+PSH+SSLF+ +L+PQTAL F WI+ +PGFKH+V SYSS+LN+L
Sbjct: 52 NWQKHPSLRKLLPSLTPSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNIL 111
Query: 120 IRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLS 179
IR +EKI M+KSC +++LFVL+ R++N G EF K +++ YNT+LM LS
Sbjct: 112 IRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADG-EFKFKPTLRCYNTILMSLS 170
Query: 180 KFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTF 239
KF L+DEMK VYLE+L+N + PNIYTFN M+NG CK+GNV EAELY SKIVQAGL PDTF
Sbjct: 171 KFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTF 230
Query: 240 TYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRM 299
TYTSLILG+CRNK V+ + VF++MP+KGC+RNEVSYTNLIHGLCEA R++EAL LF M
Sbjct: 231 TYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADM 290
Query: 300 GEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKV 359
ED+C PTVRTYTV+I+ L GRK EAL FNEM +GCEPNVHTYTVLID LCKENK+
Sbjct: 291 TEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKM 350
Query: 360 DEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNEL 419
DEA ++L+ M EKGL P+VVTYNALIDGYCKEG+++ A +ILDLM+SN+C PN RTYNEL
Sbjct: 351 DEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNEL 410
Query: 420 ICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGL 479
ICG CK++ VH+AM+LLN++LE+ LSP+LITYNSLI+GQC+ L+SAY++L L+NE+GL
Sbjct: 411 ICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGL 470
Query: 480 VPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHS 539
VPDQ+TYSVFIDTLCK GRVEEA LFDS++ KG+KA EVIYTALIDGYCK GKID A+S
Sbjct: 471 VPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYS 530
Query: 540 LLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVL 599
LLERML+D CLPNSYTYN LI+GL +E+K++EA LV KM MGVKPTV TYTILI E+L
Sbjct: 531 LLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEML 590
Query: 600 KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSV 659
K+G FDHA ++ + MVSLG +PDV TYTAF+ AY S G L+E +D+I KMN EGI+PD V
Sbjct: 591 KDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLV 650
Query: 660 TYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNK 706
TYT+LI YA LGL + AFD LK M D GC+PS + + LIK+LS++
Sbjct: 651 TYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHE 697
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Vitis vinifera] gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/707 (63%), Positives = 559/707 (79%), Gaps = 15/707 (2%)
Query: 4 RAPAAIFTAFTKSPGQFLNKY--PFCKSSSISSLP--LPLDPDPPDLPSQIFTILSTHPT 59
R AAI PG++L P+ SSI+SLP L LD +P DL +Q+ +ILS
Sbjct: 2 RKSAAII-----KPGEYLLILLKPY---SSIASLPQILSLDSEPVDLSAQLLSILSR--P 51
Query: 60 TWQRHTSITKLIPLLSPSHISSLFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLL 119
WQ+H S+ KL+P L+PSH+SSLF+ +L+PQTAL F WI+ +PGFKH+V SYSS+LN+L
Sbjct: 52 NWQKHPSLRKLLPSLTPSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNIL 111
Query: 120 IRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLS 179
IR +EKI M+KSC +++LFVL+ R++N G EF K +++ YNT+LM LS
Sbjct: 112 IRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADG-EFKFKPTLRCYNTILMSLS 170
Query: 180 KFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTF 239
KF L+DEMK VYLE+L+N + PNIYTFN M+NG CK+GNV EAELY SKIVQAGL PDTF
Sbjct: 171 KFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTF 230
Query: 240 TYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRM 299
TYTSLILG+CRNK V+ + VF++MP+KGC+RNEVSYTNLIHGLCEA R++EAL LF M
Sbjct: 231 TYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADM 290
Query: 300 GEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKV 359
ED+C PTVRTYTV+I+ L GRK EAL FNEM +GCEPNVHTYTVLID LCKENK+
Sbjct: 291 TEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKM 350
Query: 360 DEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNEL 419
DEA ++L+ M EKGL P+VVTYNALIDGYCKEG+++ A +ILDLM+SN+C PN RTYNEL
Sbjct: 351 DEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNEL 410
Query: 420 ICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGL 479
ICG CK++ VH+AM+LLN++LE+ LSP+LITYNSLI+GQC+ L+SAY++L L+NE+GL
Sbjct: 411 ICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGL 470
Query: 480 VPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHS 539
VPDQ+TYSVFIDTLCK GRVEEA LFDS++ KG+KA EVIYTALIDGYCK GKID A+S
Sbjct: 471 VPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYS 530
Query: 540 LLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVL 599
LLERML+D CLPNSYTYN LI+GL +E+K++EA LV KM MGVKPTV TYTILI E+L
Sbjct: 531 LLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEML 590
Query: 600 KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSV 659
K+G FDHA ++ + MVSLG +PDV TYTAF+ AY S G L+E +D+I KMN EGI+PD V
Sbjct: 591 KDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLV 650
Query: 660 TYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNK 706
TYT+LI YA LGL + AFD LK M D GC+PS + + LIK+LS++
Sbjct: 651 TYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHE 697
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa] gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/668 (64%), Positives = 526/668 (78%), Gaps = 5/668 (0%)
Query: 37 LPLDPDPPD-LPSQIFTILSTHPTTWQRHTSITKLIPLLSPSHISSLFS--LDLNPQTAL 93
LP++PDPPD L S F + +HP WQRH S KLIP LSPSH+SSLF+ DLNP AL
Sbjct: 45 LPVEPDPPDDLSSHHFLSILSHPK-WQRHPSFQKLIPNLSPSHVSSLFNNHPDLNPNIAL 103
Query: 94 DFSYWISQ-KPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFL 152
F + KPGFKH+V+S+S LL +LI NN EKI M+K+C +I F+LDFL
Sbjct: 104 QFFNSLPLIKPGFKHTVKSHSFLLKILIPNNLFGVGEKIRISMIKACVSVDDIRFLLDFL 163
Query: 153 RRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMING 212
R++N ++ KLSV+ YN LLM L++F ++DEMKRVY EML++M+VPNIYT NTM+N
Sbjct: 164 RQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNA 223
Query: 213 CCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRN 272
K+GN+ EA LYVSKI QAGLSPD+FTYTSLILGYCRN DV ++VF MMP KGCRRN
Sbjct: 224 YSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRN 283
Query: 273 EVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFN 332
EVSYT +IHGLCEA R+DE + LF++M EDDC PTVRTYTV+I L R E ++ FN
Sbjct: 284 EVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFN 343
Query: 333 EMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEG 392
EM R CEPNVHTYTV++D +CKE K+DE+ +LN M+EKGL P+VVTYNALI GYC+EG
Sbjct: 344 EMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEG 403
Query: 393 LMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYN 452
+EAAL+IL LM+SNNC PN RTYNELICGF KRK+VH+AM+LL+++LE L+P+L+TYN
Sbjct: 404 RIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYN 463
Query: 453 SLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK 512
SLI+ QC+ GH DSAYK+L L+ E+GLVPDQ+TYSVFIDTLCK R+EEA LF+SL++K
Sbjct: 464 SLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEK 523
Query: 513 GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEA 572
GIKA EV+YTALIDG+CK GKID+A SLLERM S+DCLPNS TYN+LI G+ +E KVQE
Sbjct: 524 GIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEG 583
Query: 573 LLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQA 632
L +VE M+KMGVKPTV TYTILIEE+L+EGDFDHA+R+ +QMVS G KPDVYTYTAFI
Sbjct: 584 LSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHT 643
Query: 633 YCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPS 692
YC+ G + EAE ++ +M G++PDS+TYTLLI AY LGL Y AF+VLKRM DAGC+PS
Sbjct: 644 YCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPS 703
Query: 693 HHTYAFLI 700
H + LI
Sbjct: 704 HPIWNNLI 711
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Cucumis sativus] gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/681 (61%), Positives = 534/681 (78%), Gaps = 3/681 (0%)
Query: 30 SSISSLPLPLDPDPPDLPSQIFTILSTHPTTWQRHTSITKLIPLLSPSHISSLFSLDLNP 89
+S +SLP + D+P+Q+F+ILS WQ+H S+ LIP ++PSHIS+LF+L+L+P
Sbjct: 34 TSPASLPQSFSVEH-DIPAQLFSILSR--PNWQKHPSLKNLIPSIAPSHISALFALNLDP 90
Query: 90 QTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVL 149
QTAL F WI QK GFKH+V+S+ S+LN+L+ N + + +E + LM+KS + LFVL
Sbjct: 91 QTALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAENMRILMIKSTDSSENALFVL 150
Query: 150 DFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTM 209
+ LR +N F KL+++ YN LLM LS+F ++DEMK VYLEMLD+MV PNI+T NTM
Sbjct: 151 EMLRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTM 210
Query: 210 INGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGC 269
+NG CK+GNV EAELYVSKIVQAGLS DTFTYTSLILGYCRNK+V+ +F+ MP KGC
Sbjct: 211 VNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGC 270
Query: 270 RRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALE 329
RNEVSYTNLIHG CEA+RVDEAL LF +M ED+C PTVRTYTV+IF LC++GRK+EAL
Sbjct: 271 LRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALN 330
Query: 330 FFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYC 389
F EM+ + C+PNVHTYTVLI LC+++ D+A ++LN MLEKGL P+VVTYNALIDGYC
Sbjct: 331 MFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYC 390
Query: 390 KEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLI 449
K+GL +AL+IL LM+SNNCSPNARTYNELI GFC+ KN+H+AMSLL+++LE+ L P ++
Sbjct: 391 KKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVV 450
Query: 450 TYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSL 509
TYN LI+GQC+EG L SAYK+L L+NESGLVPD++TYSVFIDTLCKRG VEEA+ LF+SL
Sbjct: 451 TYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESL 510
Query: 510 EKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKV 569
++KGIKA EVIY+ LIDGYCK GK+ D LL++MLS C+PNS TYN+LIDG +E+
Sbjct: 511 KEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNF 570
Query: 570 QEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAF 629
+EA LLV+ M K ++P TYTILI+ +LK+ +FD AH + DQM+S G PDV+ YTAF
Sbjct: 571 KEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAF 630
Query: 630 IQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGC 689
I AYCS G+L +AE LI KMN +GI+PD++ YTL I AY G I AF +LKRM + GC
Sbjct: 631 IHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGC 690
Query: 690 EPSHHTYAFLIKHLSNKKVDE 710
EPS++TY+ LIKHLSN K E
Sbjct: 691 EPSYYTYSCLIKHLSNAKPKE 711
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/711 (57%), Positives = 520/711 (73%), Gaps = 7/711 (0%)
Query: 10 FTAFTKSPGQFLNKYPFCKSSS-ISSLPLPLDPDPPDLPSQIFTILSTHPTTWQRHTSIT 68
F+A K P F + FC S I +LP + DP +P ++F+ILS W + S+
Sbjct: 27 FSADVKIPSPFTRR-QFCSVSPLIRNLPED-ESDPTSVPHRLFSILSK--PNWHKCPSLK 82
Query: 69 KLIPLLSPSHISSLFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKAS 128
++P +SPSH+SSLFSLDL+P+TAL+FS+WISQ P +KHSV SY+SLL LLI N +
Sbjct: 83 SMVPAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVV 142
Query: 129 EKIVFLMLKSCSLDKEILFVLDFLRRVNESGS-EFSLKLSVKGYNTLLMQLSKFHLVDEM 187
KI LM+KSC + LFVLD R++N+ S E KL + YNTLL L++F LVDEM
Sbjct: 143 FKIRLLMIKSCDSVADTLFVLDLCRKMNKDESFELKYKLIIGCYNTLLNSLARFGLVDEM 202
Query: 188 KRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILG 247
K+VY+EML++ V PNIYT+N M+NG CKVGNV EA YVS IV+AGL PD FTYTSLI+G
Sbjct: 203 KQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMG 262
Query: 248 YCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPT 307
YC+ KD++ F+VF MP KGCRRNEV+YT+LIHGLC +R+DEA+DLF +M +DDC PT
Sbjct: 263 YCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPT 322
Query: 308 VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLN 367
VRTYTV+I LC RKSEAL EM +G +PN+HTYTVLID LC + K+++A ELL
Sbjct: 323 VRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLG 382
Query: 368 RMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRK 427
+MLEKGL PNV+TYNALI+GYCK G++E AL +++LM+S N PN RTYNELI G+CKR
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKR- 441
Query: 428 NVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYS 487
NVH+AM +LN++LE+ + P ++TYNSLI GQCR G+ DSAY++L L+N+ GLVPD +TY+
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYT 501
Query: 488 VFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSD 547
ID+LCK RVEEA LFDSLE+K + V+YTALIDGYCK GK+++AH +LE+MLS
Sbjct: 502 SMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSK 561
Query: 548 DCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHA 607
+CLPNS T+NALI GL + K++EA LL EKM K+ ++PTV T TILI +LK+GDFDHA
Sbjct: 562 NCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHA 621
Query: 608 HRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICA 667
+R QM+S G KPD +TYT FIQ YC G+L +AED++ KM G+ PD TY+ LI
Sbjct: 622 YRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKG 681
Query: 668 YAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVDERKQQCDGI 718
Y LG SAF VLKRM D GCEPS HT+ LIKHL K + K G+
Sbjct: 682 YGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGV 732
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana] gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana] gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/694 (57%), Positives = 511/694 (73%), Gaps = 6/694 (0%)
Query: 21 LNKYPFCKSSSI-SSLPLPLDPDPPDLPSQIFTILSTHPTTWQRHTSITKLIPLLSPSHI 79
+ + FC S + +LP + D +P ++ +ILS W + S+ ++ +SPSH+
Sbjct: 37 VTRRQFCSVSPLLRNLPEE-ESDSMSVPHRLLSILSK--PNWHKSPSLKSMVSAISPSHV 93
Query: 80 SSLFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSC 139
SSLFSLDL+P+TAL+FS+WISQ P +KHSV SY+SLL LLI N + KI LM+KSC
Sbjct: 94 SSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSC 153
Query: 140 SLDKEILFVLDFLRRVNESGS-EFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNM 198
+ L+VLD R++N+ E KL + YNTLL L++F LVDEMK+VY+EML++
Sbjct: 154 DSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDK 213
Query: 199 VVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGF 258
V PNIYT+N M+NG CK+GNV EA YVSKIV+AGL PD FTYTSLI+GYC+ KD++ F
Sbjct: 214 VCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAF 273
Query: 259 RVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGL 318
+VF MP KGCRRNEV+YT+LIHGLC A+R+DEA+DLF +M +D+C PTVRTYTV+I L
Sbjct: 274 KVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Query: 319 CRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNV 378
C RKSEAL EM G +PN+HTYTVLID LC + K ++A ELL +MLEKGL PNV
Sbjct: 334 CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393
Query: 379 VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNE 438
+TYNALI+GYCK G++E A+ +++LM+S SPN RTYNELI G+CK NVH+AM +LN+
Sbjct: 394 ITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNK 452
Query: 439 LLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGR 498
+LE+ + P ++TYNSLI GQCR G+ DSAY++L L+N+ GLVPDQ+TY+ ID+LCK R
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512
Query: 499 VEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNA 558
VEEA LFDSLE+KG+ V+YTALIDGYCK GK+D+AH +LE+MLS +CLPNS T+NA
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNA 572
Query: 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG 618
LI GL + K++EA LL EKM K+G++PTV T TILI +LK+GDFDHA+ QM+S G
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632
Query: 619 LKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAF 678
KPD +TYT FIQ YC G+L +AED++ KM G+ PD TY+ LI Y LG AF
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAF 692
Query: 679 DVLKRMFDAGCEPSHHTYAFLIKHLSNKKVDERK 712
DVLKRM D GCEPS HT+ LIKHL K ++K
Sbjct: 693 DVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQK 726
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/679 (53%), Positives = 486/679 (71%), Gaps = 15/679 (2%)
Query: 38 PLDPDPPDLPSQIFTILSTHPTTWQRHTSITKLIPLLSPSHISSLFSLDLNPQTALDFSY 97
P LP+QIFTILS W++ S+ LIP L+PS + SLF+L+ +P TAL+F
Sbjct: 17 PFSSSSSSLPTQIFTILSR--PRWRKDPSLKTLIPSLTPSLLCSLFNLNPDPLTALNFFR 74
Query: 98 WISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVN- 156
WI + F HS+ ++ SLL LL+R+ +A+E + M+KSC+ + F+L+ LRR+N
Sbjct: 75 WIRRHHNFPHSLATHHSLLLLLVRHRTLRAAENVRNSMIKSCTSPHDATFLLNLLRRMNT 134
Query: 157 -----ESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEML---DNMVVPNIYTFNT 208
+ + + KLS+ YN LLM LS+F +VDEM +Y EML N V PN+ T NT
Sbjct: 135 AAAAADHQHQLAFKLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNT 194
Query: 209 MINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKG 268
M+N CK+GN+ A L+ +I++ PD FTYTSL+LGYCRN DVE+ VF +MP
Sbjct: 195 MLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMP--- 251
Query: 269 CRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEAL 328
RRN VSYTNLIHGLCEA ++ EAL+ + RM ED C PTVRTYTV++ LC GR+ EAL
Sbjct: 252 -RRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEAL 310
Query: 329 EFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGY 388
F EM RGCEPNV+TYTVLID LCKE ++DEA ++LN M+EKG+ P+VV +NALI Y
Sbjct: 311 SLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSY 370
Query: 389 CKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTL 448
CK G+ME A+ +L LM+S PN RTYNELICGFC+ K++ RAM+LLN+++E LSP +
Sbjct: 371 CKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDV 430
Query: 449 ITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDS 508
+TYN+LI+G C G +DSA ++ L+ G PDQ+T++ F+ LC+ GRV EA + +S
Sbjct: 431 VTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILES 490
Query: 509 LEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERK 568
L++K +KA E YTALIDGYCK GKI+ A SL +RML+++CLPNS T+N +IDGL +E K
Sbjct: 491 LKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGK 550
Query: 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTA 628
VQ+A+LLVE M K VKPT++TY IL+EEVLKE DFD A+ +L++++S G +P+V TYTA
Sbjct: 551 VQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTA 610
Query: 629 FIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAG 688
FI+AYCS G+L+EAE++++K+ EG++ DS Y LLI AY +GL+ SAF VL+RMF G
Sbjct: 611 FIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTG 670
Query: 689 CEPSHHTYAFLIKHLSNKK 707
CEPS+ TY+ L+KHL +K
Sbjct: 671 CEPSYLTYSILMKHLVIEK 689
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/673 (53%), Positives = 483/673 (71%), Gaps = 10/673 (1%)
Query: 45 DLPSQIFTILSTHPTTWQRHTSITKLIPLLSPSHISSLFS-LDLNPQTALDFSYWISQKP 103
DLPSQIFTIL P W+++ S LIP L+P+H+SSLF+ +L+P TAL+F WI +
Sbjct: 40 DLPSQIFTIL-LQPQ-WRKNPSFNTLIPSLTPTHLSSLFNNPNLHPLTALNFFKWIHYQH 97
Query: 104 GFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFS 163
GF H+V SY LL +L+RN F +A+E + M+KSC E FVL+ L + EFS
Sbjct: 98 GFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCVSSHEARFVLNLL-----THHEFS 152
Query: 164 LKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAE 223
L SV YN L M LS+F L+DE+ ++ +ML++ V PN+ +FNTM+N CK+GNV A+
Sbjct: 153 L--SVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAK 210
Query: 224 LYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGL 283
Y +++ G D+FTYTSLILGYC+ ++ ++VF +MP++GC RNEVSYTNLIHG
Sbjct: 211 AYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGF 270
Query: 284 CEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNV 343
CE ++DEAL+LF +M ED C P V TYTV++ C VG+++EAL+FF EM G EPNV
Sbjct: 271 CEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNV 330
Query: 344 HTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDL 403
+TYTVLID CK K+DE E+L+ MLEKGL +VV +NALIDGYCK G+ME A+ +LD
Sbjct: 331 YTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDS 390
Query: 404 MKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGH 463
MK N PN+RTYNELICGFC++K++ RAM+LLN++ E LSP L+TYN+LI+G C+
Sbjct: 391 MKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARV 450
Query: 464 LDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTA 523
+DSA+++ HL+ + G VPDQ T+ FID LCK G+VE+A +F+SL++K +A E +YTA
Sbjct: 451 VDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTA 510
Query: 524 LIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG 583
LIDGYCK K DAH L +RML + C PNS T+N L+DGL +E KV++A+ LV+ M K
Sbjct: 511 LIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFD 570
Query: 584 VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE 643
KPTV+TYTILIEE+L+E DFD A+ LDQM+S G +P+V TYTAFI+AYC G+L EAE
Sbjct: 571 AKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAE 630
Query: 644 DLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703
+++VK+ EGI+ DS Y +L+ AY +G + SAF VL RMFD GCEPS TY+ L+KHL
Sbjct: 631 EMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHL 690
Query: 704 SNKKVDERKQQCD 716
+K ++ D
Sbjct: 691 IFEKYNKEGMGLD 703
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/513 (63%), Positives = 409/513 (79%), Gaps = 29/513 (5%)
Query: 209 MINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKG 268
M+NG CK+GN+ EA L N DV F VF MMPKKG
Sbjct: 1 MVNGYCKLGNLVEANL--------------------------NNDVNSAFSVFNMMPKKG 34
Query: 269 CRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEAL 328
CRRNEVSYTNLIHGLCE RVDE +++F++M EDDC PTVRTYTV++ L GR+ EA+
Sbjct: 35 CRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAI 94
Query: 329 EFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGY 388
F+EM RGCEPN+HTYTV+I+ +CKE K++E +L+ M+EKGL P+V TYNALIDGY
Sbjct: 95 NLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGY 154
Query: 389 CKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTL 448
CKEG++EAA +ILDLM SN+C+PN RTYNELICGFC++KNVHRAM+LL+++LE L+P++
Sbjct: 155 CKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSV 214
Query: 449 ITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDS 508
+TYNSLI+GQC+ G+LDSAY++L+L+NE+G+VPDQ+TYSVFIDTLCK+GR+EEA VLF+S
Sbjct: 215 VTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNS 274
Query: 509 LEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERK 568
L++KGIKA EVIYTALIDGYCK GK+DDA+SLL+RML++DCLPNS TYNALIDGL +ERK
Sbjct: 275 LKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERK 334
Query: 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTA 628
VQEALLL+E M + G+K TV TYTILI +LKEGDFD+AHR+LDQMVS G +PDVY YTA
Sbjct: 335 VQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTA 394
Query: 629 FIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAG 688
FI A+C+ G + EAED++ M G++PD++TYTL+I AY LGL+ AFDVLKRMFD G
Sbjct: 395 FIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTG 454
Query: 689 CEPSHHTYAFLIKHLSNKKVDERKQQ---CDGI 718
C+PSHHTY+ LIKHL +++ ++ + CD I
Sbjct: 455 CDPSHHTYSCLIKHLLKEELTKKYKNVALCDSI 487
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 283/705 (40%), Positives = 425/705 (60%), Gaps = 11/705 (1%)
Query: 4 RAPAAIFTAFTKSPGQFLNKYPFCKSSSISS-LPLPLDPDP-PDLPSQIFTILSTHPTTW 61
++P + S FLN F ISS +P +P + S++ ILS W
Sbjct: 48 KSPCLVHLQNHSSVLGFLN---FSSKPHISSHFAVPASREPFQAIVSRVCAILSR--VQW 102
Query: 62 QRHTSITKLIPLLSPSHISSLFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIR 121
+ + + +L P L H++ + ++ + ++ + F YWIS++P +KH++ + S+LN L+R
Sbjct: 103 KGSSELKQLSPQLKAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVR 162
Query: 122 NNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKF 181
+ ++ I LM+K+C ++EI V DFL ++ G FSL NTLL+QL+KF
Sbjct: 163 DRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLY----SCNTLLIQLAKF 218
Query: 182 HLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTY 241
+V+ + +Y +ML++ + P++ TFNT+IN K G V EAEL +S+I Q LSPD FTY
Sbjct: 219 EMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTY 278
Query: 242 TSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGE 301
TSLILG+CRN++++ F VF M K+GC N V+Y+ LI+GLC RVDEALD+ M E
Sbjct: 279 TSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 338
Query: 302 DDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDE 361
PTV TYT+ I LC + + EA+E M RGC PNV TYT LI L + K++
Sbjct: 339 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 398
Query: 362 ASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELIC 421
A L ++ML++GL PN VTYNALI+ C G AL+I M+ + N +TYNE+I
Sbjct: 399 AIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIK 458
Query: 422 GFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVP 481
G C ++ +AM L ++L+ PT++TYN+LI G +G++++A ++L L+ E+G P
Sbjct: 459 GLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEP 518
Query: 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLL 541
D++TY+ + K G++E A F + + G+ V YT LIDG+ K+GK+D A SLL
Sbjct: 519 DEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLL 578
Query: 542 ERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE 601
ERM C PN +YNA+I+GL +E + EA + +KM + G+ P V TYT LI+ + +
Sbjct: 579 ERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRN 638
Query: 602 GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTY 661
G A ++ M P++YTY++ I C GK DEAE L+ +M R+G+ PD VT+
Sbjct: 639 GRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTF 698
Query: 662 TLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNK 706
T LI + LG I AF +L+RM D GC+P++ TY+ L+K L +
Sbjct: 699 TSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKE 743
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 730 | ||||||
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.905 | 0.722 | 0.566 | 3.2e-200 | |
| TAIR|locus:2098495 | 880 | AT3G07290 "AT3G07290" [Arabido | 0.838 | 0.695 | 0.368 | 1.8e-112 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.784 | 0.933 | 0.320 | 9e-77 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.709 | 0.817 | 0.335 | 9.3e-75 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.835 | 0.809 | 0.303 | 1.9e-74 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.743 | 0.861 | 0.315 | 2.5e-74 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.746 | 0.865 | 0.321 | 4.6e-73 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.676 | 0.856 | 0.331 | 4.6e-73 | |
| TAIR|locus:2132937 | 704 | RPF5 "AT4G28010" [Arabidopsis | 0.780 | 0.809 | 0.321 | 2e-72 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.582 | 0.710 | 0.335 | 1.1e-71 |
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1938 (687.3 bits), Expect = 3.2e-200, P = 3.2e-200
Identities = 377/665 (56%), Positives = 476/665 (71%)
Query: 49 QIFTILSTHPTTWQRHTSITKXXXXXXXXXXXXXXXXDLNPQTALDFSYWISQKPGFKHS 108
++ +ILS P W + S+ DL+P+TAL+FS+WISQ P +KHS
Sbjct: 65 RLLSILSK-PN-WHKSPSLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHS 122
Query: 109 VESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGS-EFSLKLS 167
V SY+SLL LLI N + KI LM+KSC + L+VLD R++N+ E KL
Sbjct: 123 VYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLI 182
Query: 168 VKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVS 227
+ YNTLL L++F LVDEMK+VY+EML++ V PNIYT+N M+NG CK+GNV EA YVS
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVS 242
Query: 228 KIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAK 287
KIV+AGL PD FTYTSLI+GYC+ KD++ F+VF MP KGCRRNEV+YT+LIHGLC A+
Sbjct: 243 KIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVAR 302
Query: 288 RVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYT 347
R+DEA+DLF +M +D+C PTVRTYTV+I LC RKSEAL EM G +PN+HTYT
Sbjct: 303 RIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYT 362
Query: 348 VLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSN 407
VLID LC + K ++A ELL +MLEKGL PNV+TYNALI+GYCK G++E A+ +++LM+S
Sbjct: 363 VLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESR 422
Query: 408 NCSPNARTYNELICGFCKRKNVHRAMXXXXXXXXXXXXPTLITYNSLIYGQCREGHLDSA 467
SPN RTYNELI G+CK NVH+AM P ++TYNSLI GQCR G+ DSA
Sbjct: 423 KLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSA 481
Query: 468 YKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDG 527
Y++L L+N+ GLVPDQ+TY+ ID+LCK RVEEA LFDSLE+KG+ V+YTALIDG
Sbjct: 482 YRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDG 541
Query: 528 YCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT 587
YCK GK+D+AH +LE+MLS +CLPNS T+NALI GL + K++EA LL EKM K+G++PT
Sbjct: 542 YCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPT 601
Query: 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIV 647
V T TILI +LK+GDFDHA+ QM+S G KPD +TYT FIQ YC G+L +AED++
Sbjct: 602 VSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMA 661
Query: 648 KMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKK 707
KM G+ PD TY+ LI Y LG AFDVLKRM D GCEPS HT+ LIKHL K
Sbjct: 662 KMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMK 721
Query: 708 VDERK 712
++K
Sbjct: 722 YGKQK 726
|
|
| TAIR|locus:2098495 AT3G07290 "AT3G07290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 231/627 (36%), Positives = 366/627 (58%)
Query: 95 FSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCS-LDKEIL---FVLD 150
F W+ + + + LL L++ + + + ++ ++K CS +KE+L + D
Sbjct: 89 FFMWVCKHSSYCFDPTQKNQLLKLIVSSGLYRVAHAVIVALIKECSRCEKEMLKLMYCFD 148
Query: 151 FLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEM-LDNMVVPNIYTFNTM 209
LR V F +L+ Y++LLM L+K L Y M D VV I + T+
Sbjct: 149 ELREV------FGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMI-DYRTI 201
Query: 210 INGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKK-G 268
+N CK G AE+++SKI++ G D+ TSL+LG+CR ++ +VF +M K+
Sbjct: 202 VNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVT 261
Query: 269 CRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEAL 328
C N VSY+ LIHGLCE R++EA L +MGE C+P+ RTYTV+I LC G +A
Sbjct: 262 CAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAF 321
Query: 329 EFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGY 388
F+EM RGC+PNVHTYTVLID LC++ K++EA+ + +M++ +FP+V+TYNALI+GY
Sbjct: 322 NLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGY 381
Query: 389 CKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMXXXXXXXXXXXXPTL 448
CK+G + A ++L +M+ C PN RT+NEL+ G C+ ++A+ P +
Sbjct: 382 CKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDI 441
Query: 449 ITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDS 508
++YN LI G CREGH+++AYK+L +N + PD T++ I+ CK+G+ + A
Sbjct: 442 VSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGL 501
Query: 509 LEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERK 568
+ +KGI EV T LIDG CK GK DA +LE ++ L ++ N ++D L + K
Sbjct: 502 MLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCK 561
Query: 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTA 628
V+E L ++ K+ K+G+ P+V TYT L++ +++ GD + R+L+ M G P+VY YT
Sbjct: 562 VKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTI 621
Query: 629 FIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAG 688
I C G+++EAE L+ M G+ P+ VTYT+++ Y + G + A + ++ M + G
Sbjct: 622 IINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERG 681
Query: 689 CEPSHHTYAFLIKH--LSNKKVDERKQ 713
E + Y+ L++ LS K +D ++
Sbjct: 682 YELNDRIYSSLLQGFVLSQKGIDNSEE 708
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 187/583 (32%), Positives = 288/583 (49%)
Query: 129 EKIVFLMLKSCSLDKEI-LFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEM 187
EK+ L LD+ + LF R S EFS LS + ++ KF LV
Sbjct: 34 EKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSA------IAKMKKFDLVISF 87
Query: 188 KRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILG 247
+E+L V N+YT+N MIN C+ + A + K+++ G P T SL+ G
Sbjct: 88 GEK-MEILG--VSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNG 144
Query: 248 YCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPT 307
+C + + + M + G + + V++T L+HGL + + EA+ L RM C+P
Sbjct: 145 FCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD 204
Query: 308 VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLN 367
+ TY VI GLC+ G AL N+M E +V Y+ +ID LCK VD+A L
Sbjct: 205 LVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFT 264
Query: 368 RMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRK 427
M KG+ P+V TY++LI C G A ++L M +PN T+N LI F K
Sbjct: 265 EMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEG 324
Query: 428 NVHRAMXXXXXXXXXXXXPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYS 487
+ A P ++TYNSLI G C LD A ++ L+ +PD TY+
Sbjct: 325 KLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYN 384
Query: 488 VFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSD 547
I+ CK +V + LF + ++G+ V YT LI G+ + D+A + ++M+SD
Sbjct: 385 TLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSD 444
Query: 548 DCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHA 607
PN TYN L+DGL + K+++A+++ E + K ++P +YTY I+ E + K G +
Sbjct: 445 GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDG 504
Query: 608 HRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICA 667
L + G+KPDV Y I +C G +EA L +KM +G +PDS TY LI A
Sbjct: 505 WDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRA 564
Query: 668 YAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVDE 710
+ G ++ +++K M TY + L + ++D+
Sbjct: 565 HLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHDGRLDK 607
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 174/518 (33%), Positives = 260/518 (50%)
Query: 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYV 226
S+ +N LL ++K D + + +M +V +YT+N +IN C+ + A +
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143
Query: 227 SKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEA 286
K+++ G P T +SL+ GYC K + + M + G R + +++T LIHGL
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203
Query: 287 KRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTY 346
+ EA+ L RM + C+P + TY VV+ GLC+ G AL N+M A E +V +
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 263
Query: 347 TVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406
+ID LCK VD+A L M KG+ PNVVTY++LI C G A Q+L M
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323
Query: 407 NNCSPNARTYNELICGFCKRKNVHRAMXXXXXXXXXXXXPTLITYNSLIYGQCREGHLDS 466
+PN T+N LI F K A P + TYNSL+ G C LD
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 383
Query: 467 AYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526
A ++ + PD TY+ I CK RVE+ LF + +G+ V YT LI
Sbjct: 384 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 443
Query: 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKP 586
G +G D+A + ++M+SD P+ TY+ L+DGL K+++AL + + M K +K
Sbjct: 444 GLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL 503
Query: 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646
+Y YT +IE + K G D L + G+KP+V TY I CS L EA L+
Sbjct: 504 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 563
Query: 647 VKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684
KM +G +P+S TY LI A+ G ++ ++++ M
Sbjct: 564 KKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 190/627 (30%), Positives = 302/627 (48%)
Query: 100 SQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKS-CSLDKEILFVL--------- 149
S+KP F Y +L L R+ +KI+ M S C + +L
Sbjct: 74 SKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFEL 133
Query: 150 --DFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFN 207
+ L V+ EF LK YN +L L + + ++ + +M + P++ TFN
Sbjct: 134 QDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFN 193
Query: 208 TMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKK 267
+I C+ + A L + + GL PD T+T+++ GY D++ R+ M +
Sbjct: 194 VLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEF 253
Query: 268 GCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMG-EDDCRPTVRTYTVVIFGLCRVGRKSE 326
GC + VS ++HG C+ RV++AL+ + M +D P T+ ++ GLC+ G
Sbjct: 254 GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKH 313
Query: 327 ALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALID 386
A+E + M G +P+V+TY +I LCK +V EA E+L++M+ + PN VTYN LI
Sbjct: 314 AIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIS 373
Query: 387 GYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHR-AMXXXXXXXXXXXX 445
CKE +E A ++ ++ S P+ T+N LI G C +N HR AM
Sbjct: 374 TLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN-HRVAMELFEEMRSKGCE 432
Query: 446 PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVL 505
P TYN LI C +G LD A +L + SG TY+ ID CK + EA+ +
Sbjct: 433 PDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEI 492
Query: 506 FDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR 565
FD +E G+ V Y LIDG CK +++DA L+++M+ + P+ YTYN+L+ R
Sbjct: 493 FDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCR 552
Query: 566 ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYT 625
+++A +V+ MT G +P + TY LI + K G + A +LL + G+ +
Sbjct: 553 GGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHA 612
Query: 626 YTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHLG-LIYSAFDVLKR 683
Y IQ K EA +L +M + P D+V+Y ++ + G I A D L
Sbjct: 613 YNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVE 672
Query: 684 MFDAGCEPSHHTYAFLIKHLSNKKVDE 710
+ + G P + L + L ++E
Sbjct: 673 LLEKGFVPEFSSLYMLAEGLLTLSMEE 699
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 172/545 (31%), Positives = 274/545 (50%)
Query: 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVP-NIYTFNTMINGCCKVGNVGEAELY 225
S+ ++ LL ++K + D + + E + N+ +P N YT++ +IN C+ + A
Sbjct: 80 SIIEFSKLLSAIAKMNKFDVVISLG-EQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 226 VSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCE 285
+ K+++ G P+ T +SL+ GYC +K + + + M G + N V++ LIHGL
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 286 AKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHT 345
+ EA+ L RM C+P + TY VV+ GLC+ G A N+M EP V
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258
Query: 346 YTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMK 405
Y +ID LCK +D+A L M KG+ PNVVTY++LI C G A ++L M
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 406 SNNCSPNARTYNELICGFCKRKNVHRAMXXXXXXXXXXXXPTLITYNSLIYGQCREGHLD 465
+P+ T++ LI F K + A P+++TY+SLI G C LD
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378
Query: 466 SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALI 525
A ++ + PD TY+ I CK RVEE +F + ++G+ V Y LI
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 438
Query: 526 DGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVK 585
G + G D A + + M+SD PN TYN L+DGL + K+++A+++ E + + ++
Sbjct: 439 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 498
Query: 586 PTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDL 645
PT+YTY I+IE + K G + L + G+KPDV Y I +C G +EA+ L
Sbjct: 499 PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADAL 558
Query: 646 IVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSN 705
+M +G +P+S Y LI A G ++ +++K M G T + L +
Sbjct: 559 FKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 618
Query: 706 KKVDE 710
++D+
Sbjct: 619 GRLDK 623
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 179/557 (32%), Positives = 277/557 (49%)
Query: 130 KIVFLMLKSCSLDKEILFVLDFLR-RVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMK 188
KI L LD + D ++ R S EFS LS + +++KF LV +
Sbjct: 51 KISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSA------IAKMNKFDLVISLG 104
Query: 189 RVYLEMLDNMVVP-NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILG 247
E + N+ + N+YT++ +IN C+ + A ++K+++ G PD T SL+ G
Sbjct: 105 ----EQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNG 160
Query: 248 YCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPT 307
+C + + M + G + + ++ LIHGL R EA+ L RM C+P
Sbjct: 161 FCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPD 220
Query: 308 VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLN 367
+ TY +V+ GLC+ G AL +M EP V Y +ID LC V++A L
Sbjct: 221 LVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFT 280
Query: 368 RMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRK 427
M KG+ PNVVTYN+LI C G A ++L M +PN T++ LI F K
Sbjct: 281 EMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEG 340
Query: 428 NVHRAMXXXXXXXXXXXXPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYS 487
+ A P + TY+SLI G C LD A + L+ P+ TY+
Sbjct: 341 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN 400
Query: 488 VFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSD 547
I CK RV+E LF + ++G+ V YT LI G+ + + D+A + ++M+SD
Sbjct: 401 TLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSD 460
Query: 548 DCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHA 607
LP+ TY+ L+DGL KV+ AL++ E + + ++P +YTY I+IE + K G +
Sbjct: 461 GVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDG 520
Query: 608 HRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICA 667
L + G+KP+V TYT + +C G +EA+ L +M EG +PDS TY LI A
Sbjct: 521 WDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRA 580
Query: 668 YAHLGLIYSAFDVLKRM 684
+ G ++ ++++ M
Sbjct: 581 HLRDGDKAASAELIREM 597
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 164/494 (33%), Positives = 253/494 (51%)
Query: 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYV 226
S+ +N LL ++K D + + +M + N+YT+N +IN C+ + A +
Sbjct: 84 SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 143
Query: 227 SKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEA 286
K+++ G P T +SL+ GYC K + + M + G R + +++T LIHGL
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203
Query: 287 KRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTY 346
+ EA+ L RM + C+P + TY VV+ GLC+ G A N+M A E NV Y
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIY 263
Query: 347 TVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406
+ +ID LCK D+A L M KG+ PNV+TY++LI C A ++L M
Sbjct: 264 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIE 323
Query: 407 NNCSPNARTYNELICGFCKRKNVHRAMXXXXXXXXXXXXPTLITYNSLIYGQCREGHLDS 466
+PN T+N LI F K + A P + TY+SLI G C LD
Sbjct: 324 RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 383
Query: 467 AYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526
A + L+ P+ TY+ I+ CK R++E LF + ++G+ V YT LI
Sbjct: 384 AKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIH 443
Query: 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKP 586
G+ + D+A + ++M+SD PN TYN L+DGL + K+++A+++ E + + ++P
Sbjct: 444 GFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 503
Query: 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646
T+YTY I+IE + K G + L + G+KPDV Y I +C G +EA+ L
Sbjct: 504 TIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALF 563
Query: 647 VKMNREGIVPDSVT 660
KM +G +PDS T
Sbjct: 564 RKMREDGPLPDSGT 577
|
|
| TAIR|locus:2132937 RPF5 "AT4G28010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 187/582 (32%), Positives = 293/582 (50%)
Query: 134 LMLKSC-SLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYL 192
LM K S + E+ F F R++ E+ + + +S+ G +Q+ K + +
Sbjct: 78 LMAKLVRSRNHELAF--SFYRKMLETDTFINF-VSLSGLLECYVQMRKTGFAFGVLAL-- 132
Query: 193 EMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNK 252
ML N+Y N ++ G C+ G+A + ++ + L PD F+Y ++I G+C K
Sbjct: 133 -MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGK 191
Query: 253 DVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYT 312
++EK + M GC + V++ LI C+A ++DEA+ + M + YT
Sbjct: 192 ELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYT 251
Query: 313 VVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEK 372
+I G C G F+E+ RG P TY LI CK ++ EASE+ M+E+
Sbjct: 252 SLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIER 311
Query: 373 GLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRA 432
G+ PNV TY LIDG C G + ALQ+L+LM + PNA TYN +I CK V A
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADA 371
Query: 433 MXXXXXXXXXXXXPTLITYNSLIYGQCREGHLDSAYKVLHL-INESGLV-PDQFTYSVFI 490
+ P ITYN L+ G C +G LD A K+L+L + +S PD +Y+ I
Sbjct: 372 VEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALI 431
Query: 491 DTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYT-ALIDGYCKEGKIDDAHSLLERMLSDDC 549
LCK R+ +A ++D L +K + AG+ + T L++ K G ++ A L +++
Sbjct: 432 HGLCKENRLHQALDIYDLLVEK-LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKI 490
Query: 550 LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHR 609
+ NS TY A+IDG + + A L+ KM ++P+V+ Y L+ + KEG D A R
Sbjct: 491 VRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWR 550
Query: 610 LLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669
L ++M PDV ++ I G + AE L+V M+R G+ PD TY+ LI +
Sbjct: 551 LFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFL 610
Query: 670 HLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKH-LSNKKVDE 710
LG + A +M D+G EP H ++K+ +S + D+
Sbjct: 611 KLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDK 652
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 144/429 (33%), Positives = 241/429 (56%)
Query: 192 LEMLDNM-VVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR 250
LE+L+ VP++ T+N MI+G CK G + A +S + + +SPD TY +++ C
Sbjct: 160 LEILEGSGAVPDVITYNVMISGYCKAGEINNA---LSVLDRMSVSPDVVTYNTILRSLCD 216
Query: 251 NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRT 310
+ +++ V M ++ C + ++YT LI C V A+ L M + C P V T
Sbjct: 217 SGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVT 276
Query: 311 YTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRML 370
Y V++ G+C+ GR EA++F N+M + GC+PNV T+ +++ +C + +A +LL ML
Sbjct: 277 YNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADML 336
Query: 371 EKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVH 430
KG P+VVT+N LI+ C++GL+ A+ IL+ M + C PN+ +YN L+ GFCK K +
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMD 396
Query: 431 RAMXXXXXXXXXXXXPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFI 490
RA+ P ++TYN+++ C++G ++ A ++L+ ++ G P TY+ I
Sbjct: 397 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456
Query: 491 DTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCL 550
D L K G+ +A L D + K +K + Y++L+ G +EGK+D+A
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIR 516
Query: 551 PNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRL 610
PN+ T+N+++ GL + R+ A+ + M G KP +YTILIE + EG A L
Sbjct: 517 PNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALEL 576
Query: 611 LDQMVSLGL 619
L+++ + GL
Sbjct: 577 LNELCNKGL 585
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LSL9 | PP445_ARATH | No assigned EC number | 0.5720 | 0.9424 | 0.7519 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 730 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-38 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-38 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-27 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-20 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-20 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 7e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 3e-38
Identities = 105/388 (27%), Positives = 185/388 (47%), Gaps = 16/388 (4%)
Query: 284 CEAKR-VDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSE-ALEFFNEMSARGCEP 341
C+ +R V EA + + PT+ T+ +++ +C + + AL + G +
Sbjct: 416 CKKQRAVKEAFRFAKLIRN----PTLSTFNMLM-SVCASSQDIDGALRVLRLVQEAGLKA 470
Query: 342 NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQIL 401
+ YT LI K KVD E+ + M+ G+ NV T+ ALIDG + G + A
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 402 DLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQN--LSPTLITYNSLIYGQC 459
+M+S N P+ +N LI + V RA +L E+ + + P IT +L+
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 460 REGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEV 519
G +D A +V +I+E + Y++ +++ ++G + A ++D ++KKG+K EV
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKM 579
++AL+D G +D A +L+ + +Y++L+ + ++AL L E +
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 580 TKMGVKPTVYTYTILIEEVLKEGD-FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK 638
+ ++PTV T LI L EG+ A +L +M LGL P+ TY+ + A
Sbjct: 711 KSIKLRPTVSTMNALIT-ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
Query: 639 LDEAEDLIVKMNREGIVPDSVTYTLLIC 666
D DL+ + +GI P L++C
Sbjct: 770 ADVGLDLLSQAKEDGIKP-----NLVMC 792
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 6e-38
Identities = 100/399 (25%), Positives = 175/399 (43%), Gaps = 14/399 (3%)
Query: 249 CR-NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPT 307
C+ + V++ FR ++ ++ L+ ++ +D AL + R + E +
Sbjct: 416 CKKQRAVKEAFRFAKLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD 471
Query: 308 VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLN 367
+ YT +I + G+ E F+EM G E NVHT+ LID + +V +A
Sbjct: 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 368 RMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNN--CSPNARTYNELICGFCK 425
M K + P+ V +NALI + G ++ A +L MK+ P+ T L+
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 426 RKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFT 485
V RA + + E N+ T Y + ++G D A + + + G+ PD+
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 486 YSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERML 545
+S +D G +++A + K+GIK G V Y++L+ A L E +
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 546 SDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFD 605
S P T NALI L ++ +AL ++ +M ++G+ P TY+IL+ ++ D D
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 606 HAHRLLDQMVSLGLKPDVYTYTAFI-------QAYCSIG 637
LL Q G+KP++ + C++G
Sbjct: 772 VGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALG 810
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 3e-36
Identities = 98/424 (23%), Positives = 186/424 (43%), Gaps = 7/424 (1%)
Query: 271 RNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRK-SEALE 329
R Y + + L R+ + +DL M + + Y F C+ R EA
Sbjct: 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR 427
Query: 330 FFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYC 389
F + P + T+ +L+ +D A +L + E GL + Y LI
Sbjct: 428 FAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA 483
Query: 390 KEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLI 449
K G ++A ++ M + N T+ LI G + V +A + +N+ P +
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543
Query: 450 TYNSLIYGQCREGHLDSAYKVL-HLINESGLV-PDQFTYSVFIDTLCKRGRVEEAQVLFD 507
+N+LI + G +D A+ VL + E+ + PD T + G+V+ A+ ++
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 508 SLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRER 567
+ + IK +YT ++ ++G D A S+ + M P+ ++AL+D
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663
Query: 568 KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYT 627
+ +A +++ K G+K +Y+ L+ ++ A L + + S+ L+P V T
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723
Query: 628 AFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687
A I A C +L +A +++ +M R G+ P+++TY++L+ A D+L + +
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783
Query: 688 GCEP 691
G +P
Sbjct: 784 GIKP 787
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-28
Identities = 134/575 (23%), Positives = 228/575 (39%), Gaps = 78/575 (13%)
Query: 154 RVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGC 213
R S ++L N +L +F + V+ +M + +++++N ++ G
Sbjct: 111 RALSSHPSLGVRLG----NAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGY 162
Query: 214 CKVGNVGEAELYVSKIVQAGLSPDTFTY-------------------------------- 241
K G EA +++ AG+ PD +T+
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222
Query: 242 ---TSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRR 298
+LI Y + DV VF MP RR+ +S+ +I G E E L+LF
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT 278
Query: 299 MGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENK 358
M E P + T T VI +G + E + G +V LI
Sbjct: 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338
Query: 359 VDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNE 418
EA ++ +RM K + V++ A+I GY K GL + AL+ LM+ +N SP+ T
Sbjct: 339 WGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394
Query: 419 LICGFCKRKNVHRAMSLLNELLEQ-NLSPTLITYNSLI--YGQCREGHLDSAYKVLHLIN 475
++ ++ + L+EL E+ L ++ N+LI Y +C+ +D A +V H I
Sbjct: 395 VLSACACLGDLDVGVK-LHELAERKGLISYVVVANALIEMYSKCK--CIDKALEVFHNIP 451
Query: 476 ESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID-----GYCK 530
E ++ +++ I L R EA + F + +K V A + G
Sbjct: 452 EKDVI----SWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALM 506
Query: 531 EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYT 590
GK AH L + D LP NAL+D R ++ A K V +
Sbjct: 507 CGKEIHAHVLRTGIGFDGFLP-----NALLDLYVRCGRMNYAWNQFNSHEK-----DVVS 556
Query: 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650
+ IL+ + G A L ++MV G+ PD T+ + + A G + + + M
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 651 RE-GIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684
+ I P+ Y ++ G + A++ + +M
Sbjct: 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-27
Identities = 103/450 (22%), Positives = 175/450 (38%), Gaps = 97/450 (21%)
Query: 205 TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMM 264
T++ ++ C + ++ + + +G PD + ++L + + + R+F M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 265 PKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVI-----FGLC 319
P+ RN S+ +I GL +A EA LFR M ED RT+ V++ G
Sbjct: 185 PE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 320 RVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVV 379
R G++ +H C+ K G+ +
Sbjct: 241 RAGQQ------------------LHC------CVLK----------------TGVVGDTF 260
Query: 380 TYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNEL 439
ALID Y K G +E A + D M P
Sbjct: 261 VSCALIDMYSKCGDIEDARCVFDGM------PEK-------------------------- 288
Query: 440 LEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRV 499
T + +NS++ G G+ + A + + + +SG+ DQFT+S+ I + +
Sbjct: 289 -------TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341
Query: 500 EEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLP--NSYTYN 557
E A+ L + G V TAL+D Y K G+++DA ++ +RM P N ++N
Sbjct: 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PRKNLISWN 395
Query: 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMV-S 616
ALI G + +A+ + E+M GV P T+ ++ G + + M +
Sbjct: 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455
Query: 617 LGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646
+KP Y I+ G LDEA +I
Sbjct: 456 HRIKPRAMHYACMIELLGREGLLDEAYAMI 485
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 5e-25
Identities = 139/552 (25%), Positives = 223/552 (40%), Gaps = 77/552 (13%)
Query: 162 FSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGE 221
FS + V GY +K DE +Y ML V P++YTF ++ C + ++
Sbjct: 153 FSWNVLVGGY-------AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205
Query: 222 AELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIH 281
+ +V+ G D +LI Y + DV VF MP RR+ +S+ +I
Sbjct: 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMIS 261
Query: 282 GLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP 341
G E E L+LF M E P + T T VI +G + E + G
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 342 NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQIL 401
+V LI EA ++ +RM K + V++ A+I GY K GL + AL+
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETY 377
Query: 402 DLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQ-NLSPTLITYNSLI--YGQ 458
LM+ +N SP+ T ++ ++ + L +EL E+ L ++ N+LI Y +
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKL-HELAERKGLISYVVVANALIEMYSK 436
Query: 459 CREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGE 518
C+ +D A +V H I E ++ +++ I L R EA + F + +K
Sbjct: 437 CK--CIDKALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNS 489
Query: 519 VIYTALID-----GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEAL 573
V A + G GK AH L + D LPN AL+D LY
Sbjct: 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLD-LY--------- 534
Query: 574 LLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633
++ G ++A +Q S + DV ++ + Y
Sbjct: 535 -------------------------VRCGRMNYA---WNQFNSH--EKDVVSWNILLTGY 564
Query: 634 CSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM-FDAGCEPS 692
+ GK A +L +M G+ PD VT+ L+CA + G++ + M P+
Sbjct: 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624
Query: 693 HHTYAFLIKHLS 704
YA ++ L
Sbjct: 625 LKHYACVVDLLG 636
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 6e-25
Identities = 88/354 (24%), Positives = 149/354 (42%), Gaps = 24/354 (6%)
Query: 356 ENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNART 415
+ K E + NR+L G + + L++ K GL LD+ K + A+
Sbjct: 367 KRKSPEYIDAYNRLLRDGRIKDCID---LLEDMEKRGL-------LDMDKIYH----AKF 412
Query: 416 YNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLIN 475
+ C K++ V A + PTL T+N L+ +D A +VL L+
Sbjct: 413 FK--ACK--KQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQ 464
Query: 476 ESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKID 535
E+GL D Y+ I T K G+V+ +F + G++A + ALIDG + G++
Sbjct: 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524
Query: 536 DAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG--VKPTVYTYTI 593
A M S + P+ +NALI + V A ++ +M + P T
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584
Query: 594 LIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653
L++ G D A + + +K YT + + G D A + M ++G
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 654 IVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKK 707
+ PD V ++ L+ H G + AF++L+ G + +Y+ L+ SN K
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-25
Identities = 83/354 (23%), Positives = 165/354 (46%), Gaps = 7/354 (1%)
Query: 353 LCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCK-EGLMEAALQILDLMKSNNCSP 411
L ++ ++ + +LL M ++GL Y+A CK + ++ A + L+++ P
Sbjct: 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----P 435
Query: 412 NARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVL 471
T+N L+ +++ A+ +L + E L Y +LI + G +D+ ++V
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 472 HLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKE 531
H + +G+ + T+ ID + G+V +A + + K +K V++ ALI +
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555
Query: 532 GKIDDAHSLLERMLSDD--CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVY 589
G +D A +L M ++ P+ T AL+ +V A + + + + +K T
Sbjct: 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
Query: 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKM 649
YTI + ++GD+D A + D M G+KPD ++A + G LD+A +++
Sbjct: 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675
Query: 650 NREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703
++GI +V+Y+ L+ A ++ A ++ + + P+ T LI L
Sbjct: 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 5e-23
Identities = 84/352 (23%), Positives = 154/352 (43%), Gaps = 21/352 (5%)
Query: 350 IDCLCKENKVDEASELLNRMLEKGLFP---NVVTYNALIDGYCKEGLMEAALQILDLMKS 406
I+ L + EA EL +LE G P TY+AL++ + + ++S
Sbjct: 94 IEKLVACGRHREALELF-EILEAG-CPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151
Query: 407 NNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS 466
+ P+ N ++ K + A L +E+ E+NL ++ ++I G G+
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYRE 207
Query: 467 AYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526
A+ + + E G + T+ V + G Q L + K G+ + ALID
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYT--YNALIDGLYRERKVQEALLLVEKMTKMGV 584
Y K G I+DA + D +P T +N+++ G +EAL L +M GV
Sbjct: 268 MYSKCGDIEDARCVF------DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321
Query: 585 KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAED 644
+T++I+I + +HA + ++ G D+ TA + Y G++++A +
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
Query: 645 LIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTY 696
+ +M R+ + +++ LI Y + G A ++ +RM G P+H T+
Sbjct: 382 VFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 3e-20
Identities = 89/351 (25%), Positives = 152/351 (43%), Gaps = 24/351 (6%)
Query: 353 LCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPN 412
LC ++++A +LL M E + + Y AL + +E ++ S++ S
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 413 ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLH 472
R N ++ F + + A + ++ E++ L ++N L+ G + G+ D A + H
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERD----LFSWNVLVGGYAKAGYFDEALCLYH 176
Query: 473 LINESGLVPDQFTYSVFIDTLC------KRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526
+ +G+ PD +T+ + T C RGR A V+ + G + + ALI
Sbjct: 177 RMLWAGVRPDVYTFPCVLRT-CGGIPDLARGREVHAHVV-----RFGFELDVDVVNALIT 230
Query: 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKP 586
Y K G + A + +RM DC+ ++NA+I G + + E L L M ++ V P
Sbjct: 231 MYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTMRELSVDP 286
Query: 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646
+ T T +I GD + +V G DV + IQ Y S+G EAE +
Sbjct: 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346
Query: 647 VKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA 697
+M + D+V++T +I Y GL A + M P T A
Sbjct: 347 SRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 82.8 bits (206), Expect = 7e-20
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 376 PNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCK 425
P+VVTYN LIDGYCK+G +E AL++ + MK PN TY+ LI G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 2e-19
Identities = 28/50 (56%), Positives = 36/50 (72%)
Query: 341 PNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCK 390
P+V TY LID CK+ KV+EA +L N M ++G+ PNV TY+ LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 3e-19
Identities = 85/387 (21%), Positives = 165/387 (42%), Gaps = 20/387 (5%)
Query: 322 GRKSEALEFFNEMSARGC-EPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVT 380
GR EALE F + A TY L++ + + + G P+
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 381 YNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELL 440
N ++ + K G++ A ++ D M N + ++ +I G N A +L E+
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYREAFALFREMW 216
Query: 441 EQNLSPTLITYNSLIYGQCREGHLDSAY--KVLHL-INESGLVPDQFTYSVFIDTLCKRG 497
E T+ ++ G SA + LH + ++G+V D F ID K G
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLG---SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 498 RVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYN 557
+E+A+ +FD + +K V + +++ GY G ++A L M + +T++
Sbjct: 274 DIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329
Query: 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL 617
+I R ++ A + + G + T L++ K G + A + D+M
Sbjct: 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-- 387
Query: 618 GLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSA 677
+ ++ ++ A I Y + G+ +A ++ +M EG+ P+ VT+ ++ A + GL
Sbjct: 388 --RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 678 FDVLKRMF-DAGCEPSHHTYAFLIKHL 703
+++ + M + +P YA +I+ L
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELL 472
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 8e-19
Identities = 125/598 (20%), Positives = 222/598 (37%), Gaps = 79/598 (13%)
Query: 23 KYPFCKSSSISSLPLPLDPDPPDLPSQIFTILSTHPTTWQRHTSITKLIPLLSPSHISSL 82
K PF S SS+ L P P P I +S T I K L S I L
Sbjct: 40 KTPFSSISC-SSVEQGLKPRPRLKPEPIRIEVSESKDARLDDTQIRKSGVSLC-SQIEKL 97
Query: 83 FSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLD 142
+ AL+ + F +Y +L+ ++C
Sbjct: 98 -VACGRHREALELFEILEAGCPFTLPASTYDALV--------------------EACIAL 136
Query: 143 KEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPN 202
K I V V SG E + + LLM + K ++ + +R++ EM + N
Sbjct: 137 KSIRCVKAVYWHVESSGFEPDQYMMNR---VLLMHV-KCGMLIDARRLFDEMPER----N 188
Query: 203 IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFM 262
+ ++ T+I G GN EA ++ + G + T+ ++ G ++
Sbjct: 189 LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248
Query: 263 MMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG 322
+ K G + LI + +++A +F M E T + ++ G G
Sbjct: 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHG 304
Query: 323 RKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYN 382
EAL + EM G + T++++I + ++ A + ++ G ++V
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 383 ALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQ 442
AL+D Y K G ME A + D M RKN
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRM--------------------PRKN-------------- 390
Query: 443 NLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEA 502
LI++N+LI G G A ++ + G+ P+ T+ + G E+
Sbjct: 391 -----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 503 QVLFDSL-EKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561
+F S+ E IK + Y +I+ +EG +D+A++++ R P + AL+
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502
Query: 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL 619
+ ++ L EK+ MG + + Y +L+ G A ++++ + GL
Sbjct: 503 ACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.4 bits (192), Expect = 7e-18
Identities = 28/50 (56%), Positives = 36/50 (72%)
Query: 306 PTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCK 355
P V TY +I G C+ G+ EAL+ FNEM RG +PNV+TY++LID LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 6e-17
Identities = 112/507 (22%), Positives = 186/507 (36%), Gaps = 66/507 (13%)
Query: 194 MLDNMVVPNIYTFNTMI-----NGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGY 248
+ D M + ++N MI NG C G EL+ + + + + PD T TS+I
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEG----LELFFT-MRELSVDPDLMTITSVISAC 298
Query: 249 CRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTV 308
D G + + K G + +LI EA +F RM + + V
Sbjct: 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM---ETKDAV 355
Query: 309 RTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPN-VHTYTVLIDCLCKENKVDEASELLN 367
++T +I G + G +ALE + M P+ + +VL C C +D +L
Sbjct: 356 -SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDLDVGVKLHE 413
Query: 368 RMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRK 427
KGL VV NALI+ Y K ++ AL++ + + ++ +I G
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI----SWTSIIAGLRLNN 469
Query: 428 NVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHL------INESGLVP 481
A+ ++L L P +T + + R G L K +H I G +P
Sbjct: 470 RCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCG-KEIHAHVLRTGIGFDGFLP 527
Query: 482 D-----------------QF--------TYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKA 516
+ QF ++++ + G+ A LF+ + + G+
Sbjct: 528 NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587
Query: 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSD-DCLPNSYTYNALIDGLYRERKVQEALLL 575
EV + +L+ + G + M PN Y ++D L R K+ EA
Sbjct: 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647
Query: 576 VEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS---LGLKP-DVYTYTAFIQ 631
+ KM + P + L+ H H L ++ + L P V Y
Sbjct: 648 INKMP---ITPDPAVWGALL-----NACRIHRHVELGELAAQHIFELDPNSVGYYILLCN 699
Query: 632 AYCSIGKLDEAEDLIVKMNREGIVPDS 658
Y GK DE + M G+ D
Sbjct: 700 LYADAGKWDEVARVRKTMRENGLTVDP 726
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 1e-15
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR 565
V Y LIDGYCK+GK+++A L M PN YTY+ LIDGL +
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 5e-15
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 236 PDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLC 284
PD TY +LI GYC+ VE+ ++F M K+G + N +Y+ LI GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 1e-14
Identities = 111/478 (23%), Positives = 188/478 (39%), Gaps = 41/478 (8%)
Query: 207 NTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKD-VEKGFRVFMM-- 263
N+ + C G + +A + + + + D Y +L C K VE+G RV
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113
Query: 264 --MPKKGCRRNE------VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVI 315
P G R V + L+H A +F +M E D + ++ V++
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVH----------AWYVFGKMPERD----LFSWNVLV 159
Query: 316 FGLCRVGRKSEALEFFNEMSARGCEPNVHTY-TVLIDCLCKENKVDEASELLNRMLEKGL 374
G + G EAL ++ M G P+V+T+ VL C + E+ ++ G
Sbjct: 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA-RGREVHAHVVRFGF 218
Query: 375 FPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMS 434
+V NALI Y K G + +A + D M +C ++N +I G+ + +
Sbjct: 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLE 274
Query: 435 LLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLC 494
L + E ++ P L+T S+I G ++ + ++G D + I
Sbjct: 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334
Query: 495 KRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSY 554
G EA+ +F +E K V +TA+I GY K G D A M D+ P+
Sbjct: 335 SLGSWGEAEKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390
Query: 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQM 614
T +++ + + L E + G+ V LIE K D A + +
Sbjct: 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450
Query: 615 VSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672
+ DV ++T+ I + EA +M + P+SVT + A A +G
Sbjct: 451 P----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIG 503
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.4 bits (166), Expect = 2e-14
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 551 PNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILI 595
P+ TYN LIDG ++ KV+EAL L +M K G+KP VYTY+ILI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.4 bits (166), Expect = 2e-14
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 272 NEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR 320
+ V+Y LI G C+ +V+EAL LF M + +P V TY+++I GLC+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 4e-14
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 586 PTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634
P V TY LI+ K+G + A +L ++M G+KP+VYTY+ I C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 6e-14
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 621 PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH 670
PDV TY I YC GK++EA L +M + GI P+ TY++LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 2e-13
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 201 PNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR 250
P++ T+NT+I+G CK G V EA +++ + G+ P+ +TY+ LI G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 1e-12
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 446 PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCK 495
P ++TYN+LI G C++G ++ A K+ + + + G+ P+ +TYS+ ID LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 411 PNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCR 460
P+ TYN LI G+CK+ V A+ L NE+ ++ + P + TY+ LI G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 7e-12
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 372 KGLFPNVVTYNALIDGYCKEGLMEAALQILDLMK 405
KGL P+VVTYN LIDG C+ G ++ A+++LD M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 1e-11
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 481 PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCK 530
PD TY+ ID CK+G+VEEA LF+ ++K+GIK Y+ LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 58.5 bits (143), Expect = 2e-11
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 337 RGCEPNVHTYTVLIDCLCKENKVDEASELLNRM 369
+G +P+V TY LID LC+ +VDEA ELL+ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 5e-10
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCK 215
V YNTL+ K V+E +++ EM + PN+YT++ +I+G CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 656 PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSN 705
PD VTY LI Y G + A + M G +P+ +TY+ LI L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 2e-09
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 267 KGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRM 299
KG + + V+Y LI GLC A RVDEA++L M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 9e-09
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 379 VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA 413
VTYN LIDG CK G +E AL++ MK P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 2e-08
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 512 KGIKAGEVIYTALIDGYCKEGKIDDAHSLLERM 544
KG+K V Y LIDG C+ G++D+A LL+ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 4e-08
Identities = 59/250 (23%), Positives = 99/250 (39%), Gaps = 28/250 (11%)
Query: 452 NSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEA-----QVLF 506
NS + C G L+ A K+L + E + D+ Y LC+ R E
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALF-RLCEWKRAVEEGSRVCSRAL 113
Query: 507 DSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRE 566
S G++ G A++ + + G++ A + +M D +++N L+ G +
Sbjct: 114 SSHPSLGVRLG----NAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAKA 165
Query: 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEV-----LKEGDFDHAHRLLDQMVSLGLKP 621
EAL L +M GV+P VYT+ ++ L G HAH +V G +
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH-----VVRFGFEL 220
Query: 622 DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVL 681
DV A I Y G + A + +M R D +++ +I Y G ++
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELF 276
Query: 682 KRMFDAGCEP 691
M + +P
Sbjct: 277 FTMRELSVDP 286
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 5e-08
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 379 VTYNALIDGYCKEGLMEAALQILDLMKSNNC 409
VTYN+LI GYCK G +E AL++ MK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 8e-08
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 302 DDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMS 335
+P V TY +I GLCR GR EA+E +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 344 HTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNV 378
TY LID LCK +V+EA EL M E+G+ P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS 553
V Y LIDG CK G++++A L + M P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 618 GLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKM 649
GLKPDV TY I C G++DEA +L+ +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 233 GLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMP 265
GL PD TY +LI G CR V++ + M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 6e-07
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 477 SGLVPDQFTYSVFIDTLCKRGRVEEAQVLFD 507
GL PD TY+ ID LC+ GRV+EA L D
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 9e-07
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDC 549
V Y +LI GYCK GK+++A L + M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 1e-06
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 407 NNCSPNARTYNELICGFCKRKNVHRAMSLLNE 438
P+ TYN LI G C+ V A+ LL+E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 442 QNLSPTLITYNSLIYGQCREGHLDSAYKVL 471
+ L P ++TYN+LI G CR G +D A ++L
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 2e-06
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 197 NMVVPNIYTFNTMINGCCKVGNVGEAE 223
+ P++ T+NT+I+G C+ G V EA
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAV 27
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 274 VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTV 308
V+Y LI GLC+A RV+EAL+LF+ M E P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 345 TYTVLIDCLCKENKVDEASELLNRMLEKGL 374
TY LI CK K++EA EL M EKG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 309 RTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNV 343
TY +I GLC+ GR EALE F EM RG EP+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 4e-06
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 547 DDCLPNSYTYNALIDGLYRERKVQEALLLVEKM 579
P+ TYN LIDGL R +V EA+ L+++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 239 FTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNE 273
TY +LI G C+ VE+ +F M ++G +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 7e-06
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 582 MGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMV 615
G+KP V TY LI+ + + G D A LLD+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 8e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 239 FTYTSLILGYCRNKDVEKGFRVFMMMPKKGC 269
TY SLI GYC+ +E+ +F M +KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-06
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 274 VSYTNLIHGLCEAKRVDEALDLFRRMGEDDC 304
V+Y +LI G C+A +++EAL+LF+ M E
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (111), Expect = 1e-05
Identities = 52/262 (19%), Positives = 86/262 (32%), Gaps = 5/262 (1%)
Query: 391 EGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQN-LSPTLI 449
+ AL IL + + + + A+ LL E LE S
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 450 TYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQF-TYSVFIDTLCKRGRVEEAQVLFDS 508
L + G L+ A ++L E L+P+ L G+ EEA L +
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 509 LEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSY--TYNALIDGLYRE 566
+ + G ++A L E+ L D N AL L
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTY 626
+ +EAL L+EK K+ L LK G ++ A ++ + L +
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEAL 239
Query: 627 TAFIQAYCSIGKLDEAEDLIVK 648
+G+ +EA + + K
Sbjct: 240 YNLALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 204 YTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDT 238
T+NT+I+G CK G V EA ++ + G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTV 588
TYN LIDGL + +V+EAL L ++M + G++P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 624 YTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDS 658
TY I C G+++EA +L +M GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV 623
TY LI+ + K G + A L +M G++PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 624 YTYTAFIQAYCSIGKLDEAEDLIVKMNREGI 654
TY + I YC GKL+EA +L +M +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 7e-05
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 310 TYTVVIFGLCRVGRKSEALEFFNEMSARGC 339
TY +I G C+ G+ EALE F EM +G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 9e-05
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 414 RTYNELICGFCKRKNVHRAMSLLNELLEQNLSPT 447
TYN LI G CK V A+ L E+ E+ + P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGV 584
TYN+LI G + K++EAL L ++M + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (103), Expect = 1e-04
Identities = 37/174 (21%), Positives = 60/174 (34%), Gaps = 3/174 (1%)
Query: 272 NEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFF 331
+ NL L + +EAL+L + D P + + + L +G EALE +
Sbjct: 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELY 153
Query: 332 NEM--SARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYC 389
+ L L + +EA ELL + L+ + L Y
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213
Query: 390 KEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQN 443
K G E AL+ + + NA L + A+ L + LE +
Sbjct: 214 KLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELD 266
|
Length = 291 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 378 VVTYNALIDGYCKEGLMEAALQILDLMKSNNCSP 411
+ TYNAL+ K G + AL +L+ MK++ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 343 VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFP 376
+ TY L+ L K D A +L M GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 449 ITYNSLIYGQCREGHLDSAYKVLHLINESGLVPD 482
+TYN+LI G C+ G ++ A ++ + E G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 413 ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSP 446
TYN L+ K + A+++L E+ L P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 659 VTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPS 692
VTY LI G + A ++ K M + G EP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (97), Expect = 7e-04
Identities = 45/214 (21%), Positives = 84/214 (39%), Gaps = 4/214 (1%)
Query: 500 EEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS-YTYNA 558
E ++L ++LE + L K G++++A LLE+ L + LPN
Sbjct: 41 EALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLN 100
Query: 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG 618
L L K +EAL L+EK + P + + + + + GD++ A L ++ + L
Sbjct: 101 LGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELD 160
Query: 619 LKPDVY--TYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYS 676
+ + A ++G+ +EA +L+ K + D+ L Y LG
Sbjct: 161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220
Query: 677 AFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVDE 710
A + ++ + + L L E
Sbjct: 221 ALEYYEKALEL-DPDNAEALYNLALLLLELGRYE 253
|
Length = 291 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 7e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 308 VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP 341
+ TY ++ L + G AL EM A G +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 484 FTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI 514
TY+ I CK G++EEA LF +++KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 204 YTFNTMINGCCKVGNVGEAELYVSKIVQAGL 234
T+N++I+G CK G + EA ++ + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 659 VTYTLLICAYAHLGLIYSAFDVLKRMFDAGC 689
VTY LI Y G + A ++ K M + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 203 IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSP 236
+ T+N ++ K G+ A + ++ +GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.004
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 653 GIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684
G+ PD VTY LI G + A ++L M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 484 FTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIK 515
TY+ ID LCK GRVEEA LF ++++GI+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 730 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.65 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.64 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.64 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.62 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.59 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.49 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.48 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.4 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.31 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.31 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.24 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.22 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.19 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.13 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.1 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.06 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.03 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.03 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.02 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.99 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.92 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.92 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.8 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.79 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.78 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.76 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.73 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.7 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.58 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.52 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.51 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.5 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.5 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.44 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.43 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.35 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.16 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.06 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.05 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.96 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.91 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.9 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.83 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.78 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.78 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.78 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.78 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.75 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.74 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.72 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.72 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.71 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.7 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.7 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.68 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.68 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.67 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.66 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.65 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.58 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.56 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.55 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.54 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.54 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.51 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.51 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.5 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.48 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.46 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.45 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.41 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.4 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.4 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.4 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.38 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.37 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.36 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.34 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.31 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.28 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.27 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.27 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.23 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.22 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.17 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.11 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.1 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.08 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.04 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.0 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.98 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.97 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.97 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.84 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.83 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.82 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.78 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.76 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.74 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.73 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.73 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.68 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.59 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.55 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.43 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.4 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.4 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.37 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.31 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.27 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.25 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.16 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.12 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.1 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.09 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.08 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.05 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.95 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.95 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.95 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.8 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.76 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.7 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.67 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.55 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.48 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.38 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.31 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.23 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.18 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.14 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.11 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.08 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.06 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.05 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.04 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.04 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.7 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.68 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.58 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.53 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.44 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.43 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.42 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.99 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.97 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.92 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.9 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.86 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.82 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.57 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.55 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.45 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.4 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.15 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.07 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.95 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.72 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.69 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.42 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.29 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.95 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.87 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.8 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.75 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 91.68 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.61 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.44 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.43 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.34 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.74 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.58 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.58 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.56 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.53 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.31 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.14 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.09 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.01 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.94 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.86 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.75 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.66 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.26 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.24 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.14 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.13 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.09 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.68 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.56 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.27 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.86 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 87.71 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.32 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.09 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.07 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.86 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.29 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.05 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.58 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.2 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.07 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.93 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.57 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.08 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.99 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.67 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.53 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.45 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.39 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 82.81 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 82.62 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.26 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 82.12 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 81.97 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 81.69 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 81.5 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.2 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.14 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.37 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=692.76 Aligned_cols=611 Identities=21% Similarity=0.283 Sum_probs=575.3
Q ss_pred hhhhhccCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc---------------ccChh
Q 004791 79 ISSLFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKS---------------CSLDK 143 (730)
Q Consensus 79 ~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~---------------~~~~~ 143 (730)
+...+...+.++.|+.+|+.+.. .|.+|+..+|..++..+.+.+.++.+.+++..+++. +.+.+
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g 135 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC
Confidence 33444567889999999999864 567899999999999999999999999888665543 34455
Q ss_pred hHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 004791 144 EILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAE 223 (730)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 223 (730)
+...++.+|.+|. .+|+++||.+|.+|++.|++++|+.+|++|...|+.||.+||+.++++|++.+++..+.
T Consensus 136 ~~~~A~~~f~~m~--------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 136 ELVHAWYVFGKMP--------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred ChHHHHHHHhcCC--------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 6667777777775 67999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004791 224 LYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDD 303 (730)
Q Consensus 224 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 303 (730)
+++..|.+.|+.||+.++|+|+.+|++.|++++|.++|++|.. +|.++||++|.+|++.|++++|+++|++|.+.|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999987 899999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004791 304 CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNA 383 (730)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 383 (730)
+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+|++
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999964 69999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 384 LIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGH 463 (730)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 463 (730)
+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+.+|++.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004791 464 LDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLER 543 (730)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 543 (730)
+++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|.++.+.+++..
T Consensus 440 ~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 440 IDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 9999999999875 5788999999999999999999999999986 5899999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 544 MLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV 623 (730)
Q Consensus 544 ~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 623 (730)
+.+.|+.+|..++++|+++|++.|++++|.++|+++ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999999987 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004791 624 YTYTAFIQAYCSIGKLDEAEDLIVKMN-REGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKH 702 (730)
Q Consensus 624 ~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 702 (730)
.||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|.+++++| .++||..+|.+|+.+
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~a 666 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA 666 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHH
Confidence 999999999999999999999999999 6899999999999999999999999999999999 479999999999999
Q ss_pred HHcCChhhhhhhccchh
Q 004791 703 LSNKKVDERKQQCDGIL 719 (730)
Q Consensus 703 l~~~~~~e~~~~~~~~l 719 (730)
+...++.+.++.+-+.+
T Consensus 667 c~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 667 CRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHcCChHHHHHHHHHH
Confidence 99888887766554443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-75 Score=663.35 Aligned_cols=607 Identities=17% Similarity=0.217 Sum_probs=535.4
Q ss_pred ccCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHH-----------HHHHHcccChhhHHHHHHHH
Q 004791 84 SLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIV-----------FLMLKSCSLDKEILFVLDFL 152 (730)
Q Consensus 84 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~-----------~~~~~~~~~~~~~~~~~~~~ 152 (730)
...++...+..++..+.+ .+..++...++.+++.|++.|+++.|.+++ ..++..+...+....++++|
T Consensus 97 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f 175 (857)
T PLN03077 97 EWKRAVEEGSRVCSRALS-SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLY 175 (857)
T ss_pred hhCCCHHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHH
Confidence 345667788888887764 355678889999999999999999998875 44566777778888889999
Q ss_pred HHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004791 153 RRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQA 232 (730)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 232 (730)
.+|...| +.||.++|+.+++++++.++++.+.+++..|++.|+.||..+++.++.+|++.|++++|..+|++|..
T Consensus 176 ~~M~~~g----~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~- 250 (857)
T PLN03077 176 HRMLWAG----VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR- 250 (857)
T ss_pred HHHHHcC----CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-
Confidence 9888655 78999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH
Q 004791 233 GLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYT 312 (730)
Q Consensus 233 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 312 (730)
+|..+||++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+
T Consensus 251 ---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 251 ---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred ---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 004791 313 VVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEG 392 (730)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 392 (730)
+++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 99999999999999999999886 36888999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 004791 393 LMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLH 472 (730)
Q Consensus 393 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 472 (730)
++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|.++|+
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865 578899999999999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 004791 473 LINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN 552 (730)
Q Consensus 473 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 552 (730)
+|.. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .+|
T Consensus 480 ~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d 553 (857)
T PLN03077 480 QMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKD 553 (857)
T ss_pred HHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCC
Confidence 9976 5889999999999999999999999999999999999999999999999999999999999999887 478
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 004791 553 SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMV-SLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 553 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~ 631 (730)
..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.+++
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 6788999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCChhh
Q 004791 632 AYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH-TYAFLIKHLSNKKVDE 710 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~l~~~~~~e 710 (730)
+|++.|++++|.+++++|. +.||..+|.+|+.+|...|+.+.+....+++.+ ++|+.. .|..|.+.|...|..+
T Consensus 634 ~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWD 708 (857)
T ss_pred HHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChH
Confidence 9999999999999999884 689999999999999999999999888888876 466554 4555666777777766
Q ss_pred hhhhccch
Q 004791 711 RKQQCDGI 718 (730)
Q Consensus 711 ~~~~~~~~ 718 (730)
++.++-+.
T Consensus 709 ~a~~vr~~ 716 (857)
T PLN03077 709 EVARVRKT 716 (857)
T ss_pred HHHHHHHH
Confidence 65544433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-72 Score=622.86 Aligned_cols=525 Identities=18% Similarity=0.282 Sum_probs=501.8
Q ss_pred cccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004791 164 LKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMV-VPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYT 242 (730)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 242 (730)
..++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|..++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 356788899999999999999999999999999986 46777888999999999999999999999864 8999999
Q ss_pred HHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 004791 243 SLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG 322 (730)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 322 (730)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 004791 323 RKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLE--KGLFPNVVTYNALIDGYCKEGLMEAALQI 400 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 400 (730)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 004791 401 LDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLV 480 (730)
Q Consensus 401 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 480 (730)
|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004791 481 PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALI 560 (730)
Q Consensus 481 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 560 (730)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHHC
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK----E-------------------GDFDHAHRLLDQMVSL 617 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~ 617 (730)
.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999876432 1 2246799999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 618 GLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 618 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|++|++++.+. .++|..++++|.+.|+.|+..
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999999999999999999999888889999999999998432 468999999999999999985
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-71 Score=612.98 Aligned_cols=524 Identities=20% Similarity=0.277 Sum_probs=487.5
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHH
Q 004791 107 HSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDE 186 (730)
Q Consensus 107 ~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (730)
++...|..++..+++.|++++|.++++.|..... ++++..+++.++..|.+.|.+++
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv-----------------------v~~~~v~~~~li~~~~~~g~~~e 424 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL-----------------------LDMDKIYHAKFFKACKKQRAVKE 424 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC-----------------------CCchHHHHHHHHHHHHHCCCHHH
Confidence 4566777788888888888888777766653211 35678888999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchh
Q 004791 187 MKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPK 266 (730)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (730)
|+.+|+.|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+
T Consensus 425 Al~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~ 500 (1060)
T PLN03218 425 AFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500 (1060)
T ss_pred HHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 9999998864 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChh
Q 004791 267 KGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA--RGCEPNVH 344 (730)
Q Consensus 267 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~ 344 (730)
.|+.||.++|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..
T Consensus 501 ~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 67899999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHH
Q 004791 345 TYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFC 424 (730)
Q Consensus 345 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 424 (730)
+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 004791 425 KRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQV 504 (730)
Q Consensus 425 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 504 (730)
+.|++++|.+++++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c--------------
Q 004791 505 LFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR----E-------------- 566 (730)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------- 566 (730)
+|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|++++..|.+ .
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~ 820 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGR 820 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999876432 1
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 567 -----RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 567 -----~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++.+. .++
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~ 898 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPR 898 (1060)
T ss_pred cccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHH
Confidence 1246799999999999999999999999999999999999999999998888889999999999998543 468
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 004791 642 AEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~~~ 659 (730)
|..++++|.+.|+.|+..
T Consensus 899 A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 899 AFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHcCCCCCcc
Confidence 999999999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=566.95 Aligned_cols=514 Identities=18% Similarity=0.305 Sum_probs=476.1
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNM-VVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTS 243 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 243 (730)
..+..+|+.+|..|.+.|++++|+.+|+.|...+ +.||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4566789999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 004791 244 LILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGR 323 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 323 (730)
|+.+|++.|++++|.++|++|.+ ||.++||+++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 004791 324 KSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDL 403 (730)
Q Consensus 324 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 403 (730)
.+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|.+ +|..+||++|.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999965 5999999999999999999999999999
Q ss_pred HHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 004791 404 MKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQ 483 (730)
Q Consensus 404 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 483 (730)
|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+++.|+.+|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864 688
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 004791 484 FTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLS-DDCLPNSYTYNALIDG 562 (730)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~ 562 (730)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 5889999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 642 (730)
|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.++. +..+|..|+++|++.|++++|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHH
Confidence 99999999999998875 56899999999999999999999999999999865432 567999999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHH-------HHHHh----cCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 643 EDLIVKMNREGIVPD-SVTYTLLI-------CAYAH----LGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~-~~~~~~l~-------~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
.+++++|.+.|+... ..+|..+. .+-.. ..-++...++.++|.+.|+.||..
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 999999999997643 22332111 00000 112455667888899999999864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-64 Score=556.94 Aligned_cols=475 Identities=21% Similarity=0.302 Sum_probs=456.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHH
Q 004791 200 VPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAG-LSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTN 278 (730)
Q Consensus 200 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 278 (730)
..+..+|+.+|.+|.+.|++++|+.+|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4567789999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 004791 279 LIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENK 358 (730)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 358 (730)
++.+|++.|++++|.++|++|.+ ||..+|++++.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999974 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 359 VDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNE 438 (730)
Q Consensus 359 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 438 (730)
.+.+.+++..+.+.|+.+|..+|++|+++|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 46899999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH
Q 004791 439 LLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGE 518 (730)
Q Consensus 439 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 518 (730)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++++|++.|++++|.++|++|.+ +|.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999965 588
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK-MGVKPTVYTYTILIEE 597 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~~ 597 (730)
.+|+.||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|.+.|.+++|.++|++|.+ .|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 6999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIYS 676 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~ 676 (730)
|++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|..+++++.+ +.| +..+|..|+++|++.|++++
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHH
Confidence 99999999999999876 5789999999999999999999999999999986 446 47899999999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 004791 677 AFDVLKRMFDAGCEP 691 (730)
Q Consensus 677 A~~~~~~m~~~g~~p 691 (730)
|.+++++|.+.|+.+
T Consensus 547 A~~v~~~m~~~g~~k 561 (697)
T PLN03081 547 AAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHcCCcc
Confidence 999999999999853
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=351.90 Aligned_cols=610 Identities=14% Similarity=0.035 Sum_probs=519.7
Q ss_pred ccCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChh--------------hHHHHH
Q 004791 84 SLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDK--------------EILFVL 149 (730)
Q Consensus 84 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ 149 (730)
...++++.|+..|..+.... +.....+..+..++...|++++|...+..++...+... +...+.
T Consensus 272 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 272 FQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 36788999999998887543 23344556667778889999999999988876554332 233344
Q ss_pred HHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004791 150 DFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKI 229 (730)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 229 (730)
..+..+... .+.+...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++++
T Consensus 350 ~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 423 (899)
T TIGR02917 350 ATLSPALGL-----DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETA 423 (899)
T ss_pred HHHHHHHhc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 444443322 24567889999999999999999999999998864 235667888889999999999999999999
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh
Q 004791 230 VQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVR 309 (730)
Q Consensus 230 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 309 (730)
.+.... .......++..+.+.|++++|..+++.+.. ..+.+..+|..+...+...|++++|.+.|+++.+.+ +.+..
T Consensus 424 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 500 (899)
T TIGR02917 424 AQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEK-KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFP 500 (899)
T ss_pred HhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHH
Confidence 887533 345566788899999999999999999987 345678899999999999999999999999998765 45677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 310 TYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYC 389 (730)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 389 (730)
.+..++..+...|++++|.+.|+++...++. +..++..+...+.+.|+.++|...++++.+.+. .+...+..++..|.
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHH
Confidence 8888999999999999999999999987654 788899999999999999999999999988754 36778888999999
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHH
Q 004791 390 KEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYK 469 (730)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 469 (730)
+.|++++|.++++.+.+.. +.+..+|..++..+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus 579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998764 5678899999999999999999999999998764 3467788899999999999999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004791 470 VLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC 549 (730)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 549 (730)
.++++.+.. +.+..++..++..+...|++++|..+++.+.+..+. +...+..+...+.+.|++++|...++++...+
T Consensus 657 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 733 (899)
T TIGR02917 657 SLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA- 733 (899)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 999998764 346788999999999999999999999999988654 77788899999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004791 550 LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAF 629 (730)
Q Consensus 550 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 629 (730)
|+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+..+ .+...+..+
T Consensus 734 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l 810 (899)
T TIGR02917 734 -PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNL 810 (899)
T ss_pred -CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 555788889999999999999999999999865 67888999999999999999999999999998764 478899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCChh
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVD 709 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~~ 709 (730)
+..+...|+ .+|+.+++++.+.. +.+..++..++.++...|++++|.++++++++.+.. +..++..+...+.+.|..
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCH
Confidence 999999999 88999999999853 336778889999999999999999999999987644 888999999999999999
Q ss_pred hhhhhccc
Q 004791 710 ERKQQCDG 717 (730)
Q Consensus 710 e~~~~~~~ 717 (730)
+++.++-.
T Consensus 888 ~~A~~~~~ 895 (899)
T TIGR02917 888 AEARKELD 895 (899)
T ss_pred HHHHHHHH
Confidence 88776543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=338.06 Aligned_cols=602 Identities=15% Similarity=0.074 Sum_probs=317.5
Q ss_pred ccCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccCh--------------hhHHHHH
Q 004791 84 SLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLD--------------KEILFVL 149 (730)
Q Consensus 84 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~ 149 (730)
...++.+.|+..|..+.... +.+..++..++.++...|++++|...+..++...+.. ++...+.
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 281 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALR--PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHH
Confidence 35567777777777665432 3456667777777777777777777776666543322 2223333
Q ss_pred HHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004791 150 DFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKI 229 (730)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 229 (730)
..+.+..... +.+...+..+...+...|++++|...|+++++.. +.+...+..+...+.+.|++++|...+.++
T Consensus 282 ~~~~~~l~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 355 (899)
T TIGR02917 282 ETLQDALKSA-----PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPA 355 (899)
T ss_pred HHHHHHHHhC-----CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333332211 1112233334445556666666666666665542 223445555556666666666666666666
Q ss_pred HHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh
Q 004791 230 VQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVR 309 (730)
Q Consensus 230 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 309 (730)
.... +.+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.+ +....
T Consensus 356 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 432 (899)
T TIGR02917 356 LGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGR 432 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-Ccchh
Confidence 5543 2345555666666666666666666666655432 2344455555556666666666666666555443 11223
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 310 TYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYC 389 (730)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 389 (730)
....++..+.+.|++++|+++++.+.... +.+..++..+...+...|++++|...|+++.+... .+...+..++..+.
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 510 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDI 510 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHH
Confidence 33444555555555555555555555432 22445555555555555555555555555554322 13444455555555
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHH
Q 004791 390 KEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYK 469 (730)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 469 (730)
..|++++|.+.++++...+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+...|++++|.+
T Consensus 511 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 5555555555555555443 3344455555555555555555555555554432 2234444555555555555555555
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004791 470 VLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC 549 (730)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 549 (730)
+++.+.+.. +.+...|..+..++...|++++|...++.+.+..+. +...+..+..++.+.|++++|...++++.+..
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 555555432 234445555555555555555555555555544322 34445555555555555555555555555443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004791 550 LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAF 629 (730)
Q Consensus 550 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 629 (730)
+.+..++..++..+...|++++|..+++.+.+.+ +.+...+..++..+...|++++|.+.|+++...+ |+..++..+
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l 742 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKL 742 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHH
Confidence 3344555555555555555555555555555443 3344455555555555555555555555555432 222444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCh
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKV 708 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~ 708 (730)
+.++.+.|++++|.+.++++.+.. +.+...+..++..|...|++++|...|+++.+.. +++...+..+...+...|+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 555555555555555555555432 2344555555555555555555555555555432 2334444444444444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-27 Score=274.39 Aligned_cols=604 Identities=12% Similarity=0.041 Sum_probs=421.3
Q ss_pred cCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCcccc
Q 004791 85 LDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSL 164 (730)
Q Consensus 85 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (730)
..++++.|.+.+..+.... +.++..+..++.++.+.|+.++|.+.+..+....+....+..+...+.. .
T Consensus 40 ~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~---------~ 108 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL---------S 108 (1157)
T ss_pred hhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh---------c
Confidence 6678888988888776543 4578889999999999999999999999999887766655443333321 1
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIY-TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTS 243 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 243 (730)
.++......+.+.+.+.|++++|+..|+++++... |+.. ............|+.++|+..++++.+..+ .+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 34444556667778888999999999998887532 2322 111111222345888999999999888743 35667778
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCCC----------------C--cC-hhhH----------------------------
Q 004791 244 LILGYCRNKDVEKGFRVFMMMPKKGC----------------R--RN-EVSY---------------------------- 276 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~~~----------------~--~~-~~~~---------------------------- 276 (730)
+...+...|+.++|+..++++..... . ++ ...+
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 88888888999999998888754210 0 00 0000
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhH---
Q 004791 277 ------TNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPN-VHTY--- 346 (730)
Q Consensus 277 ------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~--- 346 (730)
......+...|++++|+..|++..+.+ +.+..++..+...+.+.|++++|+..|++..+...... ...+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 012344566788888888888887764 34677788888888888888888888888877643321 1111
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHH
Q 004791 347 ---------TVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYN 417 (730)
Q Consensus 347 ---------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 417 (730)
......+.+.|++++|+..|+++++... .+...+..+...+...|++++|++.|+++.+.. +.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 1224456678888888888888887643 255667778888888888888888888887653 33455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC--------CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHH
Q 004791 418 ELICGFCKRKNVHRAMSLLNELLEQNLS--------PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVF 489 (730)
Q Consensus 418 ~li~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 489 (730)
.+...+. .++.++|..+++.+...... .....+..+...+...|++++|++.+++..+.... +...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 6666654 45678887777654332100 01223455667778889999999999988876432 56677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---------HHHHHH
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSY---------TYNALI 560 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~li 560 (730)
...|.+.|++++|...++++.+..+. +...+..+...+...|+.++|+..++.+......++.. .+..+.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 88888999999999999988876543 45555555566777888889988888765432222221 123455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
..+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.|+++++..+. +...+..++..|...|+++
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHH
Confidence 667788999999988872 2456677788889999999999999999999987533 6788889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHcCChhhhhhh
Q 004791 641 EAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCE-P----SHHTYAFLIKHLSNKKVDERKQQ 714 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~~~~~l~~~l~~~~~~e~~~~ 714 (730)
+|++.++++.+.. +.+...+..+..++...|++++|.+++++++..... | +...+..+...+...|..+++.+
T Consensus 655 eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 655 AARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred HHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999888743 235667778888899999999999999998864221 1 12345555566666666655543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-25 Score=261.22 Aligned_cols=586 Identities=13% Similarity=0.049 Sum_probs=425.9
Q ss_pred ccCCChhhHHHHHHhhhcCCCCCCCHHH----------------HHHHHHHHHhcCChhhHHHHHHHHHHcccChhh---
Q 004791 84 SLDLNPQTALDFSYWISQKPGFKHSVES----------------YSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKE--- 144 (730)
Q Consensus 84 ~~~~~~~~al~~f~~~~~~~~~~~~~~~----------------~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~--- 144 (730)
...++.+.|...++.+.+.. +.+... .....+.+.+.|++++|...+..++...+....
T Consensus 73 l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~ 150 (1157)
T PRK11447 73 LRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAV 150 (1157)
T ss_pred HhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHH
Confidence 37789999999997776543 223222 234455788999999999999988865433221
Q ss_pred ------------HHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHH-----
Q 004791 145 ------------ILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPN--IYT----- 205 (730)
Q Consensus 145 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~----- 205 (730)
...+...+.++... .+.++..+..+...+.+.|+.++|+..++++.+...... ...
T Consensus 151 ~y~~~~~~~~g~~~~A~~~L~~ll~~-----~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l 225 (1157)
T PRK11447 151 EYWRLVAKLPAQRPEAINQLQRLNAD-----YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI 225 (1157)
T ss_pred HHHHHHhhCCccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 12233333333322 245667788888889899999999999998876421100 001
Q ss_pred ------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcCh
Q 004791 206 ------------FNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNE 273 (730)
Q Consensus 206 ------------~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 273 (730)
+...+..+-.......|...+.++......|+.. .......+...|++++|+..|++..+.. +.+.
T Consensus 226 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~ 303 (1157)
T PRK11447 226 KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDS 303 (1157)
T ss_pred hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 1111111112222445555555554432233322 1234567788999999999999998754 4578
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-ChhhH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 274 VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRP-TVRTY------------TVVIFGLCRVGRKSEALEFFNEMSARGCE 340 (730)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 340 (730)
.++..+...+.+.|++++|+..|++..+.+... ....| ......+.+.|++++|++.|+++++..+.
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~ 383 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT 383 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999998764221 11112 12345677899999999999999987544
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--------CCC
Q 004791 341 PNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNC--------SPN 412 (730)
Q Consensus 341 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------~~~ 412 (730)
+...+..+...+...|++++|++.|+++++.... +...+..+...|. .++.++|..+++.+..... ...
T Consensus 384 -~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 384 -DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 6778888999999999999999999999986432 5566777777774 4678999999877643210 001
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004791 413 ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDT 492 (730)
Q Consensus 413 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 492 (730)
...+..+...+...|++++|++.++++++.. +.+...+..+...+.+.|++++|...++++.+... .+...+..+...
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~ 538 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLY 538 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 2245567778889999999999999999864 23566778899999999999999999999887543 244455555556
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCH---------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 493 LCKRGRVEEAQVLFDSLEKKGIKAGE---------VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 563 (730)
+...++.++|...++.+......++. ..+..+...+...|+.++|+.+++. .+.+...+..+...+
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWA 613 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHH
Confidence 77889999999999886543222221 1233456778899999999999872 256677788899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 564 YRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 564 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 643 (730)
.+.|++++|+..|+++++.. +.+...+..++..+...|++++|++.++++.+... .+...+..+..++...|++++|.
T Consensus 614 ~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999875 56788999999999999999999999999887532 25667788889999999999999
Q ss_pred HHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCC
Q 004791 644 DLIVKMNREGI--VP---DSVTYTLLICAYAHLGLIYSAFDVLKRMF-DAGCE 690 (730)
Q Consensus 644 ~~~~~m~~~g~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~ 690 (730)
++++++....- .| +...+..+...+...|+.++|+..|++.+ ..|+.
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 99999987531 11 23566777889999999999999999996 34454
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-21 Score=216.35 Aligned_cols=553 Identities=12% Similarity=0.043 Sum_probs=344.1
Q ss_pred cCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCcccc
Q 004791 85 LDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSL 164 (730)
Q Consensus 85 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (730)
..++++.|+..|+.+.... +.+..++..+...+.+.|+.++|+...+..++..+.+.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~--------------------- 112 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDA--------------------- 112 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH---------------------
Confidence 5689999999999998654 45688999999999999999999999888876543222
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHCCCCC
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMING--------CCKVGNVGEAELYVSKIVQAGLSP 236 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~g~~~ 236 (730)
..+..+ ..+ +++++|..+|+++++..+. +..++..+... |.+. ++|...++ .......|
T Consensus 113 ----~~~~~L-a~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~ 179 (987)
T PRK09782 113 ----RLERSL-AAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASP 179 (987)
T ss_pred ----HHHHHH-HHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCC
Confidence 222222 111 4555555555555543211 12222222222 3333 22222222 21111222
Q ss_pred CHHhHHHH-HHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 004791 237 DTFTYTSL-ILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCE-AKRVDEALDLFRRMGEDDCRPTVRTYTVV 314 (730)
Q Consensus 237 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 314 (730)
+..+.... ...|.+.|++++|++++.++.+.+ +.+......|...|.. .++ +++..+++.. .+.+...+..+
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~al 253 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITY 253 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHH
Confidence 23322222 455555555555555555555543 1233334444444444 244 4444443321 11244455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-CChhh------------------------------HHHHHHHHHhcCCHHHHH
Q 004791 315 IFGLCRVGRKSEALEFFNEMSARGCE-PNVHT------------------------------YTVLIDCLCKENKVDEAS 363 (730)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~------------------------------~~~li~~~~~~g~~~~A~ 363 (730)
+..|.+.|+.++|.++++++...-.. |...+ ...++..+.+.++++.+.
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 55555555555555555544322110 11111 111233444444444333
Q ss_pred H-----------------------------HHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-C-CCCC
Q 004791 364 E-----------------------------LLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSN-N-CSPN 412 (730)
Q Consensus 364 ~-----------------------------~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~ 412 (730)
+ .+..|.+.. +-+....-.+.-...+.|+.++|.++|+..... + -..+
T Consensus 334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 3 333333321 113333334444567788999999999888763 1 1223
Q ss_pred hhcHHHHHHHHHhcCC---HHHHHHH-------------------------HHHHHHCCCCC--ChhhHHHHHHHHHhCC
Q 004791 413 ARTYNELICGFCKRKN---VHRAMSL-------------------------LNELLEQNLSP--TLITYNSLIYGQCREG 462 (730)
Q Consensus 413 ~~~~~~li~~~~~~~~---~~~A~~~-------------------------~~~~~~~~~~~--~~~~~~~li~~~~~~g 462 (730)
.....-++..|.+.+. ..++..+ +...... .++ +...|..+...+.. +
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~ 490 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-T 490 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-C
Confidence 3344467777777665 3333333 1111111 133 56677777777776 7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004791 463 HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLE 542 (730)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 542 (730)
+.++|+..+.+.... .|+......+...+...|++++|...++++.... |+...+..+..++.+.|+.++|...++
T Consensus 491 ~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 491 LPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888899988887765 3555444444555578999999999999986652 344456677888899999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004791 543 RMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD 622 (730)
Q Consensus 543 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 622 (730)
+.++.+ +.+...+..+.....+.|++++|...+++.++.. |+...+..+..++.+.|++++|+..+++.++..+. +
T Consensus 567 qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~ 642 (987)
T PRK09782 567 QAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-N 642 (987)
T ss_pred HHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 998875 3344444444445556699999999999999864 67888999999999999999999999999987543 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004791 623 VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSH 693 (730)
Q Consensus 623 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 693 (730)
...++.+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|+..+++.++. .|+.
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 7788899999999999999999999999853 336888999999999999999999999999874 5655
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-21 Score=202.89 Aligned_cols=575 Identities=12% Similarity=0.058 Sum_probs=426.7
Q ss_pred ChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccC
Q 004791 88 NPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLS 167 (730)
Q Consensus 88 ~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (730)
+.+.|..-|+.+.++. +++.....--..+....+++..|..++..++..++. +++|
T Consensus 145 ~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~----------------------~~aD 200 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPA----------------------CKAD 200 (1018)
T ss_pred cHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc----------------------cCCC
Confidence 3567788888887654 445554444444555566777777776665543321 2344
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHhHHHH
Q 004791 168 VKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKV---GNVGEAELYVSKIVQAGLSPDTFTYTSL 244 (730)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~l 244 (730)
+.. .+..++++.|+.+.|+..|.++++..+ .++.++..|.-.-... ..+..|..++.+.-... ..++++.+.|
T Consensus 201 ~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~L 276 (1018)
T KOG2002|consen 201 VRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHL 276 (1018)
T ss_pred ccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHH
Confidence 322 233667899999999999999998643 2333333333322222 34667777777776654 3578899999
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCC--cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 004791 245 ILGYCRNKDVEKGFRVFMMMPKKGCR--RNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG 322 (730)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 322 (730)
...|.-.|++..+..+...+...... .-...|-.+..+|...|++++|...|.+..+.+..--+..+..+...+.+.|
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc
Confidence 99999999999999999988874321 1234578899999999999999999999887642222456667889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 004791 323 RKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKEN----KVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAAL 398 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 398 (730)
+++.+...|+.+.+..+. +..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+-...-+.. +
T Consensus 357 dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L 433 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-L 433 (1018)
T ss_pred hHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-H
Confidence 999999999999987544 6778888888888775 5678888888887764 3378888888887766554444 6
Q ss_pred HHHHHHH----hCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCh------hhHHHHHHHHHhCCChh
Q 004791 399 QILDLMK----SNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQ---NLSPTL------ITYNSLIYGQCREGHLD 465 (730)
Q Consensus 399 ~~~~~m~----~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~ 465 (730)
.+|.... ..+..+.....|.+...+...|++.+|...|.+.... ...++. .+-..+.......++.+
T Consensus 434 ~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 434 DAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 6665443 4555677888999999999999999999999988765 122232 23445677777888999
Q ss_pred HHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004791 466 SAYKVLHLINESGLVPD-QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERM 544 (730)
Q Consensus 466 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 544 (730)
.|.+.|..+.+.. |. ...|..+.-+....+...+|...+..+...+- .++..+..+...+.+...+..|.+-|+.+
T Consensus 514 ~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 514 VAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred HHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 9999999998863 33 33444444333345788899999999887643 37788888888999999999999877777
Q ss_pred HhCCC-CCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004791 545 LSDDC-LPNSYTYNALIDGLYR------------ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLL 611 (730)
Q Consensus 545 ~~~~~-~p~~~~~~~li~~~~~------------~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 611 (730)
.+.-. .+|..+..+|...|.+ .+..++|+++|.++++.. +.|...-|.++..++..|++.+|..+|
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHH
Confidence 66422 3677777777775542 235678999999999876 678888899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004791 612 DQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCE 690 (730)
Q Consensus 612 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 690 (730)
.+..+... .+..+|..+.++|..+|++..|+++|+...+.- -.-+..+...|..++...|++.+|.+.+...+...+.
T Consensus 670 sqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 670 SQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 99998643 255689999999999999999999999987653 3347889999999999999999999999998875444
Q ss_pred CCHHHHHH
Q 004791 691 PSHHTYAF 698 (730)
Q Consensus 691 p~~~~~~~ 698 (730)
...+.|+.
T Consensus 749 ~~~v~FN~ 756 (1018)
T KOG2002|consen 749 NTSVKFNL 756 (1018)
T ss_pred cchHHhHH
Confidence 44455653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=205.74 Aligned_cols=447 Identities=17% Similarity=0.151 Sum_probs=353.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhc
Q 004791 207 NTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEA 286 (730)
Q Consensus 207 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 286 (730)
..+..-..+.|++++|++....+-+.+. .+....-.+-.++.+..+++....--....+ ..+.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHHHHh
Confidence 4455666677888888887766655432 1222222333556666666665443333333 2234567899999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHH
Q 004791 287 KRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNV-HTYTVLIDCLCKENKVDEASEL 365 (730)
Q Consensus 287 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 365 (730)
|++++|+.+|+.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++.+ |+. -..+.+...+-..|++++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999875 3467899999999999999999999999988764 443 3344455566668999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 366 LNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLS 445 (730)
Q Consensus 366 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 445 (730)
|.+.++.... =.+.|..|...+-..|+.-.|++.|++..+.+ +.-...|-.|...|...+.+++|+..+.+.+... +
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 9998886322 36788999999999999999999999998763 2235788899999999999999999999888753 2
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 004791 446 PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALI 525 (730)
Q Consensus 446 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 525 (730)
.....+..+...|..+|.++-|+..+++.++.... =...|+.+..++...|++.+|...+.+.+...+. .....+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHH
Confidence 35567777888899999999999999999886422 3578999999999999999999999999987554 667889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCH
Q 004791 526 DGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT-VYTYTILIEEVLKEGDF 604 (730)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~ 604 (730)
..|...|++++|..+|...++-. +.-....+.|...|-+.|++++|+..|++.++. .|+ ...|+.+...|-..|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999998864 334567899999999999999999999999974 455 57899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 004791 605 DHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-SVTYTLLICAYA 669 (730)
Q Consensus 605 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~ 669 (730)
+.|.+.+.+++..++. =....+.|...|...|+..+|+.-+++..+ ++|| +..|..++.++.
T Consensus 439 ~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 9999999999985422 356788999999999999999999999998 6787 566666666543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-22 Score=197.42 Aligned_cols=445 Identities=16% Similarity=0.125 Sum_probs=363.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR 320 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 320 (730)
...|..-..+.|++.+|.+.-..+-..+ +.+....-.+-.++.+..+++.....-....+.+ +--..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4456666778999999999877665533 2233334445566777778877666555444443 3356799999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhCCCHHHHHH
Q 004791 321 VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVT-YNALIDGYCKEGLMEAALQ 399 (730)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~ 399 (730)
.|++++|+..++.+++..++ .+..|..+..++...|+.+.|...|.+.++. .|+... ...+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999998655 7889999999999999999999999999885 344333 3345556667899999999
Q ss_pred HHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 004791 400 ILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPT-LITYNSLIYGQCREGHLDSAYKVLHLINESG 478 (730)
Q Consensus 400 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 478 (730)
.|.+..+.. +-=...|+.|...+-..|+...|+..|++..... |+ ...|..|...|...+.+++|+..+.+.....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 998888763 3346789999999999999999999999998853 43 4578899999999999999999999887653
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004791 479 LVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNA 558 (730)
Q Consensus 479 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 558 (730)
+-....+..+...|..+|.++-|+..+++.++..+. =...|+.|..++-..|++.+|.+.+.+.+... +.-..+.+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 224567777888899999999999999999988654 45789999999999999999999999999864 455678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD-VYTYTAFIQAYCSIG 637 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 637 (730)
|...|...|.+++|..+|....+.. +.-....+.|...|-++|++++|+..+++.+. ++|+ ...|+.+...|...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 9999999999999999999999854 33467789999999999999999999999997 4564 558999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 004791 638 KLDEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH-TYAFLIKHL 703 (730)
Q Consensus 638 ~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~l 703 (730)
+.++|+..+.+.+. +.|. ...++.|...|..+|++.+|+.-|++.++ ++||.. .|..++.++
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 99999999999998 5575 77899999999999999999999999987 577753 344444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-19 Score=202.34 Aligned_cols=581 Identities=12% Similarity=0.016 Sum_probs=412.6
Q ss_pred hhhhccCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHH-------
Q 004791 80 SSLFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFL------- 152 (730)
Q Consensus 80 ~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------- 152 (730)
.+.+...++++.|+..+..+.... +.+...+..+..+ ++.++|..+++.++...+.+.++...+...
T Consensus 85 A~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 85 AEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchh
Confidence 345557889999999998887653 3455555544333 888999999999998887766654333322
Q ss_pred --------HHHhhcCCccccccCHHhHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHH
Q 004791 153 --------RRVNESGSEFSLKLSVKGYN-TLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCK-VGNVGEA 222 (730)
Q Consensus 153 --------~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A 222 (730)
...-. .......|+..+.. .+.+.|.+.|++++|+..+.++.+.++. +......+..+|.. .++ +++
T Consensus 159 ~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a 235 (987)
T PRK09782 159 RLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRL 235 (987)
T ss_pred hhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHH
Confidence 00001 11111233344444 4489999999999999999999998643 45556777778887 477 888
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCC-cChhhHH------------------------
Q 004791 223 ELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCR-RNEVSYT------------------------ 277 (730)
Q Consensus 223 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~------------------------ 277 (730)
..++... .+.++..+..++..|.+.|+.++|.++++++...... |+..+|.
T Consensus 236 ~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 236 LALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred HHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 8886542 3368888999999999999999999999988653211 2222222
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 278 ------NLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLID 351 (730)
Q Consensus 278 ------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 351 (730)
.++..+.+.++++.+.++.. +.|.....-.-..+....+...++.+.+..|.+.... +....--+.-
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~ 384 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTW 384 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 22445556666665554421 2233222211111222346777788888888776332 5555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-C-CCCChhhHHHHHHHHHhCCC---HHHHHHH----------------------HHHH
Q 004791 352 CLCKENKVDEASELLNRMLEK-G-LFPNVVTYNALIDGYCKEGL---MEAALQI----------------------LDLM 404 (730)
Q Consensus 352 ~~~~~g~~~~A~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m 404 (730)
...+.|+.++|..+|+..... + -..+....+-++..|.+.+. ..++..+ ++..
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 678899999999999998773 1 22244455577788877765 3333222 1111
Q ss_pred HhC-CC-CC--ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 004791 405 KSN-NC-SP--NARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLV 480 (730)
Q Consensus 405 ~~~-~~-~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 480 (730)
... +. ++ +...|..+...+.. ++.++|+..+.+..... |+......+...+...|++++|...++++... .
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 111 11 33 56777888877776 88999999888887753 55444444555567899999999999998664 3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004791 481 PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALI 560 (730)
Q Consensus 481 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 560 (730)
|+...+..+...+.+.|+.++|...++...+.++. ....+..+.....+.|++++|...+++.++.. |+...+..+.
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA 616 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARA 616 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 44455667778889999999999999999987543 33344444445556799999999999999875 6788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
..+.+.|++++|+..+++.++.. +.+...++.+...+...|++++|++.+++.++..+. +...+..+..++...|+++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999876 567888899999999999999999999999987543 7888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 641 EAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
+|+..+++..+. .|+ ..+.........+..+++.|.+-+++... +.|+..
T Consensus 695 eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~ 745 (987)
T PRK09782 695 ATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSS 745 (987)
T ss_pred HHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccch
Confidence 999999999984 565 46666778888888889999998888765 355555
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-20 Score=192.93 Aligned_cols=536 Identities=13% Similarity=0.065 Sum_probs=396.0
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNM--VVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYT 242 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 242 (730)
++|+-.+---.......+++..|+.+|+.++... ..||+. ..+..++.+.|+.+.|+..|.++.+..+ -++.++-
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv 237 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALV 237 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHH
Confidence 4444433333334446689999999999987653 344543 2344667799999999999999998643 2333333
Q ss_pred HHHHHHHhc---CChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHH
Q 004791 243 SLILGYCRN---KDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCR--PTVRTYTVVIFG 317 (730)
Q Consensus 243 ~li~~~~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~ 317 (730)
.|...-... ..+..+..++...-..+ +.|+++.+.|.+.|.-.|+++.+..+...+...... .-...|-.+.++
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs 316 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS 316 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 332222222 23456666666555432 368889999999999999999999999998775311 123458889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC----C
Q 004791 318 LCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEG----L 393 (730)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~ 393 (730)
|...|++++|...|.+..+....-.+..+.-+...+.+.|+++.+...|+.+.+.. +-+..+...|...|...+ .
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHH
Confidence 99999999999999988876443225556678999999999999999999999873 336778888888888775 6
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhCCChhHHHH
Q 004791 394 MEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELL----EQNLSPTLITYNSLIYGQCREGHLDSAYK 469 (730)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 469 (730)
.+.|..++.+..+.. +.|...|-.+...+-...- ..++..|..+. ..+-.+-+...|.+...+...|++++|..
T Consensus 396 ~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 677888888777664 5577788887777765444 34477766554 34445677889999999999999999999
Q ss_pred HHHHHHhC---CCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 004791 470 VLHLINES---GLVPDQ------FTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSL 540 (730)
Q Consensus 470 ~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 540 (730)
.|...... ...+|. .+--.+...+-..++.+.|.+.|..+.+..+. =+..|..++..--..+...+|..+
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHH
Confidence 99987765 122333 22334555666778999999999999987432 233444444333345788899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH------------HcCCHHHH
Q 004791 541 LERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG-VKPTVYTYTILIEEVL------------KEGDFDHA 607 (730)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~------------~~g~~~~A 607 (730)
++..+..+ ..++..+..+...+.+...+..|.+-|+...+.- ..+|.++.-.|++.|. ..+..++|
T Consensus 553 lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 553 LKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 99998865 5566777777778888888888888777666522 2367777777777664 23568899
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 004791 608 HRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD- 686 (730)
Q Consensus 608 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~- 686 (730)
+++|.+.+...+. |...-|.++-+++..|++.+|..+|.+..+.. ..+..+|..++++|...|++..|+++|+....
T Consensus 632 lq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987644 88888899999999999999999999999865 34677899999999999999999999999874
Q ss_pred cCCCCCHHHHHHHHHHHHcCChhhh
Q 004791 687 AGCEPSHHTYAFLIKHLSNKKVDER 711 (730)
Q Consensus 687 ~g~~p~~~~~~~l~~~l~~~~~~e~ 711 (730)
.+-.-+......|-+++...|...+
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHH
Confidence 4445577778888898888876443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-19 Score=199.60 Aligned_cols=433 Identities=14% Similarity=0.015 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHH
Q 004791 205 TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLC 284 (730)
Q Consensus 205 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 284 (730)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+.. +.+..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4555666677777777777777777664 3555666666666777777777777776666533 234556666666677
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004791 285 EAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASE 364 (730)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 364 (730)
..|++++|+..|......+.. +......++..+.. ..+........+... ++...+..+.. +......+.+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchh
Confidence 777777776666555433211 11111111111111 122222222222211 12222222222 111111111111
Q ss_pred HHHHHHHCCCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 365 LLNRMLEKGLFPN-VVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQN 443 (730)
Q Consensus 365 ~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 443 (730)
-+.+..+. .+. ...+..+...+.. ....+.+++|.+.|++.++.+
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e--------------------------------~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPE--------------------------------SKADESYEEAARAFEKALDLG 324 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHH--------------------------------hhhhhhHHHHHHHHHHHHhcC
Confidence 11111110 000 0011111100000 011234444444444444432
Q ss_pred --CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHH
Q 004791 444 --LSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIY 521 (730)
Q Consensus 444 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 521 (730)
.+.....++.+...+...|++++|+..+++..+... -....|..+...+...|++++|...|+++.+..+. +..+|
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~ 402 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIY 402 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 111223344444444445555555555555444321 12334444444455555555555555555444322 34445
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004791 522 TALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE 601 (730)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 601 (730)
..+...+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++.++.. +.+...++.+...+...
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 555555555555555555555555443 2334444445555555555555555555554432 23344555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 602 GDFDHAHRLLDQMVSLGLKPDVY------TYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIY 675 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 675 (730)
|++++|++.|++.++.....+.. .++..+..+...|++++|.+++++..+.. +.+...+..++..+...|+++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHH
Confidence 55555555555555432111000 01111112222455555555555555432 112334555555555555555
Q ss_pred HHHHHHHHHHH
Q 004791 676 SAFDVLKRMFD 686 (730)
Q Consensus 676 ~A~~~~~~m~~ 686 (730)
+|+++|++..+
T Consensus 560 eAi~~~e~A~~ 570 (615)
T TIGR00990 560 EALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-19 Score=192.67 Aligned_cols=432 Identities=13% Similarity=0.026 Sum_probs=243.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004791 169 KGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGY 248 (730)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 248 (730)
..+......|.+.|++++|+..|+++++. .|+...|..+..+|.+.|++++|+..+.+.++... .+...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 34667788899999999999999999975 57788899999999999999999999999998742 3567888999999
Q ss_pred HhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004791 249 CRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEAL 328 (730)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (730)
...|++++|+.-|..+...+...+. ....++.-+.. ..+........+.. +++...+..+...+ ...+...+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcch
Confidence 9999999999988776553321222 12222222222 22333333333332 23333444333322 222222222
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-C-CCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 004791 329 EFFNEMSARGCEPNVHTYTVLIDCL---CKENKVDEASELLNRMLEKG-L-FPNVVTYNALIDGYCKEGLMEAALQILDL 403 (730)
Q Consensus 329 ~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 403 (730)
.-+.+....... ....+..+...+ ...+++++|.+.|++.++.+ . +.+...|+.+...+...|++++|+..+++
T Consensus 278 ~~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 278 AGLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222221111111 011111111111 22356778888887777654 1 12345566666667777777777777777
Q ss_pred HHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 004791 404 MKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQ 483 (730)
Q Consensus 404 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 483 (730)
..+.. +.+...|..+...+...|++++|...|+++++.. +.+...|..+...+...|++++|...|++..+
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~------- 427 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID------- 427 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Confidence 66552 2234455566666666666666666666665542 22344455555555555555555555555544
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 484 FTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 563 (730)
..+. +...+..+..++.+.|++++|+..+++.+... +.+...++.+...+
T Consensus 428 ----------------------------l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 428 ----------------------------LDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELL 477 (615)
T ss_pred ----------------------------cCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3222 33344444445555555555555555554432 23344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 564 YRERKVQEALLLVEKMTKMGVKPTV------YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 564 ~~~~~~~~A~~~~~~m~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
...|++++|++.|++.++.....+. ..++..+..+...|++++|.+++++.++.++. +...+..++.++...|
T Consensus 478 ~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 478 LDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQG 556 (615)
T ss_pred HHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcc
Confidence 5555555555555555543211000 01111122223356777777777776665422 3445667777777777
Q ss_pred CHHHHHHHHHHHHH
Q 004791 638 KLDEAEDLIVKMNR 651 (730)
Q Consensus 638 ~~~~A~~~~~~m~~ 651 (730)
++++|+++|++..+
T Consensus 557 ~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 557 DVDEALKLFERAAE 570 (615)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-20 Score=196.29 Aligned_cols=299 Identities=17% Similarity=0.126 Sum_probs=194.4
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhCCChh
Q 004791 389 CKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPT---LITYNSLIYGQCREGHLD 465 (730)
Q Consensus 389 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 465 (730)
...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444444444444444432 22333444444444455555555555544444321111 123455555666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCChhHHHHHH
Q 004791 466 SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG----EVIYTALIDGYCKEGKIDDAHSLL 541 (730)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 541 (730)
+|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665532 23445566666666666666666666666665543321 123455667777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004791 542 ERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP 621 (730)
Q Consensus 542 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 621 (730)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|.+.++++.+.. |
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 8887754 345567777788888888888888888888865422224567788888888899999999888888753 5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 622 DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH---LGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.++++|.++++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5556678888888899999999999888874 5888888877777664 558888999999888877777665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-20 Score=193.10 Aligned_cols=302 Identities=16% Similarity=0.157 Sum_probs=141.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhCCCHH
Q 004791 319 CRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN---VVTYNALIDGYCKEGLME 395 (730)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~ 395 (730)
...|++++|+..|.++.+.++. +..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3444555555555555544322 334444455555555555555555555444321110 123444455555555555
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 004791 396 AALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLIN 475 (730)
Q Consensus 396 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 475 (730)
+|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++++.+.+..+....
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------- 178 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------- 178 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence 5555555554431 22344444444455555555555555544444321110000
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004791 476 ESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYT 555 (730)
Q Consensus 476 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 555 (730)
....+..+...+.+.|++++|...++++.+..+. +...+..+...+.+.|++++|.++++++...+......+
T Consensus 179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 179 ------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 0011222333344444444444444444443221 233444455555555555555555555554331111234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS 635 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 635 (730)
++.++.+|.+.|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++++. .|+...+..++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhh
Confidence 4555555555566666666655555532 34444455555566666666666666655553 3455555555544443
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCH
Q 004791 636 ---IGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 636 ---~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
.|+.+++..++++|.+.++.|++
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCC
Confidence 33556666666666655444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-18 Score=189.71 Aligned_cols=328 Identities=12% Similarity=0.068 Sum_probs=143.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 004791 279 LIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENK 358 (730)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 358 (730)
++..+.+.|++++|..+++...... +-+...+..++.+....|++++|++.|+++....+. +...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCC
Confidence 3444455555555555555555443 222333334444444555555555555555554332 34445555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 359 VDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNE 438 (730)
Q Consensus 359 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 438 (730)
+++|...++++.+... .+...+..++..+...|++++|...++.+.... +.+...+..+ ..+...|++++|...+++
T Consensus 126 ~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 5555555555554321 134444555555555555555555555444332 1112222222 224445555555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCC
Q 004791 439 LLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEE----AQVLFDSLEKKGI 514 (730)
Q Consensus 439 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~ 514 (730)
+++....++...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++ |...++++.+..+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 4443222222222333344444444555554444444432 1133334444444444444442 3444444444332
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHH
Q 004791 515 KAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTV-YTYTI 593 (730)
Q Consensus 515 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ 593 (730)
. +...+..+...+.+.|++++|+..+++.+... +.+...+..+...+.+.|++++|+..++++.+.. |+. ..+..
T Consensus 282 ~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~ 357 (656)
T PRK15174 282 D-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRY 357 (656)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHH
Confidence 2 33444444444444444444444444444432 2223333444444444444444444444444322 221 12222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
+..++...|+.++|...|+++.+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 23334444444444444444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-18 Score=191.04 Aligned_cols=429 Identities=12% Similarity=0.069 Sum_probs=260.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 004791 237 DTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIF 316 (730)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 316 (730)
+..-..-.+......|+.++|++++.+..... +.+...+..+...+...|++++|.++|++..+.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44444555666667777777777777766411 2445557777777777777777777777776653 334556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH
Q 004791 317 GLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA 396 (730)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 396 (730)
.+...|++++|+..++++.+..+. +.. +..+...+...|+.++|...++++.+..+. +...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 777777777777777777766333 444 666777777777777777777777775433 45555566666677777777
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCh---hHHHHHHHH
Q 004791 397 ALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHL---DSAYKVLHL 473 (730)
Q Consensus 397 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~ 473 (730)
|++.++.... .|+.. .-+ ....+.....- .+.......+++ ++|++.++.
T Consensus 169 Al~~l~~~~~---~p~~~---~~l-------~~~~~~~~~r~--------------~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 169 ALGAIDDANL---TPAEK---RDL-------EADAAAELVRL--------------SFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHHhCCC---CHHHH---HHH-------HHHHHHHHHHh--------------hcccccChhHHHHHHHHHHHHHHH
Confidence 7777765543 22200 000 00000000000 000000111122 556666666
Q ss_pred HHhC-CCCCCHH-hH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004791 474 INES-GLVPDQF-TY----SVFIDTLCKRGRVEEAQVLFDSLEKKGIK-AGEVIYTALIDGYCKEGKIDDAHSLLERMLS 546 (730)
Q Consensus 474 ~~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 546 (730)
+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++..
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 5542 1112211 11 11122344557777777777777765432 221 222245667777777777777777665
Q ss_pred CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHH
Q 004791 547 DDCLP---NSYTYNALIDGLYRERKVQEALLLVEKMTKMGV-----------KPT---VYTYTILIEEVLKEGDFDHAHR 609 (730)
Q Consensus 547 ~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~ 609 (730)
..... .......+..++...|++++|..+++++.+... .|+ ...+..+...+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 43110 123445555566777777777777777765420 122 2345566777888889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 610 LLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 688 (730)
.++++....+. +...+..++..+...|++++|++.+++..+. .|+ ...+..++..+...|++++|..+++++++.
T Consensus 381 ~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~- 456 (765)
T PRK10049 381 RARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR- 456 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 99888876433 6778888888888889999999999988884 454 666777777888888999999999888874
Q ss_pred CCCCHHHHHHHHHHH
Q 004791 689 CEPSHHTYAFLIKHL 703 (730)
Q Consensus 689 ~~p~~~~~~~l~~~l 703 (730)
.|+......+=+.+
T Consensus 457 -~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 457 -EPQDPGVQRLARAR 470 (765)
T ss_pred -CCCCHHHHHHHHHH
Confidence 66666554444333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-18 Score=187.84 Aligned_cols=354 Identities=10% Similarity=0.041 Sum_probs=286.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR 320 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 320 (730)
...++..+.+.|++++|..+++...... +.+...+..++.+....|++++|...|+++.+.. +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3456777889999999999999998743 4556677777788889999999999999999875 4567789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 004791 321 VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQI 400 (730)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 400 (730)
.|++++|++.++++.+..+. +...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999999987444 6778889999999999999999999988776433 33344333 347889999999999
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH----HHHHHHHHHh
Q 004791 401 LDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS----AYKVLHLINE 476 (730)
Q Consensus 401 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~ 476 (730)
++.+.+....++...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++ |...++++.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998876433444555666788899999999999999999864 4467788889999999999986 8999999988
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HH
Q 004791 477 SGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS-YT 555 (730)
Q Consensus 477 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~ 555 (730)
... .+...+..+...+...|++++|...++++.+..+. +...+..+..++.+.|++++|+..++++...+ |+. ..
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~ 354 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKW 354 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHH
Confidence 643 36778899999999999999999999999988655 66778889999999999999999999999865 443 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 617 (730)
+..+..++...|+.++|...|++..+.. |+.. ...+++|..-+.+..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~-----------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQAR--ASHL-----------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhc-----------hhhHHHHHHHHHHHHHh
Confidence 4455677889999999999999998753 3321 23445555555555553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-18 Score=189.63 Aligned_cols=415 Identities=12% Similarity=0.059 Sum_probs=272.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHH
Q 004791 202 NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIH 281 (730)
Q Consensus 202 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 281 (730)
+.....-.+......|+.++|+.++.+..... +.+...+..+...+.+.|++++|..++++..+.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44455566777788899999999999998632 3455678999999999999999999999988743 356777889999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 282 GLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 361 (730)
.+...|++++|...++++.+.. +.+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999998874 44566 888999999999999999999999997655 66777778888989999999
Q ss_pred HHHHHHHHHHCCCCCCh------hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCH---HHH
Q 004791 362 ASELLNRMLEKGLFPNV------VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNV---HRA 432 (730)
Q Consensus 362 A~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~---~~A 432 (730)
|++.++.... .|+. .....++......+ ....+++ ++|
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad~A 215 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIADRA 215 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHHHH
Confidence 9999987664 2221 00111111111000 0011111 444
Q ss_pred HHHHHHHHHC-CCCCChh-hH----HHHHHHHHhCCChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHH
Q 004791 433 MSLLNELLEQ-NLSPTLI-TY----NSLIYGQCREGHLDSAYKVLHLINESGLV-PDQFTYSVFIDTLCKRGRVEEAQVL 505 (730)
Q Consensus 433 ~~~~~~~~~~-~~~~~~~-~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 505 (730)
++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHH
Confidence 4445444432 1111111 00 00022233445666666666665554321 221 111234455666666666666
Q ss_pred HHHHHHcCCCc---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCC
Q 004791 506 FDSLEKKGIKA---GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC-----------LPN---SYTYNALIDGLYRERK 568 (730)
Q Consensus 506 ~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~~~ 568 (730)
|+++.+..+.. .......+..++...|++++|..+++++..... .|+ ...+..+...+...|+
T Consensus 295 l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 295 LTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 66655433211 122344445555666666666666666655320 122 2244556667778888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVK 648 (730)
Q Consensus 569 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 648 (730)
.++|+++++++.... +.+...+..++..+...|++++|++.++++++..+. +...+..++..+...|++++|..++++
T Consensus 375 ~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 375 LPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 888888888887754 556777788888888888888888888888875422 455666777778888888888888888
Q ss_pred HHHCCCCCCHH
Q 004791 649 MNREGIVPDSV 659 (730)
Q Consensus 649 m~~~g~~~~~~ 659 (730)
+++. .|+..
T Consensus 453 ll~~--~Pd~~ 461 (765)
T PRK10049 453 VVAR--EPQDP 461 (765)
T ss_pred HHHh--CCCCH
Confidence 8874 46544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-16 Score=173.36 Aligned_cols=457 Identities=14% Similarity=0.093 Sum_probs=298.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCC
Q 004791 209 MINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKR 288 (730)
Q Consensus 209 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 288 (730)
-+-...+.|+++.|+..|.++.+..+.-....+ .++..+...|+.++|+..+++.... .+........++..+...|+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 334556788888999999888876432112334 7778888888888888888888731 11222333333557777888
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 289 VDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNR 368 (730)
Q Consensus 289 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 368 (730)
+++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 888888888888775 335666677778888888888888888888776 34444554444444445666668888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 004791 369 MLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTL 448 (730)
Q Consensus 369 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 448 (730)
+.+..+. +...+..+...+.+.|-...|.++..+- |+..+-...... ..+.|.+..+-. ..+..
T Consensus 195 ll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a----~~~~~ 258 (822)
T PRK14574 195 AVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMA----VLPTR 258 (822)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhc----ccccc
Confidence 8887432 6677777888888888888887766552 333322211110 011111111111 00000
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCC-HHh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 004791 449 ITYNSLIYGQCREGHLDSAYKVLHLINES-GLVPD-QFT----YSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYT 522 (730)
Q Consensus 449 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 522 (730)
. - - .+.--.+.|+.-++.+... +..|. ... ..-.+-++...|++.++++.|+.+...+.+....+..
T Consensus 259 ~-~---~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 259 S-E---T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred c-c---h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 0 0 0 0000224444444544431 11122 111 1223446677888888888888888777655566778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDD-----CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGV------------- 584 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~------------- 584 (730)
.+.++|...+++++|+.+++.+.... .+++......|..++...+++++|..+++++.+...
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 88888888888888888888886643 123444456788888888888888888888876211
Q ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 004791 585 KPTV-YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYT 662 (730)
Q Consensus 585 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~ 662 (730)
.||- ..+..++..+...|++.+|++.++++....+. |......+.+.+...|++.+|.+.++.+... .| +..+..
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~ 488 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILER 488 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHH
Confidence 1121 23344567778889999999999999876533 8888888889999999999999999777764 45 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004791 663 LLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAF 698 (730)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 698 (730)
..+.++...|++++|..+.+.+.+. .|+......
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHH
Confidence 7888888889999998888888764 566554433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-16 Score=170.11 Aligned_cols=453 Identities=14% Similarity=0.067 Sum_probs=310.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004791 173 TLLMQLSKFHLVDEMKRVYLEMLDNMVVPNI--YTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR 250 (730)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 250 (730)
.-+-...+.|+++.|+..|+++++. .|+. ..+ .++..+...|+.++|+.++++..... .........++..|..
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~ 114 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHH
Confidence 3344567899999999999999986 4443 234 88888889999999999999998321 1223333344668888
Q ss_pred cCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 251 NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEF 330 (730)
Q Consensus 251 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (730)
.|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.... |+...+..++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHH
Confidence 999999999999999855 3457778888999999999999999999998874 5666665555555556777779999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 004791 331 FNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCS 410 (730)
Q Consensus 331 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 410 (730)
++++.+..+. +...+..+...+.+.|-...|.++..+- |+..+-...... +.+.|.+..+... .
T Consensus 192 ~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~----~ 255 (822)
T PRK14574 192 SSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAV----L 255 (822)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcc----c
Confidence 9999998654 7888889999999999999999877663 232222111110 1122222222111 1
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCChhhH----HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 004791 411 PNARTYNELICGFCKRKNVHRAMSLLNELLEQ-N-LSPTLITY----NSLIYGQCREGHLDSAYKVLHLINESGLVPDQF 484 (730)
Q Consensus 411 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 484 (730)
++.. -. -+.--.+.|+.-++.++.. + .++....| .-.+-++...|++.++++.|+.+...+.+....
T Consensus 256 ~~~~-~~------~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 256 PTRS-ET------ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred cccc-ch------hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 1100 00 0111234555555555542 1 12111111 123445667778888888888887776554455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----------
Q 004791 485 TYSVFIDTLCKRGRVEEAQVLFDSLEKKGI-----KAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC---------- 549 (730)
Q Consensus 485 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------- 549 (730)
+...+.++|...+++++|+.+++.+..... .++......|.-+|...+++++|..+++++.+...
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 777778888888888888888888765431 22333356777788888888888888888876321
Q ss_pred -C--CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004791 550 -L--PNS-YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYT 625 (730)
Q Consensus 550 -~--p~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 625 (730)
. ||- ..+..++..+...|+..+|.+.++++.... |-|......+...+...|...+|++.++.+....+. +..+
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~ 486 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLIL 486 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHH
Confidence 1 121 223445666778889999999999887765 668888888888889999999999999777665322 5667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 659 (730)
....+.++...|++++|..+.+.+.+. .|+..
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 778888888889999999988888874 46544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-14 Score=142.66 Aligned_cols=591 Identities=12% Similarity=0.056 Sum_probs=425.1
Q ss_pred ChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcC--------
Q 004791 88 NPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESG-------- 159 (730)
Q Consensus 88 ~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 159 (730)
|...|..++..+.... ++.+..|-+-.+.=-..|.+..|+.+...=...|+...++. ++.++ +....
T Consensus 266 DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvW--LeaiR-Lhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVW--LEAIR-LHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHH--HHHHh-cCChHHHHHHHHH
Confidence 4567777777776443 33445555555555567777777766554444444444321 11111 10000
Q ss_pred CccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 004791 160 SEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTF 239 (730)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 239 (730)
..-.++.++..|---+.. ..+...=.++++++++. ++.++..|-. .....+.++|+-++.+.++. ++.+..
T Consensus 341 Avr~~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~d 411 (913)
T KOG0495|consen 341 AVRFLPTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSMD 411 (913)
T ss_pred HHHhCCCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchHH
Confidence 000023344444322221 12333445667777765 2334445543 34556777799999999885 333444
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHh----hCCCCCChhhHHHHH
Q 004791 240 TYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMG----EDDCRPTVRTYTVVI 315 (730)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li 315 (730)
.| .+|.+..-|+.|.++++...+ .++.+...|.+-...--.+|+.+...+++++-. ..|+..+...|..=.
T Consensus 412 Lw----lAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eA 486 (913)
T KOG0495|consen 412 LW----LALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEA 486 (913)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHH
Confidence 44 456666778899999998887 577888899888888888999999998887653 457888888998888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 316 FGLCRVGRKSEALEFFNEMSARGCEP--NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGL 393 (730)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 393 (730)
..|-..|..-.+..+....+..|++. -..||..-.+.|.+.+.++-|+.+|...++- .+-+...|...+..--..|.
T Consensus 487 e~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 487 EACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCc
Confidence 89999999999999999888877753 2468888889999999999999999998875 33367778877777777899
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHH
Q 004791 394 MEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHL 473 (730)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 473 (730)
.++-..+|.+.... ++.....|......+-..|++..|..++.++.+... .+...|..-+.......+++.|..+|.+
T Consensus 566 ~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 566 RESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999999998876 245566777777788888999999999999988643 3677888888888899999999999988
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004791 474 INESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS 553 (730)
Q Consensus 474 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 553 (730)
.... .|+...|..-+...--.+..++|.+++++.++.-+ .-...|..+.+.+-+.++++.|.+.|..-.+. +|..+
T Consensus 644 ar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~i 719 (913)
T KOG0495|consen 644 ARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSI 719 (913)
T ss_pred Hhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCc
Confidence 8764 56777777777777778999999999999988733 24568888899999999999999888876654 45666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 633 (730)
..|..|...--+.|.+-+|..++++..-.+ +.+...|-..|.+-.+.|+.+.|..+..++++.- +.+...|..-|...
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le 797 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLE 797 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhc
Confidence 778888877788889999999999988776 6788889999999999999999999999888863 33666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCChhhhh
Q 004791 634 CSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSH-HTYAFLIKHLSNKKVDERK 712 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~l~~~~~~e~~ 712 (730)
.+.++-..+.+.+++. .-|..+...+...+....+++.|.++|.+.++. .||. .+|.-+.+.....|..+..
T Consensus 798 ~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQ 870 (913)
T ss_pred cCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHH
Confidence 7777655555555543 346666777777777778888888888888765 3443 4555566666666655444
Q ss_pred h
Q 004791 713 Q 713 (730)
Q Consensus 713 ~ 713 (730)
+
T Consensus 871 k 871 (913)
T KOG0495|consen 871 K 871 (913)
T ss_pred H
Confidence 3
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-13 Score=133.61 Aligned_cols=505 Identities=13% Similarity=0.054 Sum_probs=409.1
Q ss_pred cccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 004791 164 LKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTS 243 (730)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 243 (730)
.+.++..|-..+ .....++|+.++.++++. +..+. -|.-+|.+..-++.|..++.+..+. ++-+..+|.+
T Consensus 376 iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWit 445 (913)
T KOG0495|consen 376 IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWIT 445 (913)
T ss_pred CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHH
Confidence 355677776554 346777899999999985 22233 3445666778899999999999875 6668888988
Q ss_pred HHHHHHhcCChhHHHHHHHhc----hhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHHH
Q 004791 244 LILGYCRNKDVEKGFRVFMMM----PKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRP--TVRTYTVVIFG 317 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~ 317 (730)
-...--.+|+.+...++.++- ...|+..+-..|..=...+-..|..--+..+.......|+.. -..||+.-...
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 888788899999888887754 456888888999998999999999999999998888776543 24589999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHH
Q 004791 318 LCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAA 397 (730)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 397 (730)
|.+.+.++-|..+|...++.-+. +...|...+..--..|..++-..+|++....- +-....|.....-+-..|++..|
T Consensus 526 ~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHH
Confidence 99999999999999999886433 67788888877777899999999999999873 33667787788888889999999
Q ss_pred HHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 004791 398 LQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINES 477 (730)
Q Consensus 398 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 477 (730)
..++....+.. +.+...|-.-+.....+..+++|..+|.+.... .|+...|..-+...--.++.++|.+++++.++.
T Consensus 604 r~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999998875 446788889999999999999999999998874 467777877777777789999999999998875
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004791 478 GLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYN 557 (730)
Q Consensus 478 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 557 (730)
++.-...|..+.+.+-+.++++.|...|..-.+.- +-....|-.|...--+.|.+-.|..++++..-.+ |.+...|-
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHH
Confidence 33335678888889999999999999998777653 3366788888888889999999999999998876 67889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
..|.+-.+.|+.+.|..++.++++. ++.+...|..-|....+.++-.+....+++- .-|..+...+...+....
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHH
Confidence 9999999999999999999988875 3566777887887777777755555544443 447777888888888889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004791 638 KLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHT 695 (730)
Q Consensus 638 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 695 (730)
+++.|.+.|++.++.+ +.+..+|..+...+..+|.-++-.+++++.... +|..--
T Consensus 832 k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~ 886 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGE 886 (913)
T ss_pred HHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCc
Confidence 9999999999999865 234678888888999999999999999988753 665533
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-16 Score=150.54 Aligned_cols=498 Identities=12% Similarity=0.103 Sum_probs=252.6
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHhH
Q 004791 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTF-NTMINGCCKVGNVGEAELYVSKIVQAGLSPD----TFTY 241 (730)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~ 241 (730)
...+...|...|.......+|+..|+-+++....|+.... ..+.+.+.+...+.+|+++|+-.+..-+..+ ....
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 3345555667777788888888888888877666665433 3355667777888888888877665422222 1223
Q ss_pred HHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH--------H
Q 004791 242 TSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYT--------V 313 (730)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--------~ 313 (730)
+.+...+.+.|.++.|+.-|+...+.. |+..+-..|+-++.-.|+-++..+.|.+|......+|..-|. .
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 344445666777777777777665533 666555555555666677777777777776543333332221 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 314 VIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGL 393 (730)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 393 (730)
|+.--.+. +.++.|.+.+-. + -++++-.-.+++.--+.|+.. .+|
T Consensus 358 ll~eai~n-------d~lk~~ek~~ka-~----------------aek~i~ta~kiiapvi~~~fa------~g~----- 402 (840)
T KOG2003|consen 358 LLNEAIKN-------DHLKNMEKENKA-D----------------AEKAIITAAKIIAPVIAPDFA------AGC----- 402 (840)
T ss_pred HHHHHHhh-------HHHHHHHHhhhh-h----------------HHHHHHHHHHHhccccccchh------ccc-----
Confidence 11100000 112222222110 1 111111111111111111110 000
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-h-CCChhHHHHHH
Q 004791 394 MEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQC-R-EGHLDSAYKVL 471 (730)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~-~g~~~~a~~~~ 471 (730)
+-.++.++.-.... .-...-..-...+.+.|+++.|+++++-..++.-......-+.|-..+. + ..++..|.++.
T Consensus 403 -dwcle~lk~s~~~~--la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 403 -DWCLESLKASQHAE--LAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred -HHHHHHHHHhhhhh--hhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 00111111000000 0000000111234555666666666555544322222222222222221 1 12445555554
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004791 472 HLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLP 551 (730)
Q Consensus 472 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 551 (730)
+...... .-+......-.+.....|++++|.+.+++.+..+.. -....-.+.-.+-..|++++|++.|-++... ...
T Consensus 480 d~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~n 556 (840)
T KOG2003|consen 480 DIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLN 556 (840)
T ss_pred HHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHh
Confidence 4443321 112222222222233456677777777766655322 1112222233455667777777766655432 123
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
+..++..+...|-...+..+|++++-+.... ++.|+.+...|...|-+.|+-.+|.+.+-.-... ++-+..+...|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHH
Confidence 5556666666666666777777776665543 3556667777777777777777776665444332 2336666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCChhh
Q 004791 632 AYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLIC-AYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVDE 710 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~~e 710 (730)
-|....-++.|+.+|++..- +.|+..-|..++. ++.+.|+++.|.++|+....+ +.-|..+...|++.....|..+
T Consensus 635 yyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 66666667777777776654 5577777765554 345567777777777776543 4556666666776666666555
Q ss_pred hh
Q 004791 711 RK 712 (730)
Q Consensus 711 ~~ 712 (730)
..
T Consensus 712 ~k 713 (840)
T KOG2003|consen 712 AK 713 (840)
T ss_pred HH
Confidence 43
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-13 Score=143.22 Aligned_cols=556 Identities=15% Similarity=0.104 Sum_probs=375.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHH
Q 004791 111 SYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRV 190 (730)
Q Consensus 111 ~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (730)
......+.+.-.|++++|+.++.++|+. .+.+...|.+|...|-+.|+.+.+...
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkq-------------------------dp~~~~ay~tL~~IyEqrGd~eK~l~~ 195 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQ-------------------------DPRNPIAYYTLGEIYEQRGDIEKALNF 195 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh-------------------------CccchhhHHHHHHHHHHcccHHHHHHH
Confidence 3344445555569999999999888864 245677899999999999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCC
Q 004791 191 YLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCR 270 (730)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 270 (730)
+-.+.... +.|..-|..+.....+.|++++|.-+|.++++..+. +...+-.-...|-+.|+...|..-|.++.....+
T Consensus 196 ~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 196 WLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 87766543 336678999999999999999999999999998543 4333344567888999999999999999875432
Q ss_pred cChh----hHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----
Q 004791 271 RNEV----SYTNLIHGLCEAKRVDEALDLFRRMGED-DCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE----- 340 (730)
Q Consensus 271 ~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----- 340 (730)
.|.. .--.+++.+...++-+.|.+.++..... +-..+...++.++..+.+...++.|......+..+..+
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 2222 2224466677788889999999888763 22345667889999999999999999988887762211
Q ss_pred ----------------------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhCCCHHH
Q 004791 341 ----------------------PNVHTYTVLIDCLCKENKVDEASELLNRMLEKG--LFPNVVTYNALIDGYCKEGLMEA 396 (730)
Q Consensus 341 ----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~ 396 (730)
++..+ .-+.-++.+....+....+.....+.. +.-+...|..+..+|...|++.+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~ 432 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKE 432 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHH
Confidence 12222 123334455566666666666666665 33356778899999999999999
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 004791 397 ALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINE 476 (730)
Q Consensus 397 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 476 (730)
|+.+|..+.......+...|-.+..+|...|..++|.+.|++++... +.+...-..|...+.+.|+.++|.+.+..+..
T Consensus 433 Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 433 ALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 99999999987555567899999999999999999999999999863 33556667788899999999999999998543
Q ss_pred --------CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------------CcCHHHHHHHHH
Q 004791 477 --------SGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI----------------------KAGEVIYTALID 526 (730)
Q Consensus 477 --------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------------------~~~~~~~~~li~ 526 (730)
.+..|+........+.+.+.|+.++-...-..|+.... .........++.
T Consensus 512 ~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~ 591 (895)
T KOG2076|consen 512 PDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIR 591 (895)
T ss_pred CCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHH
Confidence 23445555566667788888988876555554443210 001112222233
Q ss_pred HHHhcCChhHHHHHHHH------HHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCH---HHHHH
Q 004791 527 GYCKEGKIDDAHSLLER------MLSDDCLPNS--YTYNALIDGLYRERKVQEALLLVEKMTKMGV--KPTV---YTYTI 593 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~------~~~~~~~p~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~~---~~~~~ 593 (730)
+-.+.++......-... ....+..-+. ..+.-++..+++.+++++|+.+...+.+..+ .++. ..-..
T Consensus 592 ~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~ 671 (895)
T KOG2076|consen 592 AREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFL 671 (895)
T ss_pred HHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHH
Confidence 33333332211111110 0111111111 2345667788899999999999998886432 1222 22345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSL-GL--KP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~-~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 669 (730)
.+.+.+..+++..|...++.|+.. +. .| -...|+...+...+.|+-.-=.+++..+......-+.......+....
T Consensus 672 ~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~ 751 (895)
T KOG2076|consen 672 GLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLF 751 (895)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHh
Confidence 567778899999999999999874 11 11 234566556666666654444444444443221112333333344566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 670 HLGLIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 670 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
..|.+.-|+..+-+.... .||....+
T Consensus 752 ~~~s~~~Al~~y~ra~~~--~pd~Pl~n 777 (895)
T KOG2076|consen 752 VNASFKHALQEYMRAFRQ--NPDSPLIN 777 (895)
T ss_pred hccchHHHHHHHHHHHHh--CCCCcHHH
Confidence 788999999988777654 67755554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-14 Score=133.09 Aligned_cols=218 Identities=20% Similarity=0.268 Sum_probs=136.1
Q ss_pred cCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhH-HHHHHHHHHHCCCCCCHHhHH
Q 004791 166 LSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMING--CCKVGNVGE-AELYVSKIVQAGLSPDTFTYT 242 (730)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~-A~~~~~~~~~~g~~~~~~~~~ 242 (730)
..+.+=|.|+.. ...|.+.++--+|++|...|+..+...-..|+.. |....++-- -++.|-.|.+.|-. +..+|
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW- 190 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW- 190 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-
Confidence 345566666654 3457788888888888888776666555555433 333333322 23455555555432 22333
Q ss_pred HHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 004791 243 SLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG 322 (730)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 322 (730)
+.|++.+ -+|+..+ .+..++.+||.++|+--..+.|.++|++......+.+..+||.+|.+-.-
T Consensus 191 -------K~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-- 254 (625)
T KOG4422|consen 191 -------KSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY-- 254 (625)
T ss_pred -------ccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--
Confidence 3444443 3444433 35667778888888877778888888777766556777777777765432
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH-H
Q 004791 323 RKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEA----SELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA-A 397 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A 397 (730)
....++..+|......||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |
T Consensus 255 --~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 255 --SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred --hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 22367777777777777888888888777777776544 4566667777777777777777777777666543 3
Q ss_pred HHHHHHH
Q 004791 398 LQILDLM 404 (730)
Q Consensus 398 ~~~~~~m 404 (730)
..++.++
T Consensus 333 s~~i~dI 339 (625)
T KOG4422|consen 333 SSWINDI 339 (625)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-14 Score=134.22 Aligned_cols=455 Identities=17% Similarity=0.215 Sum_probs=280.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--cCChhH-HHHHHHhchhCCCCcChhhHHHHHH
Q 004791 205 TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR--NKDVEK-GFRVFMMMPKKGCRRNEVSYTNLIH 281 (730)
Q Consensus 205 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~-A~~~~~~m~~~~~~~~~~~~~~li~ 281 (730)
+=|.|++. ...|.+.++.-+|++|.+.|++.+...-..|...-+- ..++-- -.+.|-.|.+.|- .+..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW----- 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc-----
Confidence 44445443 3457788888888888888777776666666544332 222222 2344555555442 333444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 282 GLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 361 (730)
+.|.+.+ -+|+.. +.+..+|..||.++|+--..+.|.+++++......+.+..+||.+|.+-.- ..
T Consensus 191 ---K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~ 256 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SV 256 (625)
T ss_pred ---ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hc
Confidence 3344433 223322 335677888888888888888888888887777667777888887766432 23
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH----HHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHH-HHHHH
Q 004791 362 ASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA----ALQILDLMKSNNCSPNARTYNELICGFCKRKNVHR-AMSLL 436 (730)
Q Consensus 362 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~ 436 (730)
..++..+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 36778888888888888888888888888887665 45677788888888888888888888877766533 44444
Q ss_pred HHHHH----CCCCC----ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC----CCCC---HHhHHHHHHHHHhcCCHHH
Q 004791 437 NELLE----QNLSP----TLITYNSLIYGQCREGHLDSAYKVLHLINESG----LVPD---QFTYSVFIDTLCKRGRVEE 501 (730)
Q Consensus 437 ~~~~~----~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~ 501 (730)
.++.. +.++| |...|..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 22332 34445566667777777777777766554321 1222 2345667777788888888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------------
Q 004791 502 AQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRER-------------- 567 (730)
Q Consensus 502 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-------------- 567 (730)
-...|+.|+-.-.-|+..+...++.+..-.|.++-.-+++..+...|...+.....-++..+++..
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA 496 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 888888887776667777777777777777777777777777766553333333333333332221
Q ss_pred ------CHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhc
Q 004791 568 ------KVQEAL-LLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL----KPDVYTYTAFIQAYCSI 636 (730)
Q Consensus 568 ------~~~~A~-~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~ 636 (730)
++.++. .--.+|.+. .-.....+.+.-.+.+.|+.++|.++|.-+.+.+- .|......-+++.-...
T Consensus 497 ~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 111111 111233333 33445666677777888888888888888865432 23333344555666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 637 GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLK 682 (730)
Q Consensus 637 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 682 (730)
.....|...++-|...+...-...-+.+...|.-.....+|+.-+.
T Consensus 575 ~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~l~ 620 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSNLT 620 (625)
T ss_pred CCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhhhh
Confidence 7788888888888776543333344455555554444444544443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-12 Score=136.63 Aligned_cols=360 Identities=12% Similarity=0.080 Sum_probs=225.4
Q ss_pred cCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCcccc
Q 004791 85 LDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSL 164 (730)
Q Consensus 85 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (730)
.+++.+.|.+++.-+.++. +-....|..|..++-..|+.+.+...+..+. +..
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~----------------------- 203 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLN----------------------- 203 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcC-----------------------
Confidence 5699999999999888775 4467889999999999998887655443222 111
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhH---
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTY--- 241 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--- 241 (730)
+.|.--|..+.....+.|.++.|.-.|.++++..+ ++....---...|-+.|+...|..-|.++....++.|..-.
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 33445677777777777888888888888887632 23333344456677788888888888888776432222111
Q ss_pred -HHHHHHHHhcCChhHHHHHHHhchhCCC-CcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----------------
Q 004791 242 -TSLILGYCRNKDVEKGFRVFMMMPKKGC-RRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDD---------------- 303 (730)
Q Consensus 242 -~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------- 303 (730)
-.++..+...++-+.|.+.++.....+. ..+...++.++..|.+...++.|......+..+.
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 2235556666777778877776665221 2344567777888888888888877776665511
Q ss_pred -----------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 304 -----------CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARG--CEPNVHTYTVLIDCLCKENKVDEASELLNRML 370 (730)
Q Consensus 304 -----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 370 (730)
..++...+ -+.-++.+....+....+.......+ +.-++..|.-+..+|...|++.+|..+|..+.
T Consensus 363 ~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred cccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 11122221 11222333333333333333333333 34456677778888888888888888888877
Q ss_pred HCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC--------
Q 004791 371 EKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQ-------- 442 (730)
Q Consensus 371 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------- 442 (730)
......+..+|--+..+|...|.+++|.+.|+...... +-+...-..|...+.+.|+.++|.+.+..+..-
T Consensus 442 ~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~ 520 (895)
T KOG2076|consen 442 NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC 520 (895)
T ss_pred cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence 76544567778888888888888888888888877653 334455556666777788888888887775421
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 004791 443 NLSPTLITYNSLIYGQCREGHLDSAYKVLHLI 474 (730)
Q Consensus 443 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 474 (730)
+..|+..........+.+.|+.++-+.+...|
T Consensus 521 a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 521 AWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 12233333334445556666666544444333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-13 Score=129.37 Aligned_cols=466 Identities=13% Similarity=0.109 Sum_probs=334.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR 250 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 250 (730)
|-....-=...+++..|..+|+++++.. ..+...|...+.+-.+...+.-|..++++.+..-+..|. .|--.+.+--.
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~ 153 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHH
Confidence 3333333345678899999999999865 557788999999999999999999999999986433333 34445555566
Q ss_pred cCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 251 NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEF 330 (730)
Q Consensus 251 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (730)
.|++..|+++|++-.+ +.|+..+|++.|+.-.+....+.|..+|++..-. .|++.+|.-....-.+.|....|..+
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 7999999999999876 5699999999999999999999999999998765 59999999999999999999999999
Q ss_pred HHHHHHC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhCCCHHHHHHH------
Q 004791 331 FNEMSAR-GC-EPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN--VVTYNALIDGYCKEGLMEAALQI------ 400 (730)
Q Consensus 331 ~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~------ 400 (730)
|+..+.. |- ..+...+.+....-..+..++.|..+|.-.++.= +.+ ...|..+...--+.|+.......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 9887754 11 1134556666666677888999999999988762 222 34555555544555654443332
Q ss_pred --HHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHH--------HHHHhCCChhHHH
Q 004791 401 --LDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLI--TYNSLI--------YGQCREGHLDSAY 468 (730)
Q Consensus 401 --~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li--------~~~~~~g~~~~a~ 468 (730)
++.+.+.+ +-|-.+|-..+......|+.+...++|++++.. ++|-.. .|...| -.-....+.+.+.
T Consensus 309 ~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444443 567778888888888889999999999998875 444221 122111 1123456888888
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004791 469 KVLHLINESGLVPDQFTYSVFIDTL----CKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERM 544 (730)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 544 (730)
++++..++. ++....|+..+--+| .++.++..|.+++...+.. -|...++...|..-.+.+.++....++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888887773 444556665554444 4567888888888777644 556778888888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 545 LSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG-VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV 623 (730)
Q Consensus 545 ~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 623 (730)
++-+ |.+-.+|......-...|+.+.|..+|+-+++.. +.-....|...|+.-...|.+++|..+++++++.. +-.
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~ 540 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHV 540 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccc
Confidence 8876 5567778777777777888888888888877632 12234556666777778888888888888888752 334
Q ss_pred HHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 004791 624 YTYTAFIQAYC-----SIG-----------KLDEAEDLIVKMNR 651 (730)
Q Consensus 624 ~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~ 651 (730)
.+|-+...--. +.| ....|..+|+++..
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 46665554332 333 55667777777653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-12 Score=125.99 Aligned_cols=469 Identities=13% Similarity=0.101 Sum_probs=354.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHH
Q 004791 202 NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIH 281 (730)
Q Consensus 202 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 281 (730)
+...|.....--..++++..|..+|++++... ..+...|-..+.+-.++..+..|+.++++.... .|.-...|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 44456555555667788999999999999865 346777888889999999999999999998873 2333345777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 282 GLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 361 (730)
+--..|++..|.++|++..+. .|+..+|++.|..-.+-+..+.|..+|+...- +.|++.+|.-.+..-.+.|.+..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 777899999999999998875 79999999999999999999999999999886 46899999999999999999999
Q ss_pred HHHHHHHHHHC-CC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--hhcHHHHHHHHHhcCC---HHHHHH
Q 004791 362 ASELLNRMLEK-GL-FPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPN--ARTYNELICGFCKRKN---VHRAMS 434 (730)
Q Consensus 362 A~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~---~~~A~~ 434 (730)
|..+|+..++. |- ..+...+.+....-.++..++.|.-+|+-....- +.+ ...|..+...--+-|+ +++++-
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999998764 11 1123445555555566788899999998877652 222 3344444433333444 444432
Q ss_pred H-----HHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH--HhHHHHHHH-----H---HhcCCH
Q 004791 435 L-----LNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQ--FTYSVFIDT-----L---CKRGRV 499 (730)
Q Consensus 435 ~-----~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~-----~---~~~g~~ 499 (730)
- +++++..+ +-|..+|--.+......|+.+...++|++++.. ++|-. ..|...|-. + ....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 2 44455543 457888888899889999999999999999875 33321 122222211 1 246789
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHH----HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 500 EEAQVLFDSLEKKGIKAGEVIYTA----LIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLL 575 (730)
Q Consensus 500 ~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 575 (730)
+.+.++++..++. ++-...++.. ......++.++..|..++...+. ..|...+|...|..-.+.++++.+.++
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999884 3323444444 44445678999999999988764 468899999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 576 VEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL-KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGI 654 (730)
Q Consensus 576 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 654 (730)
|++.++.+ +.+-.+|......-...|+.+.|..+|+-+++... ......|.+.|+--...|.++.|..+++++++..
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt- 537 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT- 537 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc-
Confidence 99999987 66888999888888899999999999999987531 2235578888888889999999999999999853
Q ss_pred CCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 004791 655 VPDSVTYTLLICAYA-----HLG-----------LIYSAFDVLKRMF 685 (730)
Q Consensus 655 ~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 685 (730)
+...+|.....-=. +.| ....|.++|++..
T Consensus 538 -~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 538 -QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred -ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 55557766654332 334 5677888888775
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-13 Score=129.67 Aligned_cols=457 Identities=16% Similarity=0.114 Sum_probs=281.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004791 175 LMQLSKFHLVDEMKRVYLEMLDNMVVPNI----YTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR 250 (730)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 250 (730)
...+.+.+.+..|+..|+-+++.-+..+. ...+.+...+.+.|.+++|+.-|+...+. .|+..+--.|+-++..
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA 321 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee
Confidence 34566778899999999888775322222 24455556778999999999999998875 4776665556666667
Q ss_pred cCChhHHHHHHHhchhCCCCcChhhHH--------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 004791 251 NKDVEKGFRVFMMMPKKGCRRNEVSYT--------NLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG 322 (730)
Q Consensus 251 ~g~~~~A~~~~~~m~~~~~~~~~~~~~--------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 322 (730)
-|+-++..+.|.+|...-..+|..-|. .|+.--.+. +.++.|.+++ + .
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n-------d~lk~~ek~~-k----------------a 377 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN-------DHLKNMEKEN-K----------------A 377 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh-------HHHHHHHHhh-h----------------h
Confidence 899999999999998754334433221 111111100 1222232221 0 1
Q ss_pred CHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 004791 323 RKSEALEFFNEMSARGCEPNVHT-YTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQIL 401 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 401 (730)
+.++++-.-.+++.--+.|+-.. |.--+..+-.....+.|.++ +| .-..-|.++|+++.|.+++
T Consensus 378 ~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl--ei-------------~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 378 DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL--EI-------------NKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh--hh-------------hHHHHHHhccCHHHHHHHH
Confidence 12222222222222222222110 00001111001111111111 00 1122366778888888887
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 004791 402 DLMKSNNCSPNARTYNELICGFCK--RKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGL 479 (730)
Q Consensus 402 ~~m~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 479 (730)
+-..+.+-......-+.|-..+.- ..++.+|.+.-+..+... .-+......-.+.-...|++++|.+.+++.+...-
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 777655322222222222222222 334556665555544321 11222222222333456888888888888876532
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 004791 480 VPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNAL 559 (730)
Q Consensus 480 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 559 (730)
.-....|+ +.-.+...|++++|++.|-++...- ..+..+...+.+.|-...+...|++++.+.... ++.|+..+..|
T Consensus 522 sc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 22222222 2334667889999999888776542 226677778888898899999999999887654 47788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC
Q 004791 560 IDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY-CSIGK 638 (730)
Q Consensus 560 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~ 638 (730)
...|-+.|+-.+|.+++-+--+. ++.+..+...|...|....-+++|+.+|++..- +.|+..-|..++..| .+.|+
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhccc
Confidence 99999999999998887655443 477899999999999999999999999998865 578999998887654 67899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 639 LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVL 681 (730)
Q Consensus 639 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (730)
++.|.++++...++ ++.|.....-|++.+...|.. ++.++-
T Consensus 676 yqka~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~ 716 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYA 716 (840)
T ss_pred HHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHH
Confidence 99999999998875 566888888899888887743 344433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-12 Score=123.77 Aligned_cols=382 Identities=15% Similarity=0.089 Sum_probs=269.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH--H
Q 004791 305 RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTY--N 382 (730)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--~ 382 (730)
..|...+-...-.+.+.|....|++.|......-+- ....|..|.... .+.+.+ ..... |...|.... -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~-~W~AWleL~~li---t~~e~~----~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW-FWSAWLELSELI---TDIEIL----SILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc-chHHHHHHHHhh---chHHHH----HHHHh-cCcccchHHHHH
Confidence 445555555666667788999999999888765221 444444444332 222222 22222 122121111 1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHh
Q 004791 383 ALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNL--SPTLITYNSLIYGQCR 460 (730)
Q Consensus 383 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~ 460 (730)
-+..++-...+.+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+... -.|..+|..++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 24455666668888888888888888766666666666677788899999999999988731 1255667666543222
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 004791 461 EGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSL 540 (730)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 540 (730)
... +..+-+-.-.--+-.+.|...+.+.|.-.++.++|...|++.++.++. ....|+.+..-|....+...|++-
T Consensus 312 ~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 111 111211111101223457778888899999999999999999998765 677899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004791 541 LERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK 620 (730)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 620 (730)
++..++.+ |.|-..|-.|.++|.-.+...-|+-+|++..+.. +.|...|..|+++|.+.++.++|++.|......|-
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d- 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD- 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence 99999876 7788999999999999999999999999999865 66899999999999999999999999999998763
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 621 PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR----EGIVPD--SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 621 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
.+...+..|...|-+.++.++|...+++.++ .|...+ .....-|..-+.+.+++++|..+....... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 3667899999999999999999999888765 243223 222233555677888999988877666543 55555
Q ss_pred HHHHHHHHHHc
Q 004791 695 TYAFLIKHLSN 705 (730)
Q Consensus 695 ~~~~l~~~l~~ 705 (730)
--..|++.+.+
T Consensus 542 eak~LlReir~ 552 (559)
T KOG1155|consen 542 EAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHH
Confidence 56666655543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-11 Score=119.32 Aligned_cols=385 Identities=11% Similarity=0.011 Sum_probs=274.5
Q ss_pred CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhH
Q 004791 268 GCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE-PNVHTY 346 (730)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~ 346 (730)
+...|+..+-.....+-+.|..+.|++.|......- |-.-.+|..|.... .+.+. .......+.. .....=
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVVGLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHhcCcccchHHHH
Confidence 334566655556666778899999999998887652 33444554444332 22222 2222221111 111112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--CCChhcHHHHHHHHH
Q 004791 347 TVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNC--SPNARTYNELICGFC 424 (730)
Q Consensus 347 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~ 424 (730)
--+..++-...+.+++..-.+.....|++.+...-+....+.....++++|+.+|+++.+.+. -.|..+|+.++-.--
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 234556666778889999888888888876666666666667778899999999999998731 125567776664322
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 004791 425 KRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQV 504 (730)
Q Consensus 425 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 504 (730)
...+ +..+.+-.-.--+--+.|...+.+.|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.+
T Consensus 311 ~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 2111 122211111101123467777888899999999999999999987533 56778888999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004791 505 LFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGV 584 (730)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 584 (730)
-++.+++.++. |-..|-.|.++|.-.+.+.-|+-.|++..+.. |.|...|.+|...|.+.++.++|++.|......|
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 99999998765 88999999999999999999999999999875 7789999999999999999999999999999877
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 585 KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
..+...+..+...|-+.++.++|...|++.++. |...+ ......|..-+.+.+++++|..+......-
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------ 536 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------ 536 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------
Confidence 457788999999999999999999999888762 33322 223334556677888888887776665542
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 659 VTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.-..++|..+++++..
T Consensus 537 ------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 537 ------------ETECEEAKALLREIRK 552 (559)
T ss_pred ------------CchHHHHHHHHHHHHH
Confidence 2234677777777764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-12 Score=134.46 Aligned_cols=522 Identities=15% Similarity=0.096 Sum_probs=303.4
Q ss_pred cccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 004791 164 LKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTS 243 (730)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 243 (730)
+.|+.++|..+|..||..|+.+.|- +|.-|.-.....+...++.++.+....++.+.+. .|-..+|+.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 7899999999999999999999998 8888876666667788999999998888888776 578889999
Q ss_pred HHHHHHhcCChhHHHHHHHh-ch-------hCCCCcChh--------------hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004791 244 LILGYCRNKDVEKGFRVFMM-MP-------KKGCRRNEV--------------SYTNLIHGLCEAKRVDEALDLFRRMGE 301 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~-m~-------~~~~~~~~~--------------~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (730)
|..+|.+.||+.. .+..++ |. ..|+...+. .-...+....-.|-.+.+++++..+..
T Consensus 89 Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999999999765 222222 21 122111000 011223333445556666666655543
Q ss_pred CC-CCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 004791 302 DD-CRPTVRTYTVVIFGLCRV-GRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVV 379 (730)
Q Consensus 302 ~~-~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 379 (730)
.. ..|..+ .++-+... ..+++-..+.+...+ .|+..+|..++++-...|+++.|..++.+|.+.|++.+..
T Consensus 168 sa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 168 SAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred ccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 21 111111 23333332 233444444433333 5799999999999999999999999999999999998988
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 380 TYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQC 459 (730)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 459 (730)
-|-.|+-+ .++..-+..++..|.+.|+.|+..|+...+..+.++|....+.. |. +....+++-...-.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~s-q~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GS-QLAHGFTAAVRSAA 308 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------cc-chhhhhhHHHHHHH
Confidence 88877766 78888899999999999999999999988887777655332221 11 12222222222212
Q ss_pred hCC-----Chh-----HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CcCHHHHHHHHH
Q 004791 460 REG-----HLD-----SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI---KAGEVIYTALID 526 (730)
Q Consensus 460 ~~g-----~~~-----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~ 526 (730)
-.| +.+ -....+.+..-.|+......|...+... .+|+-++..++...+..-.. ..++..+..++.
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 222 111 1112222222234444445555444433 25766676666666543211 112334444444
Q ss_pred HHHhcCChhHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-------CCCHHHHHH
Q 004791 527 GYCKEGKIDDAHSLLE--RMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK----MGV-------KPTVYTYTI 593 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~--~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~-------~~~~~~~~~ 593 (730)
.|.+.-+..-...++. +.+... .+.....-+..... .-+...+.+.+..... ... .+-...-+.
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~q 464 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQ 464 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHH
Confidence 4333211110000000 111100 00000011111111 1112222222211110 000 111223345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhc
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG--IVPDSVTYTLLICAYAHL 671 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~ 671 (730)
++..++..-+..+++..-++....-+ ...|..|++-++...+.+.|..+.++..... +..|..-+..+.+.+.+.
T Consensus 465 l~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 465 LHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 55666666666666655554443211 1468888888888888888888888876432 233566677888888888
Q ss_pred CCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHcCChhhhhhhccchhhhHHH
Q 004791 672 GLIYSAFDVLKRMFDAGC-EPS-HHTYAFLIKHLSNKKVDERKQQCDGILFGFKC 724 (730)
Q Consensus 672 g~~~~A~~~~~~m~~~g~-~p~-~~~~~~l~~~l~~~~~~e~~~~~~~~l~~~~~ 724 (730)
+....+.++++++.+.-. .|. ..+...++......|++|..++..++|-++..
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 888888888888865322 232 34556677777778888888888888877543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-11 Score=122.57 Aligned_cols=285 Identities=15% Similarity=0.064 Sum_probs=186.6
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 004791 411 PNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFI 490 (730)
Q Consensus 411 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 490 (730)
.+........+-+...+++.+..++.+++.+.. ++....+..-|..+...|+..+-..+-.++.+.- +....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 344444555555666777777777777777652 3344444444556666777666666666666642 33556677776
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 491 DTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQ 570 (730)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 570 (730)
-.|...|+..+|++.|.+....+.. =...|-.+...|.-.|..++|+..+....+.- +-....+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 6666777777777777776655433 22467777777777777777777777665531 112222233444566677778
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-C-CCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 571 EALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GL-K-PDVYTYTAFIQAYCSIGKLDEAED 644 (730)
Q Consensus 571 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~-p~~~~~~~l~~~~~~~g~~~~A~~ 644 (730)
-|.++|.+..... +.|+..++-+.-.....+.+.+|..+|+..+.. +. . --..+++.|+.+|.+.+++++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 8888887777643 456777777776666777788888777776631 00 0 123457778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 645 LIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 645 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
.+++.+... +.|..++.+++-.|...|+++.|++.|.+.+. +.|+..+...+++..
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 888887753 44777888888888888888888888888774 577776666666544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-09 Score=110.46 Aligned_cols=526 Identities=14% Similarity=0.138 Sum_probs=322.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHH
Q 004791 110 ESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKR 189 (730)
Q Consensus 110 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (730)
..|...++.+.+.|+.-.-+..+.+.+.+.+ +.-....|...+.-....+.++-+.+
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLp-----------------------vtqH~rIW~lyl~Fv~~~~lPets~r 159 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALP-----------------------VTQHDRIWDLYLKFVESHGLPETSIR 159 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCc-----------------------hHhhccchHHHHHHHHhCCChHHHHH
Confidence 3455555566666666555555555544322 11123457777777777788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHHhHHHHHHHHHhcCChhH---HHHH
Q 004791 190 VYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAG------LSPDTFTYTSLILGYCRNKDVEK---GFRV 260 (730)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~---A~~~ 260 (730)
+|++-++. .| ..-+-.|..+++.++.++|.+.+..++... .+.+...|..+-+...+.-+.-. .-.+
T Consensus 160 vyrRYLk~--~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdai 235 (835)
T KOG2047|consen 160 VYRRYLKV--AP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAI 235 (835)
T ss_pred HHHHHHhc--CH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHH
Confidence 88888864 23 336677788888888888888887775321 13344556666665555433322 2223
Q ss_pred HHhchhCCCCcC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----------------
Q 004791 261 FMMMPKKGCRRN--EVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG---------------- 322 (730)
Q Consensus 261 ~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---------------- 322 (730)
++.+...- +| ...|++|++-|.+.|.+++|.++|++.... ...+.-|+.+.+.|....
T Consensus 236 iR~gi~rf--tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~ 311 (835)
T KOG2047|consen 236 IRGGIRRF--TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESG 311 (835)
T ss_pred HHhhcccC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 33333211 23 346888888888888888888888887654 223444444444443321
Q ss_pred ------CHHHHHHHHHHHHHCCC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------hh
Q 004791 323 ------RKSEALEFFNEMSARGC-----------EPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN------VV 379 (730)
Q Consensus 323 ------~~~~A~~~~~~m~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~ 379 (730)
+++-.+.-|+.+..... ..++..|..-+.. ..|+..+-...|.+.++. +.|. ..
T Consensus 312 n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~ 388 (835)
T KOG2047|consen 312 NEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGT 388 (835)
T ss_pred ChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhh
Confidence 11222333333333211 1133344333322 346677777788887764 2222 34
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------
Q 004791 380 TYNALIDGYCKEGLMEAALQILDLMKSNNCSPN---ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSP---------- 446 (730)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 446 (730)
.|..+.+.|-.+|+++.|..+|++..+-..+.- ..+|......-.+..+++.|+++++......-.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 678888999999999999999998876543221 3455555666667788899999888765431111
Q ss_pred -------ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-
Q 004791 447 -------TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGE- 518 (730)
Q Consensus 447 -------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 518 (730)
+...|...++.....|-++....+++.+.+..+- ++.........+-...-++++.+++++-+..-..|++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 2345666677777788888888899988886543 3333333333455666788888888877665444443
Q ss_pred HHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCC--HHHH
Q 004791 519 VIYTALIDGYCK---EGKIDDAHSLLERMLSDDCLPNSYTYNALIDG--LYRERKVQEALLLVEKMTKMGVKPT--VYTY 591 (730)
Q Consensus 519 ~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~ 591 (730)
.+|+..+.-+.+ .-+++.|..+|++.++ +++|...-+-.|+.+ --+.|-...|+.+++++... +++. ...|
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~my 625 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMY 625 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 467766655543 3468899999999998 667654433333322 23568888899999887653 3332 3557
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYT---YTAFIQAYCSIGKLDEAEDLIVKMNREGIVP--DSVTYTLLIC 666 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~ 666 (730)
|..|.-....=-+...+++|++.++. -||... ..-....-++.|..+.|..++....+. ..| +...|.+.=.
T Consensus 626 ni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 626 NIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHH
Confidence 77666554444455667778887775 344332 334445567889999999998877664 234 5677777766
Q ss_pred HHHhcCCHH
Q 004791 667 AYAHLGLIY 675 (730)
Q Consensus 667 ~~~~~g~~~ 675 (730)
-=.++|+-+
T Consensus 703 FEvrHGned 711 (835)
T KOG2047|consen 703 FEVRHGNED 711 (835)
T ss_pred HHHhcCCHH
Confidence 677888843
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-11 Score=119.66 Aligned_cols=480 Identities=13% Similarity=0.030 Sum_probs=307.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR 250 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 250 (730)
+..+++-+....++..|.-+-++....+..| ...--+..+++-.|+++.|..+...-.-. ..|..+.......+.+
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHH
Confidence 3334444445566777777666666555333 33344666777777777776665544221 2466677777777778
Q ss_pred cCChhHHHHHHHhchh--CCCCcChhh---------------HHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 004791 251 NKDVEKGFRVFMMMPK--KGCRRNEVS---------------YTNL-------IHGLCEAKRVDEALDLFRRMGEDDCRP 306 (730)
Q Consensus 251 ~g~~~~A~~~~~~m~~--~~~~~~~~~---------------~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~~ 306 (730)
..++++|..++..... ..+..+..+ -+.- ...|....+.++|...|.+....
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~---- 170 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA---- 170 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----
Confidence 8888888887773211 001011111 0000 11233344455555555555443
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 004791 307 TVRTYTVVIFGLCRVGRKSEALEFFNEMSARGC----EPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYN 382 (730)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 382 (730)
|...|..+...-.. ..-.+.+.++.+..... ..++.....+.....-...-++....-++-.-.+...+.....
T Consensus 171 D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 171 DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 23333222111110 01112122222221110 0111111111111100000011111111011112334566666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 004791 383 ALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREG 462 (730)
Q Consensus 383 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 462 (730)
.-.+-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+=.++.+. .+..+.+|.++.-.|...|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 67777888999999999999998875 667777777788888899888888887888776 4557889999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004791 463 HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLE 542 (730)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 542 (730)
+..+|.+.|.+....+.. =...|-.+...|+-.|..|+|...+..+-+.-+. ...-+--+.--|.+.++.+.|...|.
T Consensus 327 k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred CcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999987654322 2357888899999999999999999887765221 22223344556888999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 543 RMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM----G--VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 543 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
+..... |.|+..++-+.-.....+.+.+|..+|+..+.. + ..-...+++.|+.+|.+.+.+++|+..+++.+.
T Consensus 405 ~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 405 QALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 988764 678888888888888889999999999887731 1 112456788999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 617 LGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAY 668 (730)
Q Consensus 617 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 668 (730)
...+ +..++.+++-.|...|+++.|++.|.+... +.||..+...++..+
T Consensus 484 l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 484 LSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred cCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 7544 888999999999999999999999999987 678876666665543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-11 Score=120.57 Aligned_cols=222 Identities=18% Similarity=0.180 Sum_probs=176.7
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHH
Q 004791 458 QCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDA 537 (730)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 537 (730)
+.-.|+.-.|.+-|+..+.....++. .|-.+..+|....+.++....|....+.++. ++.+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 34567888899999988887544333 2666677899999999999999999988766 777888888888888999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004791 538 HSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 617 (730)
..-|++.+..+ +.+...|-.+.-+..+.+++++++..|++.++. ++.-+..|+.....+..++++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999999876 556777888877888899999999999999875 4667889999999999999999999999999875
Q ss_pred CCC-----CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 618 GLK-----PDVYTY--TAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 618 ~~~-----p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
... .+...+ -.++- +.-.+++..|..++.+..+. .| ....|..|...-...|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 322 112111 12221 22348899999999999984 45 577899999999999999999999998864
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-12 Score=132.01 Aligned_cols=252 Identities=13% Similarity=0.109 Sum_probs=101.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 004791 319 CRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAAL 398 (730)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 398 (730)
.+.|+++.|.+.+.++.+....+...........+...|++++|...++++.+..+. +......+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHH
Confidence 444555555555544443321111111112234444455555555555554444322 3444444445555555555555
Q ss_pred HHHHHHHhCCCCCCh-------hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHH
Q 004791 399 QILDLMKSNNCSPNA-------RTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVL 471 (730)
Q Consensus 399 ~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 471 (730)
+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555443321111 01111111111122222233333322211 1223334444444444444544444444
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004791 472 HLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLP 551 (730)
Q Consensus 472 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 551 (730)
++..+. .++.... ++.+....++.+++.+..+...+..+. |...+..+...+.+.+++++|.+.|+...+.. |
T Consensus 287 ~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P 359 (398)
T PRK10747 287 LDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--P 359 (398)
T ss_pred HHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence 444432 2222111 111122234444444444444444332 34444444445555555555555555544432 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKM 579 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m 579 (730)
+...+..+...+.+.|+.++|.+++++.
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444555555554444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-12 Score=131.24 Aligned_cols=131 Identities=16% Similarity=0.002 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYT---YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV--YTY 626 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~ 626 (730)
+...+..+...+...|+.++|.+.+++..+.. ||... ...........++.+.+.+.+++..+..+. |. ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHH
Confidence 55566666666666666666666666666543 22221 111111222345666777777776664322 34 455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 627 TAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 627 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
.++.+.+.+.|++++|.+.|++.......|+...+..++..+.+.|+.++|.+++++.+
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67777777777777777777743322245777777777777777777777777777654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-12 Score=129.77 Aligned_cols=289 Identities=15% Similarity=0.082 Sum_probs=142.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHH--HHHHHHHhcCCHHHH
Q 004791 356 ENKVDEASELLNRMLEKGLFPNVVT-YNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYN--ELICGFCKRKNVHRA 432 (730)
Q Consensus 356 ~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~A 432 (730)
.|++++|++.+....+.. +++.. |........+.|+++.|.+.+.++.+. .|+..... .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666666655544431 11222 222233335666666666666666554 33332222 224455556666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 433 MSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK 512 (730)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 512 (730)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------------------- 228 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------------------
Confidence 66666665543 224445555555666666666666666655554332111 111000
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004791 513 GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYT 592 (730)
Q Consensus 513 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 592 (730)
...|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+.+++..+. ++|....
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~- 299 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV- 299 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-
Confidence 001111122222222333333344333222 1334555555555666666666666666555552 3343221
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 672 (730)
++.+....++.+++++..++..+..+. |...+..+...+.+.|++++|.+.|+++.+ ..|+...+..+..++.+.|
T Consensus 300 -~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 300 -LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLH 375 (398)
T ss_pred -HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcC
Confidence 122222345666666666666554322 444555666666666666666666666665 3466666666666666666
Q ss_pred CHHHHHHHHHHHH
Q 004791 673 LIYSAFDVLKRMF 685 (730)
Q Consensus 673 ~~~~A~~~~~~m~ 685 (730)
+.++|.+++++-+
T Consensus 376 ~~~~A~~~~~~~l 388 (398)
T PRK10747 376 KPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-12 Score=131.22 Aligned_cols=121 Identities=15% Similarity=0.145 Sum_probs=65.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004791 285 EAKRVDEALDLFRRMGEDDCRPT-VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEAS 363 (730)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 363 (730)
..|+++.|.+.+.+..+.. |+ ...+-.......+.|+++.|.+.+.+..+....+...........+...|++++|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4566666666666655442 22 23333445555566666666666666554432222223333455555666666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 004791 364 ELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNN 408 (730)
Q Consensus 364 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 408 (730)
..++.+.+..+. +..++..+...+.+.|++++|.+++..+.+.+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 666666655432 44555556666666666666666666665553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-09 Score=103.65 Aligned_cols=535 Identities=13% Similarity=0.124 Sum_probs=360.1
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004791 168 VKGYNTLLMQLSKFHLVDEMKRVYLEMLDNM-VVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLIL 246 (730)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 246 (730)
+..|-..+..+.++|++..-+..|++++..- +......|...+......+-.+-+..++++.++. ++..-+-.|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 4678888888899999999999999998763 2334458999999999999999999999999885 4445778899
Q ss_pred HHHhcCChhHHHHHHHhchhCC------CCcChhhHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCC--hhhHHHHH
Q 004791 247 GYCRNKDVEKGFRVFMMMPKKG------CRRNEVSYTNLIHGLCEAKRVD---EALDLFRRMGEDDCRPT--VRTYTVVI 315 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~--~~~~~~li 315 (730)
.+++.+++++|.+.+..+.... .+.+-..|..+-+...++-+.- ....+++.+..+ -+| ...|.+|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 9999999999999998876522 2334456766666665543322 334455555443 234 35799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCC
Q 004791 316 FGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKEN----------------------KVDEASELLNRMLEKG 373 (730)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~~~~~g 373 (730)
+.|.+.|.++.|.++|++.+.. ...+.-|+.+.+.|+.-. +++-...-|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999998875 224445555555554321 1233344444444432
Q ss_pred C-----------CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC------ChhcHHHHHHHHHhcCCHHHHHHHH
Q 004791 374 L-----------FPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSP------NARTYNELICGFCKRKNVHRAMSLL 436 (730)
Q Consensus 374 ~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~ 436 (730)
. +.++..|..-+. +..|+..+-...|.+..+. +.| -...|..+.+.|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 123334433333 3356777778888877653 122 2345788889999999999999999
Q ss_pred HHHHHCCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC----------C-------CHHhHHHHHHHHHhc
Q 004791 437 NELLEQNLSPT---LITYNSLIYGQCREGHLDSAYKVLHLINESGLV----------P-------DQFTYSVFIDTLCKR 496 (730)
Q Consensus 437 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~li~~~~~~ 496 (730)
++..+-..+-- ..+|..-...-.+..+++.|+++++......-. | +...|..+++..-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99987654322 345666666667778899999988876542111 1 234567777777788
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHH
Q 004791 497 GRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS-YTYNALIDGLYR---ERKVQEA 572 (730)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~~~~~~A 572 (730)
|-++....+++.+++..+. ++.+.......+-.+.-++++.+.+++-+..-..|++ ..|+..+.-+.+ ....+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 9999999999999988665 4444444445556677789999999887776545655 356666655543 3478999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 573 LLLVEKMTKMGVKPTVYTYTILI--EEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVK 648 (730)
Q Consensus 573 ~~~~~~m~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 648 (730)
..+|++.++ |.+|...-+-.|+ ..--+.|-...|+.+++++... +++. ...|+..|.--...=-...-..++++
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 999999999 6666543332222 2334578899999999997653 3332 34577766543332224556788888
Q ss_pred HHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCChhhhhhhccchh
Q 004791 649 MNREGIVPDSVTYT---LLICAYAHLGLIYSAFDVLKRMFDAGCEP--SHHTYAFLIKHLSNKKVDERKQQCDGIL 719 (730)
Q Consensus 649 m~~~g~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~l~~~~~~e~~~~~~~~l 719 (730)
+++. -||..+-. -....=++.|..+.|..++.-..+. +.| +...|.+-=..=.+.|+.+-.++...+=
T Consensus 648 aIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keMLRik 720 (835)
T KOG2047|consen 648 AIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIK 720 (835)
T ss_pred HHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8883 56654433 2334457789999999998877653 344 3444555555556778766666554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-11 Score=117.62 Aligned_cols=223 Identities=16% Similarity=0.115 Sum_probs=171.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 004791 423 FCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEA 502 (730)
Q Consensus 423 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 502 (730)
+.-.|+...|..-|+..++....+ ...|.-+...|....+.++..+.|....+.+.. +..+|..-.+++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 445678888888888888764332 222777778888899999999999988886543 556676667777778899999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 503 QVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
..=|++.+...+. +...|-.+.-+..+.+++++++..|++..+. +|..+..|+.....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999887654 6677777777778899999999999998876 4677889999999999999999999999998864
Q ss_pred C-----CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 583 G-----VKPTVYTY--TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 583 ~-----~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
. +..+...+ -.++-. --.+++..|.++++++.+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 11122222 111111 1348999999999999987655 566899999999999999999999998775
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=144.31 Aligned_cols=261 Identities=16% Similarity=0.146 Sum_probs=78.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 004791 173 TLLMQLSKFHLVDEMKRVYLEMLDNMVVP-NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRN 251 (730)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 251 (730)
.+...+.+.|++++|+.++.+.......| |...|..+.......+++++|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555666677777777775444332122 3334444444555566677777777766665432 34445555555 466
Q ss_pred CChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 252 KDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDD-CRPTVRTYTVVIFGLCRVGRKSEALEF 330 (730)
Q Consensus 252 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (730)
+++++|.++++...+.. ++...+..++..+.+.|+++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666665554322 444555556666666666666666666654321 234555566666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 004791 331 FNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCS 410 (730)
Q Consensus 331 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 410 (730)
+++.++..+. |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 6666665433 45556666666666666666666666555442 2344555566666666666666666666665542 3
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 411 PNARTYNELICGFCKRKNVHRAMSLLNELL 440 (730)
Q Consensus 411 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 440 (730)
.|..+...+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 355555666666666666666666655543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=143.80 Aligned_cols=259 Identities=17% Similarity=0.176 Sum_probs=77.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 004791 420 ICGFCKRKNVHRAMSLLNELLEQN-LSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGR 498 (730)
Q Consensus 420 i~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 498 (730)
...+.+.|++++|++++.+..... .+.+...|..+.......++.+.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555554333222 1223333444444444455555555555555544322 33334444444 45555
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 499 VEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDD-CLPNSYTYNALIDGLYRERKVQEALLLVE 577 (730)
Q Consensus 499 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 577 (730)
+++|.+++....+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666655555544332 233444555555666666666666666654321 23445555566666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 578 KMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 578 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
+.++.. +.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|..++++..+.. +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 666543 3345556666666666666666666666555532 2234455666666666666666666666666533 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 658 SVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
......++.++...|+.++|.++.++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6666666666666666666666666554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-12 Score=131.17 Aligned_cols=200 Identities=16% Similarity=0.130 Sum_probs=135.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 561 (730)
.+.+|..+.++|.-+++.+.|++.|++.++.++. ...+|+.+..-+.....+|.|...|+..+..+ +-+...|--+.-
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhh
Confidence 4566777777777777777777777777765433 45666666666677777777777777766543 222334445556
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
.|.+.++++.|.-.|+++.+.+ +-+.+....++..+-+.|+.++|+++++++...+.+ |...-...+..+...+++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHH
Confidence 6777777777777777777655 446666667777777777777777777777776544 44444455566667778888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 642 AEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 642 A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
|+..++++++ +.| +...+..++..|.+.|+.+.|+.-|--+.+.
T Consensus 576 al~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 576 ALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 8888888777 445 3566777777788888888887777777654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-11 Score=113.19 Aligned_cols=287 Identities=17% Similarity=0.148 Sum_probs=190.7
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHhCCC
Q 004791 390 KEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTL------ITYNSLIYGQCREGH 463 (730)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~ 463 (730)
-..+.++|.++|-+|.+.+ +.+..+.-+|.+.|.+.|.+|+|+++.+.+.++ ||. .....|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 3567888888888888753 334555667888888888888888888888775 332 234556777788888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCChhHHHH
Q 004791 464 LDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGE----VIYTALIDGYCKEGKIDDAHS 539 (730)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~ 539 (730)
+|.|..+|..+.+.+. --......++..|-...++++|+++-+++.+.+..+.. ..|..|...+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 8888888888776432 23456677777888888888888888877776544332 245556666666777788888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004791 540 LLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL 619 (730)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 619 (730)
++.+..+.+ +..+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|.+.|+.++...++.++.+...
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 888877765 4445555566677777888888888888777765444456667777788888888888888877777543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 004791 620 KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH---LGLIYSAFDVLKRMFD 686 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~ 686 (730)
.++. -..+...-....-.+.|..++.+-... +|+...+..|+..... .|...+-+..+++|..
T Consensus 281 g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3332 233333333333345555555444442 5777777777765433 3456666667777764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-12 Score=132.42 Aligned_cols=200 Identities=14% Similarity=0.055 Sum_probs=118.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 526 (730)
.+.+|..+.+.|.-+++.+.|++.|++..+.+. -...+|+.+..-+.....+|.|...|+..+...+. +...|..+..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhh
Confidence 445566666666666666666666665555321 13455555555555556666666666666554332 3344455566
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDH 606 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 606 (730)
.|.+.++++.|+-.|+++++.+ |.+.+....+...+.+.|+.++|+.+++++.... +.|+..-...+..+...+++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHH
Confidence 6666666666666666666655 4455555556666666666677777766666554 3344444445555566667777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 607 AHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 607 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|+..++++.+.-+ .+..++..++..|.+.|+.+.|+.-|.-|.+
T Consensus 576 al~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 576 ALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 7777777666421 1455566666677777777777666666665
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-10 Score=108.03 Aligned_cols=411 Identities=15% Similarity=0.153 Sum_probs=174.4
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 004791 246 LGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKS 325 (730)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (730)
.++...|++++|...+..+.+.. .++...+..|.-++.-.|.+.+|..+-.+..+ +...-..+...-.+.++-+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHH
Confidence 34445555555555555444322 23444444455555555555555555443322 2223333444444555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-HHHHHHhCCCHHHHHHHHHHH
Q 004791 326 EALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNA-LIDGYCKEGLMEAALQILDLM 404 (730)
Q Consensus 326 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m 404 (730)
+-..+...+... ..--.+|.......-.+.+|++++..++..+ |+....|. +.-+|.+..-++-+.++++-.
T Consensus 139 ~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 139 RILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 555544444321 1222334444444445566666666655432 22222222 223344555555555555554
Q ss_pred HhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC-----CChhHHHHHHHHHHhCCC
Q 004791 405 KSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCRE-----GHLDSAYKVLHLINESGL 479 (730)
Q Consensus 405 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~ 479 (730)
... ++.++...|..+....+.=.-..|.+-..++.+.+-.. ...+.-.++. .+-+.|++++--+.+.
T Consensus 212 L~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~-- 283 (557)
T KOG3785|consen 212 LRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH-- 283 (557)
T ss_pred HHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--
Confidence 443 12223333443333333222222222223332221100 0112222222 2334555555444332
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH-----HHHHHhcCChhHHHHHHHHHHhCCCCCCH-
Q 004791 480 VPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTAL-----IDGYCKEGKIDDAHSLLERMLSDDCLPNS- 553 (730)
Q Consensus 480 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 553 (730)
- +.....++-.|.+.+++.+|..+.+++... .|-..+...+ .+-........-|...|+-.-..+..-|.
T Consensus 284 I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 284 I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred C--hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 1 112223344455666666666655444321 1111111111 11111112233344444333222211111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTY-TAFIQA 632 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~ 632 (730)
.--.++.+.+.-..++++.+.+++.+...-...|...+| +..+++..|++.+|+++|-++....++ |..+| ..|.++
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArC 437 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARC 437 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHH
Confidence 112233344444455666666666555543333333333 455666666666666666555433333 33344 334456
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 633 YCSIGKLDEAEDLIVKMNREGIVPDS-VTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 633 ~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
|.+.|+.+.|++++-++.. +.+. .....+..-|.+.+.+--|-+.|+.+..
T Consensus 438 yi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 6666666666655544432 1122 2233334456666666666666665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-11 Score=110.74 Aligned_cols=287 Identities=17% Similarity=0.150 Sum_probs=193.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh------hcHHHHHHHHHhcCCH
Q 004791 356 ENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA------RTYNELICGFCKRKNV 429 (730)
Q Consensus 356 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~~~~ 429 (730)
..+.++|.++|-+|.+.... ...+.-+|.+.|-+.|..|.|+++...+.+. ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 35678888888888775222 4455567888888888888888888877764 332 2234556667788888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHH
Q 004791 430 HRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQ----FTYSVFIDTLCKRGRVEEAQVL 505 (730)
Q Consensus 430 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~ 505 (730)
|.|..+|..+.+.+. .-......|+..|-...+|++|+++-+++...+..+.. ..|..+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 888888888877532 23455667788888888888888888877776544332 2344555555566788888888
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004791 506 FDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVK 585 (730)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 585 (730)
+.+..+.+++ .+..--.+.+.+...|++..|.+.++.+.+.+..--..+...|..+|.+.|+.++...++..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 8888777544 4555556777788888888888888888877633334567778888888888888888888877753
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHC
Q 004791 586 PTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC---SIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 586 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~ 652 (730)
+....-..+...-....-.+.|...+.+-+.. +|+...+..++..-. ..|+..+-..+++.|...
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33333344444444444555666655555443 577777777776553 345566667777777654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.1e-10 Score=115.66 Aligned_cols=266 Identities=17% Similarity=0.127 Sum_probs=150.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHh--hcCCccccccCHHhHHHHHHHH
Q 004791 101 QKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVN--ESGSEFSLKLSVKGYNTLLMQL 178 (730)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~ 178 (730)
+..|..|+..+|.++|..|+..|+.+.|- ++..|-......+. -++..+..-. .+..+-.-.|...+|..|..+|
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e--~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVRE--GVFRGLVASHKEANDAENPKEPLADTYTNLLKAY 93 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccc--hhHHHHHhcccccccccCCCCCchhHHHHHHHHH
Confidence 34678889999999999999999998887 55444322211111 1111111110 0111111245667777777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhcCChhHH
Q 004791 179 SKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQ-AGLSPDTFTYTSLILGYCRNKDVEKG 257 (730)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A 257 (730)
.+.|++.. ++..++ -...+...+...|.-..-..++..+.- .+.-||.. .++....-.|-++.+
T Consensus 94 r~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaql 158 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQL 158 (1088)
T ss_pred HhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHH
Confidence 77777665 222221 111223333333433333333332211 11222322 233334455667777
Q ss_pred HHHHHhchhCCCCcChhhHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 258 FRVFMMMPKKGCRRNEVSYTNLIHGLCE-AKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA 336 (730)
Q Consensus 258 ~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (730)
++++..++.......... +++-... .-.+++-..+.....+ .|+..+|..++..-...|+.+.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 777766654332111111 1222222 2223333333333332 47888888888888888888888888888888
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 337 RGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGL 393 (730)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 393 (730)
.|+..+..-|-.|+-+ .++..-++.++.-|.+.|+.|+..|+...+..+..+|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888777766666655 67777788888888888888888888877777776655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-10 Score=107.18 Aligned_cols=284 Identities=16% Similarity=0.125 Sum_probs=159.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 286 AKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASEL 365 (730)
Q Consensus 286 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 365 (730)
.|++..|+++..+-.+.+-. ....|..-+.+--+.|+.+.+-.++.+..+....++...+.+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68888888888887766522 35566667777778889999998888888775566777788888888888999999888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChh-------cHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 366 LNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNAR-------TYNELICGFCKRKNVHRAMSLLNE 438 (730)
Q Consensus 366 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~~~~~~A~~~~~~ 438 (730)
..++.+.+.. ++.+......+|.+.|++.+...++..|.+.|.-.+.. +|..++.-....+..+.-...+++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888887654 67777888888889999999888888888876443322 233333333333333332233332
Q ss_pred HHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH
Q 004791 439 LLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGE 518 (730)
Q Consensus 439 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 518 (730)
...+ ...++..-..++.-+.++|+.++|.++.++..+++..|.. ..++ .+.+-++.+.-++..+...+..+. ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~-~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPE-DP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence 2221 1222333333444444444444444444444444333321 1111 122333333333333333333211 33
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKM 579 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 579 (730)
..+.+|...|.+.+.+.+|...|+..++.+ |+..+|+.+.+++.+.|+.++|.+++++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 444444444444444444444444443332 44444444444444444444444444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-09 Score=108.35 Aligned_cols=93 Identities=20% Similarity=0.231 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLGLKPD-VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHL 671 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 671 (730)
.++..+-+.|+++.|...++.++.+ .|+ ...|..-.+.+...|.+++|..++++..+.+ .+|...-..-+.-..++
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 4455566667777777777666654 333 2234444566666677777777777666644 33433322334444556
Q ss_pred CCHHHHHHHHHHHHHcC
Q 004791 672 GLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 672 g~~~~A~~~~~~m~~~g 688 (730)
++.++|.++.-.....|
T Consensus 453 n~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREG 469 (700)
T ss_pred cccHHHHHHHHHhhhcc
Confidence 66666666666665444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-10 Score=108.81 Aligned_cols=293 Identities=14% Similarity=0.139 Sum_probs=177.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 004791 321 VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQI 400 (730)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 400 (730)
.|++..|.+...+-.+.+.. ....|..-+.+.-..|+.+.+-.++.+..+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 58888888888877666544 34556666777777888888888888887764445666777777888888888888888
Q ss_pred HHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 004791 401 LDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLV 480 (730)
Q Consensus 401 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 480 (730)
.+++.+.+ +.+..........|.+.|++.+...++.++.+.+.-.+...-..
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 88887765 55667777788888888888888888888888765444321000
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004791 481 PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALI 560 (730)
Q Consensus 481 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 560 (730)
...+|..+++-....+..+.-...++....+ .+-++.+-..++.-+.++|+.++|.++.++.++.+..|. -...
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRL 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHH
Confidence 0112233333222223333323333333222 122344445555555666666666666666555543333 1111
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
-.+.+.++.+.-++..++..+.. +.++-.+.+|+..|.+.+.|.+|.+.|+...+. .|+..+|+.+.+++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 22334555555555555554432 334456666666666666666666666655553 456666666666666666666
Q ss_pred HHHHHHHHHHH
Q 004791 641 EAEDLIVKMNR 651 (730)
Q Consensus 641 ~A~~~~~~m~~ 651 (730)
+|.+..++...
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 66666666553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-09 Score=104.72 Aligned_cols=456 Identities=14% Similarity=0.115 Sum_probs=263.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 004791 181 FHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRV 260 (730)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 260 (730)
.+++...+...+.+++. ..-...|.....-.++..|+-++|.......++..+. +.+.|..+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 35666666666666653 2223334433344455668888888877777765443 566777777777777788888888
Q ss_pred HHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 004791 261 FMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARG-C 339 (730)
Q Consensus 261 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 339 (730)
|......+ +.|...|.-+.-.-.+.|+++.....-.+..+.. +.....|...+.++.-.|++..|..+.++..+.. -
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88776643 2455666666666667777777777666666543 3345567777777777888888888888777653 2
Q ss_pred CCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh
Q 004791 340 EPNVHTYTVLI------DCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA 413 (730)
Q Consensus 340 ~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 413 (730)
.|+...|.-.. ....+.|..++|.+.+...... +.-....-.+-...+.+.+++++|..++..+... .||.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 34544443322 3345567777777766554432 1112222334456677788888888888888877 3555
Q ss_pred hcHHHH-HHHHHhcCCHHHHH-HHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004791 414 RTYNEL-ICGFCKRKNVHRAM-SLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFID 491 (730)
Q Consensus 414 ~~~~~l-i~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 491 (730)
..|... ..++.+-.+.-++. .+|....+. .+.....-..=+.......-.+..-+++..+.+.|+++- +..+..
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~S 328 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRS 328 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHH
Confidence 555443 33443333333343 455544432 111110000001111112223334455666677776532 233332
Q ss_pred HHHhcCCHHHHHHHHHHHHH----cC----------CCcCHHHHHH--HHHHHHhcCChhHHHHHHHHHHhCCCCCC-HH
Q 004791 492 TLCKRGRVEEAQVLFDSLEK----KG----------IKAGEVIYTA--LIDGYCKEGKIDDAHSLLERMLSDDCLPN-SY 554 (730)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 554 (730)
.|-.-...+-..++.-.+.. .| -+|....|+. ++..|-+.|+++.|..+++..+... |+ +.
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliE 406 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIE 406 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chHHH
Confidence 22221111111111111110 00 1345555544 5666778888888888888887653 44 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--C----HHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--D----VYTYTA 628 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~----~~~~~~ 628 (730)
.|..-...+...|++++|..++++..+.+ .+|...-.-.+.-..++.+.++|.++.......|... + .-+|-.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 56666677888888999988888888876 5777666667777778888888888888887766411 1 111222
Q ss_pred H--HHHHHhcCCHHHHHHHHHHHH
Q 004791 629 F--IQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 629 l--~~~~~~~g~~~~A~~~~~~m~ 650 (730)
+ +.+|.++|++.+|++-|....
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHH
Confidence 1 346777777777776655543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-09 Score=99.72 Aligned_cols=453 Identities=12% Similarity=0.073 Sum_probs=263.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHH
Q 004791 178 LSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKG 257 (730)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 257 (730)
+...+++..|+.+++-....+-.-...+-..+..++...|++++|...+..+.... .++...+-.|.-++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 34457788888887766654433222344456677778899999999998887643 45666666666666677888888
Q ss_pred HHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 258 FRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSAR 337 (730)
Q Consensus 258 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (730)
..+-....+ ++-.-..|.+.-.+.++-++-..+-..+.+. ..---++.......-.+.+|++++...+..
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888766543 3334444555566677766666665555432 222334445555556788999999988876
Q ss_pred CCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcH
Q 004791 338 GCEPNVHTYTV-LIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTY 416 (730)
Q Consensus 338 ~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 416 (730)
+. +-...|. +.-+|.+..-++-+.+++.-.++. ++-++...|..+....+.=.-..|.+-.+.+...+-.. |
T Consensus 181 n~--ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~ 253 (557)
T KOG3785|consen 181 NP--EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y 253 (557)
T ss_pred Ch--hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c
Confidence 42 3333333 445667777788888888777765 33345555555544444322233333334444332110 1
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004791 417 NELICGFCKR-----KNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFID 491 (730)
Q Consensus 417 ~~li~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 491 (730)
..+.-+++. .+-+.|++++-.+.+. -| ..-..|+-.|.+.+++.+|..+.+.+.- ..|-......++.
T Consensus 254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred -hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 122222322 2345667766655542 12 2333456667788888888877765432 1232222222221
Q ss_pred H-----HHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004791 492 T-----LCKRGRVEEAQVLFDSLEKKGIKAGE-VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR 565 (730)
Q Consensus 492 ~-----~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 565 (730)
+ ........-|.+.|+-.-..+..-|. .-...+...+.-..++++.+..+..+..--...|...+| +..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 1 11122344556666555444332222 223445555555667777777777766543334444444 6777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 004791 566 ERKVQEALLLVEKMTKMGVKPTVYTY-TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYT-YTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~ 643 (730)
.|++.+|.++|-.+....++ |..+| ..+..+|.+.|..+-|++++-++- .+.+..+ ...+..-|.+.+.+=-|-
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888776654443 34444 455677788888888877765542 2223333 334456677888887888
Q ss_pred HHHHHHHHCCCCCCHHHHH
Q 004791 644 DLIVKMNREGIVPDSVTYT 662 (730)
Q Consensus 644 ~~~~~m~~~g~~~~~~~~~ 662 (730)
+.|+.+.. ..|++..|.
T Consensus 482 KAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 482 KAFDELEI--LDPTPENWE 498 (557)
T ss_pred HhhhHHHc--cCCCccccC
Confidence 88888776 457766664
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-09 Score=110.30 Aligned_cols=486 Identities=14% Similarity=0.092 Sum_probs=258.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH
Q 004791 180 KFHLVDEMKRVYLEMLDNMVVPNIYTFNTMING---CCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEK 256 (730)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 256 (730)
+.+..++++.-|......+...+..++-.+-.. |...|+.+++ .+...+... .-|....+.+.+..
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es-~i~Re~~~d~ilsl--------- 307 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEES-LIPRENIEDAILSL--------- 307 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhh-ccccccHHHHHHHH---------
Confidence 456677788888777777666666555554433 2344555544 222222111 11111111111100
Q ss_pred HHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 257 GFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA 336 (730)
Q Consensus 257 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (730)
.-.+.++....+..|...|..|.-++...|+++.+.+.|++....- ......|+.+...|...|.-..|..++++-..
T Consensus 308 -m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 308 -MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred -HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 0112222222233455555566666666666666666666654331 22345566666666666666666666655544
Q ss_pred CCCCCC-hhhHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCChhhHHHHHHHHHhC-----------CCHHHHHH
Q 004791 337 RGCEPN-VHTYTVLIDCLC-KENKVDEASELLNRMLEK--GL--FPNVVTYNALIDGYCKE-----------GLMEAALQ 399 (730)
Q Consensus 337 ~~~~~~-~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~ 399 (730)
....|+ ...+......|. +.+.+++++..-.+++.. +. ......|..+.-+|... ....++++
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 332232 222222222222 234455555544444431 10 11233333333333221 13445566
Q ss_pred HHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 004791 400 ILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGL 479 (730)
Q Consensus 400 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 479 (730)
.+++..+.+ +.|......+.--|+..++++.|.+..++.++-+...+...|..|.-.+...+++.+|+.+.+...+.-
T Consensus 466 ale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~- 543 (799)
T KOG4162|consen 466 ALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF- 543 (799)
T ss_pred HHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-
Confidence 666665543 223333333334455566666666666666665445566666666666666666666666665544320
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------------------CCCcCHHHHHHHHHHHHhc
Q 004791 480 VPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK----------------------------GIKAGEVIYTALIDGYCKE 531 (730)
Q Consensus 480 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------------~~~~~~~~~~~li~~~~~~ 531 (730)
..|......-+..-...++.+++......+... .......++..+......
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~- 622 (799)
T KOG4162|consen 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS- 622 (799)
T ss_pred hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh-
Confidence 011111111111112233444433333222210 001011122222111110
Q ss_pred CChhHHHHHHHHHHhCCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004791 532 GKIDDAHSLLERMLSDDC--LPN------SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD 603 (730)
Q Consensus 532 g~~~~A~~~~~~~~~~~~--~p~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 603 (730)
+...+..-.. +..... .|+ ...|......+.+.+..++|...+.+..... +-....|...+..+...|.
T Consensus 623 -~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 623 -QLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred -hhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHh
Confidence 0000000000 111111 122 2245566677788899999998888887754 5577788888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 604 FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAED--LIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVL 681 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (730)
.++|.+.|......++. ++....++..++.+.|+..-|.. ++..+.+.+ +.+...|..++..+.+.|+.++|.+-|
T Consensus 700 ~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 99999999999886433 56688999999999998888888 999999965 347999999999999999999999999
Q ss_pred HHHHH
Q 004791 682 KRMFD 686 (730)
Q Consensus 682 ~~m~~ 686 (730)
....+
T Consensus 778 ~aa~q 782 (799)
T KOG4162|consen 778 QAALQ 782 (799)
T ss_pred HHHHh
Confidence 98875
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-08 Score=106.09 Aligned_cols=128 Identities=18% Similarity=0.104 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK 600 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 600 (730)
|......+.+.+..++|...+.+..... +-....|......+...|..++|.+.|......+ +.+......+..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3444444455555555554444444332 2333444444444445555555555555554433 2334444555555555
Q ss_pred cCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 601 EGDFDHAHR--LLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 601 ~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.|+-.-|.. ++..+.+.++. +...|..+...+.+.|+.++|.+.|+...+
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 554444444 55555554422 455555555555555555555555555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-08 Score=99.61 Aligned_cols=445 Identities=16% Similarity=0.169 Sum_probs=249.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH--HHHHHH--h
Q 004791 175 LMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTS--LILGYC--R 250 (730)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~--li~~~~--~ 250 (730)
++.+...+++++|...-.+++..+ +-|...+..-+.++.+.++|++|+.+.+.-.. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 344567789999999999998865 44666778888889999999999955543321 112222 244555 7
Q ss_pred cCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-hcCCHHHHHH
Q 004791 251 NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLC-RVGRKSEALE 329 (730)
Q Consensus 251 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~ 329 (730)
.+..|+|+..++.... .|..+...-...+.+.|++++|+++|+.+.+.+.+ + +...+.+-+ ..+. +..
T Consensus 92 lnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a---~l~ 160 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAA---ALQ 160 (652)
T ss_pred cccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHH---hhh
Confidence 8999999999984433 34446666677889999999999999999876522 2 222221111 1111 111
Q ss_pred HHHHHHHCCCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC------Ch-hhHHHHHHHHHhCC
Q 004791 330 FFNEMSARGCEPNVHTYT---VLIDCLCKENKVDEASELLNRMLEKG-------LFP------NV-VTYNALIDGYCKEG 392 (730)
Q Consensus 330 ~~~~m~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~g-------~~~------~~-~~~~~li~~~~~~g 392 (730)
. ..+......| ..+|. .....+...|++.+|+++++.....+ -.- .. .+-..|.-.+...|
T Consensus 161 ~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 161 V-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred H-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 1 0122222222 22333 34556678899999999999883221 000 00 12233556677889
Q ss_pred CHHHHHHHHHHHHhCCCCCChhc----HHHHHHHHHhcCCHH-HHHHHHHHHHHCCC----------CCChhhH-HHHHH
Q 004791 393 LMEAALQILDLMKSNNCSPNART----YNELICGFCKRKNVH-RAMSLLNELLEQNL----------SPTLITY-NSLIY 456 (730)
Q Consensus 393 ~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~~~~~-~A~~~~~~~~~~~~----------~~~~~~~-~~li~ 456 (730)
+.++|..++....+.+ .+|... -|.|+..-....-.+ .++..++....... ....+.. +.++.
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 344422 233332211111111 12222221111000 0001111 12222
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh
Q 004791 457 GQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLC--KRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKI 534 (730)
Q Consensus 457 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 534 (730)
.|. +..+.+.++...... ..|. ..+..++.... +.....++.+++...-+..+.-...+.-.++......|++
T Consensus 318 l~t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHh--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 222 233333333332221 1222 23333333222 2234667777777776665443455666677777888888
Q ss_pred hHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHHH
Q 004791 535 DDAHSLLE--------RMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM--GVKPTVY----TYTILIEEVLK 600 (730)
Q Consensus 535 ~~A~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~----~~~~l~~~~~~ 600 (730)
+.|++++. .+.+.+..|. +..++...+.+.++.+.|..++++.+.. .-.+... ++..+...-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 88888888 4544443343 4455666677777777777777766531 0011222 22333334456
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 601 EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKM 649 (730)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 649 (730)
.|+.++|..+++++.+.. .+|..+...++.+|++. +.+.|..+-+.+
T Consensus 471 ~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred cCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 788888888888888754 34777788888888776 567777665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-08 Score=99.79 Aligned_cols=222 Identities=15% Similarity=0.131 Sum_probs=121.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHh
Q 004791 206 FNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCE 285 (730)
Q Consensus 206 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 285 (730)
.-+=++.+.+.|++++|.+...+++..+ +.|...+..-+-++.+.++|++|+.+.+.-... ..+.+-+.--+-+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 3445667777888888888888888765 345566666666778888888888665543220 0111111122334456
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCCHHHHHH
Q 004791 286 AKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCL-CKENKVDEASE 364 (730)
Q Consensus 286 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~ 364 (730)
.++.|+|.+.++-... .+..+...-...+.+.|++++|+++|+.+.+.+.+ + +...+.+- ...+.--.+.
T Consensus 92 lnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~- 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ- 162 (652)
T ss_pred cccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH-
Confidence 7888888888772221 23446666677778888888888888888776433 2 22211111 0111111111
Q ss_pred HHHHHHHCCCCCChhhHHHH---HHHHHhCCCHHHHHHHHHHHHhCCC------CCC-hh-------cHHHHHHHHHhcC
Q 004791 365 LLNRMLEKGLFPNVVTYNAL---IDGYCKEGLMEAALQILDLMKSNNC------SPN-AR-------TYNELICGFCKRK 427 (730)
Q Consensus 365 ~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~------~~~-~~-------~~~~li~~~~~~~ 427 (730)
+.+.... .| ..+|..+ ...+...|++.+|+++++.....+. ..+ .. .-..|...+...|
T Consensus 163 ~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 163 LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 2222211 22 2233333 3445667888888888877732210 001 00 1122334455667
Q ss_pred CHHHHHHHHHHHHHCC
Q 004791 428 NVHRAMSLLNELLEQN 443 (730)
Q Consensus 428 ~~~~A~~~~~~~~~~~ 443 (730)
+..+|..++...+...
T Consensus 239 qt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN 254 (652)
T ss_pred chHHHHHHHHHHHHhc
Confidence 7777777777776654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-10 Score=107.90 Aligned_cols=200 Identities=17% Similarity=0.137 Sum_probs=139.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345555666677777777777777777665432 45666677777777777777777777777654 3455666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGV-KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
+...|++++|.+.++++.+... +.....+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 7777788888888777775321 223455666777778888888888888887775432 45667777778888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 642 AEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
|...+++..+.. +.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888888877752 34566666777777788888888887777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.5e-10 Score=121.00 Aligned_cols=217 Identities=10% Similarity=0.043 Sum_probs=132.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 004791 462 GHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLL 541 (730)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 541 (730)
+++++|...++++.+.+. -+...+..+...+...|++++|...++++.+.++. +...+..+...+...|++++|+..+
T Consensus 318 ~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 346777777777776542 25566666666777777777788777777776544 5566777777777788888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004791 542 ERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP 621 (730)
Q Consensus 542 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 621 (730)
++.++.+ +.+...+..++..+...|++++|...++++.+...+.+...+..+..++...|++++|...++++..... .
T Consensus 396 ~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~ 473 (553)
T PRK12370 396 NECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-T 473 (553)
T ss_pred HHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-h
Confidence 8777765 2222233334444556777788888877776543222445566677777778888888888777655321 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 622 DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
+....+.+...|...| +.|...++.+.+.. ..+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3334455555566666 46666666655421 11221222 23334455666666555 666543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.8e-10 Score=120.85 Aligned_cols=202 Identities=12% Similarity=0.008 Sum_probs=155.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLL 575 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 575 (730)
.+++++|...++++.+.++. +...+..+...+...|++++|...+++.++.+ +.+...+..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 35689999999999998765 77888899999999999999999999999986 55677888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 576 VEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIV 655 (730)
Q Consensus 576 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 655 (730)
++++.+.. +.+...+..++..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...++++... .
T Consensus 395 ~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~ 471 (553)
T PRK12370 395 INECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--E 471 (553)
T ss_pred HHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--c
Confidence 99999875 23333444455567778999999999999887542225556788888999999999999999998764 3
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 004791 656 PD-SVTYTLLICAYAHLGLIYSAFDVLKRMFD-AGCEPSHHTYAFLIKHLS 704 (730)
Q Consensus 656 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~l~ 704 (730)
|+ ....+.+...|...| ++|...++++.+ ..-.|....+..++..+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 520 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAH 520 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 44 455566666777777 588887887763 223444444445554443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.2e-10 Score=106.52 Aligned_cols=200 Identities=16% Similarity=0.112 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
....+..+...+...|++++|...+++.++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 45677888999999999999999999998865 4567788889999999999999999999999865 456778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIY 675 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 675 (730)
.+...|++++|.+.++++.+....+ ....+..+..++...|++++|...+++..+.. +.+...+..++..+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998753222 45567788899999999999999999999854 335778889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCChhhhhhhccchhh
Q 004791 676 SAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVDERKQQCDGILF 720 (730)
Q Consensus 676 ~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~~e~~~~~~~~l~ 720 (730)
+|..++++..+. ...+...+..+...+...|+.++++.....+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999876 34456667777777778888887776655443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-10 Score=106.21 Aligned_cols=235 Identities=14% Similarity=0.054 Sum_probs=185.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 004791 451 YNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCK 530 (730)
Q Consensus 451 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 530 (730)
-+.+...|.+.|.+.+|.+.++...+. .|-+.||..+-..|.+..+++.|+.++.+-.+.- +.++.....+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 356778888888888888888877765 4556677778888888888888888888888763 3355555666777788
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004791 531 EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRL 610 (730)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 610 (730)
.++.++|.++++..++.. +.++....++...|.-.++++-|+.+|+++++.|+ -+...|+.+.-+|...+++|-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 888899999998888875 56777777788888888899999999999999884 6788888888888888999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 611 LDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 611 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 688 (730)
|++....-..|+ ..+|..+.......|++..|.+-|+-....+ ..+...++.|.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~- 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV- 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh-
Confidence 988887544443 4568888888888899999999998888754 335778888888888889999999998887653
Q ss_pred CCCCH
Q 004791 689 CEPSH 693 (730)
Q Consensus 689 ~~p~~ 693 (730)
.|+.
T Consensus 459 -~P~m 462 (478)
T KOG1129|consen 459 -MPDM 462 (478)
T ss_pred -Cccc
Confidence 4543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-07 Score=90.64 Aligned_cols=185 Identities=10% Similarity=0.028 Sum_probs=91.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 495 KRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALL 574 (730)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 574 (730)
..++++.|+.+-++.++.+.. +...+-.-...+...|++++|.-.|+...... |-+..+|.-|+..|...|++.+|.-
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHH
Confidence 344555555555555544332 33333333444555555555555555554432 3344555555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 575 LVEKMTKMGVKPTVYTYTILI-EEVL-KEGDFDHAHRLLDQMVSLGLKPD-VYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 575 ~~~~m~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
+-+...+. ++.+..+...++ ..+. .-.--++|.+++++.+.. .|+ ....+.+...+...|+.++++.++++...
T Consensus 390 ~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 390 LANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 54444332 123333333332 1111 112234555555555543 332 22334445555556666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 652 EGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 652 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
..||....+.|+..+...+.+++|++.|...+.
T Consensus 467 --~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 467 --IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred --hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 245566666666666666666666666665554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-10 Score=106.09 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 004791 172 NTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRN 251 (730)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 251 (730)
+.+.++|.+.|.+.+|...|+..++. .|-+.||..|-++|.+..+...|+.++.+-++. ++-|+.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44555555666666666655555553 233344555555555555555555555555443 222333333344444444
Q ss_pred CChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004791 252 KDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFF 331 (730)
Q Consensus 252 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 331 (730)
++.++|.++++...+.. +.++.+...+...|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 45555555554444421 233334444444444444444444444444444422 3344444444444444444444444
Q ss_pred HHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 332 NEMSARGCEPN--VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 332 ~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
......--.|+ ..+|..+.......|++..|.+.|+-.+..+.. +...+|.|.-.-.+.|++++|..++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 44443222121 233444444444444444444444444433221 33344444444444444444444444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-07 Score=97.40 Aligned_cols=504 Identities=13% Similarity=0.091 Sum_probs=283.5
Q ss_pred hhhHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-C--------CCCCHHHHHHHHHH
Q 004791 142 DKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDN-M--------VVPNIYTFNTMING 212 (730)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~ll~~ 212 (730)
.|+...++..++.++ +-.+|..+.+.+.+.+++|-|.-.+..|... | -.++ .+-..+...
T Consensus 741 iG~MD~AfksI~~Ik----------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK----------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred eccHHHHHHHHHHHh----------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 455555666555443 4568999999999999988887777666432 1 1122 222223333
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHH
Q 004791 213 CCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEA 292 (730)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 292 (730)
....|..++|..+|.+-.+. ..|=..|-..|.+++|.++-+.-.+.. =..||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHH
Confidence 45678899999999887763 234456777899999999887544322 123666667777778888888
Q ss_pred HHHHHHH----------hhCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004791 293 LDLFRRM----------GEDD---------CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCL 353 (730)
Q Consensus 293 ~~~~~~m----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 353 (730)
++.|++. ...+ -..|...|.--...+-..|+.+.|+.+|..... |..++...
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 8888752 2221 012334455555556667888888888876543 56777788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHh--------
Q 004791 354 CKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCK-------- 425 (730)
Q Consensus 354 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------- 425 (730)
|-+|+.++|-++-++-. |......|.+.|-..|++.+|..+|.+... +...|+.+-.
T Consensus 949 C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred eeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHH
Confidence 88888888888776532 556666788899999999999998876542 2222222211
Q ss_pred -------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHH--------HH--hCCCCCCHHhHHH
Q 004791 426 -------RKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHL--------IN--ESGLVPDQFTYSV 488 (730)
Q Consensus 426 -------~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------~~--~~~~~~~~~~~~~ 488 (730)
..+.-.|.+.|++.- ..+..-+..|.+.|.+.+|+++.-+ ++ +.....|+...+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 112223333443321 0122234457777777777765321 11 1233446666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----------cC----------------CCcCH----HHHHHHHHHHHhcCChhHHH
Q 004791 489 FIDTLCKRGRVEEAQVLFDSLEK----------KG----------------IKAGE----VIYTALIDGYCKEGKIDDAH 538 (730)
Q Consensus 489 li~~~~~~g~~~~A~~~~~~~~~----------~~----------------~~~~~----~~~~~li~~~~~~g~~~~A~ 538 (730)
-.+.++...++++|..++....+ ++ -.|+. .+...+...|.++|.+..|-
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 77777777777777666543321 11 11222 24455667778888887776
Q ss_pred HHHHHH----------HhCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 539 SLLERM----------LSDDCLP----------NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEV 598 (730)
Q Consensus 539 ~~~~~~----------~~~~~~p----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 598 (730)
+-|.+. ++.|-.. +...| +|..-|.+.-++..--++++.+... -.....+..|...|
T Consensus 1166 KKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiY-ImAANyLQtlDWq~~pq~mK~I~tF--YTKgqafd~LanFY 1242 (1416)
T KOG3617|consen 1166 KKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIY-IMAANYLQTLDWQDNPQTMKDIETF--YTKGQAFDHLANFY 1242 (1416)
T ss_pred HHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceee-eehhhhhhhcccccChHHHhhhHhh--hhcchhHHHHHHHH
Confidence 555432 1111000 00000 1111122222222222222222110 01111222232222
Q ss_pred H---------------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHC
Q 004791 599 L---------------KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS-----------IGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 599 ~---------------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~m~~~ 652 (730)
. ..|-+++|.+.+.++..++. ....++.|-.-..+ ..+..+.++-...|.++
T Consensus 1243 ~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~llee 1320 (1416)
T KOG3617|consen 1243 KSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEE 1320 (1416)
T ss_pred HHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhC
Confidence 1 13445566666666654431 22233333222111 12555666666667765
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHc
Q 004791 653 GIVPD----SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA--FLIKHLSN 705 (730)
Q Consensus 653 g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~l~~ 705 (730)
.+.|| ...|..|+..+....++..|.+.+++|..+-...|..+|. ..++..+.
T Consensus 1321 p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~~v~~s~vdkv~~ 1379 (1416)
T KOG3617|consen 1321 PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLSTFVETSTVDKVCD 1379 (1416)
T ss_pred cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhccccHHHHHHHHH
Confidence 44443 4678899999999999999999999998775455554443 44444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-07 Score=88.02 Aligned_cols=288 Identities=16% Similarity=0.110 Sum_probs=187.0
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-hhcHHHHHHHHHhcCCHHHHH
Q 004791 356 ENKVDEASELLNRMLEK-GLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPN-ARTYNELICGFCKRKNVHRAM 433 (730)
Q Consensus 356 ~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~ 433 (730)
.++...|...+-.+... -++-|+.....+.+.+...|+.++|...|++....+ |+ ..........+...|+.++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444444443333322 234466677777777777888888877777766542 22 222233334445667777776
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 434 SLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKG 513 (730)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 513 (730)
.+...+.... .-....|..-+.......+++.|+.+-++.++.... +...+-.-...+...|+.++|.-.|+......
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 6666665431 112333444444455566777777777776664321 33344444456677888888888888877664
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 004791 514 IKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALI-DGLY-RERKVQEALLLVEKMTKMGVKPT-VYT 590 (730)
Q Consensus 514 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~~~~~~A~~~~~~m~~~~~~~~-~~~ 590 (730)
+. +..+|..|+..|...|++.+|.-+-+...+. ++.+..++..+. ..+. ....-++|.+++++.++.. |+ ...
T Consensus 365 p~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~A 440 (564)
T KOG1174|consen 365 PY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPA 440 (564)
T ss_pred hh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHH
Confidence 32 6778888888888888888888777765553 234555555442 2232 2334578888888887653 44 455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
.+.+...+...|..++++.++++.+.. .||....+.|.+.+.....+++|.+.|......+
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 667778888899999999999888874 5788888899999998999999999998888743
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-08 Score=105.14 Aligned_cols=306 Identities=19% Similarity=0.198 Sum_probs=144.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----
Q 004791 281 HGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKE---- 356 (730)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 356 (730)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..++++++. |..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 3445666666666666553332 2223334445566666666666666666666666543 444444444444222
Q ss_pred -CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHH-HHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHH
Q 004791 357 -NKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLME-AALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMS 434 (730)
Q Consensus 357 -g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 434 (730)
...+...++|+++.+.- |.......+.-.+.....+. .+..++..+...|++ .+++.|-..|....+..-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 13445555555554432 22222211211111111221 233334444444422 233344333433333333333
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 435 LLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQ--FTYSVFIDTLCKRGRVEEAQVLFDSLEKK 512 (730)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 512 (730)
++.......- ..+.+.... ....-.|.. .++..+...|...|++++|++++++.+++
T Consensus 165 l~~~~~~~l~---------------~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 165 LVEEYVNSLE---------------SNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred HHHHHHHhhc---------------ccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3333221100 000000000 000012222 23344455566666677777777666666
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---
Q 004791 513 GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVY--- 589 (730)
Q Consensus 513 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--- 589 (730)
.+. .+..|..-...|-+.|++.+|.+.++.....+ .-|...-+-.+..+.+.|+.++|.+++....+.+..|-..
T Consensus 224 tPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 224 TPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 433 35566666666666777777777666666655 3455555555666666677777776666666544322111
Q ss_pred ---HH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 590 ---TY--TILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 590 ---~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
.| .-.+.+|.+.|++..|++.|..+.+
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 2235566667777666666555543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.3e-09 Score=108.39 Aligned_cols=237 Identities=23% Similarity=0.223 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhC-----CC-CCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-
Q 004791 449 ITYNSLIYGQCREGHLDSAYKVLHLINES-----GL-VPDQF-TYSVFIDTLCKRGRVEEAQVLFDSLEKK-----GIK- 515 (730)
Q Consensus 449 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~- 515 (730)
.+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... |..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666666677777776666655442 11 12222 2233566777888888888888877643 211
Q ss_pred -cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC
Q 004791 516 -AGEVIYTALIDGYCKEGKIDDAHSLLERMLSD-----D-CLPNSY-TYNALIDGLYRERKVQEALLLVEKMTKM---GV 584 (730)
Q Consensus 516 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~ 584 (730)
--..+++.|..+|++.|++++|...+++..+. + ..|.+. .++.+...+...+++++|..++....+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 12346677777888889988888877776542 1 123332 3566677778889999999998876641 11
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 004791 585 KPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GL--KP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNR-- 651 (730)
Q Consensus 585 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-- 651 (730)
.++ ..+++.|...|...|++++|.++++++++. +. .+ ....++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467889999999999999999999998863 11 11 245678888899999999999999888653
Q ss_pred --CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 652 --EGI-VPD-SVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 652 --~g~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
-|. .|+ ..+|..|+..|...|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 231 122 5678899999999999999999988775
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-07 Score=97.70 Aligned_cols=249 Identities=12% Similarity=0.057 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 430 HRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSL 509 (730)
Q Consensus 430 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 509 (730)
..|+..+.+.++.. ..+..+|+.|.-. ...|++.-+...|-+-.... +....+|..+...+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 35666677666542 3366777777655 55567777766665544432 335667777777778888999999999888
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH--h--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----
Q 004791 510 EKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERML--S--DDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK---- 581 (730)
Q Consensus 510 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---- 581 (730)
....+. +...|-.........|+.-++..+|..-- . .|--++..-|-........+|+.++-+...+++..
T Consensus 877 qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 877544 56666655555566788888888877622 1 22234433333333334456665554443333221
Q ss_pred -----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 582 -----MGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL-GLKPDVYTYT----AFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 582 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.+.+.+...|...+...-+.+.+..|.+...+++.. ..+-|...|+ .+.+.++..|.++.|..-+.....
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 233556777888888888888888887777766531 0112333444 344455666777755544433221
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 652 EGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 652 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
..|......-+.. .-.|+++++.+.|++...
T Consensus 1036 ---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs 1066 (1238)
T KOG1127|consen 1036 ---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALS 1066 (1238)
T ss_pred ---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh
Confidence 1122222222222 335788888888888864
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-08 Score=105.08 Aligned_cols=293 Identities=19% Similarity=0.191 Sum_probs=155.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhc--
Q 004791 349 LIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKR-- 426 (730)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-- 426 (730)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ +.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345556677777777777664443 22234445556666777777777777777777664 33333334444443111
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChh-HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 004791 427 ---KNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLD-SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEA 502 (730)
Q Consensus 427 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 502 (730)
...+....+++++...- |.......+.-.+.....+. .+..++..+..+|++
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---------------------- 143 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---------------------- 143 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc----------------------
Confidence 23455555555554432 22222211111111111121 222333344444432
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------------CCCCCHH--HHHHHHHHHHhc
Q 004791 503 QVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSD--------------DCLPNSY--TYNALIDGLYRE 566 (730)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------~~~p~~~--~~~~li~~~~~~ 566 (730)
.++..+-..|....+.+-...++...... .-+|... ++..+...|-..
T Consensus 144 ----------------slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 144 ----------------SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred ----------------hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 13333333333333322233333322211 1123332 334555666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 646 (730)
|++++|+++.++.+++. +..+..|..-...+-+.|++++|.+.++.+.+.+.. |...-+-.+..+.+.|++++|.+++
T Consensus 208 g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777777764 333666777777777777777777777777776544 6666666666677777777777777
Q ss_pred HHHHHCCCCCC--H----HHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 647 VKMNREGIVPD--S----VTY--TLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 647 ~~m~~~g~~~~--~----~~~--~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
....+.+..|- . -.| .-.+.+|.+.|++..|++.|..+.
T Consensus 286 ~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 286 SLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77766554331 1 122 234566777777777777665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-09 Score=109.36 Aligned_cols=197 Identities=20% Similarity=0.191 Sum_probs=126.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhC-----CC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-cC-HH
Q 004791 454 LIYGQCREGHLDSAYKVLHLINES-----GL--VPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK-----GIK-AG-EV 519 (730)
Q Consensus 454 li~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~-~~ 519 (730)
+...|...+++++|..+|+++... |. +.-..+++.|...|.+.|++++|...++.+.+. +.. +. ..
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 445555555666665555554431 11 111234555555666666666666666554431 111 11 12
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CC
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSD---DCLPN----SYTYNALIDGLYRERKVQEALLLVEKMTKM-----G--VK 585 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~--~~ 585 (730)
.++.+...++..+++++|..++++..+. -..++ ..+++.|...|.+.|++++|.+++++++.. | ..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 3455666777788888888887765542 11122 347888888999999999999999888742 1 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 586 PTVYTYTILIEEVLKEGDFDHAHRLLDQMVS----LGLK-P-DVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 586 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
-....++.+...|.+.+.+++|.++|.+... .|+. | ...+|..|+..|...|++++|.++.+...
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2245677888888889998888888877654 2222 2 35578999999999999999999988876
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.3e-06 Score=87.05 Aligned_cols=487 Identities=11% Similarity=0.117 Sum_probs=238.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFN----TMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLIL 246 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 246 (730)
+-.+...|.++|.+..|++.|.+..+. ...++.-+ --+..|...-.++++.+.+..|...++..+..+.-.+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 667788889999999999888776542 11111100 112344455678889999999988887777777666666
Q ss_pred HHHhcCChhHHHHHHHhchhC-----------CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHH------------hhCC
Q 004791 247 GYCRNKDVEKGFRVFMMMPKK-----------GCRRNEVSYTNLIHGLCEAKRVDEALDLFRRM------------GEDD 303 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~~~ 303 (730)
-|+..=-.+.-+++|+..... ++..|+...-..|.+.|+.|++.+..++.++- ++..
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 676665666677777766541 24567777778899999999998888876541 1111
Q ss_pred ---CCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------HHCCCCCC-----------hhhHHHHHH
Q 004791 304 ---CRP-----TVRTYTVVIFGLCRVGRKSEALEFFNEM-------------SARGCEPN-----------VHTYTVLID 351 (730)
Q Consensus 304 ---~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------------~~~~~~~~-----------~~~~~~li~ 351 (730)
--| |..-+..=+-.|.-.++..+-+++|-+- +...+..+ ......|..
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 001 1111111111222222333333333221 11111100 001112223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH----HHHHHH-----HhCCCCC-----------
Q 004791 352 CLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAAL----QILDLM-----KSNNCSP----------- 411 (730)
Q Consensus 352 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m-----~~~~~~~----------- 411 (730)
-.-+.+++..-...++..+..|.. |..++|+|.+.|...++-.+-. .+|+.. -++. .|
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKR-DP~lA~vaYerGq 924 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKR-DPHLACVAYERGQ 924 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhccc-CCceEEEeecccC
Confidence 333455555556667777777876 8889999999998776544321 111111 1110 01
Q ss_pred -Ch---------hcHHHHHHHHHhcCCHHHHH-----------HHHHHHHHCCC--CCChhhHHHHHHHHHhCCChhHHH
Q 004791 412 -NA---------RTYNELICGFCKRKNVHRAM-----------SLLNELLEQNL--SPTLITYNSLIYGQCREGHLDSAY 468 (730)
Q Consensus 412 -~~---------~~~~~li~~~~~~~~~~~A~-----------~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~ 468 (730)
|. ..|....+-+.+..+.+-=. .+.++....++ ..|+.....-+.++...+-..+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 00 01111222222222221111 12222222221 123344444556666666666666
Q ss_pred HHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004791 469 KVLHLINESG--LVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLS 546 (730)
Q Consensus 469 ~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 546 (730)
++++.+.-.. +..+...-+.++-...+ .+..+..++.+++-.-+.+ .+.......+-+++|..+|++.-.
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~-------~ia~iai~~~LyEEAF~ifkkf~~ 1076 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP-------DIAEIAIENQLYEEAFAIFKKFDM 1076 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch-------hHHHHHhhhhHHHHHHHHHHHhcc
Confidence 6666654321 11111112222211111 1222223333332221100 011122223334444444443211
Q ss_pred CC---------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004791 547 DD---------------------CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFD 605 (730)
Q Consensus 547 ~~---------------------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 605 (730)
.. -...+..|..+..+-.+.|...+|++-|-+ ..|+..|..+++...+.|.++
T Consensus 1077 n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1077 NVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHH
Confidence 00 012334566666666666666666554422 234556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
+-.+++..+.+..-.|.. =..|+-+|++.++..+-.+++ ..||......+++-|...|.++.|.-+|...
T Consensus 1151 dLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 666666655554433333 235566666666655543332 1356666666666666666666665555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.2e-06 Score=87.97 Aligned_cols=521 Identities=16% Similarity=0.169 Sum_probs=294.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcC--------CccccccCHHhHH-
Q 004791 102 KPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESG--------SEFSLKLSVKGYN- 172 (730)
Q Consensus 102 ~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~- 172 (730)
--+|..|+.+..-.|++.++.|.+.+.+++.+.- .| -+...+-.++.+.+-.. .++++.++.+.|-
T Consensus 717 ivn~seDpevh~KYIqAA~kt~QikEvERicres--n~---YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLy 791 (1666)
T KOG0985|consen 717 IVNFSEDPEVHFKYIQAACKTGQIKEVERICRES--NC---YDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLY 791 (1666)
T ss_pred HhccccCchHHHHHHHHHHhhccHHHHHHHHhcc--cc---CCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHH
Confidence 3357778888888999999999999988775431 11 12233333444333211 1234444444332
Q ss_pred -----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004791 173 -----TLLMQLSKFHLVDEMKRVYLEMLDNMVVPN-----------IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSP 236 (730)
Q Consensus 173 -----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~ 236 (730)
..|..|++.=.+...-.+...+++..+.-+ .+.-.-++.-.-+.++..--..+++..++.|..
T Consensus 792 rnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~- 870 (1666)
T KOG0985|consen 792 RNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ- 870 (1666)
T ss_pred HhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-
Confidence 233444443333333333333333221111 111222344444566677777788888888864
Q ss_pred CHHhHHHHHHHHHhcCChhHH-HH---HHH-----hc-hh-----------CCCC--------cChhhHHHHHHHHHhcC
Q 004791 237 DTFTYTSLILGYCRNKDVEKG-FR---VFM-----MM-PK-----------KGCR--------RNEVSYTNLIHGLCEAK 287 (730)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A-~~---~~~-----~m-~~-----------~~~~--------~~~~~~~~li~~~~~~g 287 (730)
|+.++|+|...|...++-.+- ++ .++ +- .+ +|.. .....|....+-+.+..
T Consensus 871 d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~ 950 (1666)
T KOG0985|consen 871 DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERS 950 (1666)
T ss_pred chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhcc
Confidence 888899988888765443221 10 000 00 00 0100 00011222333333333
Q ss_pred CHHHHH-----------HHHHHHhhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHH
Q 004791 288 RVDEAL-----------DLFRRMGEDDCR--PTVRTYTVVIFGLCRVGRKSEALEFFNEMSARG--CEPNVHTYTVLIDC 352 (730)
Q Consensus 288 ~~~~A~-----------~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~ 352 (730)
+.+-=. ++.++....+++ .|...-...+.++...+-..+-+++++++.-.+ +.-+...-+.|+-.
T Consensus 951 D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt 1030 (1666)
T KOG0985|consen 951 DPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT 1030 (1666)
T ss_pred ChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH
Confidence 332211 222333322211 133334444556666666666666666655321 11122223333333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHH
Q 004791 353 LCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRA 432 (730)
Q Consensus 353 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 432 (730)
..+..+ ....+..+++-.- ---.+......++-+++|..+|++.. .+....+.|+.- -+.+++|
T Consensus 1031 Aikad~-trVm~YI~rLdny-------Da~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA 1094 (1666)
T KOG0985|consen 1031 AIKADR-TRVMEYINRLDNY-------DAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRA 1094 (1666)
T ss_pred HhhcCh-HHHHHHHHHhccC-------CchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHH
Confidence 333322 3333333333221 11123445556677777877777543 244444555443 3566667
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 433 MSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK 512 (730)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 512 (730)
.+.-++.. .+..|..+..+-.+.|.+.+|++-|-+. .|+..|..+++...+.|.+++-.+++....++
T Consensus 1095 ~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1095 YEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66655442 4567889999999999999988877443 26678889999999999999999888887776
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004791 513 GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYT 592 (730)
Q Consensus 513 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 592 (730)
.-.|. +=+.|+-+|++.+++.+-.+++ . -||......+.+-|...+.++.|.-+|... ..|.
T Consensus 1163 ~~E~~--id~eLi~AyAkt~rl~elE~fi-----~--gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a 1224 (1666)
T KOG0985|consen 1163 VREPY--IDSELIFAYAKTNRLTELEEFI-----A--GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFA 1224 (1666)
T ss_pred hcCcc--chHHHHHHHHHhchHHHHHHHh-----c--CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHH
Confidence 55443 4467888999999888766554 2 378888888888888889998888887543 3466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 672 (730)
.|...+...|+++.|...-+++- +..+|--...+|...+.+.-| +|-..++.....-..-|+.-|-..|
T Consensus 1225 ~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1225 KLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcC
Confidence 77778888888888877666542 456777777777665554433 2333333344555666777777777
Q ss_pred CHHHHHHHHHHHH
Q 004791 673 LIYSAFDVLKRMF 685 (730)
Q Consensus 673 ~~~~A~~~~~~m~ 685 (730)
.++|-+.+++..+
T Consensus 1294 yFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1294 YFEELISLLEAGL 1306 (1666)
T ss_pred cHHHHHHHHHhhh
Confidence 7777777666543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.7e-08 Score=95.10 Aligned_cols=415 Identities=17% Similarity=0.135 Sum_probs=248.4
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCC
Q 004791 245 ILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPT-VRTYTVVIFGLCRVGR 323 (730)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~ 323 (730)
..+.+..|+++.|+..|-+.+... ++|-+.|..-..+|.+.|++++|++=-.+-++. .|+ ...|.-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 355677889999999888877654 347788888888889999998888776666654 355 3577788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-----HHHHhCCCHHHHH
Q 004791 324 KSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALI-----DGYCKEGLMEAAL 398 (730)
Q Consensus 324 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~ 398 (730)
+++|+.-|.+-++.... |...++.+..++ ..+.+. +.. ..++..|..+. +.+.....+..-+
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 99999888888776443 566667666666 111111 110 11222222221 1111111111111
Q ss_pred HHHHHHHhCCCCCChhcH---HHHHHHHHhcCCHHHH-HHHHHHHH-HCCCCC----------------------ChhhH
Q 004791 399 QILDLMKSNNCSPNARTY---NELICGFCKRKNVHRA-MSLLNELL-EQNLSP----------------------TLITY 451 (730)
Q Consensus 399 ~~~~~m~~~~~~~~~~~~---~~li~~~~~~~~~~~A-~~~~~~~~-~~~~~~----------------------~~~~~ 451 (730)
+.+ ... +-+...| ..++.+.......+.- ...-..+. ..+..| -..-.
T Consensus 153 ~~~---~~~--p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 153 EII---QKN--PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHh---hcC--cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 111 110 0000000 0111111100000000 00000000 000000 11224
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHH-------HHH
Q 004791 452 NSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIY-------TAL 524 (730)
Q Consensus 452 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~l 524 (730)
..+++...+..+++.|.+.+....+.. -+..-++....+|...|.+.++........+.|.. ...-| ..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 457777778888889999888887764 35555667777888888888887777776666532 12222 224
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCC
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTV-YTYTILIEEVLKEGD 603 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~ 603 (730)
..+|.+.++++.|+..|.+.+.....|+.. .+....+++.+..+...-.+ |.. .-...-+..+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccC
Confidence 456777788889999998877654333321 23344455555554444332 322 222233667788899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 604 FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKR 683 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (730)
+..|+..|.+++...+. |...|....-+|.+.|.+..|++-.+...+.+ ++....|..-+.++....++++|.+.|++
T Consensus 374 y~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987643 78889999999999999999999888888853 23466677777777888889999999998
Q ss_pred HHHcCCCCCHHHHHH
Q 004791 684 MFDAGCEPSHHTYAF 698 (730)
Q Consensus 684 m~~~g~~p~~~~~~~ 698 (730)
.++. .|+..-+..
T Consensus 452 ale~--dp~~~e~~~ 464 (539)
T KOG0548|consen 452 ALEL--DPSNAEAID 464 (539)
T ss_pred HHhc--CchhHHHHH
Confidence 8875 465544443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-11 Score=82.95 Aligned_cols=49 Identities=41% Similarity=0.822 Sum_probs=22.1
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 004791 271 RNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLC 319 (730)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 319 (730)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-07 Score=96.73 Aligned_cols=515 Identities=11% Similarity=0.006 Sum_probs=294.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004791 182 HLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVF 261 (730)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 261 (730)
.+...|+..|-+.++..+. =...|..|...|+..-+...|.+.|.++-+.+. -|...+....+.|.+..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3477788888777775321 234788889999888888999999999987642 36777888899999999999998884
Q ss_pred HhchhCCC-CcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 262 MMMPKKGC-RRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE 340 (730)
Q Consensus 262 ~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 340 (730)
-..-+... ..-...|--..-.|.+.++..+|..-|+.....+ +-|...|..++.+|...|++..|+++|.+.....+.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 33222110 0111233344556778889999999999988776 557889999999999999999999999888776433
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh-------C
Q 004791 341 PNVHTYTVLIDCLCKENKVDEASELLNRMLEK------GLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS-------N 407 (730)
Q Consensus 341 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~ 407 (730)
+...-.-..-..+..|++.+|...++.++.. +..--..++..+...+.-.|-..+|..++++-++ .
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2222233344567789999999998887653 1111223333334444444555555555554432 1
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCh---h---HHHHHHHHHHhCCCCC
Q 004791 408 NCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHL---D---SAYKVLHLINESGLVP 481 (730)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~a~~~~~~~~~~~~~~ 481 (730)
....+...|..+.++ ..+|-... .+ .|+......+..-....+.. | -+.+.+-.-.. ...
T Consensus 708 ~~~~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~ 773 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAI 773 (1238)
T ss_pred hhhhhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhh
Confidence 111222333322222 22222221 00 11111111111111112211 1 01111111111 111
Q ss_pred CHHhHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 004791 482 DQFTYSVFIDTLCK----R----GRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS 553 (730)
Q Consensus 482 ~~~~~~~li~~~~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 553 (730)
+..+|..++..|.+ . .+...|...+...++..-. +...|+.|.-. ...|++.-|...|-+-.... +.+.
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccch
Confidence 23334434333322 1 2334667777776665333 66677777655 55567777766666655543 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS----LGLKPDVYTYTAF 629 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~l 629 (730)
.+|..+...+.+..+++-|...|...+... +.|...|..........|+.-++..+|..--+ .|-.++...|..-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 777777777788888888888888777654 44556665555555567777777777766222 2223444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCCHHHHH
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNR---------EGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF---DAGCEPSHHTYA 697 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~---------~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~~~~ 697 (730)
.......|+.++-+...+++.. .+.+.+...|.+.+...-+.+.+++|.+...+.. +. +-|...|+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~--k~d~sqyn 1007 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLEL--KLDESQYN 1007 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhh
Confidence 4444556666555444433321 1333356777777777777787888777776654 22 33344455
Q ss_pred HHH----HHHHcCChhhhhhhccchhh
Q 004791 698 FLI----KHLSNKKVDERKQQCDGILF 720 (730)
Q Consensus 698 ~l~----~~l~~~~~~e~~~~~~~~l~ 720 (730)
.+. +.++..|..|.+++....++
T Consensus 1008 vak~~~gRL~lslgefe~A~~a~~~~~ 1034 (1238)
T KOG1127|consen 1008 VAKPDAGRLELSLGEFESAKKASWKEW 1034 (1238)
T ss_pred hhhhhhhhhhhhhcchhhHhhhhcccc
Confidence 332 22344566666665555444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-08 Score=87.30 Aligned_cols=207 Identities=17% Similarity=0.066 Sum_probs=149.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004791 486 YSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR 565 (730)
Q Consensus 486 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 565 (730)
...+.-.|...|+...|..-+++.++.++. +..+|..+...|-+.|..+.|.+.|++.++.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 344555677788888888888888877654 66677777788888888888888888887765 5566777778888888
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 566 ERKVQEALLLVEKMTKMG-VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAED 644 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 644 (730)
.|++++|...|++....- ..--..+|..++-+..+.|+.+.|.+.|++.++.... ...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 888888888888777531 1123456777777778888888888888888876543 44466677777788888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004791 645 LIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAF 698 (730)
Q Consensus 645 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 698 (730)
+++.....+ .++.......|..-...|+.+.+.++=..+... -|...-|-.
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 888887765 477777777777777788887777766665542 455544443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-08 Score=97.93 Aligned_cols=234 Identities=15% Similarity=0.031 Sum_probs=145.1
Q ss_pred CChhHHHHHHHHHHhCCC-CCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHH
Q 004791 462 GHLDSAYKVLHLINESGL-VPD--QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAH 538 (730)
Q Consensus 462 g~~~~a~~~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 538 (730)
+..+.++.-+.+++.... .|+ ...|..+...+...|+.++|...|++..+..+. +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 344555555655554321 111 344556666777778888888888887777554 6677888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004791 539 SLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG 618 (730)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 618 (730)
..|++.++.. +.+..+|..+...+...|++++|.+.+++..+.. |+..........+...++.++|.+.|++.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888887765 4456677777777778888888888888887754 332211222223345677888888886655432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004791 619 LKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE---G--IVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPS 692 (730)
Q Consensus 619 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 692 (730)
.|+...+ .......|+..++ +.++.+.+. . +.| ....|..++..+.+.|++++|+..|++..+.+ .||
T Consensus 196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred -CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 2232221 2223335555444 344444421 1 111 24578888888888899999999998888643 446
Q ss_pred HHHHHHHHHHHHc
Q 004791 693 HHTYAFLIKHLSN 705 (730)
Q Consensus 693 ~~~~~~l~~~l~~ 705 (730)
.+-++..+--+.+
T Consensus 270 ~~e~~~~~~e~~~ 282 (296)
T PRK11189 270 FVEHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 6666654444433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-06 Score=89.22 Aligned_cols=224 Identities=20% Similarity=0.222 Sum_probs=118.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 004791 420 ICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRV 499 (730)
Q Consensus 420 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 499 (730)
+.+......+.+|+.+++.+..+.. ....|-.+.+.|...|+++.|.++|.+.- .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3344455666666666666655421 22334555566666666666666664321 233455666666777
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 500 EEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKM 579 (730)
Q Consensus 500 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 579 (730)
+.|.++-++.. |+......|-+-..-+-+.|++.+|.+++-.+- .|+ ..|.+|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 66666655443 333344455555555566666666666653332 233 2345666666666666665543
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 580 TKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 580 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 659 (730)
.- ..-..|...+..-+...|++..|.+-|-+.- -|.+-+++|...+.|++|.++.+. .| -.|..
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt---eg-g~n~~ 940 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT---EG-GANAE 940 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc---cc-cccHH
Confidence 21 1112344445556666677777766654432 244555666666667766655432 22 23333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKR 683 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~ 683 (730)
-....+++-.--| +.|.+++.+
T Consensus 941 k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 941 KHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHHHHHHhhCc--HHHHHHHHh
Confidence 3334444444334 455555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=80.06 Aligned_cols=50 Identities=38% Similarity=0.616 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004791 656 PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSN 705 (730)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~ 705 (730)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.+++++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.6e-08 Score=85.85 Aligned_cols=208 Identities=17% Similarity=0.118 Sum_probs=164.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 004791 450 TYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYC 529 (730)
Q Consensus 450 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 529 (730)
+...|.-.|.+.|+...|.+-+++.++... .+..++..+...|.+.|+.+.|.+.|++..+..+. +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 345567788888888888888888888653 35677888888888899999999999988887665 6678888888899
Q ss_pred hcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004791 530 KEGKIDDAHSLLERMLSDDC-LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAH 608 (730)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 608 (730)
..|++++|...|++.+..-. ..-..+|..+.-+..+.|+.+.|.+.|++.++.. +....+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999998887521 2234577778777788999999999999988865 445667778888888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004791 609 RLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTL 663 (730)
Q Consensus 609 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 663 (730)
.+++.....+. ++.......|..-...|+.+.|.++=.++.+. .|...-|..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 99998887765 68888888888888889988888887777763 465555443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-07 Score=90.78 Aligned_cols=418 Identities=14% Similarity=0.081 Sum_probs=256.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcC-hhhHHHHHHHHHhcCC
Q 004791 210 INGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRN-EVSYTNLIHGLCEAKR 288 (730)
Q Consensus 210 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~ 288 (730)
.++.+..|+++.|...|.+.+...+. +.+.|+.-..+|.+.|++++|++=-.+-.+. .|+ ...|+-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 46777899999999999999987654 7788888899999999999998876666553 254 4679999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHH
Q 004791 289 VDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENK-VDEASELLN 367 (730)
Q Consensus 289 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 367 (730)
+++|+.-|.+-.+.. +.+...++.+..++... . .+.+.|. ++..|..+..--...+- .+.+.....
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-Hhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 999999999988875 44666777777776111 1 1111111 12222221111100000 011111111
Q ss_pred HHHHCCC-----CC-ChhhHHHHHHH-------HHhCC--------CHH----HHHHHHHHHHh-CCCCCChhcHHHHHH
Q 004791 368 RMLEKGL-----FP-NVVTYNALIDG-------YCKEG--------LME----AALQILDLMKS-NNCSPNARTYNELIC 421 (730)
Q Consensus 368 ~~~~~g~-----~~-~~~~~~~li~~-------~~~~g--------~~~----~A~~~~~~m~~-~~~~~~~~~~~~li~ 421 (730)
+.+..+. .. |.....++... ....| ... .......++.+ .....-..-...+.+
T Consensus 153 ~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 1111110 00 00000000000 00000 000 00000000000 000001122456777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhH-------HHHHHHHH
Q 004791 422 GFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTY-------SVFIDTLC 494 (730)
Q Consensus 422 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~ 494 (730)
+..+..++..|++.+...++.. .+...++....+|...|.+.+.........+.|.. ...-+ ..+..+|.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhh
Confidence 7788888999999999888864 46666777788888889888888777776666532 11122 22334666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 004791 495 KRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS-YTYNALIDGLYRERKVQEAL 573 (730)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~ 573 (730)
+.++++.++..|.+.......|+. ..+....+++....+...-.+ |.. .-...-...+.+.|++..|+
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHH
Confidence 778889999999887765443322 223344455555554443333 322 11222356677899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 574 LLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 574 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
+.|.++++.. +.|...|....-+|.+.|.+..|+.-.+..++.++ +....|..-+.++....+++.|.+.|++..+.+
T Consensus 379 ~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 379 KHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999876 67889999999999999999999999888888642 245566666777777888999999999998854
Q ss_pred CCCCHHHH
Q 004791 654 IVPDSVTY 661 (730)
Q Consensus 654 ~~~~~~~~ 661 (730)
|+..-+
T Consensus 457 --p~~~e~ 462 (539)
T KOG0548|consen 457 --PSNAEA 462 (539)
T ss_pred --chhHHH
Confidence 654333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.8e-08 Score=96.23 Aligned_cols=119 Identities=14% Similarity=-0.069 Sum_probs=52.4
Q ss_pred CChhHHHHHHHHHHHCCC-CC--CHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHH
Q 004791 217 GNVGEAELYVSKIVQAGL-SP--DTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEAL 293 (730)
Q Consensus 217 g~~~~A~~~~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 293 (730)
+..+.++.-+.+++.... .| ....|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 444555555555553211 11 12234444444444455555555554444422 223444444444444455555555
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 294 DLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSAR 337 (730)
Q Consensus 294 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (730)
+.|++..+.+ +.+..+|..+...+...|++++|++.|+...+.
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4444444432 122334444444444444444444444444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-06 Score=87.70 Aligned_cols=361 Identities=13% Similarity=0.091 Sum_probs=220.6
Q ss_pred CHHhHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-C--------CC
Q 004791 167 SVKGYNTLLM--QLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQA-G--------LS 235 (730)
Q Consensus 167 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g--------~~ 235 (730)
|..+-..++. .|..-|+.|.|.+..+-+. +...|..+.++|.+..+.+-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3445555553 4677899999988876554 4568999999999999999998777766421 1 01
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 004791 236 PDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVI 315 (730)
Q Consensus 236 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 315 (730)
++ ..-....-.-...|.+++|..++++-.+ |..|=..|-..|.+++|+++-+.--... -..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 21 1112223334567899999999988766 3444556677899999999876532211 234677777
Q ss_pred HHHHhcCCHHHHHHHHHHH----------HHCCC---------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004791 316 FGLCRVGRKSEALEFFNEM----------SARGC---------EPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFP 376 (730)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m----------~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 376 (730)
.-+...++.+.|++.|++. +...+ ..|...|.-....+-..|+++.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 7777888899998888753 22111 12334444455555567777777777766543
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 377 NVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIY 456 (730)
Q Consensus 377 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 456 (730)
|-++++..|-.|+.++|-++-++- .|......|.+.|-..|++.+|...|.++.. +..-|+
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR 1001 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR 1001 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH
Confidence 455777777788888887776542 2666777788888888888888888876543 222233
Q ss_pred HHHhCC---------------ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH--------HH--H
Q 004791 457 GQCREG---------------HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDS--------LE--K 511 (730)
Q Consensus 457 ~~~~~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~--~ 511 (730)
.|-..+ +.-.|..+|++. |.. ....+..|-+.|.+.+|+++--+ ++ +
T Consensus 1002 lcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1002 LCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 222211 222223333321 111 11233456777777777665321 12 2
Q ss_pred cCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----------CCC----------------CCC----HHHHHHHHH
Q 004791 512 KGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLS----------DDC----------------LPN----SYTYNALID 561 (730)
Q Consensus 512 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~----------------~p~----~~~~~~li~ 561 (730)
.+...|+...+.-.+.++...++++|..++-...+ .++ .|+ ...+..+..
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 23444666777777777777777777766544321 111 122 234566777
Q ss_pred HHHhcCCHHHHHHHHHH
Q 004791 562 GLYRERKVQEALLLVEK 578 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~ 578 (730)
.|.+.|.+..|-+-|.+
T Consensus 1154 ~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHhccchHHHHHHHhh
Confidence 77888888777666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.5e-07 Score=91.21 Aligned_cols=201 Identities=14% Similarity=0.028 Sum_probs=128.2
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004791 168 VKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMV-VPNIY-TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLI 245 (730)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 245 (730)
+..|..+...+...|+.+++...+.+..+... .++.. ........+...|++++|..++++..+..+ .|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-h
Confidence 45566666677777888887777777665422 12222 222233445677899999999998887642 23334332 2
Q ss_pred HHHH----hcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 004791 246 LGYC----RNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRV 321 (730)
Q Consensus 246 ~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 321 (730)
..+. ..+..+.+.+.++.... ..+........+...+...|++++|.+.+++..+.. +.+...+..+...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 1222 24555555555554211 222233445566677788888888888888888775 44566777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 322 GRKSEALEFFNEMSARGCE-PNV--HTYTVLIDCLCKENKVDEASELLNRMLEK 372 (730)
Q Consensus 322 g~~~~A~~~~~~m~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 372 (730)
|++++|...+++....... ++. ..|..+...+...|++++|..++++....
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 8888888888887765322 222 23556777888888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.9e-06 Score=84.62 Aligned_cols=191 Identities=16% Similarity=0.200 Sum_probs=100.8
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 247 GYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSE 326 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 326 (730)
+-.....+.+|+.+++.+.... .-...|..+.+-|...|+++.|.++|-+.- .++..|..|.+.|++++
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 3344555666666665554422 122335555566666666666666664421 23445566666666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004791 327 ALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406 (730)
Q Consensus 327 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (730)
|.++-++.. |++.....|.+-..-+-+.|++.+|.++|-.+.+ |+ ..|.+|-+.|..+..+++.++---
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 666654432 3344455555555556666666666666543322 22 245556666666666665543221
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHH
Q 004791 407 NNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVL 471 (730)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 471 (730)
..-..|...+..-+-..|++..|...|-+.-+ |.+-+++|...+.+++|.++-
T Consensus 879 ---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 11223444555556666666666665544322 444455555555565555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.9e-07 Score=81.70 Aligned_cols=315 Identities=13% Similarity=0.106 Sum_probs=164.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHH
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTV-VIFGLC 319 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~ 319 (730)
+++.+..+.+..++++|++++..-.+.. +.+......|..+|....++..|-+.|+++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4555555666777777777776655533 235566667777777777777777777776654 244443332 245556
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHH
Q 004791 320 RVGRKSEALEFFNEMSARGCEPNVHTYTVLID--CLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAA 397 (730)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 397 (730)
+.+.+.+|+.+...|... ++...-..-+. .....+++..+..+.++....| +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 667777777776666532 22221111222 2234566666666666655322 444444455555667777777
Q ss_pred HHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH----HHHHHHHhCCChhHHHHHHHH
Q 004791 398 LQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYN----SLIYGQCREGHLDSAYKVLHL 473 (730)
Q Consensus 398 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~ 473 (730)
.+-|....+-+--.....|+..+.. .+.++.+.|++...+++++|+...+..-. -.+++ ...|+. ..+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh-- 236 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLH-- 236 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHH--
Confidence 7777766654322234455544433 35566777777777777766542221100 00000 000000 0000
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 004791 474 INESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK-GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN 552 (730)
Q Consensus 474 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 552 (730)
..+ -...+|.-...+.+.++++.|.+.+-.|..+ ....|+++...+.-. -..+++.+..+-+.-++..+ |-.
T Consensus 237 --~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP 309 (459)
T KOG4340|consen 237 --QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFP 309 (459)
T ss_pred --HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCC
Confidence 000 0112222333455667777777776666432 122344554443221 12344555555555555554 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 553 SYTYNALIDGLYRERKVQEALLLVEK 578 (730)
Q Consensus 553 ~~~~~~li~~~~~~~~~~~A~~~~~~ 578 (730)
..||..++-.||+..-++-|-.++-+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 56777777777777777777766654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-06 Score=80.52 Aligned_cols=195 Identities=9% Similarity=0.067 Sum_probs=142.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHH-HHHHHH
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTS-LILGYC 249 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~ 249 (730)
+.+.+..+.+..++.+|++++..-.+.. +.+....+.+..+|....++.+|-..++++-.. .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5666777778889999999988777653 226677888889999999999999999999875 344433332 245566
Q ss_pred hcCChhHHHHHHHhchhCCCCcChhhHHH--HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004791 250 RNKDVEKGFRVFMMMPKKGCRRNEVSYTN--LIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEA 327 (730)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 327 (730)
+.+.+.+|+++...|... ++...-.. -.......+++..+..++++....| +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 889999999999888762 22211111 1223346788889999998887654 566666677777899999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 328 LEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLF 375 (730)
Q Consensus 328 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 375 (730)
.+-|+...+.+--.....|+..+ +..+.|+.+.|.+...+++++|++
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 99999988764443556777554 455678999999999999988754
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-05 Score=77.80 Aligned_cols=151 Identities=12% Similarity=0.133 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 499 VEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLP-NSYTYNALIDGLYRERKVQEALLLVE 577 (730)
Q Consensus 499 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~ 577 (730)
.+.....++++.......-..+|..+++.-.+..-++.|..+|.++.+.+..+ ++.+.++++.-++ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44455555555544222233466677777777777777888888877765555 6667777776665 466777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 578 KMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 578 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
--++.- ..+..--...++.+...++-..|+.+|++.+..++.+| ..+|..++.--..-|+...+.++-+++..
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 655432 23444445666777777777788888888777654443 45777777777777887777777776654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-05 Score=77.01 Aligned_cols=424 Identities=13% Similarity=0.152 Sum_probs=244.0
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 004791 235 SPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVV 314 (730)
Q Consensus 235 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 314 (730)
+-|..+|+.||.-+... .++++++.++++.. -++-....|..-|.......+++...++|.+.... ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~-~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN-VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 45888999999877655 89999999999886 45556778888999999999999999999998765 3467777777
Q ss_pred HHHHHhc-CCHHH----HHHHHHHHH-HCCCCC-ChhhHHHHHHHH---------HhcCCHHHHHHHHHHHHHCCCCCCh
Q 004791 315 IFGLCRV-GRKSE----ALEFFNEMS-ARGCEP-NVHTYTVLIDCL---------CKENKVDEASELLNRMLEKGLFPNV 378 (730)
Q Consensus 315 i~~~~~~-g~~~~----A~~~~~~m~-~~~~~~-~~~~~~~li~~~---------~~~g~~~~A~~~~~~~~~~g~~~~~ 378 (730)
++--.+. |+... ..+.|+-.. +.|.++ ....|+..+..+ ..+.+++..+++|++++..-+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 6654432 33222 222333332 334333 233455544432 2334556666777776654222111
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChh-------
Q 004791 379 VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLE--QNLSPTLI------- 449 (730)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~------- 449 (730)
..|+-. ....+. .|..|-.-++. -+...+..|.++++++.. .|......
T Consensus 173 kLW~DY-----------------~~fE~~---IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 173 KLWKDY-----------------EAFEQE---INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred HHHHHH-----------------HHHHHH---HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 223221 111100 01111111110 011223333333333321 11111111
Q ss_pred --------hHHHHHHHHHhCCCh--------hHHHHHHHHH-HhCCCCCCHHhH-HH----HHHHHHhcCC-------HH
Q 004791 450 --------TYNSLIYGQCREGHL--------DSAYKVLHLI-NESGLVPDQFTY-SV----FIDTLCKRGR-------VE 500 (730)
Q Consensus 450 --------~~~~li~~~~~~g~~--------~~a~~~~~~~-~~~~~~~~~~~~-~~----li~~~~~~g~-------~~ 500 (730)
.|..+|.--...+-- ....-++++. .-.+..|+.... .. .-+.+...|+ .+
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 122222211111100 0111112221 112222322111 11 1122333333 45
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 501 EAQVLFDSLEKKGIKAGEVIYTALIDGYCK---EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVE 577 (730)
Q Consensus 501 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 577 (730)
++..+++..+..-...+..+|..+.+---. .+..+.....+++++......-..+|..++..-.+...++.|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 666666666554322234444444332111 12355666777776664333334578888888889999999999999
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004791 578 KMTKMGVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP 656 (730)
Q Consensus 578 ~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 656 (730)
++.+.+..+ ++.++++++..+| .++.+-|.++|+--++.- ..+...-...++-+...++-..|..+|++....++.+
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 999877666 7788888888776 588999999999877652 2244445677788888999999999999999886666
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 657 D--SVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 657 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
| ...|..++.-=..-|+...++++-+++..
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5 67899999998999999999999888864
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-06 Score=89.82 Aligned_cols=89 Identities=11% Similarity=0.062 Sum_probs=39.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh--hhHHHHHHHHHhC
Q 004791 385 IDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNL-SPTL--ITYNSLIYGQCRE 461 (730)
Q Consensus 385 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~ 461 (730)
...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++.++... .++. ..|..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 334444555555555555554442 22333444444445555555555555554443211 0111 1233344445555
Q ss_pred CChhHHHHHHHHH
Q 004791 462 GHLDSAYKVLHLI 474 (730)
Q Consensus 462 g~~~~a~~~~~~~ 474 (730)
|++++|..++++.
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-06 Score=78.89 Aligned_cols=310 Identities=16% Similarity=0.137 Sum_probs=152.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH---HHHHHhCCCHHHHHHHHHHHHhCCCCCChhcH-H
Q 004791 342 NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNAL---IDGYCKEGLMEAALQILDLMKSNNCSPNARTY-N 417 (730)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~ 417 (730)
++.-...+...+...|++..|+.-|...++- |+..|.++ ...|...|+-..|+.=+....+. +||-..- .
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 4555566777777788888888888777764 44445444 34677777777777777777765 5653322 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004791 418 ELICGFCKRKNVHRAMSLLNELLEQNLSPTL--ITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCK 495 (730)
Q Consensus 418 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 495 (730)
.-...+.+.|.+++|..-|+.+++....... ..+..++ ..++- ......+..+..
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~-------~~~e~----------------~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLA-------LIQEH----------------WVLVQQLKSASG 167 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHH-------hHHHH----------------HHHHHHHHHHhc
Confidence 2344567788888888888887776422111 0111000 00000 001111222333
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLL 575 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 575 (730)
.|+...|+.....+++..+ .|...|..-..+|...|++..|+.-++...+.. ..+..++--+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 4444445554444444422 244444444444555555555544444443322 22333333334444444454444444
Q ss_pred HHHHHhCCCCCCHHH----HHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 004791 576 VEKMTKMGVKPTVYT----YTIL---------IEEVLKEGDFDHAHRLLDQMVSLGLKPDVY---TYTAFIQAYCSIGKL 639 (730)
Q Consensus 576 ~~~m~~~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~ 639 (730)
.++.++.+ ||... |-.+ +......++|.++++-.++.++..+.-... .+..+-.++...|++
T Consensus 246 iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 44444432 33211 1000 112233455555555555555543221111 222334445555566
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 640 DEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.+|++...+.++ +.|| ..++.--..+|.-...+++|+.-|+...+
T Consensus 324 ~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 324 GEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666666666555 3343 55555555555555556666666665554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-05 Score=74.86 Aligned_cols=315 Identities=10% Similarity=0.031 Sum_probs=145.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh-HHHHHHH
Q 004791 239 FTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRT-YTVVIFG 317 (730)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~ 317 (730)
.-.-.+...+...|++.+|+.-|....+. -+.+-.++-.-...|...|+-..|+.-+.+..+. +||-.. -..-...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~-dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG-DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC-CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 33344455555556666666655555541 1111122222234455555555555555555543 344221 1122334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHH
Q 004791 318 LCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAA 397 (730)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 397 (730)
+.+.|.+++|..-|+.+++.....+ ....++.+.-..++-.. ....+..+.-.|+...|
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhH
Confidence 4555555555555555555422110 00111111111111111 11123334556677777
Q ss_pred HHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 004791 398 LQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINES 477 (730)
Q Consensus 398 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 477 (730)
++....+.+.. +.|...|..-..+|...|++..|+.-++...+.. ..+..++..+-..+...|+.+.++...++.++.
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 77777666653 4456666666667777777777766666554432 224445555566666677777777666666653
Q ss_pred CCCCCHHhHHHHH-------------HHHHhcCCHHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHhcCChhHHHHHH
Q 004791 478 GLVPDQFTYSVFI-------------DTLCKRGRVEEAQVLFDSLEKKGIKAGEV---IYTALIDGYCKEGKIDDAHSLL 541 (730)
Q Consensus 478 ~~~~~~~~~~~li-------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~ 541 (730)
.||...+-..- ......+++.++++..+...+..+..... .+..+-.++...|++.+|+...
T Consensus 253 --dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 253 --DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred --CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 34432221110 11122334444444444444433221111 2222333444445555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 542 ERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 542 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
.+.+... +.|+.++.--..+|.-...++.|+.-|+.+.+.
T Consensus 331 ~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 331 KEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5554433 223444444445555455555555555555543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=95.04 Aligned_cols=137 Identities=15% Similarity=0.065 Sum_probs=97.2
Q ss_pred HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 571 EALLLVEKMT-KMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKM 649 (730)
Q Consensus 571 ~A~~~~~~m~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 649 (730)
...++|-++. ..+..+|..+...|.-.|--.|++++|...|+.++...+. |..+||.|...++...+.++|+..|.++
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 3344444443 3444577788888888888888888888888888876433 7778888888888888888899888888
Q ss_pred HHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcC------CCCCHHHHHHHHHHHHcCChhh
Q 004791 650 NREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMF---DAG------CEPSHHTYAFLIKHLSNKKVDE 710 (730)
Q Consensus 650 ~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~---~~g------~~p~~~~~~~l~~~l~~~~~~e 710 (730)
++ +.|+ +.+...|+-.|...|.++||.+.|-+.+ .++ ..++...|.+|=.+|...+..+
T Consensus 491 Lq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 491 LQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred Hh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 88 5676 4456667778888888888888877664 221 1223346666666666665555
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-05 Score=94.92 Aligned_cols=373 Identities=14% Similarity=0.033 Sum_probs=206.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 004791 279 LIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENK 358 (730)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 358 (730)
....+...|++.+|........... .-..........+...|+++.+...++.+.......+..........+...|+
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 3444556677666665444432110 00011112223344567777666666554211111122233444555567788
Q ss_pred HHHHHHHHHHHHHCCC------CCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh----hcHHHHHHHHHhc
Q 004791 359 VDEASELLNRMLEKGL------FPN--VVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA----RTYNELICGFCKR 426 (730)
Q Consensus 359 ~~~A~~~~~~~~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~ 426 (730)
+++|...+......-- .+. ......+...+...|++++|...+++........+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 8888888877654210 001 111222334456788888888888877653111111 2334555566778
Q ss_pred CCHHHHHHHHHHHHHCCC---CC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHhC----CCC--C-CHHhHHHHHHHHH
Q 004791 427 KNVHRAMSLLNELLEQNL---SP--TLITYNSLIYGQCREGHLDSAYKVLHLINES----GLV--P-DQFTYSVFIDTLC 494 (730)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~ 494 (730)
|++++|...+++...... .+ ...++..+...+...|++++|...+++..+. +.. + ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 888888888877764211 11 1234455666777888888888887765442 211 1 1223444555666
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHH-----HHHHHHHH
Q 004791 495 KRGRVEEAQVLFDSLEKK----GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC-LPNSYTY-----NALIDGLY 564 (730)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-----~~li~~~~ 564 (730)
..|++++|...+.+.... +.......+..+...+...|++++|.+.+++...... ......+ ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 778888888888776543 1111233444456677778888888888877654210 0111111 11123344
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc
Q 004791 565 RERKVQEALLLVEKMTKMGVKPT---VYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKP-DVYTYTAFIQAYCSI 636 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~ 636 (730)
..|+.+.|...+........... ...+..+..++...|++++|...++++... |... ...+...+..++...
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 57788888888766543221111 111345666777888888888888877653 2222 223556667778888
Q ss_pred CCHHHHHHHHHHHHHCC
Q 004791 637 GKLDEAEDLIVKMNREG 653 (730)
Q Consensus 637 g~~~~A~~~~~~m~~~g 653 (730)
|+.++|...+.+..+..
T Consensus 745 G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 745 GRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 88888888888887643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-05 Score=94.07 Aligned_cols=372 Identities=11% Similarity=0.018 Sum_probs=226.1
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 004791 245 ILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRK 324 (730)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 324 (730)
...+...|++.+|........... .-..........+...|+++.+...++.+.......+..........+...|++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 344556677776666555443210 000111222334556788888777777653221111222333445556678999
Q ss_pred HHHHHHHHHHHHCCC------CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCC
Q 004791 325 SEALEFFNEMSARGC------EPN--VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNV----VTYNALIDGYCKEG 392 (730)
Q Consensus 325 ~~A~~~~~~m~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g 392 (730)
++|...+......-. .+. ......+...+...|++++|...+++..+.-...+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 999998887754311 111 112223345566789999999999988763111121 24456667778899
Q ss_pred CHHHHHHHHHHHHhCCC---CC--ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHh
Q 004791 393 LMEAALQILDLMKSNNC---SP--NARTYNELICGFCKRKNVHRAMSLLNELLEQ----NLS--P-TLITYNSLIYGQCR 460 (730)
Q Consensus 393 ~~~~A~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~ 460 (730)
++++|...+.+.....- .+ ...++..+...+...|++++|...+++.... +.. + ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999999888764210 11 1234455667788899999999998876652 211 1 12334455667777
Q ss_pred CCChhHHHHHHHHHHhCC--CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHH-----HHHHHHHHh
Q 004791 461 EGHLDSAYKVLHLINESG--LVP--DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG-EVIY-----TALIDGYCK 530 (730)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-----~~li~~~~~ 530 (730)
.|++++|...+.+..... ..+ ....+..+...+...|+.++|...++.......... ...+ ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 899999999888765421 111 123344456677789999999999888754311101 1111 112244556
Q ss_pred cCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcC
Q 004791 531 EGKIDDAHSLLERMLSDDCLPN---SYTYNALIDGLYRERKVQEALLLVEKMTKM----GVKP-TVYTYTILIEEVLKEG 602 (730)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g 602 (730)
.|+.+.|..++........... ...+..+..++...|++++|...+++.... |... ...+...+..++...|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 8899999998877554221111 112345667778899999999999887752 3222 2345667778888999
Q ss_pred CHHHHHHHHHHHHHCC
Q 004791 603 DFDHAHRLLDQMVSLG 618 (730)
Q Consensus 603 ~~~~A~~~~~~~~~~~ 618 (730)
+.++|.+.+.++.+..
T Consensus 746 ~~~~A~~~L~~Al~la 761 (903)
T PRK04841 746 RKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998854
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-07 Score=90.41 Aligned_cols=150 Identities=21% Similarity=0.237 Sum_probs=84.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 004791 491 DTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY----RE 566 (730)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~----~~ 566 (730)
.++...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+ .|. +...+..++. -.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCc
Confidence 3444556666666665432 144555556666777777777777777766543 232 2222333322 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL-DEAEDL 645 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~ 645 (730)
+.+++|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3567777777776553 3466666677777777777777777777776655433 555566666666666665 556666
Q ss_pred HHHHHH
Q 004791 646 IVKMNR 651 (730)
Q Consensus 646 ~~~m~~ 651 (730)
+.++..
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 666665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-05 Score=79.95 Aligned_cols=230 Identities=10% Similarity=-0.032 Sum_probs=145.4
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh--hH
Q 004791 460 REGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRG-RVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKI--DD 536 (730)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~ 536 (730)
..+..++|+.+..++++... -+..+|+.-..++...| ++++++..++++.+.+++ +..+|+.-...+.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 34566777777777766432 13344554444555556 567778888777776555 555666555555555552 56
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CC----HHHHHH
Q 004791 537 AHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE---GD----FDHAHR 609 (730)
Q Consensus 537 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~ 609 (730)
++.+++++++.+ +.|..+|+.....+...|+++++++.++++++.+ +.|...|+.....+.+. |. .+++++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 777777777765 5567777777777777788888888888888766 45566666666555443 22 245677
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------------
Q 004791 610 LLDQMVSLGLKPDVYTYTAFIQAYCSI----GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG------------- 672 (730)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g------------- 672 (730)
+..+++...+. |...|+.+...+... ++..+|.+.+.+..+.+ ..+......|++.|+...
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 77777765433 666777777777663 34566777777776643 335667777777776532
Q ss_pred -----CHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 673 -----LIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 673 -----~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
..++|.++++.+. .+.|=..-|+
T Consensus 283 ~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 283 AEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred ccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 2366777777773 2455444444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.1e-07 Score=91.48 Aligned_cols=241 Identities=14% Similarity=0.100 Sum_probs=181.2
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 004791 444 LSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTA 523 (730)
Q Consensus 444 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 523 (730)
.+|-...-..+...+...|-..+|..++++.. .|...+.+|+..|+..+|..+..+..++ +|+...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444445567788888899999999888654 4666778889999999999988888774 468888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004791 524 LIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD 603 (730)
Q Consensus 524 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 603 (730)
+++......-+++|.++.+..... .-..+.......++++++.+.|+.-.+.. +--..+|..+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888888888888888888765432 11122222334788999999998877765 4567888888888899999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 604 FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKR 683 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (730)
++.|.+.|...+...+. +...||.+..+|.+.|+..+|...+++..+-+ ..+...|...+....+.|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999988875432 56789999999999999999999999998876 44566777777778889999999999998
Q ss_pred HHH--cCCCCCHHHHHHHHHHHHcC
Q 004791 684 MFD--AGCEPSHHTYAFLIKHLSNK 706 (730)
Q Consensus 684 m~~--~g~~p~~~~~~~l~~~l~~~ 706 (730)
+.+ +... |..+...++....+.
T Consensus 613 ll~~~~~~~-d~~vl~~iv~~~~~~ 636 (777)
T KOG1128|consen 613 LLDLRKKYK-DDEVLLIIVRTVLEG 636 (777)
T ss_pred HHHhhhhcc-cchhhHHHHHHHHhh
Confidence 863 2222 555555555555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-07 Score=89.47 Aligned_cols=253 Identities=17% Similarity=0.153 Sum_probs=158.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 004791 424 CKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQ 503 (730)
Q Consensus 424 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 503 (730)
.-.|.+..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666654443 112111112333445566677777765443 2332222 455555544444443334445555
Q ss_pred HHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 504 VLFDSLEKKGIK-AGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 504 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
.-+++....... .+..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 544444333222 23333334445677889999999888643 46777778889999999999999999999975
Q ss_pred CCCCCHHHHHHHHHHHHH--c--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 583 GVKPTVYTYTILIEEVLK--E--GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 583 ~~~~~~~~~~~l~~~~~~--~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
+ .|.. ...+..++.. . +.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++++..+.+ +-|.
T Consensus 161 ~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 D--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp S--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred C--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 4 4443 3334444432 3 3699999999998765 45688899999999999999999999999988754 3367
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHH
Q 004791 659 VTYTLLICAYAHLGLI-YSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 659 ~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ 694 (730)
.++..++.+....|+. +.+.+++.++... .|++.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~ 270 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCCh
Confidence 8888888888889988 6677888888764 56543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.7e-06 Score=81.79 Aligned_cols=209 Identities=8% Similarity=0.004 Sum_probs=161.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-
Q 004791 492 TLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEG-KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKV- 569 (730)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~- 569 (730)
.+...++.++|+.+..++++..+. +..+|+.-..++...| ++++++..++++++.+ +.+..+|+.-...+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 344567889999999999988655 6667777777777777 6799999999999876 56667787666666666653
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----HH
Q 004791 570 -QEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI---GKL----DE 641 (730)
Q Consensus 570 -~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~ 641 (730)
++++.+++++++.. +.|..+|+.....+...|+++++++.++++++.++. |...|+....++.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 77899999999876 578899999999999999999999999999998765 777888877776654 323 56
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 004791 642 AEDLIVKMNREGIVPDSVTYTLLICAYAHL----GLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNK 706 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~ 706 (730)
++++..+++... +-|...|+.+...+... ++..+|.+++.+..+.+ ..+......|++.++..
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 888888888753 34788899998888873 44567989988877643 33456677888888764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-06 Score=87.63 Aligned_cols=223 Identities=20% Similarity=0.122 Sum_probs=127.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH
Q 004791 317 GLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA 396 (730)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 396 (730)
-+.+.|++.+|.-.|+..++.++. +...|..|......+++-..|+..+.+.++.... |......|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 345666777777777777766554 6667777777777777777777777777665433 56666666677777777777
Q ss_pred HHHHHHHHHhCCCC--------CChhcHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhCCChhHH
Q 004791 397 ALQILDLMKSNNCS--------PNARTYNELICGFCKRKNVHRAMSLLNELLE-QNLSPTLITYNSLIYGQCREGHLDSA 467 (730)
Q Consensus 397 A~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a 467 (730)
|+..++..+....+ ++...-.. ..+..........++|-++.. .+..+|......|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77777666543200 00000000 011111223333444444333 33335566666666666666666677
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004791 468 YKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERML 545 (730)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 545 (730)
+..|+.++... +-|...||.|...++...+.++|+..|.++++..+. =+.++..|.-.|...|.+++|...|-..+
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 66666666543 225556666666666666666666666666665332 12344445555666666666666665544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00073 Score=72.32 Aligned_cols=453 Identities=13% Similarity=0.082 Sum_probs=226.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004791 181 FHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGC--CKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGF 258 (730)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 258 (730)
.+++..|+.......+. .|+. .|..++.++ .+.|+.++|..+++.....+.. |..+...+-.+|...|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 35666777777666664 3443 334444444 3678888888777776655443 6777777777888888888888
Q ss_pred HHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------HHHHH
Q 004791 259 RVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGR----------KSEAL 328 (730)
Q Consensus 259 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~ 328 (730)
.++++..... |+......+..+|.+.+.+.+-.+.--++.+. .+-+...+-++++.+.+.-. ..-|.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 8888777643 55666667777777777766544444333332 23344444455555544321 12355
Q ss_pred HHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004791 329 EFFNEMSARG-CEPNVHTYTVLIDCLCKENKVDEASELLN-RMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406 (730)
Q Consensus 329 ~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (730)
+.++.+.+.+ .--+..-.......+-..|++++|.+++. ...+.-...+...-+.-++.+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5566665543 22122223333445566788888888883 333332333444445566777788888888888888777
Q ss_pred CCCCCChhcHHHHHHHH----------------HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 004791 407 NNCSPNARTYNELICGF----------------CKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKV 470 (730)
Q Consensus 407 ~~~~~~~~~~~~li~~~----------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 470 (730)
.| +|. |...++.+ ...+..+...+...+.+......-...+--+..-+..-|+.+++.-.
T Consensus 255 k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 255 KG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred hC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 75 222 33322221 11223333333333333321110111111222222345677665544
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--H-H--HHHHHHHHHHhcCC-----hhHHHHH
Q 004791 471 LHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG--E-V--IYTALIDGYCKEGK-----IDDAHSL 540 (730)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~-~--~~~~li~~~~~~g~-----~~~A~~~ 540 (730)
|-.- .|..| .|..=+..|...=..+.-..++........... . . .+...+..-...|. .+.-..+
T Consensus 331 y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~ 405 (932)
T KOG2053|consen 331 YFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAY 405 (932)
T ss_pred HHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 4221 12121 111111111111122222222222221110000 0 0 00111111111121 1111222
Q ss_pred HHHHH---hC------CCCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 541 LERML---SD------DCLPNS---------YTYNALIDGLYRERKVQ---EALLLVEKMTKMGVKPTVYTYTILIEEVL 599 (730)
Q Consensus 541 ~~~~~---~~------~~~p~~---------~~~~~li~~~~~~~~~~---~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 599 (730)
+.+.. +. ++-|.. -+-+.|++.+.+.++.. +|+-+++.-.... +-|..+--.++..|+
T Consensus 406 ~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~ 484 (932)
T KOG2053|consen 406 VRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYS 484 (932)
T ss_pred HHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHH
Confidence 21111 11 111221 23466777787777654 4555555555543 345566667788888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
-.|-+..|.++|..+--..+.-|..-|. +...+...|++..+...++....
T Consensus 485 ~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 485 YLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHH
Confidence 8888888888888776555554443332 22344566777777777766554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00091 Score=71.61 Aligned_cols=487 Identities=15% Similarity=0.112 Sum_probs=238.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHH
Q 004791 178 LSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKG 257 (730)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 257 (730)
+.|.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|++..+. .|+......+..+|.+.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888777666554433 7778888888888889999999999888875 35566666777778887777553
Q ss_pred HHHHHhchhCCCCcChhhHHHHHHHHHhcCC----------HHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCCHHH
Q 004791 258 FRVFMMMPKKGCRRNEVSYTNLIHGLCEAKR----------VDEALDLFRRMGEDD-CRPTVRTYTVVIFGLCRVGRKSE 326 (730)
Q Consensus 258 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~ 326 (730)
.+.--++-+ .++.+...+-+++..+.+.-. ..-|.+.++.+.+.+ .-.+..-.......+...|.+++
T Consensus 130 Qkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 333222222 333455555555555544211 123555566665543 22222223333445556788899
Q ss_pred HHHHHH-HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---------------
Q 004791 327 ALEFFN-EMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCK--------------- 390 (730)
Q Consensus 327 A~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--------------- 390 (730)
|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++..+|.. | |...++.+.+
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhh
Confidence 988883 3333333334444456677778888888888888888887643 2 3333332211
Q ss_pred -CCCHHHHHHHHHHHHhCCCCCChhcHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH
Q 004791 391 -EGLMEAALQILDLMKSNNCSPNARTYNELICG---FCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS 466 (730)
Q Consensus 391 -~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 466 (730)
.+..+...+...+..... ....|-+-+.. +..-|+.+++...|-+-.. ..| .|..=+..|...=..+.
T Consensus 285 ~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg--~kp---cc~~Dl~~yl~~l~~~q 356 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFG--DKP---CCAIDLNHYLGHLNIDQ 356 (932)
T ss_pred hhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhC--CCc---HhHhhHHHhhccCCHHH
Confidence 122222222222222211 11222222222 2345666666544432211 111 11111112222212222
Q ss_pred HHHHHHHHHhCCCCCCHH-------hHHHHHHHHHhcC-----CHHHHHHHHHHHH---HcC------CCcCH-------
Q 004791 467 AYKVLHLINESGLVPDQF-------TYSVFIDTLCKRG-----RVEEAQVLFDSLE---KKG------IKAGE------- 518 (730)
Q Consensus 467 a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g-----~~~~A~~~~~~~~---~~~------~~~~~------- 518 (730)
-..++....... ++.. .+...+......| ..+.-..++.+.. ++| ..|+.
T Consensus 357 ~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~ 434 (932)
T KOG2053|consen 357 LKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDEL 434 (932)
T ss_pred HHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHH
Confidence 222222222110 0000 0111111111112 1122222222211 111 11121
Q ss_pred --HHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004791 519 --VIYTALIDGYCKEGKID---DAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTI 593 (730)
Q Consensus 519 --~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 593 (730)
.+-+.|++.+-+.++.. +|+-+++..+... +.|..+--.+|..|+-.|-+..|.++|+.+--..+.-|..-|.
T Consensus 435 llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~- 512 (932)
T KOG2053|consen 435 LLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL- 512 (932)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-
Confidence 23456677777777654 4555666555543 4455566677788888888888888888776555555543332
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHh
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI---VKMNREGIVPDSVTYTLLICAYAH 670 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~---~~m~~~g~~~~~~~~~~l~~~~~~ 670 (730)
+..-+...|++..+...++.....--..-..+-..+.-+ .+.|.+....++. ++|......--..+-+..++..+.
T Consensus 513 ~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~ 591 (932)
T KOG2053|consen 513 IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCN 591 (932)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223344556666666666655442101011111122222 3445555444432 222221111112233444555566
Q ss_pred cCCHHHHHHHHHHHH
Q 004791 671 LGLIYSAFDVLKRMF 685 (730)
Q Consensus 671 ~g~~~~A~~~~~~m~ 685 (730)
.++.++-...++.|.
T Consensus 592 ~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 592 ADRGTQLLKLLESMK 606 (932)
T ss_pred CCcHHHHHHHHhccc
Confidence 666666666655554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.4e-06 Score=75.69 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=104.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004791 522 TALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE 601 (730)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 601 (730)
..+-..+...|+-+.+..+........ +.|....+.++....+.|++.+|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445555666666666666665544332 4455556666667777777777777777776654 56777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 602 GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVL 681 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (730)
|++++|..-|.+..+..+. +...++.+...|.-.|+++.|..++......+ .-|..+-..|.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777777765333 45566667667777777777777777776644 235666666666777777777777665
Q ss_pred HHH
Q 004791 682 KRM 684 (730)
Q Consensus 682 ~~m 684 (730)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.9e-06 Score=86.97 Aligned_cols=284 Identities=13% Similarity=0.093 Sum_probs=182.4
Q ss_pred HHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhc----CCccccccCHHh
Q 004791 95 FSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNES----GSEFSLKLSVKG 170 (730)
Q Consensus 95 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 170 (730)
++.....+.+..-.......+++.+.+.++.+...+-+.++-. +..+++....-..+ ....+++|--..
T Consensus 328 ~~~~iL~q~~~~w~i~~salllr~~~E~~~~RtveR~~~q~q~-------lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~ 400 (777)
T KOG1128|consen 328 LTSTLLSQTEKYWSIQASALLLRFLLESTRSRTVERALSQMQF-------LVKAIQMKEYSVLNRLSYIYAPHLPPIWQL 400 (777)
T ss_pred HHHHHhhccCCceeeehHHHHHHHHHHhcCccchhhHHHHHHH-------HHHHHhhccHhHHhcccccccCCCCCcchH
Confidence 4555555544334555666777777766655444333332211 00111100000000 111123444445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCR 250 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 250 (730)
--.+...+...|....|..+|++.- .|.-+|.+|+..|+..+|..+..+-++. +||...|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 5566777888888888888887553 4677788888888888888888877773 5777778777777776
Q ss_pred cCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 251 NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEF 330 (730)
Q Consensus 251 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (730)
..-+++|.++++....+ +-..+.......++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 66778888887765431 22233333445678888888887776654 44566777777777788888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004791 331 FNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406 (730)
Q Consensus 331 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (730)
|.......+. +...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|-..+....+.|.+++|++.+.++..
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8777765333 56778888888888888888888888887765 33555666666667777888888887777654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-05 Score=87.77 Aligned_cols=228 Identities=15% Similarity=0.120 Sum_probs=132.7
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhC-CCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINES-GLV---PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYT 522 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 522 (730)
....|...|....+.++.++|.+++++++.. ++. --...|.++++.-..-|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3445666666666666666666666665542 111 112345555555555666666666666666542 1234566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHc
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVK-PTVYTYTILIEEVLKE 601 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~ 601 (730)
.|...|.+.++.++|.++++.|.+.- ......|...+..+.+..+-++|..++.++++.-.+ .......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 66667777777777777777776642 245566666777777766667777777666653211 1233334444555567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 004791 602 GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD--SVTYTLLICAYAHLGLIYSAF 678 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~ 678 (730)
|+.+.++.+|+..+...++ -...|+.+++.-.++|..+.++.+|++....++.|- ...|...+..=-..|+-+.+.
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 7777777777776665333 445677777777777777777777777777666553 334444444334445544433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.1e-06 Score=75.91 Aligned_cols=126 Identities=15% Similarity=0.180 Sum_probs=89.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 004791 566 ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY-CSIGK--LDEA 642 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 642 (730)
.++.+++...+++.++.. +.|...|..+...|...|++++|...|++..+..+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 556677777777777655 567777888888888888888888888888776533 666777777754 56666 4788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004791 643 EDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHT 695 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 695 (730)
.+++++..+.+ +.+..++..++..+...|++++|+..|+++++. ..|+..-
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r 180 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNR 180 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccH
Confidence 88888888754 235677777778888888888888888888764 2444433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.6e-08 Score=60.09 Aligned_cols=32 Identities=44% Similarity=0.877 Sum_probs=14.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHhc
Q 004791 233 GLSPDTFTYTSLILGYCRNKDVEKGFRVFMMM 264 (730)
Q Consensus 233 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 264 (730)
|+.||..+||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.2e-06 Score=79.33 Aligned_cols=186 Identities=17% Similarity=0.110 Sum_probs=117.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKA--GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS---YTY 556 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~ 556 (730)
....+..+...+...|++++|...++++....+.. ....+..+..++.+.|++++|+..++++++.. +.+. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence 45566666677777888888888888777654321 12355667777778888888888888877654 1111 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004791 557 NALIDGLYRE--------RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTA 628 (730)
Q Consensus 557 ~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 628 (730)
..+...+... |++++|.+.++++.+.. +.+...+..+..... ... .. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 4444445443 56777777777777643 122222221111100 000 00 011225
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 629 FIQAYCSIGKLDEAEDLIVKMNREGI-VP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 629 l~~~~~~~g~~~~A~~~~~~m~~~g~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
+...+.+.|++++|+..+++..+..- .| ....+..++.++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678899999999999999987531 12 3578889999999999999999999988654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.8e-08 Score=59.65 Aligned_cols=32 Identities=53% Similarity=1.035 Sum_probs=20.5
Q ss_pred CCCcChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 268 GCRRNEVSYTNLIHGLCEAKRVDEALDLFRRM 299 (730)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (730)
|+.||.++|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.2e-05 Score=85.75 Aligned_cols=228 Identities=14% Similarity=0.100 Sum_probs=152.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCc---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK-GIKA---GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYN 557 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 557 (730)
....|-..+....+.++.++|+++.++++.. ++.- -..+|.++++....-|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4456667777777778888888888877654 1111 12467777777667777777777887776642 2345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP-DVYTYTAFIQAYCSI 636 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 636 (730)
.|...|.+.+.+++|.++++.|.+.- .-....|...+..+.++.+-+.|.+++.++++.=++. -.....-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 77777888888888888888887642 3566777778888888888888888888777642221 122334445555677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCChhhhhh
Q 004791 637 GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSH--HTYAFLIKHLSNKKVDERKQ 713 (730)
Q Consensus 637 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~l~~~~~~e~~~ 713 (730)
|+.+.+..+|+...... +.-...|+.+++.=.++|+.+.+..+|++....++.|-. +.|..-+..=...|+.+...
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 88888888888777643 335677888888888888888888888888877776644 34444444444445554433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-05 Score=73.88 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=86.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 004791 531 EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEV-LKEGD--FDHA 607 (730)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 607 (730)
.++.+++...+++.++.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 555666666677666655 5667777777777777777777777777777755 45666666666653 55565 4777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 608 HRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 608 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
.+++++.++.++. +...+..+...+...|++++|+..|+++.+.. +|+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 7888777776544 66677777777777888888888888877653 3443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-05 Score=72.82 Aligned_cols=160 Identities=17% Similarity=0.118 Sum_probs=131.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004791 487 SVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRE 566 (730)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 566 (730)
..+-..+...|+-+....+......... .+......++....+.|++.+|...+++..... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 5566677778888888887777655433 366677778888999999999999999998876 88999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 646 (730)
|+.++|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++......+.. |..+-..+..+....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999998864 456677888888899999999999999999886533 7777888888899999999999887
Q ss_pred HHHH
Q 004791 647 VKMN 650 (730)
Q Consensus 647 ~~m~ 650 (730)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-05 Score=85.47 Aligned_cols=133 Identities=11% Similarity=0.100 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
+...+..|.....+.|++++|..+++...+.. |.+......++..+.+.+++++|+..+++..... +.+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 45666666666666677777777776666654 3344555666666666677777777666666654 345555566666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
++.+.|++++|.++|+++...+. .+..++..+..++...|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666777777777776666322 24556666666666667777777776666653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5e-05 Score=83.03 Aligned_cols=182 Identities=9% Similarity=0.081 Sum_probs=142.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004791 479 LVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNA 558 (730)
Q Consensus 479 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 558 (730)
...+...+..|.....+.|.+++|..+++.+.+..+. +......+...+.+.+++++|+...++.+... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4556888999999999999999999999999998655 67788889999999999999999999999876 556677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 638 (730)
+..++.+.|++++|..+|+++...+ +.+..++..+...+...|+.++|...|++..+.. .+....|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HH
Confidence 8888899999999999999999844 4568899999999999999999999999998853 34455555544 33
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHh
Q 004791 639 LDEAEDLIVKMNREGI----VPDSVTYTLLICAYAH 670 (730)
Q Consensus 639 ~~~A~~~~~~m~~~g~----~~~~~~~~~l~~~~~~ 670 (730)
...-..+++++.-.+. ..........+.-+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 4444556666654432 2234445555544443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.5e-06 Score=71.15 Aligned_cols=91 Identities=8% Similarity=-0.050 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 638 (730)
+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|+++...++. +...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence 3444445555555555555555443 334445555555555555555555555555544321 44445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 004791 639 LDEAEDLIVKMNR 651 (730)
Q Consensus 639 ~~~A~~~~~~m~~ 651 (730)
+++|+..|++..+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-05 Score=76.82 Aligned_cols=188 Identities=11% Similarity=0.042 Sum_probs=125.3
Q ss_pred cCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HhH
Q 004791 166 LSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVV-PN-IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDT--FTY 241 (730)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~ 241 (730)
.....+..+...+.+.|++++|...|+++++..+. |. ..++..+..++.+.|++++|...++++++..+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45567777888889999999999999999875321 11 236777888999999999999999999886432222 145
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 004791 242 TSLILGYCRN--------KDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTV 313 (730)
Q Consensus 242 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 313 (730)
..+..++.+. |++++|.+.|+.+.... +.+...+..+..... .... . ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------H--------HHHHHH
Confidence 5555555554 67888888888887643 122222222211100 0000 0 011124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 314 VIFGLCRVGRKSEALEFFNEMSARGCE-P-NVHTYTVLIDCLCKENKVDEASELLNRMLEK 372 (730)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 372 (730)
+...+.+.|++++|+..++........ | ....+..+...+.+.|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566788889999999988888876331 2 3567888888899999999999888887664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.9e-05 Score=81.84 Aligned_cols=166 Identities=8% Similarity=0.044 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHH
Q 004791 204 YTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPD-TFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHG 282 (730)
Q Consensus 204 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 282 (730)
..+..|+..+...+++++|.++.+...+.. |+ ...|-.+...+.+.++++++.-+ .++..
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 355666666666666666666666555432 22 22222222344455554444333 12222
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004791 283 LCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEA 362 (730)
Q Consensus 283 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 362 (730)
.....++.-...+...|.+. .-+..++..++.+|-+.|+.++|..+++++++..+. |+.+.|.+...|... ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHH
Confidence 22222332222233333332 123445566666666666666666666666666543 666666666666666 66666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004791 363 SELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSN 407 (730)
Q Consensus 363 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (730)
++++.+.+.. |...+++.++.+++.++...
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 6666665543 44455566666666666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-05 Score=69.91 Aligned_cols=121 Identities=9% Similarity=-0.085 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004791 504 VLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG 583 (730)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 583 (730)
.++++..+.+ +..+..+...+...|++++|...|+..+... +.+...|..+..++.+.|++++|...|++..+..
T Consensus 14 ~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455555542 2234456677778888888888888887765 5577778888888888888888888888888765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 584 VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 584 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
+.+...+..+..++...|++++|++.|++.++..+. +...|.....
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~ 134 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQN 134 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 567777888888888888888888888888775422 4444444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00019 Score=71.69 Aligned_cols=138 Identities=19% Similarity=0.205 Sum_probs=77.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004791 493 LCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN-SYTYNALIDGLYRERKVQE 571 (730)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~ 571 (730)
+...|++++|+..++.+++..+. |+..+....+.+.+.|+.++|.+.+++++... |+ ....-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 33456666666666665555332 55555555666666666666666666666553 33 4444555566666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 572 ALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 572 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|+.+++...... +.|+..|..|..+|...|+..+|..-.. ..|...|++++|+..+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHH
Confidence 666666555543 4556666666666666665555433322 234445666666666665555
Q ss_pred C
Q 004791 652 E 652 (730)
Q Consensus 652 ~ 652 (730)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.1e-05 Score=83.65 Aligned_cols=169 Identities=14% Similarity=0.084 Sum_probs=111.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 004791 237 DTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIF 316 (730)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 316 (730)
+...+..|+..|...+++++|.++.+...+.. +.....|-.+...+.+.++.+++..+ .+ +.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL---------------ID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh---------------hh
Confidence 45667788888888888888888888665532 22233344444466666665555544 22 22
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH
Q 004791 317 GLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA 396 (730)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 396 (730)
......++.-...++..|...+ -+...+..++.+|-+.|+.++|..+++++++..+ -|+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHH
Confidence 2223333433333334444432 2455788899999999999999999999998874 3888899999999988 9999
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 397 ALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQ 442 (730)
Q Consensus 397 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 442 (730)
|.+++.+.... +...+++.++.+++.++...
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 99998887654 34445555566655555553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00011 Score=67.18 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=82.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR---- 565 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 565 (730)
...|+..|++++|++..+... +......=+..+.+..+.+-|...+++|.+.+ +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344566666666666655411 22233333444555666666666666666532 44555555555442
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHH
Q 004791 566 ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE-AED 644 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~ 644 (730)
.+.+.+|.-+|++|.+.- +|+..+.+....++...|++++|..+++.++....+ +..+...++-+-...|+-.+ ..+
T Consensus 186 gek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHH
Confidence 234666666666666532 566666666666666666666666666666665433 45555555544444554433 333
Q ss_pred HHHHHHH
Q 004791 645 LIVKMNR 651 (730)
Q Consensus 645 ~~~~m~~ 651 (730)
.+.+++.
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 4445444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-05 Score=69.33 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=74.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 576 VEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIV 655 (730)
Q Consensus 576 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 655 (730)
++++++.. +.+......+...+...|++++|.+.|+++...+.. +...|..+..++...|++++|...+++..+.+ +
T Consensus 6 ~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 6 LKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred HHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 44444432 223444555666667777777777777777665422 56667777777777777777777777776643 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 656 PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
.+...+..+...+...|++++|...|++.++. .|+...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 35666666777777777777777777777663 45554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00017 Score=72.02 Aligned_cols=154 Identities=23% Similarity=0.236 Sum_probs=123.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT-VYTYTILIEEVL 599 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~ 599 (730)
+......+...|.+++|+..++.++... |.|+..+....+.+.+.++.++|.+.++++.... |+ ....-.+..+|.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHH
Confidence 3333445667899999999999988764 5667777777888999999999999999999864 54 667778899999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFD 679 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 679 (730)
+.|+.++|+.+++........ |...|..|..+|...|+..+|.....+ +|.-.|++++|+.
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~ 446 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAII 446 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHH
Confidence 999999999999999887543 888999999999999998888765544 3556799999999
Q ss_pred HHHHHHHcCCCCCHHHHH
Q 004791 680 VLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 680 ~~~~m~~~g~~p~~~~~~ 697 (730)
.+....+. ++++..+|.
T Consensus 447 ~l~~A~~~-~~~~~~~~a 463 (484)
T COG4783 447 FLMRASQQ-VKLGFPDWA 463 (484)
T ss_pred HHHHHHHh-ccCCcHHHH
Confidence 99998765 345555544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-05 Score=67.52 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=78.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004791 540 LLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL 619 (730)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 619 (730)
.+++.+... +.+......+...+...|++++|...++.+...+ +.+...+..+...+...|++++|..++++..+.+.
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444443 2234455566666777778888888877777654 45667777777777778888888888887776542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004791 620 KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVT 660 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 660 (730)
.+...+..+..++...|++++|...+++..+. .|+...
T Consensus 83 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 83 -DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 25666777777778888888888888877773 354433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00035 Score=64.03 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=35.2
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 388 YCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCK----RKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGH 463 (730)
Q Consensus 388 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 463 (730)
+.+..+.+-|.+.+++|.+.. +..|.+.|..++.+ .+.+.+|.-+|++|-++ .+|+..+.+.....+...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 334444444444444444332 23333333333322 22344444444444332 23344444444444444444
Q ss_pred hhHHHHHHHHHHhC
Q 004791 464 LDSAYKVLHLINES 477 (730)
Q Consensus 464 ~~~a~~~~~~~~~~ 477 (730)
+++|..+++....+
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 44444444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0014 Score=59.70 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=88.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKV 569 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 569 (730)
+-+....|+.+.|...++.+.+.-+. +..+-..-...+-..|++++|+++++.+++.+ |.|.+++-.-+...-..|+.
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 33444556666666666666555321 22222222223344566677777777766665 45555555555555556666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHH
Q 004791 570 QEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG---KLDEAEDLI 646 (730)
Q Consensus 570 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~ 646 (730)
-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-..+- +...+..+...+.-.| +.+-|.+++
T Consensus 137 l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666655553 3456677777777777777777777777776654211 4444455555443333 455666677
Q ss_pred HHHHH
Q 004791 647 VKMNR 651 (730)
Q Consensus 647 ~~m~~ 651 (730)
.+..+
T Consensus 215 ~~alk 219 (289)
T KOG3060|consen 215 ERALK 219 (289)
T ss_pred HHHHH
Confidence 76666
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00012 Score=63.86 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPT---VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAF 629 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l 629 (730)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777788777643 223 23333455677788888888888888887653332 2244556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
...+...|++++|+..++..... ......+...+.+|.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788888888888888664432 234566777888888888888888888764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.002 Score=58.72 Aligned_cols=188 Identities=16% Similarity=0.192 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCChh-hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 004791 427 KNVHRAMSLLNELLEQ---N-LSPTLI-TYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEE 501 (730)
Q Consensus 427 ~~~~~A~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 501 (730)
.+.++..+++.+++.. | ..++.. .|..++-+....|+.+.|...++++...- +-+...-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4455555555555432 2 333433 34455556667778888888888776653 2122222222223445688888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004791 502 AQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 502 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 581 (730)
|.++++.+++.++. |.+++-.-+...-..|+--+|++-+.+.++. +..|...|.-+...|...|++++|.-++++++-
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 88888888877643 6677776666777778877888888777765 367888888888888888888888888888886
Q ss_pred CCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCC
Q 004791 582 MGVKPTVYTYTILIEEVLKE---GDFDHAHRLLDQMVSLG 618 (730)
Q Consensus 582 ~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 618 (730)
.. |-++..+..+.+.+.-. .+++-|++.|.+.++..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 53 33455555555554433 35677888888888754
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.2e-05 Score=70.33 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=64.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYS 676 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~ 676 (730)
+.+.++|++|+..|.++++..+. |.+.|..-..+|.+.|.++.|++-.+..+. +.|. ..+|..|+.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 44566666677777666665433 555666666666777777777666666666 3343 5566666667777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004791 677 AFDVLKRMFDAGCEPSHHTYAFLIKHLS 704 (730)
Q Consensus 677 A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 704 (730)
|++.|++.++ +.|+..+|..=++...
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHHH
Confidence 7777666665 4666666665544443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00087 Score=65.34 Aligned_cols=175 Identities=15% Similarity=0.127 Sum_probs=100.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---------
Q 004791 526 DGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG--LYRERKVQEALLLVEKMTKMGVKPTVYTYTIL--------- 594 (730)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l--------- 594 (730)
.++...|+.++|...--.+++.+ ..+ .+..++.+ +.-.++.+.|...|++.+..+ |+...-..+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 34555677777777666666654 222 22222322 334566777777777766654 443322211
Q ss_pred ----HHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 004791 595 ----IEEVLKEGDFDHAHRLLDQMVSLG---LKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-SVTYTLLIC 666 (730)
Q Consensus 595 ----~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~ 666 (730)
.+-..+.|++.+|.+.|.+.+..+ .+++...|.....+..+.|+.++|+.-.++..+ +.+. ...|..-..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~ 329 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRAN 329 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHH
Confidence 233456778888888888777642 234555666666677778888888887777775 2232 233444445
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCC
Q 004791 667 AYAHLGLIYSAFDVLKRMFDAGCEP-SHHTYAFLIKHLSNKK 707 (730)
Q Consensus 667 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~l~~~~ 707 (730)
++...++|++|++-+++..+..-.+ ...++.....+|.+++
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 5666778888888887776532222 2234444444454443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.024 Score=56.43 Aligned_cols=463 Identities=15% Similarity=0.182 Sum_probs=221.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH--HH
Q 004791 178 LSKFHLVDEMKRVYLEMLDNMVVPN------IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILG--YC 249 (730)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~ 249 (730)
+.+.+++++|..+|.+..+.. ..+ ....+.++++|.. ++.+.....+....+.- | ...|-.+..+ +-
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 457889999999999988752 222 2334667788764 45666666666665542 2 2233333333 34
Q ss_pred hcCChhHHHHHHHhchhC--CCC------------cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCChhhH
Q 004791 250 RNKDVEKGFRVFMMMPKK--GCR------------RNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDD----CRPTVRTY 311 (730)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~--~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~ 311 (730)
+.+.+++|.+.+...... +.. +|-+.-+..++++...|++.+++.+++++..+= +.-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778999999888765543 211 122333567788888999999999888876543 33678888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004791 312 TVVIFGLCRVGRKSEALEFFNEMSARGCEPN-VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCK 390 (730)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 390 (730)
+.++-.+.+ ..|-++++.. .-| ..-|.-++-.|.+.=..-++.. | ..+.|.......++....-
T Consensus 171 d~~vlmlsr--------SYfLEl~e~~-s~dl~pdyYemilfY~kki~~~d~~~-Y-----~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSR--------SYFLELKESM-SSDLYPDYYEMILFYLKKIHAFDQRP-Y-----EKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhH--------HHHHHHHHhc-ccccChHHHHHHHHHHHHHHHHhhch-H-----HhhCcHHHHHHHHHHHHHh
Confidence 876666654 3444443221 111 1123344444443211111100 0 0011122222222221111
Q ss_pred C--CCHHHHHHHHHHHHhCCCCCChh-cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CChhhHHHHHHHHHhCCC
Q 004791 391 E--GLMEAALQILDLMKSNNCSPNAR-TYNELICGFCKRKNVHRAMSLLNELLEQNLS----PTLITYNSLIYGQCREGH 463 (730)
Q Consensus 391 ~--g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~ 463 (730)
. .+..--.++++.....-+.|+-. ....|...+.+ +.+++..+-+.+....+. --..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 01111122222222222233322 22223333322 333333333222221100 012355666666667777
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004791 464 LDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLER 543 (730)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 543 (730)
...|.+.+..+.-. .|+...-..+ --..+.+..+... |...++. ..+=+.+|+.
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kl----------lls~~~lq~Iv~~----DD~~~Tk----------lr~yL~lwe~ 367 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKL----------LLSPKVLQDIVCE----DDESYTK----------LRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhh----------hcCHHHHHHHHhc----chHHHHH----------HHHHHHHHHH
Confidence 77777766655543 2222211111 1112222222221 1111111 1122333443
Q ss_pred HHhCCCCCCHH-HHHHH---HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHH---HcCCHHHHHHHH
Q 004791 544 MLSDDCLPNSY-TYNAL---IDGLYRERK-VQEALLLVEKMTKMGVKPTVYTYTILIE----EVL---KEGDFDHAHRLL 611 (730)
Q Consensus 544 ~~~~~~~p~~~-~~~~l---i~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~l~~----~~~---~~g~~~~A~~~~ 611 (730)
....+ .|.. .-.-| ..-+.+.|. -++|+++++.+.+.. +-|...-|.+.. .|. ....+.+-..+-
T Consensus 368 ~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe 444 (549)
T PF07079_consen 368 IQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLE 444 (549)
T ss_pred HHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33332 1111 11111 222344444 566666666666532 233333333221 111 122333344444
Q ss_pred HHHHHCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 612 DQMVSLGLKP----DVYTYTAFIQA--YCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 612 ~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
+-+.+.|+.| +...-|.|.++ +..+|++.++.-.-.=+.+ +.|++.+|..++-++....++++|..++.++
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L- 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL- 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-
Confidence 4444556655 34445555554 4567888888776665655 6788888888888888888888888887764
Q ss_pred HcCCCCCHHHHHH
Q 004791 686 DAGCEPSHHTYAF 698 (730)
Q Consensus 686 ~~g~~p~~~~~~~ 698 (730)
+|+..++..
T Consensus 522 ----P~n~~~~ds 530 (549)
T PF07079_consen 522 ----PPNERMRDS 530 (549)
T ss_pred ----CCchhhHHH
Confidence 666666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00021 Score=72.25 Aligned_cols=89 Identities=19% Similarity=0.204 Sum_probs=38.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 314 VIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGL 393 (730)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 393 (730)
++..+...++..+|.+++.+.++..+. +..........+.+.++.+.|..+.+++.+..+. +..+|..|..+|.+.|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCC
Confidence 334444444444444444444433222 3333444444444444444444444444443211 33344444444444444
Q ss_pred HHHHHHHHHHH
Q 004791 394 MEAALQILDLM 404 (730)
Q Consensus 394 ~~~A~~~~~~m 404 (730)
++.|+-.++.+
T Consensus 284 ~e~ALlaLNs~ 294 (395)
T PF09295_consen 284 FENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcC
Confidence 44444444444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00032 Score=70.96 Aligned_cols=123 Identities=22% Similarity=0.256 Sum_probs=82.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004791 487 SVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRE 566 (730)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 566 (730)
..++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++.++.. +.+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555555667777777777777664 22 33446666666777777777777777653 44566666666667777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMV 615 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 615 (730)
++++.|+++.+++.+.. +.+..+|..|..+|...|+++.|+..++.+-
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777754 3455677777777777777777777777654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00051 Score=59.95 Aligned_cols=116 Identities=9% Similarity=0.087 Sum_probs=54.2
Q ss_pred cCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCChhH
Q 004791 181 FHLVDEMKRVYLEMLDNMVVP--NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPD--TFTYTSLILGYCRNKDVEK 256 (730)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~ 256 (730)
.++.+.+...++.+.+..... .......+...+...|++++|...|+.+......++ ....-.|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555566555542111 011233344555555666666666666655432221 1123334455555555555
Q ss_pred HHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 257 GFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRR 298 (730)
Q Consensus 257 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 298 (730)
|+..++...... .....+....+.|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554433222 2233444445555555555555555543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.8e-05 Score=49.51 Aligned_cols=31 Identities=55% Similarity=0.963 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 004791 276 YTNLIHGLCEAKRVDEALDLFRRMGEDDCRP 306 (730)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 306 (730)
||+++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444433
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.011 Score=57.90 Aligned_cols=91 Identities=16% Similarity=0.052 Sum_probs=62.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004791 492 TLCKRGRVEEAQVLFDSLEKKG---IKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERK 568 (730)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 568 (730)
-..+.|.+..|.+.|.+.+..+ ..++...|........+.|+.++|+.--++.++.+ +.-+..|..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888887654 33455667777777788889999888888877754 1112233333344556778
Q ss_pred HHHHHHHHHHHHhCC
Q 004791 569 VQEALLLVEKMTKMG 583 (730)
Q Consensus 569 ~~~A~~~~~~m~~~~ 583 (730)
+++|.+-|++..+..
T Consensus 337 ~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHhhc
Confidence 888888888877643
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.2e-05 Score=48.29 Aligned_cols=33 Identities=33% Similarity=0.604 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPS 692 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 692 (730)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777777677665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.034 Score=58.12 Aligned_cols=380 Identities=13% Similarity=0.128 Sum_probs=180.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHhchhC-CCCc--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 004791 235 SPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKK-GCRR--------NEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCR 305 (730)
Q Consensus 235 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 305 (730)
.|.+..|..+...-.+.-.++.|...|-+.... |++. +...-.+=+.+| -|++++|.++|-+|-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 477778888777776767777777766554331 1100 000111112222 377777777777765543
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004791 306 PTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE--PNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNA 383 (730)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 383 (730)
..|..+.+.|++-...++++.--. +.. .-...++.+.+.++....+++|.+.|..-.. . ..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~ 827 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---EN 827 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---Hh
Confidence 235556666777666665542110 000 0134667777777777777777777655321 1 12
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 004791 384 LIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGH 463 (730)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 463 (730)
.+.++.+..++++-..+-..+ +.+....-.+..++...|.-++|.+.+-+- +.+ ..-+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHHHH
Confidence 445555555554444333332 345566667777777777777777665432 111 123445566666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004791 464 LDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLER 543 (730)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 543 (730)
+.+|.++.+...- |...+ ++.- .|-+++++.. ...-|..+.+.|+.-+|-+++.+
T Consensus 894 W~~avelaq~~~l----~qv~t---liak--------~aaqll~~~~----------~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 894 WGEAVELAQRFQL----PQVQT---LIAK--------QAAQLLADAN----------HMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred HHHHHHHHHhccc----hhHHH---HHHH--------HHHHHHhhcc----------hHHHHHHhhhcccchhHHHHHHH
Confidence 7777766554321 11111 1110 0111111100 01123344556666666666666
Q ss_pred HHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004791 544 MLSD----DCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL 619 (730)
Q Consensus 544 ~~~~----~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 619 (730)
|.+. +.++-..--..++.++. ..+..++++-.+.....|...+... +...|-..++-.+.+..-.
T Consensus 949 mae~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--- 1017 (1189)
T KOG2041|consen 949 MAEREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--- 1017 (1189)
T ss_pred HhHHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---
Confidence 6543 22221111111111211 1222333333333333332222111 1122223333333332211
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 620 KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE-GIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
-.....+-.|..-....|..+.|...--.+.+. .+-|....|..|.-+-+....+-..-+.|-++.
T Consensus 1018 gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1018 GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 012334445555556678888887765555432 355667777777666555555555555554443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00052 Score=54.64 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH 670 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 670 (730)
+..++..+...|++++|...++++.+.... +...+..+..++...|++++|.+.+++..+.. +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555666667777777777776664322 33556666666777777777777777766643 2344566666777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 004791 671 LGLIYSAFDVLKRMFD 686 (730)
Q Consensus 671 ~g~~~~A~~~~~~m~~ 686 (730)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00068 Score=69.00 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=54.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
..+...|++++|+.+|+++++.. +.+...|..+..+|.+.|++++|+..++++++.... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 34455666666666666666654 345556666666666666666666666666664322 4555666666666666666
Q ss_pred HHHHHHHHHHH
Q 004791 641 EAEDLIVKMNR 651 (730)
Q Consensus 641 ~A~~~~~~m~~ 651 (730)
+|+..|++..+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666666665
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.4e-05 Score=59.34 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=46.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 601 EGDFDHAHRLLDQMVSLGLK-PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFD 679 (730)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 679 (730)
.|++++|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+ ..+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46667777777777664331 1344445566777777777777777766 2211 1123444455666777777777777
Q ss_pred HHHH
Q 004791 680 VLKR 683 (730)
Q Consensus 680 ~~~~ 683 (730)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6664
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0009 Score=57.20 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 669 (730)
....+...+...|++++|..+|+-+...++. +..-|..|.-++-..|++++|+..+......+ +.|+..+-.++.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344455556677777777777777665433 55566677777777777777777777777644 235666777777777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004791 670 HLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 670 ~~g~~~~A~~~~~~m~~ 686 (730)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00092 Score=56.10 Aligned_cols=96 Identities=20% Similarity=0.175 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLGLK-P-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD----SVTYTL 663 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ 663 (730)
++..++..+...|++++|.+.|+++.+.... + ....+..++.++.+.|++++|.+.++++.... |+ ...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHH
Confidence 4455666667777777777777777664321 0 13455567777777777777777777777632 22 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 664 LICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
++.++.+.|+.++|.+.++++++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777777777777777777765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.4e-05 Score=46.53 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMFDAGCEP 691 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 691 (730)
+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0022 Score=68.25 Aligned_cols=71 Identities=25% Similarity=0.161 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004791 622 DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTY 696 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 696 (730)
+...|..+.-.....|++++|...++++.+. .|+...|..++..+...|+.++|.+.+++... +.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 4455666655555667777777777777774 36666777777777777777777777777765 35554443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.6e-05 Score=46.79 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=12.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 004791 275 SYTNLIHGLCEAKRVDEALDLFRRMGEDDC 304 (730)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 304 (730)
+|+.++.+|++.|+++.|.++|++|.+.|+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 334444444444444444444444443333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00065 Score=54.07 Aligned_cols=91 Identities=23% Similarity=0.263 Sum_probs=44.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 638 (730)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++....... +...+..++..+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 3344444455555555555544432 223344444455555555555555555555543321 23344555555555555
Q ss_pred HHHHHHHHHHHHH
Q 004791 639 LDEAEDLIVKMNR 651 (730)
Q Consensus 639 ~~~A~~~~~~m~~ 651 (730)
+++|...+++..+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00051 Score=66.67 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTK----MGVK-PTVYTYTILIEEVLKEGDFDHAHRLLDQMVS----LGL-KPDVY 624 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 624 (730)
.|..|...|.-.|+++.|+...+.-++ .|-+ .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 566666677778888888877664332 2211 1245667788888888999999888876653 221 12455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNR----E-GIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
...+|.+.|.-...++.|+.++++-.. . +..-....+.+|..+|...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 667788888888888999888776432 1 1122466788899999999999999888776653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=67.39 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=54.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDF 604 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 604 (730)
...+...|++++|++.|+++++.+ +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 334455566666666666666554 3445555566666666666666666666666544 33555566666666666666
Q ss_pred HHHHHHHHHHHHC
Q 004791 605 DHAHRLLDQMVSL 617 (730)
Q Consensus 605 ~~A~~~~~~~~~~ 617 (730)
++|+..|+++++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00051 Score=64.39 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=50.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHA 607 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 607 (730)
+.+.+++.+|+..|.+.++.. +.|.+-|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 445566666666666666554 3445555555556666666666666555555543 22345566666666666666666
Q ss_pred HHHHHHHHH
Q 004791 608 HRLLDQMVS 616 (730)
Q Consensus 608 ~~~~~~~~~ 616 (730)
++.|++.++
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 666666655
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.011 Score=51.24 Aligned_cols=142 Identities=16% Similarity=0.143 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCCHHHHH
Q 004791 551 PNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL---KPDVYTYT 627 (730)
Q Consensus 551 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~ 627 (730)
|.+..--.|..+..+.|+..+|...|++...--...|....-.+.++....++...|...++++.+..+ .|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 555556667777777777777877777777644455677777777777777788888777777776431 233 344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
.+.+.|...|++.+|..-|+..... -|+...-......+.++|+.++|..-+..+.+. +.-+..+|+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~-~~r~~~H~r 231 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDT-AKRSRPHYR 231 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHhcchhHH
Confidence 5667777788888888888887773 466555555555677777777776655555432 233445554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0018 Score=54.33 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGV--KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFI 630 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 630 (730)
++..++..+.+.|++++|.+.++++.+... +.....+..+..++.+.|++++|.+.|+++....+.. ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555666666666666666665321 0113345556666677777777777777666542221 134556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 004791 631 QAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6677777777777777777664
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0031 Score=62.12 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=41.2
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhhC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hh-hH
Q 004791 280 IHGLCEA-KRVDEALDLFRRMGED----DCRPT--VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPN-----VH-TY 346 (730)
Q Consensus 280 i~~~~~~-g~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~-~~ 346 (730)
...|... |++++|++.|++..+. + .+. ..++..++..+.+.|++++|.++|+++.......+ +. .+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3344455 6666666666665431 1 111 22344555566666666666666666554322111 11 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 347 TVLIDCLCKENKVDEASELLNRMLE 371 (730)
Q Consensus 347 ~~li~~~~~~g~~~~A~~~~~~~~~ 371 (730)
...+-++...|+...|.+.+++...
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2222334445566666666665554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0017 Score=55.48 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004791 557 NALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI 636 (730)
Q Consensus 557 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 636 (730)
-.+...+...|++++|.++|+-+.... +-+..-|..|..++-..|++++|+..|..+...++. |...+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 344445556777777777777776654 345556666777777777777777777777776543 666777777777777
Q ss_pred CCHHHHHHHHHHHHH
Q 004791 637 GKLDEAEDLIVKMNR 651 (730)
Q Consensus 637 g~~~~A~~~~~~m~~ 651 (730)
|+.+.|.+-|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.12 Score=54.42 Aligned_cols=205 Identities=13% Similarity=0.113 Sum_probs=111.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCC--------CCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCC
Q 004791 200 VPNIYTFNTMINGCCKVGNVGEAELYVSKIVQA-GLS--------PDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCR 270 (730)
Q Consensus 200 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 270 (730)
.|....|..+.....+.-.++-|...|-+.... |++ .+...-.+=+.+| -|++++|.+++-+|.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 455566666666555555555555555443221 110 0000111112222 377888888887776632
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004791 271 RNEVSYTNLIHGLCEAKRVDEALDLFRRMGED-DCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVL 349 (730)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 349 (730)
..|..+.+.|++-...++++.-... +-..-..+|+.+...+.....+++|.+.|..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 2345566677776666665442111 0011234677777777777778888777764321 1235
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCH
Q 004791 350 IDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNV 429 (730)
Q Consensus 350 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 429 (730)
+.++.+..++++-+.+-..+.+ |....-.+.+++.+.|.-++|.+.|-+-- .| ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHH
Confidence 5666666666655554444333 55556667777777777777776654321 11 1334556666667
Q ss_pred HHHHHHHHH
Q 004791 430 HRAMSLLNE 438 (730)
Q Consensus 430 ~~A~~~~~~ 438 (730)
.+|.++-+.
T Consensus 895 ~~avelaq~ 903 (1189)
T KOG2041|consen 895 GEAVELAQR 903 (1189)
T ss_pred HHHHHHHHh
Confidence 777666543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0012 Score=67.17 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=54.8
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004791 271 RNEVSYTNLIHGLCEAKRVDEALDLFRRMGED--DCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTV 348 (730)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 348 (730)
.+.+....+++.+....+++++..++-+.... ....-..|..++++.|.+.|..++++++++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444444555555555555555555444432 1111122334555555555555555555555445555555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004791 349 LIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDG 387 (730)
Q Consensus 349 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 387 (730)
|++.+.+.|++..|.++...|...+...+..|+..-+.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS 182 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 555555555555555555554444433344444333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0016 Score=63.85 Aligned_cols=128 Identities=6% Similarity=0.031 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCK-VGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYC 249 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 249 (730)
|-.+++..-+.+..+.|+.+|.++.+.+ ..+...|......-.+ .++.+.|..+|+...+. +..+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4444444444444555555555554322 1112222222222122 23333355555554443 2334444444444444
Q ss_pred hcCChhHHHHHHHhchhCCCCcC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004791 250 RNKDVEKGFRVFMMMPKKGCRRN---EVSYTNLIHGLCEAKRVDEALDLFRRMGE 301 (730)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (730)
+.|+.+.|+.+|++.... ++.+ ...|...+..-.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555444432 1111 12444444444444444444444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.002 Score=63.11 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR-ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEV 598 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 598 (730)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.+ .++.+.|.++|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555555332 1222333333333222 33444455555555543 234445555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 599 LKEGDFDHAHRLLDQMVSLGLKPD---VYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
...|+.+.|+.+|++.+.. +.++ ...|...+..-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 1111 12455555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0039 Score=56.26 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT--VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
..+..+...+...|++++|...|++.++....+. ...+..+...+.+.|++++|...+++.++.... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455555566666666777666666665321111 245556666666666666666666666654322 3445555555
Q ss_pred HHHhcCCHHHHH
Q 004791 632 AYCSIGKLDEAE 643 (730)
Q Consensus 632 ~~~~~g~~~~A~ 643 (730)
++...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 666655544444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0021 Score=57.87 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLI 665 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 665 (730)
...|..++..+...|++++|+..|++.+.....+ ...+|..+..++...|++++|+..+++..+.. +....++..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555666666777777777777776543222 23466677777777777777777777777632 22344555555
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 004791 666 CAYA-------HLGLIYSAFDVLKRM 684 (730)
Q Consensus 666 ~~~~-------~~g~~~~A~~~~~~m 684 (730)
..+. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 5555 667777555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00011 Score=44.33 Aligned_cols=26 Identities=42% Similarity=0.862 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004791 276 YTNLIHGLCEAKRVDEALDLFRRMGE 301 (730)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (730)
|++++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=66.85 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=66.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004791 307 TVRTYTVVIFGLCRVGRKSEALEFFNEMSAR--GCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNAL 384 (730)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 384 (730)
+......+++.+....+.+++..++-+.... ....-..|..++++.|.+.|..+++..++..=...|+.||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444444555555555555565555555433 11122344456666666666666666666666666666666666666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhc
Q 004791 385 IDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKR 426 (730)
Q Consensus 385 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 426 (730)
++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666665555444555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0022 Score=62.49 Aligned_cols=285 Identities=14% Similarity=0.059 Sum_probs=145.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCCCHHHHHHHHHHH--Hh--CC-CCCChhcHHHHHH
Q 004791 351 DCLCKENKVDEASELLNRMLEKGLFPNV----VTYNALIDGYCKEGLMEAALQILDLM--KS--NN-CSPNARTYNELIC 421 (730)
Q Consensus 351 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m--~~--~~-~~~~~~~~~~li~ 421 (730)
.-+|+.|+......+|+..++.|.. |. .+|..|..+|.-.+++++|+++...= .. .| -.-...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578889999999999998888754 33 34555666677777888887765321 11 11 0112334444555
Q ss_pred HHHhcCCHHHHHHHHHHHH----HCCC-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 004791 422 GFCKRKNVHRAMSLLNELL----EQNL-SPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKR 496 (730)
Q Consensus 422 ~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 496 (730)
.+--.|.+++|+..-.+-+ +.|- ......+..+...|...|+.-... .-.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-----------
Confidence 5555666777665433221 2111 112233444555555444311000 0000011111110
Q ss_pred CCHHHHHHHHHHHHH----cCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhc
Q 004791 497 GRVEEAQVLFDSLEK----KGIK-AGEVIYTALIDGYCKEGKIDDAHSLLERMLS----DDC-LPNSYTYNALIDGLYRE 566 (730)
Q Consensus 497 g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~li~~~~~~ 566 (730)
..++.|.++|.+-++ .|-. .--..|..|.+.|.-.|+++.|+...+.-+. -|- ......+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 012223333322111 1100 0113455666666667777777665554322 110 01223556666677777
Q ss_pred CCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhc
Q 004791 567 RKVQEALLLVEKMT----KMGV-KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL-----GLKPDVYTYTAFIQAYCSI 636 (730)
Q Consensus 567 ~~~~~A~~~~~~m~----~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~ 636 (730)
|+++.|.+.|+... +.|- ........+|...|.-..++++|+.++.+-+.. +..-....+.+|..++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 77777777776543 2221 123344556677777777777777777655431 1122455677777777777
Q ss_pred CCHHHHHHHHHHHHH
Q 004791 637 GKLDEAEDLIVKMNR 651 (730)
Q Consensus 637 g~~~~A~~~~~~m~~ 651 (730)
|..+.|+.+.+.-++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777777665543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.037 Score=52.84 Aligned_cols=77 Identities=8% Similarity=-0.013 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIY--TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILG 247 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 247 (730)
+-.....+.+.|++++|+..|+++...-+.+... ..-.++.++.+.+++++|...+++.++..+......+...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3344455566788888888888887753322111 1234566777888888888888888776443333333333333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.006 Score=55.07 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN--SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
.+..+...+...|++++|...|++.++....+. ...+..+...+.+.|++++|...+++.++.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555555566666666666666554321111 2445555555666666666666666665542 2234444555555
Q ss_pred HHHcCCHHHHH
Q 004791 598 VLKEGDFDHAH 608 (730)
Q Consensus 598 ~~~~g~~~~A~ 608 (730)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 55555544433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00024 Score=55.15 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=33.1
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHH
Q 004791 217 GNVGEAELYVSKIVQAGLS-PDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDL 295 (730)
Q Consensus 217 g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 295 (730)
|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+. .+....-.+..++.+.|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455555555555544321 1222333345555555555555555544 11110 1122222334445555555555555
Q ss_pred HH
Q 004791 296 FR 297 (730)
Q Consensus 296 ~~ 297 (730)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0066 Score=64.66 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 571 EALLLVEKMTKM-GVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKM 649 (730)
Q Consensus 571 ~A~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 649 (730)
.+.+..++.... ..+.+...|..+.-.....|++++|...++++++.+ |+...|..++..+...|+.++|.+.+++.
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444443332 123456677777767777888999999999888864 57778888888888899999999999888
Q ss_pred HHCCCCCCHHHH
Q 004791 650 NREGIVPDSVTY 661 (730)
Q Consensus 650 ~~~g~~~~~~~~ 661 (730)
.. +.|...+|
T Consensus 480 ~~--L~P~~pt~ 489 (517)
T PRK10153 480 FN--LRPGENTL 489 (517)
T ss_pred Hh--cCCCCchH
Confidence 87 44654454
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00018 Score=43.26 Aligned_cols=28 Identities=54% Similarity=0.994 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004791 380 TYNALIDGYCKEGLMEAALQILDLMKSN 407 (730)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (730)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0037 Score=61.58 Aligned_cols=96 Identities=18% Similarity=0.268 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----C
Q 004791 590 TYTILIEEVLKE-GDFDHAHRLLDQMVSL----GLKP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-----D 657 (730)
Q Consensus 590 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-----~ 657 (730)
.+..+...|... |++++|++.|+++.+. + .+ -..++..++..+.+.|++++|.++|++....-... +
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 344455566666 7888888888877752 2 11 13345667777888888888888888887643221 1
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 658 S-VTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 658 ~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
. ..+...+-++...|+...|.+.+++...
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 2233444566677888888888888764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.002 Score=50.97 Aligned_cols=77 Identities=17% Similarity=0.355 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChhhHHH
Q 004791 278 NLIHGLCEAKRVDEALDLFRRMGEDDC-RPTVRTYTVVIFGLCRVG--------RKSEALEFFNEMSARGCEPNVHTYTV 348 (730)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~ 348 (730)
..|.-+...|++.....+|+.++..|+ .|++.+|+.++.+.++.. +.-+.+.+|+.|+..+.+|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344444455666666666666666665 566666666655555432 22334555555555555555555555
Q ss_pred HHHHHH
Q 004791 349 LIDCLC 354 (730)
Q Consensus 349 li~~~~ 354 (730)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0081 Score=56.95 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHH
Q 004791 585 KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI---GKLDEAEDLIVKMNREGIVPDSVTY 661 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~ 661 (730)
+-|...|..|...|...|+++.|..-|.+..+... ++...+..+..++..+ ....++..+|+++...+ +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 44566666666666666666666666666665422 2444555555544322 13455666666666643 2245555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 662 TLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 662 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
..|...+...|++.+|...|+.|++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55666666666666666666666654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0043 Score=49.14 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 627 TAFIQAYCSIGKLDEAEDLIVKMNREGI-VPDSVTYTLLICAYAHLG--------LIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 627 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
...|.-+...|++.....+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555566888888888888888888 788888888877655432 3446677899999888999999999
Q ss_pred HHHHHHHcC
Q 004791 698 FLIKHLSNK 706 (730)
Q Consensus 698 ~l~~~l~~~ 706 (730)
.++..|.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999888764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.009 Score=56.65 Aligned_cols=129 Identities=16% Similarity=0.114 Sum_probs=102.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHH
Q 004791 533 KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG---DFDHAHR 609 (730)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~ 609 (730)
..+....-++.-+..+ |.|...|..|...|...|+...|..-|.+..+.. +++...+..+..++..+. ...++.+
T Consensus 137 ~~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3555555566555555 7789999999999999999999999999999865 578888888888776543 4678999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 610 LLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLIC 666 (730)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 666 (730)
+|++++..+.. |......|...+...|++.+|...|+.|.+.. |....+..++.
T Consensus 215 ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 215 LLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 99999997644 77788888899999999999999999999964 44444555544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00076 Score=49.85 Aligned_cols=62 Identities=26% Similarity=0.371 Sum_probs=34.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004791 635 SIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFL 699 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 699 (730)
+.|++++|+++|+++.+.. +-+...+..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4556666666666665532 224555555666666666666666666666543 4554444443
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.064 Score=46.73 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=32.2
Q ss_pred cCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004791 166 LSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQ 231 (730)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 231 (730)
|++..--.|..++.+.|+..+|...|++.+.--+.-|......+.++....+++..|...++++-+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 344444444555555555555555555555433333444444444555555555555555554444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.082 Score=50.48 Aligned_cols=59 Identities=5% Similarity=-0.043 Sum_probs=30.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 279 LIHGLCEAKRVDEALDLFRRMGEDDCRPTVRT---YTVVIFGLCRVGRKSEALEFFNEMSARG 338 (730)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~ 338 (730)
....+.+.|++++|.+.|+++...... +... .-.++.++.+.+++++|...+++.++..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 344445556666666666666554211 1111 1234455566666666666666666553
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0064 Score=54.67 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 004791 273 EVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRP--TVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLI 350 (730)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 350 (730)
...|..++..+...|++++|...|++.......+ ...+|..+...+...|++++|++.++........ ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 3445556666666666666666666665442111 1235666666666677777777776666654222 234444444
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 004791 351 DCLC-------KENKVDEASELLN 367 (730)
Q Consensus 351 ~~~~-------~~g~~~~A~~~~~ 367 (730)
..+. ..|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 4444 4555554443333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=48.18 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=33.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
...+...|++++|.+.|+++++.. +-+...+..++.++...|++++|..+|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666666666643 22455566666666666666666666666654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.015 Score=48.06 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=44.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 004791 595 IEEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD----SVTYTLLICAY 668 (730)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~ 668 (730)
..++-..|+.++|+.+|++.+..|+..+ ...+..+...+...|++++|..++++..... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3344455556666666665555554432 2234445555556666666666666555431 22 12222233345
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004791 669 AHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 669 ~~~g~~~~A~~~~~~m~ 685 (730)
...|+.++|++.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55566666666555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.02 Score=47.31 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=61.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPT--VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAYC 634 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~ 634 (730)
+..++-..|+.++|+.+|++.+..|.... ...+-.+...+...|++++|..++++.....+.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455567888888888888877765443 3455566777788888888888888877642221 1222333445667
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004791 635 SIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~ 651 (730)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 78888888888776654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.098 Score=48.30 Aligned_cols=139 Identities=12% Similarity=0.061 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----H
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTI-----L 594 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-----l 594 (730)
+.+.++..+.-.|.+.-...++++.++.+.+.++.....|++.-.+.|+.+.|...|+...+..-..|..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566666666777777777888877766566777777777777788888888888886654322233333333 3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004791 595 IEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTY 661 (730)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 661 (730)
...+.-++++..|...+.+....+.. |....|.-.-++.-.|+..+|++.++.|++. .|...+-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchh
Confidence 34455677888888888888876533 5656666555666678899999999999884 4544333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0014 Score=47.93 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=38.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
+...+...|++++|++.|+++++..+. +...+..+..++...|++++|..+|+++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777777777777777765422 566677777777777777777777777765
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0014 Score=48.61 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 004791 623 VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG-LIYSAFDVLKRMFD 686 (730)
Q Consensus 623 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 686 (730)
...|..++..+...|++++|+..|++.++.+ +.+...|..++.+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444555555555555555555555555532 113444555555555555 45555555555443
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.21 Score=53.89 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=105.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcCh--hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNE--VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGL 318 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 318 (730)
...-++.+++...++-|+.+.+.-.. .++. .......+-+.+.|++++|...|-+-...- .| ..+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHh
Confidence 34456667777777777776654322 1221 123334445567888888888877665431 22 1245555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 004791 319 CRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAAL 398 (730)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 398 (730)
....+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6666666777777888888776 66667778888888888877666655543 2211 112344566666677777776
Q ss_pred HHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 399 QILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNEL 439 (730)
Q Consensus 399 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 439 (730)
.+-..... +......+ +-..+++++|++.+..+
T Consensus 484 ~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 65544332 22222333 33457778887777654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.2 Score=46.40 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=120.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004791 532 GKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLL 611 (730)
Q Consensus 532 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 611 (730)
...+..+++|++-.. .+.+.++..+.-.+.+.-...++++.++...+.++.....++..-.+.|+.+.|...|
T Consensus 163 ~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf 235 (366)
T KOG2796|consen 163 LAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYF 235 (366)
T ss_pred cchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 333555666665432 3456677777778889999999999999776778889999999999999999999999
Q ss_pred HHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 612 DQMVSLGLKPD-----VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 612 ~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
++..+..-..| ..+.......|.-+.++.+|...+.+....+ +.|+...|.-.-+..-.|+..+|++.++.|.+
T Consensus 236 ~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 236 QDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 97765322222 3333344445667788999999999988754 34666666666666667999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHc
Q 004791 687 AGCEPSHHTYAFLIKHLSN 705 (730)
Q Consensus 687 ~g~~p~~~~~~~l~~~l~~ 705 (730)
. .|...+-++++-.|+.
T Consensus 315 ~--~P~~~l~es~~~nL~t 331 (366)
T KOG2796|consen 315 Q--DPRHYLHESVLFNLTT 331 (366)
T ss_pred c--CCccchhhhHHHHHHH
Confidence 4 6777776666655554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0015 Score=48.23 Aligned_cols=61 Identities=31% Similarity=0.530 Sum_probs=38.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004791 599 LKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYT 662 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 662 (730)
...|++++|+++|+++.+..+. +...+..++.+|.+.|++++|.++++++... .|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 3566777777777777665433 5666667777777777777777777777763 35543333
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.35 Score=48.37 Aligned_cols=146 Identities=18% Similarity=0.278 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 004791 553 SYTYNALIDGLYRERKVQEALLLVEKMTKMG-VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTY-TAFI 630 (730)
Q Consensus 553 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~ 630 (730)
..+|...+....+....+.|..+|-+..+.+ +.+++.++++++..++ .|+..-|..+|+--+.. -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777777777778888888888888777 5677778888887665 57778888888766654 2343333 3455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNREGIVPD--SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLS 704 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 704 (730)
.-+...++-+.|..+|+..++. +..+ ...|..++.-=..-|+...+..+=++|.+. .|...+-..+.+.+.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 5666778888888888866543 2223 567777887777888888888887877763 565555555554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0024 Score=47.24 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG-KLDEAEDLIVKMNR 651 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 651 (730)
+..+|..++..+...|++++|+..|++.++.+.. +...|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5678999999999999999999999999997543 7778999999999999 79999999999887
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.023 Score=54.63 Aligned_cols=99 Identities=14% Similarity=0.011 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGI--VPDSVTYTLL 664 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l 664 (730)
..|...+..+.+.|++++|...|+.+++..+... ...+..++.+|...|++++|...|+++.+..- ......+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3344444444556777777777777776532211 24566777777777888888888877776320 1124455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 004791 665 ICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
+..+...|+.++|.++|+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777778888888888877764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.38 Score=47.86 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=61.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 310 TYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYC 389 (730)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 389 (730)
+.+..|.-+...|+...|.++-.+.. -|+...|...+.+++..+++++-..+-.. + -++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 34444555556666666666644432 24666666666777777776655544321 1 14466666666666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 004791 390 KEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLL 436 (730)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 436 (730)
+.|+..+|..+... ..+..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHH
Confidence 77776666666554 12244556666666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.018 Score=51.93 Aligned_cols=103 Identities=23% Similarity=0.377 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004791 551 PNSYTYNALIDGLYR-----ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYT 625 (730)
Q Consensus 551 p~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 625 (730)
.+-.+|..+++.+.+ .|..+=....+..|.+.|+..|..+|+.|++.+=+ |.+ .|.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc-H
Confidence 566777777777653 35555566666777777777777777777766543 221 1111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 672 (730)
+.++..-|- .+-+-|++++++|...|+-||..++..|+..+.+.+
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 112211121 234668888888888888888888888888876655
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.013 Score=52.84 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004791 325 SEALEFFNEMSARGCEPNVHTYTVLIDCLCK 355 (730)
Q Consensus 325 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 355 (730)
+-|++++++|...|+-||..++..+++.+.+
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 3455555555555555555555555555533
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.49 Score=47.59 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=82.6
Q ss_pred HHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004791 118 LLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDN 197 (730)
Q Consensus 118 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (730)
+|.+.+++.+|+.++..+.+....... .|. ..+..+.++++|... ..+.......+..+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f------~lk-------------eEvl~grilnAffl~-nld~Me~~l~~l~~~ 74 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPF------LLK-------------EEVLGGRILNAFFLN-NLDLMEKQLMELRQQ 74 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchH------HHH-------------HHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 466888999999888887654322111 011 012344566666543 344444444444432
Q ss_pred CCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHC--CCC------------CCHHhHHHHHHHHHhcCChhHHHHHH
Q 004791 198 MVVPNIYTFNTMING--CCKVGNVGEAELYVSKIVQA--GLS------------PDTFTYTSLILGYCRNKDVEKGFRVF 261 (730)
Q Consensus 198 ~~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~~~ 261 (730)
.| ...|-.+..+ +.+.+.+.+|.+.+..-... +.. +|.+.-+..++.+...|++.+++.++
T Consensus 75 --~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iL 151 (549)
T PF07079_consen 75 --FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAIL 151 (549)
T ss_pred --cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 22 2233333333 34677888887777665443 211 12223356677888899999999888
Q ss_pred HhchhCC----CCcChhhHHHHHHHHHh
Q 004791 262 MMMPKKG----CRRNEVSYTNLIHGLCE 285 (730)
Q Consensus 262 ~~m~~~~----~~~~~~~~~~li~~~~~ 285 (730)
++|...= ..-+..+|+.++-.+.+
T Consensus 152 n~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 152 NRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 8776533 33678888876666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.63 Score=48.73 Aligned_cols=185 Identities=16% Similarity=0.080 Sum_probs=102.9
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 526 (730)
+..+|..-+.-....|+.+.+.-++++..-- +..-...|-..+.-....|+.+-|..++....+...+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4456777777777788888887777766532 111223344445555555887777777766665543322222222222
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHH-----H
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPNSY-TYNALIDGLYRERKVQEAL---LLVEKMTKMGVKPTVYTYTILIE-----E 597 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~---~~~~~m~~~~~~~~~~~~~~l~~-----~ 597 (730)
..-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. +++..... | .-+..+...+.- .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHH
Confidence 2334678888888888887753 4432 2222334445667777766 33333222 1 122222222221 2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
+.-.++.+.|..++.++.+. ..++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23457788888888888775 3446667777777665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.085 Score=54.85 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHH
Q 004791 169 KGYNTLLMQLSKFHLVDEMKRV 190 (730)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~ 190 (730)
+.+.+=+..|...|.+++|.++
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~i 578 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQI 578 (1081)
T ss_pred ccccccchhhhhccchhhhhcc
Confidence 3455555667778888877654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.075 Score=49.34 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=25.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 280 IHGLCEAKRVDEALDLFRRMGEDDC--RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSAR 337 (730)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (730)
...+...|++++|.+.|+.+..... +--....-.++.++.+.|++++|...++..++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3334445555555555555544310 111223334455555555555555555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.13 Score=47.85 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=38.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004791 174 LLMQLSKFHLVDEMKRVYLEMLDNMVVP--NIYTFNTMINGCCKVGNVGEAELYVSKIVQAG 233 (730)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g 233 (730)
....+.+.|++++|...|+++...-+.. -..+.-.++.++.+.|++++|...+++.++.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344556788888888888887653221 12245566777778888888888888877653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.66 Score=46.56 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 004791 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDD-CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYT-YTILI 595 (730)
Q Consensus 518 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~l~ 595 (730)
..+|..+++...+..-++.|..+|-++.+.+ ..+++..+++++..++ .|+..-|..+|+--... -||... -+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3567777777777777888888888888776 4577778888887665 56777788888765543 234333 34566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 596 EEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669 (730)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 669 (730)
..+...++-+.|..+|+..+.. +..+ ...|..++.--..-|+...|..+=++|.+ +.|...+.....+-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 6677788888888888866543 1222 45778888777788888888887777776 4455544444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.062 Score=46.89 Aligned_cols=116 Identities=26% Similarity=0.292 Sum_probs=72.3
Q ss_pred HhcCCHHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 564 YRERKVQEALLLVEKMTKM--G-VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 564 ~~~~~~~~A~~~~~~m~~~--~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
...++.+.+...++++... | +-++... ..-.....+.++.+. ..+...++..+...|+++
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-HH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCHH
Confidence 4567777788877777752 2 1111110 111222233333332 235566777888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHHH
Q 004791 641 EAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF-----DAGCEPSHHTYA 697 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 697 (730)
+|..+++++.... +-|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-.
T Consensus 80 ~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 80 EALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 9999999999854 3478899999999999999999999998874 469999887644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.65 Score=45.72 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=63.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcC
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLS--DDCLPNSYTYNALIDGLYRER 567 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~li~~~~~~~ 567 (730)
...+.+.|+..++-.+++.+-+..+.|+ ++... .+.+.|+ .++.-+++..+ .-.+.+..+...+..+-...|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPD--IALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChH--HHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 3456667777777777777766644433 22222 2233343 23333322221 111334555555666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHC
Q 004791 568 KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK-EGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 568 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 617 (730)
++..|..--+...+. .|....|..|.+.-.. .|+-.++...+.+.++.
T Consensus 344 e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 344 EFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 666666655555543 4666666666555443 36777777777666654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.97 Score=47.41 Aligned_cols=184 Identities=13% Similarity=0.097 Sum_probs=119.9
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHH
Q 004791 481 PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCL--PNSYTYNA 558 (730)
Q Consensus 481 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ 558 (730)
++..+|...+..-...|+.+...-+|++..-. ...=...|-..+.-....|+.+-|..++....+--++ |....+.+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 34678888888889999999999999987642 1112345666666666679999988888776654332 33333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHHHHCCCCCCHHHHHHH----H
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTV-YTYTILIEEVLKEGDFDHAH---RLLDQMVSLGLKPDVYTYTAF----I 630 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l----~ 630 (730)
.+ .-..|++..|..+++...+.- |+. ..-..-+....+.|+.+.+. +++....... . +......+ .
T Consensus 374 ~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~-~-~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 374 RF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK-E-NNGILEKLYVKFA 447 (577)
T ss_pred HH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc-c-CcchhHHHHHHHH
Confidence 32 234789999999999998753 443 33333455667888888887 4443333221 1 22222222 2
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 631 Q-AYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672 (730)
Q Consensus 631 ~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 672 (730)
+ .+.-.++.+.|..++.+|.+. ++++...|..+++.+...+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 1 234467899999999999985 3567888888888776665
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.49 Score=47.50 Aligned_cols=163 Identities=17% Similarity=0.126 Sum_probs=84.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDD---CLPNSYTYNALIDGLYR---ERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
.++-.|....+++..+++.+.+.... +......--...-++.+ .|+.++|+.++..+....-.++..+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33334555556666666666555431 00111111122233334 5666666666666443333555666665555
Q ss_pred HHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH----HHHHHCCC---CC
Q 004791 597 EVLK---------EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL----DEAEDLI----VKMNREGI---VP 656 (730)
Q Consensus 597 ~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~----~~m~~~g~---~~ 656 (730)
.|-. ....++|++.|.+.-+. .||...=-.++..+...|.. .+..++- ..+.++|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 4421 12367777777777664 34443322333333333421 1222222 11223332 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 657 DSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
|...+.+++.++.-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 5566677888888899999999999999865
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.011 Score=44.17 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=27.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 632 AYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.|.+.+++++|.+.++++...+ +.+...|...+.++.+.|++++|.+.+++.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555555555555555532 22344444555555555555555555555554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.13 Score=52.30 Aligned_cols=113 Identities=16% Similarity=0.065 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLI 646 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 646 (730)
....+|.++-++..+.+ +.|......+..+....++++.|...|++....++. ...+|......+.-.|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567778888888877 678888888888888888899999999999886533 4556777777778889999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 647 VKMNREGIVPD---SVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 647 ~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
++..+ +.|. .......++.|+..+ .++|+++|-+-
T Consensus 396 ~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 396 DKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 99777 4464 333444455666654 67787776553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.87 Score=44.91 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=53.7
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH--HHhCCCHHHHHHHHHHHHhCCCCCChhcH--HHH
Q 004791 346 YTVLIDCLCK--ENKVDEASELLNRMLEKGLFPNVVTYNALIDG--YCKEGLMEAALQILDLMKSNNCSPNARTY--NEL 419 (730)
Q Consensus 346 ~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~l 419 (730)
|..|-.++.. .|+-..|.++-.+..+. +..|......|+.+ -.-.|+++.|.+-|+.|... |..... ..|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 5555444433 45555665555443321 22233333333322 22346666666666666542 111111 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 004791 420 ICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLI 474 (730)
Q Consensus 420 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 474 (730)
.-.--+.|..+.|..+-+...+.- +.-...+...+...|..|+++.|+++.+.-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 111123455555555544444331 112234445555555555555555555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.015 Score=43.48 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=35.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 596 EEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
..|.+.+++++|.++++.++..++. +...|.....++.+.|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666666666666666665433 5555666666666666777777666666663
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.072 Score=51.28 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK--PDVYTYT 627 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~ 627 (730)
..|...+..+.+.|++++|...|+.+++.. |+ ...+..++..|...|++++|...|+++++..+. .....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 345555554456688888888888888753 33 346677888888888888888888888864221 1244455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
.++.++...|+.++|.++++++.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667777888888888888888874
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.67 Score=48.58 Aligned_cols=99 Identities=21% Similarity=0.297 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR 320 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 320 (730)
+.+=+..|...|.+++|.++-- .| .....|..|.......=+++-|.+.|.+.+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iac----lg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------------ 614 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIAC----LG--VTDTDWRELAMEALEALDFETARKAYIRVRDL------------------ 614 (1081)
T ss_pred ccccchhhhhccchhhhhcccc----cc--eecchHHHHHHHHHhhhhhHHHHHHHHHHhcc------------------
Confidence 3333445566677666654321 11 12223444544444444555555555444322
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 321 VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNR 368 (730)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 368 (730)
.+-+-+.-++++.++|-.|+... +...++-.|++.+|-++|.+
T Consensus 615 --~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 --RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred --HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 12233344566777776666533 34455566777777777654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0089 Score=45.49 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNRE--GIVP---D-SVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
+|+.+..+|...|++++|++.+++..+. ...+ + ..++..++.+|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666665532 0111 1 3455666666666666666666666654
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.013 Score=44.55 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLK-PD-VYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.+|+.+...|...|++++|++.|++.++. |.. |+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666666666666666666542 111 11 44566677777777777777777776553
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.12 Score=45.06 Aligned_cols=126 Identities=26% Similarity=0.357 Sum_probs=75.8
Q ss_pred HHHHHHHHH---HHHhcCChhHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004791 518 EVIYTALID---GYCKEGKIDDAHSLLERMLSD--D-CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTY 591 (730)
Q Consensus 518 ~~~~~~li~---~~~~~g~~~~A~~~~~~~~~~--~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 591 (730)
...|..++. .....|+.+.+...++++... | .-++... ..-.......++.+. ..+.
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~~ 65 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDAL 65 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHHH
Confidence 344445532 335678888999988888874 2 1111111 011112222222221 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR-----EGIVPDSVTY 661 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 661 (730)
..++..+...|++++|..+.++++...+- |...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 56677788899999999999999986533 788899999999999999999999988753 4888876653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.063 Score=46.39 Aligned_cols=88 Identities=14% Similarity=0.005 Sum_probs=49.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 282 GLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 282 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 361 (730)
-+...|++++|..+|+-+...+ +-+..-|..|..++-..+++++|+..|......+.. |...+.....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3445566666666666655443 224444555555555566666666666555444332 44445555566666666666
Q ss_pred HHHHHHHHHH
Q 004791 362 ASELLNRMLE 371 (730)
Q Consensus 362 A~~~~~~~~~ 371 (730)
|+..|+..++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6666666555
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.37 Score=41.78 Aligned_cols=86 Identities=15% Similarity=0.011 Sum_probs=42.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 564 YRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 564 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 643 (730)
...|++++|..+|.-+...+ +-+..-+..|..++-..+++++|+..|......+.. |...+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 34555555555555554433 233344444455555555555555555554443321 3333444445555555555555
Q ss_pred HHHHHHHH
Q 004791 644 DLIVKMNR 651 (730)
Q Consensus 644 ~~~~~m~~ 651 (730)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.1 Score=51.67 Aligned_cols=96 Identities=19% Similarity=0.137 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-SVTYTLLIC 666 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~ 666 (730)
..++..+..++.+.+++.+|++..++.+..+. +|......-..+|...|+++.|+..|+++++ +.|+ ..+-+.|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 34567778888899999999999999988763 4777888888899999999999999999998 4564 444445555
Q ss_pred HHHhcCCH-HHHHHHHHHHHH
Q 004791 667 AYAHLGLI-YSAFDVLKRMFD 686 (730)
Q Consensus 667 ~~~~~g~~-~~A~~~~~~m~~ 686 (730)
.-.+.... +...++|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 44444433 334667777764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.054 Score=54.90 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004791 585 KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV---YTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTY 661 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 661 (730)
+.+...++.+..+|.+.|++++|+..|++.++.++. +. .+|..+..+|...|+.++|++.++++++.+ .+ .|
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 456888999999999999999999999999986433 22 458999999999999999999999999842 12 12
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 004791 662 TLLIC--AYAHLGLIYSAFDVLKRMFDAGC 689 (730)
Q Consensus 662 ~~l~~--~~~~~g~~~~A~~~~~~m~~~g~ 689 (730)
..+.. .+....+.++..++++.+.+.|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 21111 11112233456666776766654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.5 Score=44.09 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 622 DVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
|-..+.+++.++.-.|+.+.|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4555667888888899999999999999874
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.09 E-value=2.7 Score=45.36 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+... .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34445555667788888887776654 4788888888888888888888777665543 1334666778888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 635 SIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVL 681 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 681 (730)
+.|+.+||.+++-+.... . -.+.+|.+.|++.+|.+.-
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 899999998887765421 1 4566778888888887654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.42 Score=48.77 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 569 VQEALLLVEKMTK-MGVKPT-VYTYTILIEEVLK---------EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 569 ~~~A~~~~~~m~~-~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
.+.|..+|.+... ..+.|+ ...|..+..++.. ..+..+|.++-++.++.+.. |......+..++...|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 4456666666661 112232 3444444333321 23567888999999998744 8888888888888889
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCChhhh
Q 004791 638 KLDEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSH---HTYAFLIKHLSNKKVDER 711 (730)
Q Consensus 638 ~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~l~~~~~~e~ 711 (730)
+++.|..+|++.... .|| ..+|......+...|+.++|.+.+++.++. .|-. ......++.|+..+..+.
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNPLKNN 426 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCchhhh
Confidence 999999999999984 575 677888888889999999999999997653 4533 223333446666655443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1 Score=42.98 Aligned_cols=148 Identities=22% Similarity=0.212 Sum_probs=92.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCH
Q 004791 210 INGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRV 289 (730)
Q Consensus 210 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 289 (730)
.......|++.+|...|......... +...--.++.+|...|+++.|..+++.+....-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34456778888899888888876433 34556667888888899999999888887633222222222234444454444
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHH
Q 004791 290 DEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSAR--GCEPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 290 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~ 361 (730)
.+...+-.+.-.. +.|...-..+...+...|+.++|++.+-.++++ |.. |...-..++..+.-.|.-+.
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCH
Confidence 4444444444332 336666667777888888888888777666554 333 55666667776666664443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.31 Score=48.45 Aligned_cols=96 Identities=18% Similarity=0.104 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004791 274 VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCL 353 (730)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 353 (730)
.+++.+..++.+.+++.+|++.-.+....+ ++|+...---..++...|+++.|+..|+.+++..+. |-.+-+.++.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 356666777777777777777777776665 456666666667777777777777777777765333 333334444433
Q ss_pred HhcCCHH-HHHHHHHHHHH
Q 004791 354 CKENKVD-EASELLNRMLE 371 (730)
Q Consensus 354 ~~~g~~~-~A~~~~~~~~~ 371 (730)
-+..+.. ...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333322 33555555544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.22 Score=47.71 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYN----ALIDGLYRERKVQE 571 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~li~~~~~~~~~~~ 571 (730)
.|+..+|-..++++.+.- +.|...+.-.-++|...|+.+.-...+++++..- .+|...|. .+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccchh
Confidence 344444444444444432 2244444444444555555554444444444321 12221111 11112224444555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004791 572 ALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQ 613 (730)
Q Consensus 572 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (730)
|.+.-++..+.+ +.|...-..+...+...|+..++.++..+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555444444433 33333334444444444445555444433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.1 Score=52.93 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004791 550 LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT-V---YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYT 625 (730)
Q Consensus 550 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 625 (730)
+.+...++.+..+|.+.|++++|+..|++.++.. |+ . .+|..+..+|.+.|++++|++.++++++.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 4567889999999999999999999999999865 54 3 458999999999999999999999999852 11 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHCCC
Q 004791 626 YTAFIQ--AYCSIGKLDEAEDLIVKMNREGI 654 (730)
Q Consensus 626 ~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~ 654 (730)
|..+.. .+....+.++..++++.+.+-|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 11122234566777777777663
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.8 Score=40.96 Aligned_cols=201 Identities=23% Similarity=0.189 Sum_probs=116.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 004791 484 FTYSVFIDTLCKRGRVEEAQVLFDSLEKK-GIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID- 561 (730)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~- 561 (730)
..+......+...+....+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44455555556666666666666555541 122244455555556666666666776666666543222 112222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGV--KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL 639 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 639 (730)
.+...|+++.|...+.+...... ......+......+...++.+++...+.+............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56667777777777777655221 1223333444444566777777777777777643221355667777777777778
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 640 DEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
+.|...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888777763 243 444555555555666777887777777653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.25 Score=41.34 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLIC 666 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 666 (730)
|..++..++.++++.|+++....+++..- |+.++.. ...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566677777777777777666665443 2221110 00000 0112235567777777777
Q ss_pred HHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHcCCh
Q 004791 667 AYAHLGLIYSAFDVLKRMF-DAGCEPSHHTYAFLIKHLSNKKV 708 (730)
Q Consensus 667 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~l~~~~~ 708 (730)
+|+..|++..|+++.+... .++++-+...|..|+......-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 7777788888887777775 56677777777777766654433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.70 E-value=2.5 Score=42.08 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004791 170 GYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLIL 246 (730)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 246 (730)
+|..+...=...|+.+-|..+.+ ..|+.. .-+-.+.+.|+.+.| +.+.++.| .|| -+|..|+.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~D-Li~~vLl~ 64 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE------LEPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTD-LIYLVLLH 64 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH------cCCChH---HHHHHHhcCCchHHH---HHHHHHcC-Ccc-HHHHHHHH
Confidence 35555556667788887777653 344432 234455666766666 45566654 233 23444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.1 Score=42.83 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=26.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 319 CRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRML 370 (730)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 370 (730)
...|++.+|..+|+.......+ +...-..++.+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445555555555555544333 34444455555555566666655555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.23 Score=46.79 Aligned_cols=96 Identities=15% Similarity=0.232 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHH
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IVP-DSVTYTLLIC 666 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~l~~ 666 (730)
|+.-+.. .+.|++..|...|...++..+.. ....+..|..++...|++++|..+|..+.+.- -.| -+..+.-|+.
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4433332 34566666666666666643221 22345556667777777777777777666532 011 2455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 004791 667 AYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 667 ~~~~~g~~~~A~~~~~~m~~~ 687 (730)
+..+.|+.++|...|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 667777777777777776654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.32 Score=39.74 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=45.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCC
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVY---TYTAFIQAYCSIGK 638 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~ 638 (730)
++...|+.+.|++.|.+.+..- +.....||.-..++.-+|+.++|++-+++.++..-..... .|.--...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3445556666666665555432 3445555555555555566666655555555531111111 12222334455555
Q ss_pred HHHHHHHHHHHHHCC
Q 004791 639 LDEAEDLIVKMNREG 653 (730)
Q Consensus 639 ~~~A~~~~~~m~~~g 653 (730)
-+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.1 Score=47.75 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS------YTYNALIDGLYR----ERKVQEALLLVEKMTKMGVKPTVYT 590 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~ 590 (730)
...++....-.|+-+.+++++.+..+.+-.-.+ -.|...+..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344455555556666666666655443211111 123333333332 34677788888888765 366555
Q ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 591 YTI-LIEEVLKEGDFDHAHRLLDQMVSLG--L-KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLIC 666 (730)
Q Consensus 591 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 666 (730)
|.. -...+...|++++|++.|++..... . ......+.-++..+.-.++|++|.+.|.++.+.. .-+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 543 3455667888888888888765311 1 1133445566777778888888888888888754 234444544433
Q ss_pred -HHHhcCCH-------HHHHHHHHHHH
Q 004791 667 -AYAHLGLI-------YSAFDVLKRMF 685 (730)
Q Consensus 667 -~~~~~g~~-------~~A~~~~~~m~ 685 (730)
++...|+. ++|.++|++.-
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34556777 77777777664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.38 E-value=3 Score=40.89 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=28.4
Q ss_pred HhcCChHHHHHHHHHHHhCC--CCCCHH------HHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 004791 179 SKFHLVDEMKRVYLEMLDNM--VVPNIY------TFNTMINGCCKVG-NVGEAELYVSKIVQ 231 (730)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~--~~~~~~------~~~~ll~~~~~~g-~~~~A~~~~~~~~~ 231 (730)
.+.|+++.|...+.++.... ..|+.. .|+.- ....+.+ ++++|..++++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G-~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG-KSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHH
Confidence 35678888888887776532 122221 12222 2233444 77777777766644
|
It is also involved in sporulation []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.1 Score=36.88 Aligned_cols=139 Identities=14% Similarity=0.204 Sum_probs=77.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004791 530 KEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHR 609 (730)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 609 (730)
-.|.+++..++..+..... +..-+|=+|--....-+-+-..+.++..-+ --|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 3566667777776666532 333333333332223333333344433322 1111 13455555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004791 610 LLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGC 689 (730)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 689 (730)
.+-.+ ..+.......++.+..+|+-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++++.-++|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 54433 2245556677788889999999999999987644 68888899999999999999999999999988886
Q ss_pred C
Q 004791 690 E 690 (730)
Q Consensus 690 ~ 690 (730)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.23 E-value=2 Score=44.17 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGLK-PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..+..++.+.|+.++|++.++++++.... ....+...|+.++...+.+.++..++.+--+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33455555666666666666666553211 1233455666666666666666666666543
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.5 Score=45.43 Aligned_cols=151 Identities=17% Similarity=0.054 Sum_probs=86.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcCh----hhHHHHHHHHHhcCCHH
Q 004791 215 KVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNE----VSYTNLIHGLCEAKRVD 290 (730)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~ 290 (730)
..|+..+|-..++++.+. .+-|...++--=+++.-.|+.+.-...++++... +.+|. ..-..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345666666666666654 3345555555556666667776666666666542 11332 22234445566777788
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CChhhHHHHHHHHHhcCCHHHHHHHH
Q 004791 291 EALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE----PNVHTYTVLIDCLCKENKVDEASELL 366 (730)
Q Consensus 291 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 366 (730)
+|.+.-++..+.+ +.|..+-.++...+-..|++.++.++..+-... .. .-...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8877777777665 446666667777777777777777765543211 00 00111222233344556677777777
Q ss_pred HHH
Q 004791 367 NRM 369 (730)
Q Consensus 367 ~~~ 369 (730)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.64 Score=45.25 Aligned_cols=47 Identities=15% Similarity=0.287 Sum_probs=22.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhCCChhHHHH
Q 004791 423 FCKRKNVHRAMSLLNELLEQN--LSPTLITYNSLIYGQCREGHLDSAYK 469 (730)
Q Consensus 423 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~ 469 (730)
+....+.++|+..+.+.+++- ...-..++..+..+.++.|.+++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344556666666665555431 11112234444555555555555443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.9 Score=37.14 Aligned_cols=85 Identities=11% Similarity=0.031 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 004791 172 NTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRN 251 (730)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 251 (730)
..++..+.+.+....+...++.+++.+. .+....+.++..|++.+. .+....+.. ..+.+....++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555556666667776666666552 455566666666665432 222233321 11223333445555555
Q ss_pred CChhHHHHHHHhc
Q 004791 252 KDVEKGFRVFMMM 264 (730)
Q Consensus 252 g~~~~A~~~~~~m 264 (730)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.08 E-value=1.9 Score=37.09 Aligned_cols=43 Identities=7% Similarity=0.005 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 004791 278 NLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRV 321 (730)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 321 (730)
.++..+.+.+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444455555555555555444 23444555555555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=3.1 Score=39.10 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=26.0
Q ss_pred HhcCCHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 284 CEAKRVDEALDLFRRMGEDD--CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSAR 337 (730)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (730)
.+.|++++|.+.|+.+..+. -+-...+...++-++.+.+++++|+..+++..+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34455555555555555431 0112223334445555555555555555555544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.05 E-value=3.1 Score=39.07 Aligned_cols=64 Identities=20% Similarity=0.109 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNREGIVP---DSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
.+.+-|.+.|.+..|..-+++|++. .+- ....+-.+..+|.+.|..++|.+.-+-+.. + .|+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~-N-~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA-N-YPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh-c-CCCCc
Confidence 4556788999999999999999986 222 245566777889999999999887665543 3 45443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.1 Score=46.98 Aligned_cols=156 Identities=10% Similarity=0.024 Sum_probs=89.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 004791 179 SKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGF 258 (730)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 258 (730)
.-.++++++.+..+.-.-.. .-...-.+.++..+-+.|..+.|+++...-.. -.....+.|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHH
Confidence 34577777655553111000 11233466777777788888888776543221 133455678888887
Q ss_pred HHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 259 RVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARG 338 (730)
Q Consensus 259 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 338 (730)
++.++.. +...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....+|
T Consensus 339 ~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7765543 566788888888888888888888877653 4556666777777777666666665554
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 339 CEPNVHTYTVLIDCLCKENKVDEASELLNR 368 (730)
Q Consensus 339 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 368 (730)
- ++....++.-.|++++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 45555556666777777766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.04 E-value=2.5 Score=39.04 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLG---LKPDVYTYTAFIQAYCSIGKLDEAEDL 645 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~ 645 (730)
|...|-.+....++..|..+++.--+.+ -.-+..+...|+.+| ..|+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3344444555566777777776643321 112455566666655 34565555444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.73 E-value=2.4 Score=36.94 Aligned_cols=123 Identities=10% Similarity=0.002 Sum_probs=55.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-hHHHH--HHHHHhcCCh
Q 004791 179 SKFHLVDEMKRVYLEMLDNMVVPNIY-TFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTF-TYTSL--ILGYCRNKDV 254 (730)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l--i~~~~~~g~~ 254 (730)
.+.+..++|+.-|.++.+.|...-.+ ..........+.|+...|...|+++-.....|-.. -...| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44556666666666666554332211 22223333445566666666666655443333222 00111 1123344555
Q ss_pred hHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004791 255 EKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGE 301 (730)
Q Consensus 255 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 301 (730)
+......+-+-..+.+--...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555444444433333333344444444455555555555555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.70 E-value=8.4 Score=42.38 Aligned_cols=141 Identities=20% Similarity=0.185 Sum_probs=93.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChh
Q 004791 176 MQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVE 255 (730)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 255 (730)
.-+.+.|++++|...|-+.+.. +.|. -++.-|....+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3345779999999999887753 2332 3556666777777778888888888875 4555677889999999999
Q ss_pred HHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 256 KGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEM 334 (730)
Q Consensus 256 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 334 (730)
+-.+..+...+..+.-| ....+..+.+.+-.++|.-+-.+... +...... .+-..|++++|++.+..+
T Consensus 449 kL~efI~~~~~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCDKGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCCCcceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 88888776663112112 33455666666767777666554432 2222332 334568899999888765
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.71 Score=37.83 Aligned_cols=88 Identities=22% Similarity=0.122 Sum_probs=39.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD---SVTYTLLICAYAHLGLI 674 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~ 674 (730)
+...|+++.|++.|.+.+..-+. ....||.-..++.-+|+.++|++-+++..+..-... ...|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34445555555555555543211 344455555555555555555555555544210111 12233333444555555
Q ss_pred HHHHHHHHHHHH
Q 004791 675 YSAFDVLKRMFD 686 (730)
Q Consensus 675 ~~A~~~~~~m~~ 686 (730)
+.|..-|+...+
T Consensus 132 d~AR~DFe~AA~ 143 (175)
T KOG4555|consen 132 DAARADFEAAAQ 143 (175)
T ss_pred HHHHHhHHHHHH
Confidence 555554444433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.58 E-value=1 Score=37.75 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 004791 550 LPNSYTYNALIDGLYRERKVQEALLLVEKMTK-MGVKPTVYTYTILIEEVL 599 (730)
Q Consensus 550 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~~~~ 599 (730)
.|+..++.+++.+|+..+++..|+++.+...+ .+++.+..+|..|+.-..
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46666666666666666666666666666654 445555666666655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.4 Score=46.00 Aligned_cols=132 Identities=16% Similarity=0.159 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEV 598 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 598 (730)
...+.++..+-+.|..+.|+.+...-. .-.....+.|+++.|.++.++ ..+...|..|.+..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 345666666666777776666543211 112334456777766655422 24566777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 599 LKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAF 678 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 678 (730)
..+|+++-|.+.|.+.. | |..|+-.|...|+.+.-.++.+.....| . ++....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~------d---~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK------D---FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhc------C---ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHH
Confidence 77777777777776642 1 4455555666777666666666666554 1 333344445556666666
Q ss_pred HHHHH
Q 004791 679 DVLKR 683 (730)
Q Consensus 679 ~~~~~ 683 (730)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.44 E-value=2.4 Score=35.03 Aligned_cols=62 Identities=27% Similarity=0.338 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 312 TVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGL 374 (730)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 374 (730)
...+..+.+.|+-+.-.+++.++.+ +-++++.....+..+|.+.|+..++.+++.+.-++|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344455555555555555555543 2234555555556666666666666666665555553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.43 E-value=1.4 Score=37.41 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004791 565 RERKVQEALLLVEKMTKMGV--KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 617 (730)
+.|++++|.+.|+.+...-. +-....--.++.+|.+.|++++|...+++.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44555555555555543210 112233334444555555555555555555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.54 Score=44.37 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=39.0
Q ss_pred hcCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-ChhhHHHHHHHHHhcCCHH
Q 004791 285 EAKRVDEALDLFRRMGEDDC--RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE-P-NVHTYTVLIDCLCKENKVD 360 (730)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~ 360 (730)
+.|++.+|...|....+... .-....+-.|...+...|++++|..+|..+.+.-++ | -+..+.-|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 33445555555544444320 001122333455555555555555555555443211 0 1234444455555555555
Q ss_pred HHHHHHHHHHHC
Q 004791 361 EASELLNRMLEK 372 (730)
Q Consensus 361 ~A~~~~~~~~~~ 372 (730)
+|...|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=4.8 Score=37.87 Aligned_cols=222 Identities=21% Similarity=0.117 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 004791 428 NVHRAMSLLNELLEQNLS-PTLITYNSLIYGQCREGHLDSAYKVLHLINES-GLVPDQFTYSVFIDTLCKRGRVEEAQVL 505 (730)
Q Consensus 428 ~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 505 (730)
....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444433211 12344555555666666666666666655432 1223444555555566666667777777
Q ss_pred HHHHHHcCCCcCHHHHHHHHH-HHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 506 FDSLEKKGIKAGEVIYTALID-GYCKEGKIDDAHSLLERMLSDDC--LPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.+....
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 77776644332 122222222 67778888888888888755221 023333444444466778888888888888875
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 583 GVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 583 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
. +. ....+..+...+...+++++|...+......... ....+..+...+...|..+++...+.+....
T Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 197 N-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred C-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 33 4677778888888888899999999888875322 2444555555555777789999888888874
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.27 E-value=8.9 Score=40.86 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=73.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYT-ALIDGYCKEGKIDDAHSLLERMLSDDC---LPNSYTYNALIDGLYRERKVQE 571 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~~~~~~~~ 571 (730)
....+.|.++++.+.++-+ +...|. .-...+...|++++|++.|++...... ......+--+...+.-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP--~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYP--NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4567778888888877633 433333 334556678888888888887653210 1122334445555667888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH-------HHHHHHHHHHHH
Q 004791 572 ALLLVEKMTKMGVKPTVYTYTILIEE-VLKEGDF-------DHAHRLLDQMVS 616 (730)
Q Consensus 572 A~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~ 616 (730)
|.+.|..+.+.. .-+..+|..+..+ +...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888754 3445555444433 3456666 777777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.99 E-value=11 Score=40.95 Aligned_cols=345 Identities=16% Similarity=0.159 Sum_probs=185.8
Q ss_pred hhCCCCcChhhHH-----HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHC
Q 004791 265 PKKGCRRNEVSYT-----NLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGR--KSEALEFFNEMSAR 337 (730)
Q Consensus 265 ~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~ 337 (730)
...|++.+..-|. .+++-+...+.+..|+++-..+...-... ...|.....-+.+..+ -+++++..++=.+.
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 3456665555444 45677778888899988887775432122 4555556666655432 23334333332222
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh
Q 004791 338 GCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLF----PNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA 413 (730)
Q Consensus 338 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 413 (730)
-. -....|..++......|+.+.|..+++.=...+.. .+..-+...+.-..+.|+.+-...++-.+... .+.
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 12 24567777888888889999998887653222110 01112223333344444444444444444322 011
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH-----HhCCCCCCHHhHHH
Q 004791 414 RTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLI-----NESGLVPDQFTYSV 488 (730)
Q Consensus 414 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~~~~ 488 (730)
..+. ....+..-|..+|.+..++. +..+ +-..|.+..+...+-.+.-+- ...+..|+ ...
T Consensus 579 s~l~------~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~ 643 (829)
T KOG2280|consen 579 SSLF------MTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKT 643 (829)
T ss_pred HHHH------HHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHH
Confidence 1111 11122334555555554431 1111 112222222222222111111 01122233 223
Q ss_pred HHHHHHhcCCHHH----------HHHHHHHHHH-cCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004791 489 FIDTLCKRGRVEE----------AQVLFDSLEK-KGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYN 557 (730)
Q Consensus 489 li~~~~~~g~~~~----------A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 557 (730)
..+.+.+.....- -.++.+.+.. .+......+.+.-+.-+...|+..+|.++-.+.. .||-..|-
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 3344444333111 1222222222 1222333455666677788899999998877664 58888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
--+.+++..+++++-.++-+.+.. +.-|.-.+..|.+.|+.++|.+++.+.. +. .-...+|.+.|
T Consensus 720 Lk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~------~l---~ekv~ay~~~~ 784 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG------GL---QEKVKAYLRVG 784 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC------Ch---HHHHHHHHHhc
Confidence 889999999999988777665442 3456667889999999999999987652 11 15677899999
Q ss_pred CHHHHHHHHHH
Q 004791 638 KLDEAEDLIVK 648 (730)
Q Consensus 638 ~~~~A~~~~~~ 648 (730)
++.+|.++.-+
T Consensus 785 ~~~eAad~A~~ 795 (829)
T KOG2280|consen 785 DVKEAADLAAE 795 (829)
T ss_pred cHHHHHHHHHH
Confidence 99999876544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.97 E-value=11 Score=41.07 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhCC-----CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 004791 380 TYNALIDGYCKEG-----LMEAALQILDLMKSNNCSPNARTYNELICGFCK-RKNVHRAMSLLNELLEQNLSPTLITYNS 453 (730)
Q Consensus 380 ~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 453 (730)
....+..+|.+.. +.+.|..++....+.| .|+....-..+..... ..+...|.++|......|.. ..+..
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHH
Confidence 3444555554432 4455666666665555 2232222211111111 23455666666666665532 22222
Q ss_pred HHHHHH----hCCChhHHHHHHHHHHhCC
Q 004791 454 LIYGQC----REGHLDSAYKVLHLINESG 478 (730)
Q Consensus 454 li~~~~----~~g~~~~a~~~~~~~~~~~ 478 (730)
+...|. ...+.+.|..++.+..+.|
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 222211 1124556666666666655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.92 E-value=8.2 Score=44.25 Aligned_cols=53 Identities=15% Similarity=0.074 Sum_probs=23.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 350 IDCLCKENKVDEASELLNRMLEKGLFPNVV--TYNALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 350 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
+.+|-.+|++.+|..+..++... .+.. +-..|+.-+...++.-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 44455555555555555444321 1111 11334444555555555555554444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.90 E-value=5.4 Score=37.01 Aligned_cols=30 Identities=7% Similarity=0.007 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 004791 109 VESYSSLLNLLIRNNFTKASEKIVFLMLKS 138 (730)
Q Consensus 109 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~ 138 (730)
...|-.-...+-.+..|+.|..-+...++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~ 60 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG 60 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 344544445555566777766655555543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.86 E-value=2.2 Score=36.24 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=34.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 319 CRVGRKSEALEFFNEMSARGCE--PNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYC 389 (730)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 389 (730)
.+.|++++|.+.|+.+..+-+. -...+...++.+|.+.|++++|...+++.++..+..-.+-|...+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3455555555555555544111 1223344455555566666666666666555543333333444444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.82 E-value=5.4 Score=41.22 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVK-PTVYTYTILIEEVLKEGDFDHAHRLLDQMV 615 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 615 (730)
.+...+.+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444444566666666666666543211 123344556666666666666666666543
|
The molecular function of this protein is uncertain. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.71 Score=43.33 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 585 KPTVYTYTILIEEVLK-----EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 659 (730)
.-|..+|...+..+.. .+.++--...++.|.+.|+.-|..+|+.|++.+-+..- .|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH
Confidence 3466666666666643 34566666667777777777777777777776644321 11000
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCChh-hhhhhccchhhhHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVD-ERKQQCDGILFGFK 723 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~~-e~~~~~~~~l~~~~ 723 (730)
+....--|- .+-+=+++++++|...|+.||..+-..|+..+++.+.. ........|..+|+
T Consensus 128 -fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPkfk 189 (406)
T KOG3941|consen 128 -FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPKFK 189 (406)
T ss_pred -HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhhhc
Confidence 000000011 11233556666666666666666666666666655433 22333444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.55 E-value=8.3 Score=38.02 Aligned_cols=131 Identities=15% Similarity=0.207 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCC---
Q 004791 536 DAHSLLERMLSDDCLPNSYTYNALIDGLYR--E----RKVQEALLLVEKMTKMG---VKPTVYTYTILIEEVLKEGD--- 603 (730)
Q Consensus 536 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~----~~~~~A~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~g~--- 603 (730)
+.+.+++.+.+.|+.-+..+|-+....... . ....+|..+|+.|.+.. ..++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445566666666666665555443222222 1 13456777888887642 12344445444433 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 604 -FDHAHRLLDQMVSLGLKPDV--YTYTAFIQAYCSIG--KLDEAEDLIVKMNREGIVPDSVTYTLLICAY 668 (730)
Q Consensus 604 -~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 668 (730)
.+.+..+|+.+.+.|+..+. .....++..+.... ....+.++++.+.+.|+++....|..++-..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 35567777777776666432 22222222221111 1456778888888888887777776665443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.23 Score=32.51 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|..+...|...|++++|+++++++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.40 E-value=8.6 Score=37.75 Aligned_cols=20 Identities=5% Similarity=-0.193 Sum_probs=13.2
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004791 666 CAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~m~ 685 (730)
..+.+.+++++|.++|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34566777777777777543
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.33 Score=31.77 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 661 YTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 661 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
|..+..+|...|++++|+++|+++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.07 E-value=9.8 Score=37.49 Aligned_cols=128 Identities=15% Similarity=0.119 Sum_probs=67.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH-
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDDC-----LPNSYTYNALIDGLYRERKVQEALLLVEKMTK----MGVKPTVYTYT- 592 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~~~~~~~~- 592 (730)
.+..++.-.+.++++++.|+...+.-. .....++..|...|.+..++++|.-+..+..+ .++..-..-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344455555566666666665544210 11223566666666666777766665555443 22222222222
Q ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 593 ----ILIEEVLKEGDFDHAHRLLDQMVS----LGLKP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 593 ----~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
.|.-++...|++..|.+.-++..+ .|-.+ -......+.+.|...|+.+.|..-++...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 233455566777777666666654 23111 12223456677777777777777666644
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.95 E-value=17 Score=39.83 Aligned_cols=179 Identities=14% Similarity=0.113 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHhc
Q 004791 289 VDEALDLFRRMGEDDCRPTVRTYTVVIFG-----LCRVGRKSEALEFFNEMSA-------RGCEPNVHTYTVLIDCLCKE 356 (730)
Q Consensus 289 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~ 356 (730)
..+|.++++...+.| +...-..++.+ +....+.+.|+..|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 345666666665554 23222222222 2234566667766666655 33 334555566666653
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-CCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHH----hc
Q 004791 357 N-----KVDEASELLNRMLEKGLFPNVVTYNALIDGYCK-EGLMEAALQILDLMKSNNCSPNARTYNELICGFC----KR 426 (730)
Q Consensus 357 g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~ 426 (730)
. +.+.|..++....+.|.+ +....-..+..... ..+...|.++|......|. ...+-.+...|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcC
Confidence 2 556678888777776543 33322222221111 2356778888888877762 222222222221 23
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 004791 427 KNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGL 479 (730)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 479 (730)
.+...|..++.+..+.|. |....-...+..+.. +.++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 467788888888887762 221111122222333 666666666666555543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.72 E-value=19 Score=40.00 Aligned_cols=190 Identities=12% Similarity=0.090 Sum_probs=107.9
Q ss_pred hHHHHHHhhhcCCCCCCC--HHHHHHHHHHHH-hcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccC
Q 004791 91 TALDFSYWISQKPGFKHS--VESYSSLLNLLI-RNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLS 167 (730)
Q Consensus 91 ~al~~f~~~~~~~~~~~~--~~~~~~l~~~l~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (730)
.|+..++.+.++...+|. ..++..+.++|. ...++++|+..+...+..+.+.+ .. +.-
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~-~~---d~k--------------- 99 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHR-LT---DLK--------------- 99 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-hH---HHH---------------
Confidence 467777777765544443 456788888887 68899999999988776654411 11 100
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHH
Q 004791 168 VKGYNTLLMQLSKFHLVDEMKRVYLEMLDNM----VVPNIYTFNTM-INGCCKVGNVGEAELYVSKIVQAG---LSPDTF 239 (730)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~ 239 (730)
...-..++..|.+.+... |....++.++.- ..+-...|.-+ +..+...+++..|.+.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 011223455566655555 777777766541 11222233333 222333478888888888876532 233444
Q ss_pred hHHHHHHHHH--hcCChhHHHHHHHhchhCC---------CCcChhhHHHHHHHHH--hcCCHHHHHHHHHHHh
Q 004791 240 TYTSLILGYC--RNKDVEKGFRVFMMMPKKG---------CRRNEVSYTNLIHGLC--EAKRVDEALDLFRRMG 300 (730)
Q Consensus 240 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 300 (730)
++-.++.+.. +.+..+++.+..+++.... ..|...+|..+++.++ ..|+++.+.+.++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444443 4555666766666553211 1234556666666544 4677667666655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.5 Score=42.09 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF-----DAGCEPSHHTYAFL 699 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~l 699 (730)
++..++..+...|+++.+.+.++++.... +-|...|..++.+|.+.|+...|+..|+++. +.|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566666777777777777777777643 3366777777777777777777777776664 35777777766666
Q ss_pred HHHHH
Q 004791 700 IKHLS 704 (730)
Q Consensus 700 ~~~l~ 704 (730)
...+.
T Consensus 234 ~~~~~ 238 (280)
T COG3629 234 EEILR 238 (280)
T ss_pred HHHhc
Confidence 55543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.32 Score=30.15 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
+|..|+..|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.3 Score=41.78 Aligned_cols=105 Identities=16% Similarity=0.260 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 550 LPNSYTYNALIDGLYR-----ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVY 624 (730)
Q Consensus 550 ~p~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 624 (730)
.-|-.+|...+..+.. .+.++--...++.|.+.|+.-|..+|+.|++.+-+.. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 3467788888877753 3556666677888999999999999999988764422 12211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGL 673 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 673 (730)
++....-.|-++ -+=+++++++|...|+.||..+-..|++++.+.|.
T Consensus 127 vfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 222222233332 23466777777777777777777777777766553
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=13 Score=36.35 Aligned_cols=50 Identities=8% Similarity=-0.181 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 004791 200 VPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKD 253 (730)
Q Consensus 200 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 253 (730)
.+|.......+.++...|. .++...+..+.+ .+|...-...+.++++.|+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGM 83 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCC
Confidence 3455555555555555553 223333333333 2344444445555555554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.87 E-value=8.2 Score=33.77 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=53.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHH--HHHhcCCH
Q 004791 494 CKRGRVEEAQVLFDSLEKKGIKAGE-VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSY-TYNALID--GLYRERKV 569 (730)
Q Consensus 494 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~--~~~~~~~~ 569 (730)
.+.+..++|+.-|..+.+.|...-+ ...........+.|+...|...|+++-.....|-+. -...|-. .+..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445555666666665555433111 111222333445556666666666555443333222 1111111 12345555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 570 QEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 570 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
++.....+.+...+-+-....-..|.-+-.+.|++.+|...|.++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555444444333222222233344444455555555555555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.80 E-value=10 Score=34.61 Aligned_cols=177 Identities=14% Similarity=0.101 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004791 184 VDEMKRVYLEMLDNMVVPN-IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFM 262 (730)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 262 (730)
.+-|+--|.+.+. +.|+ ..+||-+.--+...|+++.|.+.|+...+.++.-+....|.-|..| --|++.-|.+-|-
T Consensus 81 ~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~ 157 (297)
T COG4785 81 RALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLL 157 (297)
T ss_pred HHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHH
Confidence 3334444444443 2343 3356666666667777777777777777665444444444444333 2466666666555
Q ss_pred hchhCCC-CcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004791 263 MMPKKGC-RRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP 341 (730)
Q Consensus 263 ~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 341 (730)
..-+.+. .|=-..|.-++ -+.-++.+|..-+.+-.+. .|..-|...|-.+.- |+..+ ..+++.+... -..
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~-a~~ 228 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYL-GKISE-ETLMERLKAD-ATD 228 (297)
T ss_pred HHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHH-hhccH-HHHHHHHHhh-ccc
Confidence 4444221 01111222111 1233455555433322211 234444443333322 11111 1122222221 111
Q ss_pred C-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 342 N-------VHTYTVLIDCLCKENKVDEASELLNRMLEK 372 (730)
Q Consensus 342 ~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 372 (730)
+ ..||..|...+...|+.++|..+|+-.+..
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1 345666666666777777777777666553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.75 E-value=6.4 Score=34.21 Aligned_cols=51 Identities=25% Similarity=0.246 Sum_probs=24.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKPDVY-TYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
+.++.+++..+++.+.-. .|... .-..-...+...|++.+|+.+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445555555555555543 22211 1112223345556666666666665543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.68 E-value=28 Score=39.56 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY 564 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 564 (730)
|......+-++..++.+....-.++..-.+.++..|+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 4455555666666666665544445555555555554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.61 E-value=9.8 Score=34.14 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=63.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 595 IEEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672 (730)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 672 (730)
...+...|++++|...++..+.....-+ ..+-..|.+.....|.+++|..+++...+.+. .......-++++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 4556778888888888887775311111 11223455677888899999988888776442 2333445577888889
Q ss_pred CHHHHHHHHHHHHHcC
Q 004791 673 LIYSAFDVLKRMFDAG 688 (730)
Q Consensus 673 ~~~~A~~~~~~m~~~g 688 (730)
+-++|..-|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999888765
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.44 E-value=14 Score=35.45 Aligned_cols=71 Identities=21% Similarity=0.158 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHHH
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF-----DAGCEPSHHTYA 697 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 697 (730)
+......|..+|.+.+|.++.++.+..+ +.+...|..|+..+...|+--.|.+.++++. +.|+..|...+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 4455677889999999999999999854 4478889999999999999888888888774 457777665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.43 E-value=2.5 Score=40.65 Aligned_cols=77 Identities=22% Similarity=0.269 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR-----EGIVPDSVTYTLL 664 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~l 664 (730)
++..++..+...|+++.+.+.++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4445566666667777777777777665433 666677777777777777777777766654 4666666655554
Q ss_pred HHH
Q 004791 665 ICA 667 (730)
Q Consensus 665 ~~~ 667 (730)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.26 Score=30.03 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 004791 658 SVTYTLLICAYAHLGLIYSA 677 (730)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A 677 (730)
...|..++..|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44444444444444444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.74 E-value=27 Score=38.77 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 004791 278 NLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRV 321 (730)
Q Consensus 278 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 321 (730)
.+|--+.++|++++|.++..+.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 5666777888888888887554433 233445556666666554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.58 E-value=12 Score=33.11 Aligned_cols=133 Identities=15% Similarity=0.110 Sum_probs=61.4
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 004791 225 YVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDC 304 (730)
Q Consensus 225 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 304 (730)
+..-+.+.++.++...+..+++.+.+.|++..-..++ ..++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 3344445566666666666666666666655544433 2233344333332221111 2223333333333332
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 305 RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLE 371 (730)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 371 (730)
=...+..+++.+...|++-+|+++.+..... +......++.+..+.++...=..+|.-..+
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113445566666667777766666554221 222234455555555554444444444433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.64 Score=28.76 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677788888888888888888754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.56 E-value=39 Score=39.19 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSY----TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
|...++.--+.|.+.+|+.++. |+.. .|.+..+.+.....+++|.-+|+..-+ ..-.+.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~ 973 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALK 973 (1265)
T ss_pred cHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHH
Confidence 3333444445666666665543 4443 344444555566777777777765432 112356
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVY--TYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLI 674 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~ 674 (730)
+|..+|+|.+|+.+..++.. .-|.. +-..|+.-+..+++.-+|-++..+.... |. ..+..|++...|
T Consensus 974 a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEW 1042 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHH
Confidence 77778888888888777643 11222 2256677777888888888877776642 21 223345555666
Q ss_pred HHHHHHHH
Q 004791 675 YSAFDVLK 682 (730)
Q Consensus 675 ~~A~~~~~ 682 (730)
++|..+..
T Consensus 1043 ~eAlrva~ 1050 (1265)
T KOG1920|consen 1043 EEALRVAS 1050 (1265)
T ss_pred HHHHHHHH
Confidence 66666544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.75 Score=27.85 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+|..++.+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555556666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.31 E-value=3.3 Score=36.59 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCC-------HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 004791 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEVLK---EGD-------FDHAHRLLDQMVSLGLKPD-VYTYTAFIQAYCSIG 637 (730)
Q Consensus 569 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~-------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 637 (730)
++.|.+.++.....+ +.|...++.-..++.. ... +++|+.-|++.+.. .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 456666666654444 4566555544444433 333 33344444444443 443 456777777776544
Q ss_pred C-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004791 638 K-----------LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCE 690 (730)
Q Consensus 638 ~-----------~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 690 (730)
. +++|.+.|++..+ ..|+..+|+.-+... ++|-++..++.+.|..
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 2 4555555666655 457777777655443 3566677776665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.14 E-value=21 Score=35.30 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHH
Q 004791 396 AALQILDLMKSNNCSPNARTYNEL 419 (730)
Q Consensus 396 ~A~~~~~~m~~~~~~~~~~~~~~l 419 (730)
.+.++++.+.+.|++.....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 344445555555544444444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.09 E-value=5.2 Score=36.00 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=46.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004791 169 KGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNI--YTFNTMINGCCKVGNVGEAELYVSKIVQ 231 (730)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 231 (730)
..+..+..-|.+.|+.+.|++.|.++.+....+.. ..+..+|....-.+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35677788888888888888888888876444433 2566777777778888888777777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.01 E-value=27 Score=36.40 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=41.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 561 (730)
|.....+++..+....+..-.+.+..+|...|- +-..+..++.+|... ..+.-..+|+++.+.. -.|++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHH
Confidence 333444445555554444444555555544432 333444555555444 3344444555444433 122222222333
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 004791 562 GLYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~ 581 (730)
-|- .++.+.+..+|.++..
T Consensus 141 ~yE-kik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKALY 159 (711)
T ss_pred HHH-HhchhhHHHHHHHHHH
Confidence 222 2444455555554443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.81 Score=27.68 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
+|..++.+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.86 E-value=15 Score=33.46 Aligned_cols=178 Identities=19% Similarity=0.118 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 497 GRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLV 576 (730)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 576 (730)
|-..-|+.-|.+.....+. -+.+||-+.--+...|+++.|.+.|+...+.+..-+-...|.-|.. .--|++.-|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHH
Confidence 3344444444444443332 3456666666667777777777777777766522222233332222 2356666666655
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 577 EKMTKMGVKPTV--YTYTILIEEVLKEGDFDHAHRLL-DQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 577 ~~m~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
-+.-+.+ +.|+ ..|-.+.. ..-+..+|..-+ ++... .|..-|...+-.|. .|++.+ ..+++++....
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~a 226 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE-ETLMERLKADA 226 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH-HHHHHHHHhhc
Confidence 5554433 2222 22222221 122344444333 33322 23334443333222 122211 12333333211
Q ss_pred CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 654 IVPD-------SVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 654 ~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
..+ ..||-.|+.-+...|+.++|..+|+-.+..
T Consensus 227 -~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 -TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 346777777778888888888888877654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.45 Score=29.00 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=26.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 611 LDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 643 (730)
|++.++..+. +...|..+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677776544 8889999999999999999986
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.66 E-value=3.1 Score=32.24 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 640 DEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
=++.+-++.+...++.|++....+.+.+|.+.+++.-|+++++-...+ +..+...|..++.-+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 345555566666666677777777777777777777777777766533 222344555555433
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.26 E-value=41 Score=37.49 Aligned_cols=194 Identities=16% Similarity=0.193 Sum_probs=102.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC--CHHHHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHH---
Q 004791 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLD-NMVVP--NIYTFNTMINGCC-KVGNVGEAELYVSKIVQAGLSPDTF--- 239 (730)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~--- 239 (730)
++..|..+|. -|+..++-+.+ ..+.| +..++..+...+. ...++++|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3445555554 35555655553 22333 3345666777766 5678888888888775542222221
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHhchhCCCC--cCh--hhHHHH-HHHHHhcCCHHHHHHHHHHHhhCC---CCCChh
Q 004791 240 --TYTSLILGYCRNKDVEKGFRVFMMMPKKGCR--RNE--VSYTNL-IHGLCEAKRVDEALDLFRRMGEDD---CRPTVR 309 (730)
Q Consensus 240 --~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~--~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~ 309 (730)
....++..+.+.+... |....++..+.--. -.. ..+.-+ +..+...+++..|.+.++.+.... ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234566666666655 77777765542111 111 112222 222223378888888887775531 233344
Q ss_pred hHHHHHHHHH--hcCCHHHHHHHHHHHHHCCC---------CCChhhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 004791 310 TYTVVIFGLC--RVGRKSEALEFFNEMSARGC---------EPNVHTYTVLIDCLC--KENKVDEASELLNRML 370 (730)
Q Consensus 310 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~---------~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~ 370 (730)
.+-.++.+.. +.+..+++.+..+.+..... .|-..+|..+++.++ ..|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444 34556667666666533211 223455666665554 4666666666655553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.24 E-value=6 Score=35.61 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH------H
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DS------V 659 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~------~ 659 (730)
..+..++..|++.|+.++|.+.|.++.+....+. ...+-.++......|++..+...+.+....--.. |. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4456677777777777777777777776543332 3345666777777778887777777665421111 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
+|.. -.+...|++.+|-+.|-+..
T Consensus 117 ~~~g--L~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEG--LANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHHhchHHHHHHHHHccC
Confidence 2222 23455688888888777664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.14 E-value=3.3 Score=43.50 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK 600 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 600 (730)
.+.++..+.+.|..++|+++- +|...- .....+.|+++.|.++..+. .+..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhh
Confidence 444555555666666655432 121111 12223456666666655432 345566677777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 601 EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDV 680 (730)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 680 (730)
.|++..|.+.|.+... |..|+-.+...|+.+.-..+-....+.| +.| ....+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHH
Confidence 7777777777765532 3345555556666665555555555555 112 222345566777776666
Q ss_pred HHH
Q 004791 681 LKR 683 (730)
Q Consensus 681 ~~~ 683 (730)
+.+
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.13 E-value=40 Score=37.18 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=11.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 004791 384 LIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~ 405 (730)
|+..|...+++.+|++++-..+
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5555555555555555554433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.09 E-value=0.022 Score=49.50 Aligned_cols=84 Identities=5% Similarity=0.040 Sum_probs=42.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 004791 174 LLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKD 253 (730)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 253 (730)
++..+.+.+.+......++.+...+...+....+.++..|++.++.++...+++. .+.+-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3444455566666666666666554444555566666666666555555555541 111222334455555555
Q ss_pred hhHHHHHHHhc
Q 004791 254 VEKGFRVFMMM 264 (730)
Q Consensus 254 ~~~A~~~~~~m 264 (730)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.68 E-value=11 Score=33.95 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=38.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPT-----VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
+.+.|++++|..-|.++++.- ++. ...|..-..++.+.+.++.|++-..+.++.++. .......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 445555555555555555432 111 122333333444555555555555555443321 1222222233444455
Q ss_pred CHHHHHHHHHHHHH
Q 004791 638 KLDEAEDLIVKMNR 651 (730)
Q Consensus 638 ~~~~A~~~~~~m~~ 651 (730)
++++|++-++++.+
T Consensus 183 k~eealeDyKki~E 196 (271)
T KOG4234|consen 183 KYEEALEDYKKILE 196 (271)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.56 E-value=24 Score=33.90 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 310 TYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRML 370 (730)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 370 (730)
+++.....|..+|.+.+|.++.+..+..+. .+...+-.|+..+...|+--.|..-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556777788888888888888776643 367777888888888888666766666654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.55 E-value=1.4 Score=26.50 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.|..++..+...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.2 Score=26.74 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.|..+..++...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.86 E-value=2.9 Score=32.78 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 641 EAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
+..+-++.+...++.|++.+....+.+|.+.+++..|+++++-+..+ +.+....|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 44455555555666677777777777777777777777777766543 222222565555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=87.71 E-value=49 Score=36.48 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004791 538 HSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 617 (730)
....+.++..-...+...-.-++..|.+.|-.+.|.++.+.+-..- -...-|..-+..+.++|+......+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll-- 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL-- 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 4444444443323344455566666777777777766666554321 112233344444455555444444444333
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 618 GLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IVPDSVTYTLLICA--YAHLGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 618 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
..|+..|... ..++++.+.... +.+....|..+-.. ..+.|++.+|.+.+-.++..++.|...
T Consensus 466 -------------~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 466 -------------EEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------HHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 2333333211 112222111110 11111112122111 244588889988888888887888776
Q ss_pred HHHHHHHHH
Q 004791 695 TYAFLIKHL 703 (730)
Q Consensus 695 ~~~~l~~~l 703 (730)
-...|.+.+
T Consensus 532 ~~~LL~d~l 540 (566)
T PF07575_consen 532 WPLLLCDAL 540 (566)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 655555544
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.32 E-value=3.2 Score=40.32 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=58.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 560 IDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL 639 (730)
Q Consensus 560 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 639 (730)
..-|.+.|.+++|+.+|...+... +-|.+++..-..+|.+.+.+..|..-.+.++..+ +.-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 455777788888888887766643 2377777777777888777777777666665432 11122344444444455666
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 004791 640 DEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~~~ 657 (730)
.+|.+-++..++ +.|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 666666666665 4555
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.09 E-value=10 Score=40.00 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 273 EVSYTNLIHGLCEAKRVDEALDLFRRM 299 (730)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m 299 (730)
..-|..|.++..+.|++..|.+.|.+.
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 344455555555555555555544443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.07 E-value=38 Score=34.54 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLP---NSYTYNALIDGLYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 581 (730)
...+|..+...+.+.|.++.|...+.++...+... .+.....-+..+...|+..+|+..+++.++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777888888888888888888877643111 334444455666677888888888877776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.86 E-value=55 Score=36.18 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=32.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 004791 281 HGLCEAKRVDEALDLFRRMGEDDCRP---TVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKEN 357 (730)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 357 (730)
+.+.+.+.+++|++..+..... .| -...+...|..+.-.|++++|-...-.|... +..-|..-+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 3444555555555544443222 11 1223444555555555555555555555433 3334444444444444
Q ss_pred C
Q 004791 358 K 358 (730)
Q Consensus 358 ~ 358 (730)
+
T Consensus 438 ~ 438 (846)
T KOG2066|consen 438 Q 438 (846)
T ss_pred c
Confidence 3
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.29 E-value=35 Score=33.43 Aligned_cols=233 Identities=13% Similarity=0.073 Sum_probs=128.8
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCcCHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRV----EEAQVLFDSLEKKGIKAGEVIYT 522 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~ 522 (730)
|.......+..+...|. +++...+..+.. .+|.......+.++.+.|+. +++...+..+.... ++..+..
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHHH
Confidence 44444445555555553 223333333332 23555556666666666653 35566666553332 3455555
Q ss_pred HHHHHHHhcCCh-----hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 523 ALIDGYCKEGKI-----DDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 523 ~li~~~~~~g~~-----~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
..+.++...+.. ..+...+...... ++..+-...+.++.+.++ ++++..+-.+.+ .+|...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 555555554321 2233344333332 345555566666666665 456666666665 2444455555555
Q ss_pred HHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 598 VLKEG-DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYS 676 (730)
Q Consensus 598 ~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 676 (730)
+...+ +...+...+..+.. .++..+-...+.++.+.|. ..|+..+-+..+.+ + .....+.++...|.- +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 55443 24456666666664 4466667777778888777 56666666666543 2 234567777777874 6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004791 677 AFDVLKRMFDAGCEPSHHTYAFLIKHLS 704 (730)
Q Consensus 677 A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 704 (730)
|+..+.++.+. .||...-...+..+.
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88888888764 456666655555543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.05 E-value=29 Score=32.23 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHhC--CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------HHHHHh
Q 004791 567 RKVQEALLLVEKMTKM--GVKPTV---YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAF------IQAYCS 635 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~--~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l------~~~~~~ 635 (730)
.++++|+..|++.-+. |-..+. ..+.-+...-...+++.+|+++|++.......-+..-|..- .-++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4555666666555441 111111 12222333345677888888888887765443222222211 111112
Q ss_pred cCCHHHHHHHHHHHHH
Q 004791 636 IGKLDEAEDLIVKMNR 651 (730)
Q Consensus 636 ~g~~~~A~~~~~~m~~ 651 (730)
.++.-.+...+++-.+
T Consensus 208 ~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQE 223 (288)
T ss_pred cccHHHHHHHHHHHHh
Confidence 2455555666666666
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.58 E-value=50 Score=34.53 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 004791 451 YNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCK 530 (730)
Q Consensus 451 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 530 (730)
..+++..+.......-...+..+|.+.| .+...+..++++|... ..++-..+++++.+..+. |++.-..|...|-+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2333444444444444 333444444444444332 23333333333322
Q ss_pred cCChhHHHHHHHHHHh
Q 004791 531 EGKIDDAHSLLERMLS 546 (730)
Q Consensus 531 ~g~~~~A~~~~~~~~~ 546 (730)
++.+.+...|.++..
T Consensus 145 -ik~sk~a~~f~Ka~y 159 (711)
T COG1747 145 -IKKSKAAEFFGKALY 159 (711)
T ss_pred -hchhhHHHHHHHHHH
Confidence 444444444444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.20 E-value=6.7 Score=38.18 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=63.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDF 604 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 604 (730)
.+-|.++|++++|++.+...+... +-|.+++..-..+|.+..++..|..=-..++..+ ..-...|.--+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 456889999999999999887764 3488888888889999888887776666665432 11223344444444445666
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 004791 605 DHAHRLLDQMVSLGLKPD 622 (730)
Q Consensus 605 ~~A~~~~~~~~~~~~~p~ 622 (730)
.+|.+-++..+.. .|+
T Consensus 182 ~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHhHHHHHhh--Ccc
Confidence 6676666666654 454
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.07 E-value=2.4 Score=26.97 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 659 VTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
.+++.|+..|...|++++|..++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 467778888888888888888888775
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.93 E-value=15 Score=33.12 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=44.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPN-----SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE 601 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 601 (730)
-+.+.|++++|..-|...+..- ++. .+.|..-..++.+.+.++.|+.--.+.++.+ +.......--..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 3455666666666666655542 221 1223333344555566666666555555544 11222222334455555
Q ss_pred CCHHHHHHHHHHHHHC
Q 004791 602 GDFDHAHRLLDQMVSL 617 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~ 617 (730)
..+++|++-|.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6666666666666554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.57 E-value=9.4 Score=33.82 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCCHHH-------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-
Q 004791 534 IDDAHSLLERMLSDDCLPNSYTYNALIDGLY---RERKVQE-------ALLLVEKMTKMGVKPTVYTYTILIEEVLKEG- 602 (730)
Q Consensus 534 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~---~~~~~~~-------A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g- 602 (730)
++.|.+..+.....+ |.|...++.-..++. +.....+ |+.-|++.+... +....++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHh
Confidence 556677776655555 566666555444443 3444344 444445555433 234578888888886544
Q ss_pred ----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 603 ----------DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGI 654 (730)
Q Consensus 603 ----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 654 (730)
.+++|.+.|+++.. ..|+..+|+.-+... +.|-++..++.+++.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 25666667777666 478888888877665 357777777777654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.08 E-value=28 Score=30.37 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=9.3
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 004791 528 YCKEGKIDDAHSLLERMLS 546 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~ 546 (730)
+...|++.+|+.+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.99 E-value=39 Score=31.97 Aligned_cols=185 Identities=12% Similarity=0.107 Sum_probs=104.4
Q ss_pred CCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCcCHHHHHHHHHHHHhcC
Q 004791 461 EGHLDSAYKVLHLINESGLVPDQ---FTYSVFIDTLCKRGRVEEAQVLFDSLEKK---G--IKAGEVIYTALIDGYCKEG 532 (730)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g 532 (730)
..+.++|+.-|+...+....-.. .....++....+.+++++....+.++..- . -.-+....|.+++.-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34778888888887765333233 33445677778888888888888776531 0 1113445566666655555
Q ss_pred ChhHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCC-------HHHHHHHHH
Q 004791 533 KIDDAHSLLERMLSDD-CLPNS----YTYNALIDGLYRERKVQEALLLVEKMTKMGV----KPT-------VYTYTILIE 596 (730)
Q Consensus 533 ~~~~A~~~~~~~~~~~-~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~~~-------~~~~~~l~~ 596 (730)
+.+--.+.++.-++.- -..+. .|-..|...|...+.+.+..++++++...-. ..| ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 5555555555433210 00111 2334566667777777777777777664211 222 345666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH-----HHhcCCHHHHHHHH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLG-LKPDVYTYTAFIQA-----YCSIGKLDEAEDLI 646 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~ 646 (730)
+|..+++-.+...++++.+... --|.+... ..|+- ..+.|++++|-.-|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHH
Confidence 7777777777777777766522 12333222 23332 34567777776533
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.67 E-value=2.9 Score=26.51 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 624 YTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 624 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888887764
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.53 E-value=8.2 Score=37.23 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 004791 429 VHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLI 474 (730)
Q Consensus 429 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 474 (730)
.++++.++..=+.-|+-||.++++.+++.+.+.+++.+|..+...|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444444455555555555555555544444444333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.45 E-value=28 Score=29.87 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=9.4
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004791 633 YCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 633 ~~~~g~~~~A~~~~~~m~~ 651 (730)
+...|+|++|.++|++..+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3444555555555555544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.39 E-value=62 Score=33.83 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHhch
Q 004791 187 MKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAG-LSPDTFTYTSLILGYCRNKDVEKGFRVFMMMP 265 (730)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (730)
...+|+++... +..|+..|...+..+-+.+.+.+...+|.+|.... ..||..++.+. .-|-..-+++.|+.+|..-.
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHh
Confidence 34455555543 34588888888888877777888888888887653 33444333221 12223334788888887766
Q ss_pred hC
Q 004791 266 KK 267 (730)
Q Consensus 266 ~~ 267 (730)
+.
T Consensus 168 R~ 169 (568)
T KOG2396|consen 168 RF 169 (568)
T ss_pred hc
Confidence 53
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.81 E-value=52 Score=32.50 Aligned_cols=123 Identities=19% Similarity=0.097 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 004791 568 KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE-------GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS----I 636 (730)
Q Consensus 568 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 636 (730)
+..+|...|+++.+.|..+-..+...+...|..- -+...|...+.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5555566665555555222112222233322221 12236777777776655 33344444444432 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 637 GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG---------------LIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 637 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
.+.++|..+|++..+.|- ......+. .+...| +...|..++......|.........
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 367777888887777662 22233333 444444 7777888888887777666555555
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=82.62 E-value=34 Score=30.25 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 276 YTNLIHGLCEAKRVDEALDLFRRM 299 (730)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m 299 (730)
+..++..+...|++-+|.++.+..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 444555555666666666665554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.26 E-value=2.1 Score=25.41 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 663 LLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.++.++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555556666666666666654
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.12 E-value=86 Score=34.54 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=77.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPNSY--TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDF 604 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 604 (730)
++..-|+-++|..+.++|.... .|-.. -.-++..+|+-.|+.....+++.-.... +..|..-+..+.-++.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 4555677778888888887653 22111 1234556777788877777777665543 355666666666677777888
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 605 DHAHRLLDQMVSLGLKPDVY--TYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 605 ~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
+....+..-+.+. ..|-+. +--.|.-+|+-.|. .+|+.+++-|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 8888877766653 344332 22344555666664 789999999885
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.97 E-value=65 Score=33.05 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 487 SVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 563 (730)
..|+.-|...|+..+|...++++----+. ...++.+++.+.-+.|+-...+.+++..-..| ..|-+.|-.+|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf 584 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhh
Confidence 34555666677777777766665332221 45566777777777777666666666665554 34444454444
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.69 E-value=61 Score=32.57 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 004791 570 QEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS---IGKLDEAEDLI 646 (730)
Q Consensus 570 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 646 (730)
+.-+.+++++++.+ +.+......++..+.+..+.++..+-|++++..... +...|..+++.... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455555555553 344555555566666666666666666666654322 45555555544322 12344555544
Q ss_pred HHHHHC------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004791 647 VKMNRE------GI------VPD-----SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGC 689 (730)
Q Consensus 647 ~~m~~~------g~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 689 (730)
.+..+. +. .++ ...+..+...+...|..+.|+.+++-+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443321 11 000 11233334445667888888888887776655
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=81.50 E-value=65 Score=32.76 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 448 LITYNSLIYGQCREGHLDSAYKVLHLINESGLVP---DQFTYSVFIDTLCKRGRVEEAQVLFDSLEK 511 (730)
Q Consensus 448 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 511 (730)
..+|..++..+.+.|.++.|...+..+...+... ........+..+-..|+..+|...++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666666666666666666665533111 222333334445555666666666665555
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.20 E-value=25 Score=31.94 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 004791 622 DVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A 642 (730)
|+..+.+|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.14 E-value=2.9 Score=25.12 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=8.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 004791 664 LICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~m 684 (730)
++..|...|++++|.+.|++.
T Consensus 7 lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 7 LGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333
|
... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.37 E-value=19 Score=34.87 Aligned_cols=48 Identities=17% Similarity=0.347 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 603 DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 603 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
+.++++.++..=++.|+-||..+++.+++.+.+.|++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555544555555555555555555555555555555444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 730 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 4e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 94.9 bits (234), Expect = 4e-20
Identities = 25/225 (11%), Positives = 67/225 (29%), Gaps = 4/225 (1%)
Query: 201 PNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRV 260
P ++ ++ + + QA LS + + +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 261 FMM---MPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFG 317
++ +K Y ++ G E + + + + P + +Y +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 318 LCRVGRKSEALE-FFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFP 376
+ R + + +E +MS G + VL+ + + ++ P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 377 NVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELIC 421
V + L+ + + ++ +K+ C + + EL
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELAS 314
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 93.0 bits (229), Expect = 2e-19
Identities = 24/181 (13%), Positives = 61/181 (33%), Gaps = 4/181 (2%)
Query: 320 RVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNR---MLEKGLFP 376
+ S C +++ A LL +K
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 377 NVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMS-L 435
+ YNA++ G+ ++G + + +L ++K +P+ +Y + ++ +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 436 LNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCK 495
L ++ ++ L + L+ + R L + +KV + +P S + +
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 496 R 496
+
Sbjct: 284 K 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 90.6 bits (223), Expect = 9e-19
Identities = 30/210 (14%), Positives = 69/210 (32%), Gaps = 4/210 (1%)
Query: 430 HRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVF 489
A L + + SP L+ + LD +++ L Q F
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 490 IDTLCKRGRVEEAQVLFDSLEKKGIKAGE---VIYTALIDGYCKEGKIDDAHSLLERMLS 546
++ A L + K +Y A++ G+ ++G + +L +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 547 DDCLPNSYTYNALIDGLYR-ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFD 605
P+ +Y A + + R ++ +E+M++ G+K +L+ E +
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCS 635
H++ P + ++ +
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 87.2 bits (214), Expect = 8e-18
Identities = 31/217 (14%), Positives = 68/217 (31%), Gaps = 4/217 (1%)
Query: 502 AQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561
A L D + E L+ + +D + + A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 562 GLYRERKVQEALLLVEKMTKMGVK---PTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG 618
++ A L+ K T+ Y ++ ++G F +L + G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 619 LKPDVYTYTAFIQAYCSIGKLDEA-EDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSA 677
L PD+ +Y A +Q + E + +M++EG+ ++ +L+ ++ +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 678 FDVLKRMFDAGCEPSHHTYAFLIKHLSNKKVDERKQQ 714
V P + L++ + K +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.4 bits (212), Expect = 2e-17
Identities = 23/247 (9%), Positives = 60/247 (24%), Gaps = 33/247 (13%)
Query: 231 QAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVD 290
QA SP L+ ++ + + ++
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 144
Query: 291 EALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLI 350
A L + + + Y ++
Sbjct: 145 LAHHLLVVH--------------------------------HGQRQKRKLLTLDMYNAVM 172
Query: 351 DCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQ-ILDLMKSNNC 409
++ E +L + + GL P++++Y A + ++ ++ L+ M
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL 232
Query: 410 SPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYK 469
A L+ + + + P + + L+ + S K
Sbjct: 233 KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292
Query: 470 VLHLINE 476
+ +
Sbjct: 293 LHLPLKT 299
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.7 bits (192), Expect = 4e-15
Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 3/150 (2%)
Query: 565 RERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVY 624
R Q A L + + P L++E + D Q L
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 625 TYTAFIQAYCSIGKLDEAEDLIVK---MNREGIVPDSVTYTLLICAYAHLGLIYSAFDVL 681
AF + +L A L+V ++ + Y ++ +A G VL
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 682 KRMFDAGCEPSHHTYAFLIKHLSNKKVDER 711
+ DAG P +YA ++ + + D
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.4 bits (173), Expect = 6e-13
Identities = 28/250 (11%), Positives = 75/250 (30%), Gaps = 8/250 (3%)
Query: 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIV 230
+ + + L + V+ + + +N ++ G + G E + +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 231 QAGLSPDTFTYTSLILGYCR-NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRV 289
AGL+PD +Y + + R ++D R M ++G + + L+ A +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 290 DEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVL 349
+ P + ++ + + + + C + L
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMEL 312
Query: 350 IDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNC 409
+C + V++ + + + ++ L A + + ++
Sbjct: 313 ASRVCVVS-VEKPTLPSKEVKHARKTLKTLRD------QWEKALCRALRETKNRLEREVY 365
Query: 410 SPNARTYNEL 419
Y L
Sbjct: 366 EGRFSLYPFL 375
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.8 bits (148), Expect = 6e-10
Identities = 31/282 (10%), Positives = 73/282 (25%), Gaps = 31/282 (10%)
Query: 28 KSSSISSLPLPLDPDPPDLPSQIFTILSTHPTTWQRHTSITKLIPLLSPSHISSLFSLDL 87
+S +L L +P L Q+ L +L LL + ++
Sbjct: 53 QSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQ 112
Query: 88 NPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRN-NFTKASEKIVFLMLKSCSLDKEIL 146
P + + + + A
Sbjct: 113 APS-------GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH----------------- 148
Query: 147 FVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTF 206
+L + +L + YN +++ ++ E+ V + D + P++ ++
Sbjct: 149 -LLVVHHGQRQKRKLLTLDM----YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203
Query: 207 NTMINGCCKVGNVGEA-ELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMP 265
+ + E + ++ Q GL L+ R ++ +V
Sbjct: 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263
Query: 266 KKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPT 307
V+ + L+ + L + C
Sbjct: 264 LPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 1e-14
Identities = 97/667 (14%), Positives = 183/667 (27%), Gaps = 187/667 (28%)
Query: 62 QRHTSITKLIPLLSPSHISSLFSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIR 121
+ ++ + + F + + + D +
Sbjct: 13 EHQYQYKDILSVFEDA-----FVDNFDCKDVQDM------------------------PK 43
Query: 122 NNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESG-SEFSLKLSVKGYNTLLMQLSK 180
+ +K + + S L + L E +F ++ Y L+ +
Sbjct: 44 SILSKEEIDHI---IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 181 FHLVDEMKRV-YLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQA--GLSPD 237
M Y+E D + +N N NV + Y K+ QA L P
Sbjct: 101 EQRQPSMMTRMYIEQRDRL-------YND--NQVFAKYNVSRLQPY-LKLRQALLELRPA 150
Query: 238 TFTY---------TSLILGYCRNKDVEK--GFRVF-------------MMMPKKGCRRNE 273
T + L C + V+ F++F + M +K + +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 274 VSYTNLIHGLCEAK-RVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFN 332
++T+ K R+ RR+ + +P V L V + ++A FN
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKS--KPYENCLLV----LLNV-QNAKAWNAFN 263
Query: 333 EMSARGCEPNVHT-YTVLIDCLCKENKVDEASELLNRMLEK----GLFPNVVTYNALIDG 387
C+ + T + + D L + + + L L +
Sbjct: 264 ----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP---- 315
Query: 388 YCKEGLMEAALQILDL---MKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNL 444
+ L L + + + T++ C + SL L
Sbjct: 316 ---QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL------NVL 366
Query: 445 SPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLC---KRGRVEE 501
P R+ + L + S +P L +
Sbjct: 367 EPAEY----------RK-----MFDRLSVFPPSAHIPTI--------LLSLIWFDVIKSD 403
Query: 502 AQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561
V+ + L K SL+E+ P T + I
Sbjct: 404 VMVVVNKLHKY--------------------------SLVEKQ------PKESTIS--IP 429
Query: 562 GLYRERKVQ---EALL---LVEKMTKMGVKPTVYTYTILIEEVLKEGDFDH-AHRL--LD 612
+Y E KV+ E L +V+ P + LI L + + H H L ++
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYN----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 613 QMVSLGLKPDVYTYTAFIQA---------YCSIGKLDEAEDLIVKMNREGIVPDSVTYTL 663
+ L V+ F++ S L+ + L K + I + Y
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL--KFYKPYICDNDPKYER 543
Query: 664 LICAYAH 670
L+ A
Sbjct: 544 LVNAILD 550
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 1e-07
Identities = 46/300 (15%), Positives = 85/300 (28%), Gaps = 106/300 (35%)
Query: 25 PFCKSSSISSLPLPLDPDPPDLPSQIFTI-----------LSTHPTTWQ--RHTSITKL- 70
S L LD P DLP ++ T + TW +H + KL
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 71 ------IPLLSPSHIS------SLFSLDLN-PQTALDFSYWISQKPG------------- 104
+ +L P+ S+F + P L W
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMVVVNKLHKYS 415
Query: 105 --FKHSVESYSSLLNLLIRNNFTKASE-----KIV------------------------- 132
K ES S+ ++ + +E IV
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 133 FLM--LKSCSLDKEI-----LFV-LDFL-RRVNESGSEFSLKLSVKGYNTLLMQLSKF-- 181
+ LK+ + + +F+ FL +++ + ++ S+ L QL +
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI---LNTLQQLKFYKP 532
Query: 182 HLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSK---IVQAGLSPDT 238
++ D Y +++ I F + E L SK +++ L +
Sbjct: 533 YICDN-DPKYERLVN-----AILDF---LPKI-------EENLICSKYTDLLRIALMAED 576
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 44/299 (14%), Positives = 95/299 (31%), Gaps = 34/299 (11%)
Query: 391 EGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLE-----QNLS 445
+ A L+ + + L + + R+++L+ + +
Sbjct: 31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 90
Query: 446 PTLITYNSLIYGQCREGHLDSAY----KVLHLINESGLVPD---QFTYSVFIDTLCKRGR 498
L + +G L +A+ K LINE L +F + L R
Sbjct: 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 150
Query: 499 VEEAQVLF----DSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLS-------- 546
++EA+ + L + LI G +D+A S L R+ +
Sbjct: 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 210
Query: 547 DDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEV-LKEGDFD 605
D + N+ + + ++ L + + I + G+F+
Sbjct: 211 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 270
Query: 606 HAHRLLDQMVSLGLKPDVYTYTAFI-----QAYCSIGKLDEAEDLIVK----MNREGIV 655
A +L+++ + + Q Y G+ +A+ +++ NR G +
Sbjct: 271 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 329
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 30/231 (12%), Positives = 68/231 (29%), Gaps = 26/231 (11%)
Query: 469 KVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDG- 527
L + SV + L +G + + L E+ + Y
Sbjct: 39 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98
Query: 528 ----YCKEGKIDDAHSLLER---MLSDDCLPNS----YTYNALIDGLYRERKVQEALLLV 576
+G + A E+ ++++ L + L+ ++ EA
Sbjct: 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 158
Query: 577 EK----MTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKPDVYTYTA 628
++ + + +LI+ L GD D+A L+++ +L D +
Sbjct: 159 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218
Query: 629 FIQAYC--SIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSA 677
++ G A + + R P+ L + ++
Sbjct: 219 KVRVIYWQMTGDKAAAANWL----RHTAKPEFANNHFLQGQWRNIARAQIL 265
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 49/370 (13%), Positives = 98/370 (26%), Gaps = 67/370 (18%)
Query: 288 RVDEALDLFRRM--GEDDCRPTVRTYTVVIFGLCRV--GRKSEALEFFNEMSARGCEPNV 343
DEA L + R + G G + +L + + +V
Sbjct: 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88
Query: 344 HTYTVLIDC-----LCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAAL 398
Y + L + + A E E A
Sbjct: 89 WHYALWSLIQQSEILFAQGFLQTAWETQ----------------------------EKAF 120
Query: 399 QILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLE--QNLSPT--LITYNSL 454
Q+++ + + A + +E + P L L
Sbjct: 121 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180
Query: 455 IYGQCREGHLDSAYKVL----HLINESGLVPDQFTYS--VFIDTLCKRGRVEEAQVLFDS 508
I G LD+A L +L+ D + + V + G A
Sbjct: 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 240
Query: 509 LEKKGIKAGEVIYTA---LIDGYCKEGKIDDAHSLLERMLSD-------DCLPNSYTYNA 558
K + + G+ + A +LE + + L +
Sbjct: 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300
Query: 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG 618
+ ++ + +A ++ K+ T + +I EG + + L Q++ L
Sbjct: 301 QL--YWQAGRKSDAQRVLLDALKLA-NRTGFISHFVI-----EG--EAMAQQLRQLIQLN 350
Query: 619 LKPDVYTYTA 628
P++ + A
Sbjct: 351 TLPELEQHRA 360
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 61/425 (14%), Positives = 117/425 (27%), Gaps = 42/425 (9%)
Query: 274 VSYTNLIHGLCEAKRVDEALDLFRRMGE---DDCRPTVRTYTVVIFGLCRVGRKSEALEF 330
V+ + G + + L + + D V I G + L
Sbjct: 227 VAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ----VVAIASNIGGKQALETVQRLLPV 282
Query: 331 FNEMSARGCEPN-VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN-VVTYNALIDGY 388
+ A G P+ V V +L + L P+ VV + G
Sbjct: 283 LCQ--AHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG--LTPDQVVAIASHDGGK 338
Query: 389 CKEGLMEAALQILDLMKSNNCSPN-ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPT 447
++ + L +++ +P+ G + V R + +L + L+P
Sbjct: 339 QALETVQRL--LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPD 394
Query: 448 -LITYNSLIYGQCRE-GHLDSAYKVLHLINESGLVPDQF-TYSVFIDTLCKRGRVEEAQV 504
++ S G + + + L GL PDQ + V+
Sbjct: 395 QVVAIASN--GGKQALETVQRL--LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLP 450
Query: 505 LFD---SLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561
+ L + A + G + +L + + I
Sbjct: 451 VLCQTHGLTPAQVVA----IASHDGGKQALETVQQLLPVLCQAHGLT-PDQVVAIASNIG 505
Query: 562 GLYRERKVQEALLLVEKMTKMGVKPT-VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK 620
G VQ L ++ + G+ P V +L Q + GL
Sbjct: 506 GKQALATVQRLLPVLCQA--HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ--AHGLT 561
Query: 621 PD-VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAF 678
PD V + ++ + ++ + G+ V I L +
Sbjct: 562 PDQVVAIASNGGGKQALETVQRLLPVLCQA--HGLTQVQVVAIASNIGGKQALETVQRLL 619
Query: 679 DVLKR 683
VL +
Sbjct: 620 PVLCQ 624
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 4e-06
Identities = 65/429 (15%), Positives = 126/429 (29%), Gaps = 48/429 (11%)
Query: 269 CRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPT-VRTYTVVIFGLCRVGRKSEA 327
V+ + G + V L + + P V G +
Sbjct: 629 TPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--PDQVVAIASNGGGKQALETVQRL 686
Query: 328 LEFFNEMSARGCEPN-VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN-VVTYNALI 385
L + A G V V +L + L P+ VV +
Sbjct: 687 LPVLCQ--AHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHG--LTPDQVVAIASNG 742
Query: 386 DGYCKEGLMEAALQILDLMKSNNCSPN-ARTYNELICGFCKRKNVHRAMSLLNELLEQNL 444
G ++ L +L +++ +P I G + V R + +L + L
Sbjct: 743 GGKQALETVQRLLPVLC--QAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
Query: 445 SPTLITYNSLIYGQCREGHLDSAYKVLHLINE--SGLVPDQFTYSVFIDTLCKRGRVEEA 502
+ + +++ Q E + L + GL DQ + + ++A
Sbjct: 801 AQVVAIASNIGGKQALE-----TVQRLLPVLCQAHGLTQDQ------VVAIASNIGGKQA 849
Query: 503 QVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562
L + + + A ++R+L C + T + ++
Sbjct: 850 LETVQRLLPVLCQDHG-LTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAI 908
Query: 563 LYRERK-----VQEALLLVEKMTKMGVKPT---VYTYTILIEEVLKEGDFDHAHRLLDQM 614
K VQ L ++ + G+ P ++ L L
Sbjct: 909 ASNGGKQALETVQRLLPVLCQD--HGLTPDQVVAIASNSGGKQAL--ETVQRL--LPVLC 962
Query: 615 VSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLI 674
GL P+ + A S G E ++ +++R ++T + A A LG
Sbjct: 963 QDHGLTPN------QVVAIASNGGKQALESIVAQLSRPDPALAALT-NDHLVALACLGGR 1015
Query: 675 YSAFDVLKR 683
A D +K+
Sbjct: 1016 -PAMDAVKK 1023
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 1e-06
Identities = 38/264 (14%), Positives = 81/264 (30%), Gaps = 19/264 (7%)
Query: 290 DEALDLFRRMGEDDCRPTVRTYTVVIFGLCRV--GRKSEALEFFNEMSARGCEPNVHTYT 347
+ ++ +R+ P V + + L+ S P +
Sbjct: 16 QQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSS----APELQAVR 69
Query: 348 VLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALI-DGYCKEGLMEAALQILDLMKS 406
+ + L ++ D L+R + + + T+ + Y + +AAL+ L S
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129
Query: 407 NNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLI-TYNSLIYGQCREGHLD 465
C + K + A L ++ +Q+ TL + + L
Sbjct: 130 LEC------MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQ 183
Query: 466 SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALI 525
AY + + + P + +GR E A+ + K E + L+
Sbjct: 184 DAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI-NLV 241
Query: 526 DGYCKEGKIDDA-HSLLERMLSDD 548
GK + + L ++
Sbjct: 242 VLSQHLGKPPEVTNRYLSQLKDAH 265
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 6e-05
Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 22/191 (11%)
Query: 499 VEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNA 558
+ EAQ + S ++ ++ +Y A + + K ++ P
Sbjct: 19 INEAQRVKPSSPERDVERDVFLYRAYL----AQRKYGVVLDEIK----PSSAPELQAVRM 70
Query: 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVL-KEGDFDHAHRLLDQMVSL 617
+ L + + +++ V T T+ ++ + + + D A R L Q SL
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL 130
Query: 618 GLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGL---- 673
+Q + +LD A + KM D+ T T L A+ L
Sbjct: 131 EC------MAMTVQILLKLDRLDLARKELKKMQD--QDEDA-TLTQLATAWVSLAAGGEK 181
Query: 674 IYSAFDVLKRM 684
+ A+ + + M
Sbjct: 182 LQDAYYIFQEM 192
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 4e-06
Identities = 42/269 (15%), Positives = 87/269 (32%), Gaps = 37/269 (13%)
Query: 434 SLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINE--SGLVPDQ------FT 485
+ QN N L Y + +G ++A + L E DQ T
Sbjct: 37 KVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVT 96
Query: 486 YSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEG---------KIDD 536
+ + GR+ + Q+ D ++ K + C+EG + +
Sbjct: 97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNER 156
Query: 537 AHSLLERMLSDDCLPNSY-TYNALIDGLYR---ERKVQEALLLVEKMTKMGVK-PTVYTY 591
A E+ L P + + L YR Q A+ + + ++ +
Sbjct: 157 AKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214
Query: 592 --TILIEEVLKEGDFDHAHRLLDQMVSLGLKPD-VYTYTAFIQAYCSIGKLDEAEDLIVK 648
L + + + +L+++ +L P + + Y + D+A +L+ K
Sbjct: 215 LALKLHKMREEGEEEGEGEKLVEE--ALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKK 272
Query: 649 MNREGIVPDSVTYTLLICAYAHLGLIYSA 677
+P++ + +G Y A
Sbjct: 273 ALE--YIPNNAY------LHCQIGCCYRA 293
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 14/134 (10%), Positives = 33/134 (24%), Gaps = 5/134 (3%)
Query: 283 LCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPN 342
+A++ V V++G R ++ ++ +
Sbjct: 112 EAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYG--AAERWTDVIDQVKSAGKWPDKFL 169
Query: 343 VHTYTVLI-DCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGL--MEAALQ 399
V EA L + A + AA+
Sbjct: 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229
Query: 400 ILDLMKSNNCSPNA 413
+L+ +++ + P
Sbjct: 230 LLEWLQTTHPEPKV 243
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 51/379 (13%), Positives = 95/379 (25%), Gaps = 60/379 (15%)
Query: 272 NEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFF 331
V+ + G + V L + + V G + L
Sbjct: 139 QVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVV-AIASNGGGKQALETVQRLLPVL 197
Query: 332 NEMSARGCEPN-VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN-VVTYNALIDGYC 389
+ A G P V V +L + L P VV + G
Sbjct: 198 CQ--AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGKQ 253
Query: 390 KEGLMEAALQILDLMKSNNCSPN-ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTL 448
++ L L +++ +P G + V R + +L + L+P
Sbjct: 254 ALETVQRLLP--VLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG--LTPQQ 309
Query: 449 I-TYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFD 507
+ S G+ + + L GL P Q + + ++A
Sbjct: 310 VVAIASNGGGKQALETVQRL--LPVLCQAHGLTPQQ------VVAIASHDGGKQALETVQ 361
Query: 508 SLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSY-TYNALIDGLYRE 566
L+ C+ + P + G
Sbjct: 362 ---------------RLLPVLCQAHGLT---------------PEQVVAIASNGGGKQAL 391
Query: 567 RKVQEALLLVEKMTKMGVKPT-VYTYTILIEEVLKE-GDFDHAHRLLDQMVSLGLKPD-V 623
VQ L ++ + G+ P V + +L Q + GL P V
Sbjct: 392 ETVQRLLPVLCQA--HGLTPEQVVAIASHD-GGKQALETVQRLLPVLCQ--AHGLTPQQV 446
Query: 624 YTYTAFIQAYCSIGKLDEA 642
+ ++ +
Sbjct: 447 VAIASNGGGRPALESIVAQ 465
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 46/328 (14%), Positives = 97/328 (29%), Gaps = 44/328 (13%)
Query: 322 GRKSEALEFFNEMSARGCEPNVHT-YTVLIDCLCKENKVDEASELLNRMLEKGLFPNVV- 379
+EA++++ A +PN Y+ + C +++ E + LE + P+
Sbjct: 39 KNFNEAIKYYQY--AIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE--IKPDHSK 94
Query: 380 TYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNEL 439
G A+ L ++ N A +R +AM +LNE
Sbjct: 95 ALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIE-----PMLERNLNKQAMKVLNEN 149
Query: 440 LEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRV 499
L ++ L S + F + + ++
Sbjct: 150 LSKD-------EGRGSQVLPSNTSLASFFG-------------IFDSHLEVSSVNTSSNY 189
Query: 500 EEAQVLF-DSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSY-TYN 557
+ A L D+L++ E A S N+
Sbjct: 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR--ENAALALC 247
Query: 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL 617
+ + + +A +L+++ + PT +Y L + + + + + ++
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQK--AV 303
Query: 618 GLKP---DVYTYTAFIQAYCSIGKLDEA 642
L P Y + Q Y + A
Sbjct: 304 DLNPEYPPTYYHRG--QMYFILQDYKNA 329
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 32/198 (16%), Positives = 71/198 (35%), Gaps = 8/198 (4%)
Query: 495 KRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSY 554
+ +EA +++ +K ++Y A D K + HS+ R+L+ + + +
Sbjct: 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL 135
Query: 555 TYNALIDGLYRERKVQEALLLVEKMTKMG-VKPTVYTYTILIEEVLKEGDFDHAHRLLDQ 613
Y + R ++ ++ +K + + VY L+E D A ++ +
Sbjct: 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS-KDKSVAFKIFEL 194
Query: 614 MVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHL-- 671
+ A+I + + + L ++ G +P + + +
Sbjct: 195 GLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA-RFLAFES 252
Query: 672 --GLIYSAFDVLKRMFDA 687
G + S V KR F A
Sbjct: 253 NIGDLASILKVEKRRFTA 270
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 38/209 (18%), Positives = 78/209 (37%), Gaps = 25/209 (11%)
Query: 275 SYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRV----GRKSEALEF 330
S NL + E ++EA+ L+R+ E P + L V G+ EAL
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALE--VFP---EFAAAHSNLASVLQQQGKLQEALMH 65
Query: 331 FNEMSARGCEPN-VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN-VVTYNALIDGY 388
+ E A P Y+ + + L + V A + R ++ + P ++ L +
Sbjct: 66 YKE--AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIH 121
Query: 389 CKEGLMEAALQILDLMKSNNCSPN--------ARTYNELICGFCKRKNVHRAMSLLNELL 440
G + A+ + P+ A + + + + +S++ + L
Sbjct: 122 KDSGNIPEAIASYR--TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179
Query: 441 EQNLSPTLITYNSLIYGQCREGHLDSAYK 469
E+N P++ ++S++Y A +
Sbjct: 180 EKNRLPSVHPHHSMLYPLSHGFRKAIAER 208
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 730 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.13 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.09 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.03 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.02 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.02 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.98 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.92 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.87 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.87 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.86 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.83 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.79 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.75 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.7 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.69 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.67 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.67 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.65 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.64 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.61 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.56 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.56 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.55 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.54 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.54 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.48 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.46 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.46 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.44 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.44 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.42 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.41 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.37 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.31 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.31 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.25 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.22 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.16 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.13 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.13 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.11 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.08 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.07 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.04 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.03 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.0 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.99 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.98 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.88 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.85 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.83 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.82 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.78 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.74 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.59 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.57 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.47 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.29 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.19 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.19 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.99 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.97 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.92 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.88 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.69 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.66 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.52 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.51 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.44 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.43 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.27 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.26 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.23 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.2 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.12 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.9 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.85 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.7 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.49 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.39 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.32 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.28 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.9 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.73 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.69 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.49 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.11 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.87 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.92 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.23 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.99 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.75 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.6 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.43 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.34 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.27 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.35 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.17 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.1 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.42 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.24 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.0 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.85 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.83 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.25 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.95 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.89 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.98 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.42 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=380.44 Aligned_cols=499 Identities=11% Similarity=0.007 Sum_probs=347.3
Q ss_pred cCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004791 166 LSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLI 245 (730)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 245 (730)
+++..|+.++..|.+.|++++|+.+|++|++ ..|+..++..++.+|.+.|++++|..+|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 3455566666666666666666666666653 2345555566666666666666666666655432 34555666666
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 004791 246 LGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKS 325 (730)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (730)
.+|.+.|++++|+++|+++.... .. ..++.+.++ ...+.+++..+|+.++.+|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~----~~-----~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFR----KD-----EKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC-------------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCCcc----cc-----ccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHH
Confidence 66666666666666665322110 00 000000000 11133445677777777777777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 004791 326 EALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEAS--EL-LNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILD 402 (730)
Q Consensus 326 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~--~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 402 (730)
+|++.|++|.+.++. +...+..++..+...+..+.+. .+ +..+...+......+|+.++..|.+.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 777777777766433 4455555554443332222211 11 4444444444445566666777778888888888888
Q ss_pred HHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 004791 403 LMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPD 482 (730)
Q Consensus 403 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 482 (730)
++.+. +++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..+++.++..+.+.|++++|.++++++.+.. +.+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 77765 4677888888888888888888888888887654 2366778888888888888888888888877543 346
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
..++..++.+|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 778888888888888888888888888776443 67788888888888888999988888888765 5577888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhc
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKPD--VYTYTAFIQAYCSI 636 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~ 636 (730)
|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 989999999999999888765 457888889999999999999999999988875 55676 77899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 004791 637 GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH-TYAFL 699 (730)
Q Consensus 637 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 699 (730)
|++++|.++++++.+.+ +.+..+|..++.+|.+.|++++|.++|+++++. .|+.. .+..+
T Consensus 530 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l 590 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLL 590 (597)
T ss_dssp TCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 99999999999988854 347888999999999999999999999999875 55543 34333
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-42 Score=378.97 Aligned_cols=504 Identities=11% Similarity=-0.019 Sum_probs=408.9
Q ss_pred HHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 004791 128 SEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFN 207 (730)
Q Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (730)
....+..++..+...++...+...+.++. ...|+..++..++.+|.+.|++++|+.+|+++... .++..+++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 154 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVL------DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRY 154 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHH------hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHH
Confidence 44567788888888899999999999886 25678899999999999999999999999998653 67899999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcC
Q 004791 208 TMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAK 287 (730)
Q Consensus 208 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 287 (730)
.++.+|.+.|++++|..+|+++. |+.. ....+.+.++ ...+.+.+..+|+.++.+|.+.|
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHhccC-----Cccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcC
Confidence 99999999999999999998532 2210 0111111111 12345677888999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004791 288 RVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALE--F-FNEMSARGCEPNVHTYTVLIDCLCKENKVDEASE 364 (730)
Q Consensus 288 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 364 (730)
++++|.++|++|.+.+ +.+...+..++..+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.+
T Consensus 215 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 215 NFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 9999999999988764 3345566666555443333222211 1 4555555555556677778888999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 365 LLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNL 444 (730)
Q Consensus 365 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 444 (730)
+|+++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++..+.+.|++++|..+++++.+..
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 99998775 4688999999999999999999999999998765 4578889999999999999999999999998653
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 004791 445 SPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTAL 524 (730)
Q Consensus 445 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 524 (730)
+.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+.++. +..+|..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHH
Confidence 4578889999999999999999999999988753 336789999999999999999999999999887654 78899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM----GVKPT--VYTYTILIEEV 598 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~--~~~~~~l~~~~ 598 (730)
+.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 999999999999999999998865 567899999999999999999999999999875 55677 78999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 599 LKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 669 (730)
.+.|++++|.++|+++.+.++ .+..+|..++.+|.+.|++++|.+.++++.+.. +.+...+..+..+|.
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRALE 595 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 999999999999999998753 388899999999999999999999999999853 235777777766553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-28 Score=251.72 Aligned_cols=376 Identities=14% Similarity=0.044 Sum_probs=167.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004791 284 CEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEAS 363 (730)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 363 (730)
.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+..+. +..+|..+...+.+.|++++|.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 33444444444444443332 222333333334444444444444444444333211 3334444444444444444444
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 364 ELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQN 443 (730)
Q Consensus 364 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 443 (730)
..|+++.+..+ .+..+|..++.++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++++..
T Consensus 88 ~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 88 EHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 44444443211 122334444444444444444444444443331 1122233333334444444444444444444321
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 004791 444 LSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTA 523 (730)
Q Consensus 444 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 523 (730)
+.+..+|..+...+...|++++|.+.|+++.+.+. .+...+..+...+...|++++|...+++..+..+. +..++..
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 242 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGN 242 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHH
Confidence 11233444444444444444444444444443321 12334444444444445555555555444444322 3444555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 004791 524 LIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD 603 (730)
Q Consensus 524 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 603 (730)
+..+|.+.|++++|+..++++++.+ +.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..++..+...|+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCC
Confidence 5555555555555555555555443 2334455555555555555555555555555432 3445555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 004791 604 FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHL 671 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~ 671 (730)
+++|.+.++++++.. +.+..++..++.+|.+.|++++|.+.++++.+. .| +...|..++..+...
T Consensus 321 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 321 IEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHc
Confidence 555555555555432 123445555555555555555555555555542 23 344454444444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-28 Score=250.80 Aligned_cols=379 Identities=13% Similarity=0.057 Sum_probs=224.4
Q ss_pred HHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004791 248 YCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEA 327 (730)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 327 (730)
+.+.|++++|.+.++.+.+.. |.+...+..+...+.+.|++++|...++...+.. +.+..+|..++..+.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 334444444444444443321 2233344444444455555555555555444432 33444555555555555555555
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004791 328 LEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSN 407 (730)
Q Consensus 328 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (730)
++.|+++.+..+. +..+|..++.++.+.|++++|...|+++.+..+. +...+..+...+...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5555555544222 3344555555555555555555555555544221 3334444555555555555555555555544
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHH
Q 004791 408 NCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYS 487 (730)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (730)
. +.+..+|..+...+...|++++|...|+++++.+ +.+...+..+...+...|++++|...+++..+.. +.+..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 2 2334555555566666666666666666665542 2244556666666667777777777776666543 22456666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004791 488 VFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRER 567 (730)
Q Consensus 488 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 567 (730)
.+...+...|++++|...|+++.+.++. +..+|..+..++.+.|++++|+..++++++.. +.+..++..+...+.+.|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 6777777777777777777777766443 55667777777777777777777777777654 556777777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 568 KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 568 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
++++|...++++.+.. +.+..++..++..+.+.|++++|.+.|+++++..+. +...|..+...+...|
T Consensus 320 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 7888877777777653 455677777777777888888888888877765322 5666666666665554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=267.25 Aligned_cols=204 Identities=18% Similarity=0.283 Sum_probs=116.4
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC---------hhH
Q 004791 187 MKRVYLEMLDNMVVPNI-YTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKD---------VEK 256 (730)
Q Consensus 187 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~~~ 256 (730)
+..+.+++.+.+..+.. ..++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44444555555444332 34666677777777777777777777777777777777777777765544 345
Q ss_pred HHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 257 GFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA 336 (730)
Q Consensus 257 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (730)
|.++|++|...|+.||.++|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55566666555555566666666666666666666666666665555555666666666666666666666666666655
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004791 337 RGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCK 390 (730)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 390 (730)
.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555566666666666666666666666666666555555555555555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=261.07 Aligned_cols=207 Identities=18% Similarity=0.275 Sum_probs=168.2
Q ss_pred HHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 004791 502 AQVLFDSLEKKGIKAGE-VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERK---------VQE 571 (730)
Q Consensus 502 A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---------~~~ 571 (730)
+..+.+++.+++....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455555555544333 35677788888888888888888888888888888888888888876543 678
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 572 ALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 572 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCh
Q 004791 652 EGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKKV 708 (730)
Q Consensus 652 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~~ 708 (730)
.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..++..+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a 225 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVA 225 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999998886543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-25 Score=238.27 Aligned_cols=280 Identities=14% Similarity=0.018 Sum_probs=214.3
Q ss_pred hcHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 004791 414 RTYNELICGFCK---RKNVHRAMSLLNELLE-----QNL--------SPTLITYNSLIYGQCREGHLDSAYKVLHLINES 477 (730)
Q Consensus 414 ~~~~~li~~~~~---~~~~~~A~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 477 (730)
..+..+...+.. .|++++|...++++++ ... +.+...+..++..+...|++++|...++++.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 334444443443 6778888888877776 211 123456777788888888888888888888776
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 004791 478 GLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYN 557 (730)
Q Consensus 478 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 557 (730)
... ...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++++.+.. +.+...+.
T Consensus 267 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 342 (514)
T 2gw1_A 267 FPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYI 342 (514)
T ss_dssp CCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHH
T ss_pred Ccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHH
Confidence 433 777888888888888888888888888877544 66788888888889999999999999888765 44667888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHH
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK-PD----VYTYTAFIQA 632 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~ 632 (730)
.+...+...|++++|...++++.+.. +.+..++..++..+...|++++|.+.++++.+.... ++ ...+..++.+
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 88888888999999999999888754 446778888888999999999999999888774322 11 3478888888
Q ss_pred HHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004791 633 YCS---IGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIK 701 (730)
Q Consensus 633 ~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 701 (730)
+.. .|++++|.+.++++.+.. +.+..++..++.+|...|++++|.+.|+++.+. .|+.......+.
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 490 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQAIT 490 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHHHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHHHHH
Confidence 888 899999999999988753 336788888999999999999999999999875 566655444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-24 Score=233.45 Aligned_cols=273 Identities=11% Similarity=-0.036 Sum_probs=219.9
Q ss_pred hhhHHHHHHHHHh---CCCHHHHHHHHHHHHh-----CCC--------CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 378 VVTYNALIDGYCK---EGLMEAALQILDLMKS-----NNC--------SPNARTYNELICGFCKRKNVHRAMSLLNELLE 441 (730)
Q Consensus 378 ~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 441 (730)
...+..+...+.. .|++++|..+|+++.+ ... +.+..++..+...+...|++++|...++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444444554 7888888888888876 311 12345677788888899999999999999887
Q ss_pred CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHH
Q 004791 442 QNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIY 521 (730)
Q Consensus 442 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 521 (730)
.... ...+..++..+...|++++|.+.++.+.+... .+...+..+...+...|++++|...++++.+..+. +...+
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 341 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPY 341 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHH
Confidence 6533 77888888999999999999999999887643 35667888888999999999999999999887654 67788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHH
Q 004791 522 TALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGV-KPT----VYTYTILIE 596 (730)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~~~----~~~~~~l~~ 596 (730)
..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+... .++ ...+..++.
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 889999999999999999999988764 45677888899999999999999999999886421 111 348888999
Q ss_pred HHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 597 EVLK---EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 597 ~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
.+.. .|++++|.+.++++++... .+..++..++.+|.+.|++++|.+.++++.+. .|+.
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 9999 9999999999999988653 36788899999999999999999999999984 4653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-23 Score=224.75 Aligned_cols=441 Identities=14% Similarity=0.046 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHH
Q 004791 204 YTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGL 283 (730)
Q Consensus 204 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 283 (730)
..+..+...+.+.|++++|...|+++++..+ .+..++..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3455555556666666666666666655432 244555555555555555555555555555432 23444555555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHH
Q 004791 284 CEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGC--EPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~ 361 (730)
...|++++|.+.|+.+ ... |+. ....+..+...+...+|...++++....+ .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 5555555555555422 111 111 11112223333334445555554433210 0011111222223333333333
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 362 ASELLNRMLEKGLFPN-VVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELL 440 (730)
Q Consensus 362 A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 440 (730)
+...+...... .+. ......+...+...+ .......|++++|..++++++
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 179 EVSSVNTSSNY--DTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc--ccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHHHHH
Confidence 33222221111 000 001111111111110 000001124555555555555
Q ss_pred HCCCCCC-------hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 441 EQNLSPT-------LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKG 513 (730)
Q Consensus 441 ~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 513 (730)
+.... + ..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...++++.+..
T Consensus 230 ~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 230 SANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp C--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 43211 1 1234444555556666666666666665542 335555556666666666666666666666554
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004791 514 IKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTI 593 (730)
Q Consensus 514 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 593 (730)
+. +..++..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 307 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 383 (537)
T 3fp2_A 307 PE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTF 383 (537)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 33 45566666666666666666666666666543 3344566666666666666666666666666543 344556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCH
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSLGLK-----PDVYTYTAFIQAYCSI----------GKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
+...+...|++++|.+.|+++++.... .....+..+..++... |++++|...++++.+.. +.+.
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~ 462 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSE 462 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCH
Confidence 666666666666666666666553110 1122233444555555 66777777777766643 2345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 659 VTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
.++..++.+|...|++++|.+.|++.++.
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666667777777777777777776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-22 Score=215.38 Aligned_cols=314 Identities=15% Similarity=0.105 Sum_probs=157.6
Q ss_pred cChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 004791 271 RNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLI 350 (730)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 350 (730)
.+...+..++..+.+.|++++|+++|+++.+.. +.+..+|..++.++...|++++|++.|+++.+.++. +..++..++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 344555556666666666666666666655442 334555555666666666666666666665554332 455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcC
Q 004791 351 DCLCKENKVDEASELLNRMLEKGLFPNV---VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRK 427 (730)
Q Consensus 351 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 427 (730)
.+|.+.|++++|...|+++.+.... +. ..+..++..+... .+..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 5555555555555555555553211 22 3333333321110 1112233345556
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 004791 428 NVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFD 507 (730)
Q Consensus 428 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 507 (730)
++++|+..++++.+.. +.+...+..++..+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665532 2345555566666666666666666666655432 2245555556666666666666666666
Q ss_pred HHHHcCCCcCHHHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHH
Q 004791 508 SLEKKGIKAGEVIYTAL------------IDGYCKEGKIDDAHSLLERMLSDDCLPN-----SYTYNALIDGLYRERKVQ 570 (730)
Q Consensus 508 ~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~ 570 (730)
++.+..+. +...+..+ +..+.+.|++++|+..|+++++.. |+ ...+..+...+.+.|+++
T Consensus 236 ~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHH
Confidence 66554322 22233222 444444555555555555544432 22 223444444444455555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 571 EALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 571 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
+|+..++++.+.. +.+..+|..++.+|...|++++|.+.++++++
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5555554444432 22344444444444455555555555544444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-22 Score=212.75 Aligned_cols=387 Identities=15% Similarity=0.073 Sum_probs=285.2
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 291 EALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRML 370 (730)
Q Consensus 291 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 370 (730)
.+...+.+....+ +.+...+..++..+.+.|++++|+.+|+++.+..+. +..++..++.++...|++++|...|++++
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455554443 456677788888888888888888888888776433 67778888888888888888888888887
Q ss_pred HCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh---hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 371 EKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA---RTYNELICGFCKRKNVHRAMSLLNELLEQNLSPT 447 (730)
Q Consensus 371 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 447 (730)
+.+.. +..++..++..|.+.|++++|.+.|+++.+.+ +.+. ..+..++..+..
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~---------------------- 143 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM---------------------- 143 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH----------------------
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH----------------------
Confidence 76433 56777778888888888888888888877653 2223 444444443211
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 004791 448 LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDG 527 (730)
Q Consensus 448 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 527 (730)
..+..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++.+..+. +..++..++.+
T Consensus 144 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 -QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTL 220 (450)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 123344556788999999999999998864 347888999999999999999999999999887544 78899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNSYTYNAL------------IDGLYRERKVQEALLLVEKMTKMGVKPT-----VYT 590 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~ 590 (730)
|...|++++|+..++++.... +.+...+..+ ...+.+.|++++|...|+++.+.. |+ ...
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~ 297 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRS 297 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHH
Confidence 999999999999999998765 4455555555 788999999999999999999853 43 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH--
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICA-- 667 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~-- 667 (730)
+..++.++.+.|++++|++.++++++..+ .+...|..++.+|...|++++|...++++.+. .| +...+..+..+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHH
Confidence 88899999999999999999999988642 37889999999999999999999999999984 45 56777777633
Q ss_pred ----------HHhcC-----CHHHHHHHHHHH-HHcCCCCC----H-------HHHHHHHHHHHcCChhhhhhh
Q 004791 668 ----------YAHLG-----LIYSAFDVLKRM-FDAGCEPS----H-------HTYAFLIKHLSNKKVDERKQQ 714 (730)
Q Consensus 668 ----------~~~~g-----~~~~A~~~~~~m-~~~g~~p~----~-------~~~~~l~~~l~~~~~~e~~~~ 714 (730)
|...| +.+++.+.|+++ ++. .|| . ..+..+..++-..++.+..+.
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 43444 567778888874 332 333 1 255666666666666655443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-22 Score=216.68 Aligned_cols=442 Identities=10% Similarity=0.029 Sum_probs=264.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004791 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLIL 246 (730)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 246 (730)
....|..+...+.+.|++++|+..|+++++.. +.+..++..+..+|.+.|++++|+..|+++++.++ .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 46778899999999999999999999999864 34778999999999999999999999999998753 46888999999
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCH
Q 004791 247 GYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDD--CRPTVRTYTVVIFGLCRVGRK 324 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~ 324 (730)
.+.+.|++++|...|+.+.. . |+ .....+..+...+...+|...++++.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~-~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL-N--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc-C--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999974432 1 22 22334556667777889999999997642 111122233445556667777
Q ss_pred HHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHH
Q 004791 325 SEALEFFNEMSARGCEPNVH-TYTVLIDCLCKE--------NKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLME 395 (730)
Q Consensus 325 ~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~--------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 395 (730)
+.+...+...... .+... ....+...+... |++++|..+++++.+.... +...+..+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~----------- 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA----------- 242 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH-----------
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH-----------
Confidence 7766655443321 11111 223333322221 3556666666666554221 21111100
Q ss_pred HHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 004791 396 AALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLIN 475 (730)
Q Consensus 396 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 475 (730)
..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|.+.++++.
T Consensus 243 -----------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 243 -----------------ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 1122233333444444455555444444432 234444445555555555555555555554
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 004791 476 ESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYT 555 (730)
Q Consensus 476 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 555 (730)
+.. +.+..++..+...+...|++++|...++++.+..+. +...+..+..++...|++++|...++++.+.. +.+...
T Consensus 304 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 380 (537)
T 3fp2_A 304 DLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV 380 (537)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred ccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 432 123445555555666666666666666666555433 44556666666666666666666666666543 344556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCC
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTKMG-----VKPTVYTYTILIEEVLKE----------GDFDHAHRLLDQMVSLGLK 620 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 620 (730)
+..+...+...|++++|...++++.+.. .......+......+... |++++|...|+++++..+
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p- 459 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP- 459 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-
Confidence 6666666666667777766666665421 111122233444556666 777777777777776543
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 621 PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 621 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
.+...+..++.+|.+.|++++|.+.|+++.+.
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 25667777777777777777777777777763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-18 Score=183.83 Aligned_cols=351 Identities=13% Similarity=0.051 Sum_probs=180.1
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCh
Q 004791 272 NEVSYTNLIHGLCE----AKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR----VGRKSEALEFFNEMSARGCEPNV 343 (730)
Q Consensus 272 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~ 343 (730)
+..++..+...|.. .+++++|++.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555556666655 566666666666665543 44555556666655 566666666666665543 44
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCChhc
Q 004791 344 HTYTVLIDCLCK----ENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCK----EGLMEAALQILDLMKSNNCSPNART 415 (730)
Q Consensus 344 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 415 (730)
..+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 455555555555 556666666666655543 44455555555554 455566666665555543 4455
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHhHH
Q 004791 416 YNELICGFCK----RKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCR----EGHLDSAYKVLHLINESGLVPDQFTYS 487 (730)
Q Consensus 416 ~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (730)
+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5555555554 555555555555555543 33444445555443 455555555555555432 233444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHH
Q 004791 488 VFIDTLCK----RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKE-----GKIDDAHSLLERMLSDDCLPNSYTYNA 558 (730)
Q Consensus 488 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~ 558 (730)
.+...|.. .++.++|...|++..+.+ +...+..+...|... +++++|+..+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 44444444 455555555555554443 333444444444444 45555555555554443 2334444
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 559 LIDGLYRER---KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK----EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 559 li~~~~~~~---~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
+...|...| +.++|+++|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444333 4445555555554432 34444444444444 445555555555554432 2334444444
Q ss_pred HHHh----cCCHHHHHHHHHHHHHC
Q 004791 632 AYCS----IGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 632 ~~~~----~g~~~~A~~~~~~m~~~ 652 (730)
.|.. .+++++|..+|++..+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4444 44555555555555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-18 Score=180.16 Aligned_cols=351 Identities=15% Similarity=0.102 Sum_probs=158.2
Q ss_pred CHHhHHHHHHHHHh----cCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCh
Q 004791 237 DTFTYTSLILGYCR----NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCE----AKRVDEALDLFRRMGEDDCRPTV 308 (730)
Q Consensus 237 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~ 308 (730)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 33444444444444 444555555554444432 33444444444444 444555555555444433 33
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhh
Q 004791 309 RTYTVVIFGLCR----VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCK----ENKVDEASELLNRMLEKGLFPNVVT 380 (730)
Q Consensus 309 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~ 380 (730)
..+..+...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444444444444 444555555554444432 33344444444443 444555555555444432 3444
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHH
Q 004791 381 YNALIDGYCK----EGLMEAALQILDLMKSNNCSPNARTYNELICGFCK----RKNVHRAMSLLNELLEQNLSPTLITYN 452 (730)
Q Consensus 381 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 452 (730)
+..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4444444444 444555555554444432 33344444444443 444555555555444432 233344
Q ss_pred HHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 004791 453 SLIYGQCR----EGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKR-----GRVEEAQVLFDSLEKKGIKAGEVIYTA 523 (730)
Q Consensus 453 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ 523 (730)
.+...+.. .++.++|++.|++..+.| +...+..+...|... ++.++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 44444444 444555555554444432 233334444444443 44555555555444443 2334444
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 524 LIDGYCKEG---KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR----ERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 524 li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
+...|.+.| +.++|+.+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444433 4444555555444432 34444444444444 444555555555444432 2334444444
Q ss_pred HHHH----cCCHHHHHHHHHHHHHC
Q 004791 597 EVLK----EGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 597 ~~~~----~g~~~~A~~~~~~~~~~ 617 (730)
.|.. .+++++|.+.|++..+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4444 44555555555554443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.5e-19 Score=180.24 Aligned_cols=343 Identities=14% Similarity=0.043 Sum_probs=165.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004791 273 EVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDC 352 (730)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 352 (730)
+..+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+...|++++|+..|+++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3445555555556666666666665555443 234455555555555555555555555555554322 44455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHH
Q 004791 353 LCKENKVDEASELLNRMLEKGLF--PNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVH 430 (730)
Q Consensus 353 ~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 430 (730)
+...|++++|...|+++.+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55555555555555555543210 01222222211000 001111233344444444
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 431 RAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLE 510 (730)
Q Consensus 431 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 510 (730)
+|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444331 1233344444444444444444444444444332 1233344444444444444444444444444
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--
Q 004791 511 KKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTV-- 588 (730)
Q Consensus 511 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-- 588 (730)
+..+. +...+..+.. +. .......+...+.+.|++++|...++++.+.. +.+.
T Consensus 216 ~~~~~-~~~~~~~~~~-----------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 270 (359)
T 3ieg_A 216 KLDQD-HKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEY 270 (359)
T ss_dssp HHCTT-CHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHH
T ss_pred hhCcc-chHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHH
Confidence 33221 1111111000 00 00011123445666677777777777766543 2222
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 004791 589 --YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLI 665 (730)
Q Consensus 589 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~ 665 (730)
..+..+..++...|++++|.+.++++++..+ .+..+|..++.++...|++++|.+.++++.+. .| +...+..+.
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 347 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHH
Confidence 2244466677777777777777777776532 25667777777777777777777777777764 34 355566665
Q ss_pred HHHHh
Q 004791 666 CAYAH 670 (730)
Q Consensus 666 ~~~~~ 670 (730)
.+...
T Consensus 348 ~~~~~ 352 (359)
T 3ieg_A 348 KAQRL 352 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-19 Score=180.72 Aligned_cols=214 Identities=12% Similarity=-0.011 Sum_probs=143.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 004791 237 DTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIF 316 (730)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 316 (730)
|+..+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.+ +.+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678888999999999999999999998754 4568899999999999999999999999998864 446789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCH
Q 004791 317 GLCRVGRKSEALEFFNEMSARGCE--PNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLM 394 (730)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 394 (730)
.+...|++++|.+.|+++.+..+. .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999986431 13444444421100 01122233444555555
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 004791 395 EAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLI 474 (730)
Q Consensus 395 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 474 (730)
++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554432 2344445555555555555555555555555432 224455555555555666666666666555
Q ss_pred HhC
Q 004791 475 NES 477 (730)
Q Consensus 475 ~~~ 477 (730)
.+.
T Consensus 215 ~~~ 217 (359)
T 3ieg_A 215 LKL 217 (359)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-16 Score=176.81 Aligned_cols=534 Identities=14% Similarity=0.130 Sum_probs=329.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHccc---ChhhHH--HHHHHHHHHhhcCCccccccCHHhHHHHHHHHHhcC
Q 004791 108 SVESYSSLLNLLIRNNFTKASEKIVFLMLKSCS---LDKEIL--FVLDFLRRVNESGSEFSLKLSVKGYNTLLMQLSKFH 182 (730)
Q Consensus 108 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (730)
++.--...++.+...|.+.+|..+++.++.... .+.+.. .++..++.-...+.++....+-.....+...+...|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 333344556666677777777777776663322 111111 111111110000000001112222445677788899
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004791 183 LVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFM 262 (730)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 262 (730)
++++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++|++.|.
T Consensus 1064 lyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999987521 1222233322 668899999888866 246788899999999999999999996
Q ss_pred hchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 263 MMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPN 342 (730)
Q Consensus 263 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 342 (730)
+. .|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|.+.+++++...+ ++ .++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCC
Confidence 64 567788889999999999999999998877764 3333344588899999888854333 22 346
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHH
Q 004791 343 VHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICG 422 (730)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 422 (730)
...|..+...|...|++++|..+|... ..|..++..|++.|++++|.+.+++.. +..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 667778999999999999999999885 378889999999999999999998763 67888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc--CCHH
Q 004791 423 FCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKR--GRVE 500 (730)
Q Consensus 423 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~ 500 (730)
|...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +.....|..+...+++. ++..
T Consensus 1260 cve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 999999888887765432 356667788999999999999999998877654 33445566666666653 4555
Q ss_pred HHHHHHHHHHHcCC----CcCHHHHHHHHHHHHhcCChhHHHHHH-------------HHHHhCCCCCCHHHHHHHHHHH
Q 004791 501 EAQVLFDSLEKKGI----KAGEVIYTALIDGYCKEGKIDDAHSLL-------------ERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 501 ~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~-------------~~~~~~~~~p~~~~~~~li~~~ 563 (730)
++.++|..-..... --+...|..++..|.+.|+++.|.... ...+. ...|...|...+..|
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fy 1411 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFY 1411 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHH
Confidence 66666654332100 014567889999999999999887322 22221 134666666666666
Q ss_pred HhcC---------------CHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 004791 564 YRER---------------KVQEALLLVEKMTKM----------GVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSL- 617 (730)
Q Consensus 564 ~~~~---------------~~~~A~~~~~~m~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 617 (730)
.... +.+++.++|.+.-.. ....+...-..+.+.+...++++.-+.-.+..-..
T Consensus 1412 l~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd 1491 (1630)
T 1xi4_A 1412 LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFD 1491 (1630)
T ss_pred HhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcC
Confidence 6544 566666555521100 00112222223333333333333221111111000
Q ss_pred ------CC-CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004791 618 ------GL-KPDVYTYTAFI-QAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGC 689 (730)
Q Consensus 618 ------~~-~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 689 (730)
.+ +-+..-+..+. ..|.+.|+|+.|.+++++... |.-.+....++|+.+.+.+++.-..+.|
T Consensus 1492 ~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l---------~~dAm~~a~~S~d~e~~e~ll~~F~~~~- 1561 (1630)
T 1xi4_A 1492 NISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL---------YKDAMQYASESKDTELAEELLQWFLQEE- 1561 (1630)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC---------HHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 00 01121223333 334455888888877765432 3344566777788877777777666542
Q ss_pred CCCHHHHHHHHHHHHc
Q 004791 690 EPSHHTYAFLIKHLSN 705 (730)
Q Consensus 690 ~p~~~~~~~l~~~l~~ 705 (730)
+..+|...+-.++.
T Consensus 1562 --~~E~f~a~Ly~cy~ 1575 (1630)
T 1xi4_A 1562 --KRECFGACLFTCYD 1575 (1630)
T ss_pred --ChhHHHHHHHHHhc
Confidence 33445544444433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-17 Score=179.69 Aligned_cols=218 Identities=14% Similarity=0.121 Sum_probs=161.7
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 004791 466 SAYKVLHLINESGLVPDQFTYSVFIDTLCK-------RGRVE-------EAQVLFDSLEKKGIKAGEVIYTALIDGYCKE 531 (730)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 531 (730)
++..+|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5666777766642 3356677777766664 67766 8888888888621233677888888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 004791 532 GKIDDAHSLLERMLSDDCLPNS-YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE-VLKEGDFDHAHR 609 (730)
Q Consensus 532 g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~ 609 (730)
|++++|..+|+++++.. +.+. ..|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +...|+.++|..
T Consensus 335 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHH
Confidence 99999999999888854 2233 578888888888889999999999888753 2233333332222 336899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 610 LLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IVP--DSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+|++.++..+ .+...|..++..+.+.|+.++|..+|++....+ ..| ....|...+......|+.+.+.++++++.+
T Consensus 413 ~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 413 IFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999888643 267888899999999999999999999998863 122 245788888888888999999999998876
Q ss_pred c
Q 004791 687 A 687 (730)
Q Consensus 687 ~ 687 (730)
.
T Consensus 492 ~ 492 (530)
T 2ooe_A 492 A 492 (530)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-17 Score=177.86 Aligned_cols=429 Identities=11% Similarity=0.060 Sum_probs=230.8
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 004791 226 VSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCR 305 (730)
Q Consensus 226 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 305 (730)
|++.++.. +-|...|..++. +.+.|++++|+.+|+++.+. .|.+...|..++..+.+.|++++|.++|+++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555543 336777888887 46778888888888888763 45567778888888888888888888888887764
Q ss_pred CChhhHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 004791 306 PTVRTYTVVIFGL-CRVGRKSEALE----FFNEMSAR-GCEP-NVHTYTVLIDCLCK---------ENKVDEASELLNRM 369 (730)
Q Consensus 306 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 369 (730)
|+...|...+... ...|+.++|.+ +|+..+.. |..| +...|...+....+ .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5766777666433 34566666554 56555432 4333 34566666665543 56667777777776
Q ss_pred HHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 004791 370 LEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLI 449 (730)
Q Consensus 370 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 449 (730)
++.........|..........|. .+...++. ...+++.+|..++.+....
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~------- 207 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETV------- 207 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHH-------
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHH-------
Confidence 662100001222221111000000 00000000 0111222232222221000
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCC---CCCC--------HHhHHHHHHHHHh----cCCH----HHHHHHHHHHH
Q 004791 450 TYNSLIYGQCREGHLDSAYKVLHLINESG---LVPD--------QFTYSVFIDTLCK----RGRV----EEAQVLFDSLE 510 (730)
Q Consensus 450 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~--------~~~~~~li~~~~~----~g~~----~~A~~~~~~~~ 510 (730)
....+.. +.|+ ...|...+..... .++. +++..+|++++
T Consensus 208 ----------------------~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 208 ----------------------MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL 265 (530)
T ss_dssp ----------------------HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence 0000000 1111 1222222221111 1121 35566666666
Q ss_pred HcCCCcCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 511 KKGIKAGEVIYTALIDGYCK-------EGKID-------DAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLV 576 (730)
Q Consensus 511 ~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 576 (730)
...+. +...|..++..+.+ .|+++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+|
T Consensus 266 ~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 266 LVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 65332 56666666666654 56665 67777777765222445666777777777777777777777
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCC
Q 004791 577 EKMTKMGVKPTV-YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQA-YCSIGKLDEAEDLIVKMNREGI 654 (730)
Q Consensus 577 ~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~ 654 (730)
+++++.. +.+. ..|..++..+.+.|++++|+++|++.++.... +...|...+.. +...|+.++|..+|++..+..
T Consensus 345 ~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~- 421 (530)
T 2ooe_A 345 NRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 421 (530)
T ss_dssp HHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-
T ss_pred HHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-
Confidence 7777642 1222 46666666666777777777777777664221 22233222222 234677777777777766632
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHcCChhhhhhh
Q 004791 655 VPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGC-EPS--HHTYAFLIKHLSNKKVDERKQQ 714 (730)
Q Consensus 655 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~--~~~~~~l~~~l~~~~~~e~~~~ 714 (730)
+.+...|..++..+.+.|+.++|..+|++.+..+. .|+ ...|...+......|+.+.+..
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 22466677777777777777777777777766422 222 3356566666666666555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-18 Score=174.33 Aligned_cols=269 Identities=10% Similarity=0.010 Sum_probs=123.7
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 377 NVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIY 456 (730)
Q Consensus 377 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 456 (730)
+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++++.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44444555555555555555555555554432 2233444444455555555555555555555432 123444445555
Q ss_pred HHHhCC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChh
Q 004791 457 GQCREG-HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKID 535 (730)
Q Consensus 457 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 535 (730)
.+...| ++++|.+.++++.+... .+...+..+...+...|++++|...++++.+..+. +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 555555 55555555555544321 12334444445555555555555555555444322 2333444455555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCHHHH
Q 004791 536 DAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG--------VKPTVYTYTILIEEVLKEGDFDHA 607 (730)
Q Consensus 536 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A 607 (730)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 5555555554433 3334444444444555555555555554444310 011233444444444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 608 HRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 608 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.+.++++.+.... +...+..+..++...|++++|.+.++++.+
T Consensus 256 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 256 LDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 4444444443211 333444444444444444444444444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-18 Score=174.41 Aligned_cols=285 Identities=11% Similarity=-0.038 Sum_probs=130.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 272 NEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLID 351 (730)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 351 (730)
+...+..++..+...|++++|.++|+++.+.+ +.+...+..++..+...|++++|...++++.+..+. +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 34444445555555555555555555554432 223344444445555555555555555555544322 3444555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHH
Q 004791 352 CLCKEN-KVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVH 430 (730)
Q Consensus 352 ~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 430 (730)
.+...| ++++|...|+++.+.... +...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 555555 555555555555443221 34444555555555555555555555544432 222334444444445555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC--------CCCCHHhHHHHHHHHHhcCCHHHH
Q 004791 431 RAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESG--------LVPDQFTYSVFIDTLCKRGRVEEA 502 (730)
Q Consensus 431 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A 502 (730)
+|...++++++.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 5555555544432 2233444444444555555555555544443311 011223444444444444444444
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 503 QVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 563 (730)
...++++.+..+. +...+..+..+|.+.|++++|...+++.++.. +.+...+..+..++
T Consensus 256 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 4444444443322 33444444444444444444444444444432 22333444444333
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-15 Score=164.77 Aligned_cols=280 Identities=15% Similarity=0.126 Sum_probs=128.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004791 285 EAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASE 364 (730)
Q Consensus 285 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 364 (730)
..|++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++..+.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 4445555555554331 2344555555555555555555555332 144445555555555555555555
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 365 LLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNL 444 (730)
Q Consensus 365 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 444 (730)
.|....+.. ++....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|..+
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 555444432 12222223555555555554322221 1 223344444555555555555555555543
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 004791 445 SPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTAL 524 (730)
Q Consensus 445 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 524 (730)
..|..++..+++.|++++|.+.+++.. +..+|..+..+|...|++..|......+. .+...+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHH
Confidence 245555555555555555555554431 33445555555555555555544433211 133344455
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR--ERKVQEALLLVEKMTKMGVKP------TVYTYTILIE 596 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~~~~~------~~~~~~~l~~ 596 (730)
+..|.+.|.+++|+.+++..+..+ +-....|.-+...|++ .++..++.++|..-.. +++ +...|.-++.
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHH
Confidence 555555555555555555554433 2233334333333332 2333444444432221 111 3344555555
Q ss_pred HHHHcCCHHHHH
Q 004791 597 EVLKEGDFDHAH 608 (730)
Q Consensus 597 ~~~~~g~~~~A~ 608 (730)
.|.+.|+++.|.
T Consensus 1364 LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1364 LYDKYEEYDNAI 1375 (1630)
T ss_pred HHHhcccHHHHH
Confidence 555555555554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-18 Score=176.91 Aligned_cols=279 Identities=10% Similarity=-0.049 Sum_probs=152.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004791 379 VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQ 458 (730)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 458 (730)
..+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..++..+
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555555442 2334444555555555555555555555554432 22344455555555
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHH
Q 004791 459 CREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAH 538 (730)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 538 (730)
...|++++|.+.++++.+.... +...+..+.. ... . .. ....+..+...+ ..|++++|+
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-------~~~-------~----~~-~~~~~~~~~~~~-~~~~~~~A~ 201 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEE-------GAG-------G----AG-LGPSKRILGSLL-SDSLFLEVK 201 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------------------CTTHHHH-HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH-------Hhh-------h----hc-ccHHHHHHHHHh-hcccHHHHH
Confidence 5555555555555555443211 1111100000 000 0 00 000111122222 566667777
Q ss_pred HHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 539 SLLERMLSDDCLP--NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 539 ~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
..++++++.. +. +..++..+...+...|++++|+..++++.+.. +.+..++..++..+...|++++|++.|+++++
T Consensus 202 ~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 279 (368)
T 1fch_A 202 ELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279 (368)
T ss_dssp HHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777666654 22 46666677777777777777777777766643 34566777777777777777777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 617 LGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD-----------SVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 617 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
..+ .+...+..++.+|.+.|++++|...++++.+.. +.+ ..+|..++.+|...|+.++|..++++.
T Consensus 280 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 280 LQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred hCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 532 256677777777777777777777777776532 111 567777777777778877777776544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-18 Score=174.06 Aligned_cols=307 Identities=14% Similarity=0.039 Sum_probs=148.0
Q ss_pred HHHhcCCHHHHHH-HHHHHhhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 004791 282 GLCEAKRVDEALD-LFRRMGEDDC---RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKEN 357 (730)
Q Consensus 282 ~~~~~g~~~~A~~-~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 357 (730)
++...|++++|.+ .|++...... ..+...+..+...+.+.|++++|+..|+++.+..+. +..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCc
Confidence 3444555555555 5554433210 112344555555555555666666655555554332 4455555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 004791 358 KVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLN 437 (730)
Q Consensus 358 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 437 (730)
++++|...|+++.+.... +..++..++..|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~--------------- 175 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG--------------- 175 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH---------------
Confidence 555555555555554321 44455555555555555555555555555432 1111111110000
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-
Q 004791 438 ELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKA- 516 (730)
Q Consensus 438 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~- 516 (730)
... . .+. ..+..+. .+...|++++|...++++.+..+..
T Consensus 176 ---------------------------~~~-------~----~~~-~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~ 215 (368)
T 1fch_A 176 ---------------------------AGG-------A----GLG-PSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSI 215 (368)
T ss_dssp -------------------------------------------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred ---------------------------hhh-------h----ccc-HHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcc
Confidence 000 0 000 0001111 1124455555555555555543221
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
+..++..+...|.+.|++++|+..+++++... +.+..++..+...+...|++++|...++++.+.. +.+...+..++.
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 293 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGI 293 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34555555666666666666666666655543 3345566666666666666666666666665543 345556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKP----------DVYTYTAFIQAYCSIGKLDEAEDLIVK 648 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 648 (730)
++.+.|++++|.+.|+++++..... ...+|..+..+|...|++++|..++++
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 6666666666666666665532111 145667777777777777777666554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=173.13 Aligned_cols=353 Identities=15% Similarity=0.122 Sum_probs=112.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 275 SYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLC 354 (730)
Q Consensus 275 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 354 (730)
+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...+. .+++.+.+.++.+|.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 4444444444444444444444321 23334444444444444444444433333331 223344444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHH
Q 004791 355 KENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMS 434 (730)
Q Consensus 355 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 434 (730)
+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+ ..|..++.++.+.|++++|.+
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVe 169 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 169 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHH
Confidence 4444444444442 133344444455555555555555544433 234445555555555555555
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004791 435 LLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI 514 (730)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 514 (730)
.+.++ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|++++|..+++......
T Consensus 170 a~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le- 237 (449)
T 1b89_A 170 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE- 237 (449)
T ss_dssp HHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-
T ss_pred HHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-
Confidence 55444 1344455555555555555555332222 11122223344455555555555555555554443
Q ss_pred CcCHHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---
Q 004791 515 KAGEVIYTALIDGYCKE--GKIDDAHSLLERMLSDDCLP------NSYTYNALIDGLYRERKVQEALLLVEKMTKMG--- 583 (730)
Q Consensus 515 ~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--- 583 (730)
+-....|+.|.-+|++- ++..+.+++|..- .+++| +...|..+...|.+.++++.|... |.++-
T Consensus 238 ~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a 312 (449)
T 1b89_A 238 RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDA 312 (449)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhh
Confidence 22344444444444432 2222233322211 11111 223455555555555555555442 22210
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 584 -----------VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 584 -----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
-..+...|...+..|.. ....++.-+...+.. +.|. +..+..+.+.|.+.-+..+++.+...
T Consensus 313 ~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~--~ld~---~r~v~~~~~~~~l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 313 WKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSP--RLDH---TRAVNYFSKVKQLPLVKPYLRSVQNH 385 (449)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGG--GCCH---HHHHHHHHHTTCTTTTHHHHHHHHTT
T ss_pred hhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHh--ccCc---HHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 01234444444444441 111222222222211 1121 33444556666666666666666643
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 653 GIVPDSVTYTLLICAYAHLGLIYSAF 678 (730)
Q Consensus 653 g~~~~~~~~~~l~~~~~~~g~~~~A~ 678 (730)
+ +..+-.++-..|....+++.-.
T Consensus 386 n---~~~vnealn~l~ieeed~~~lr 408 (449)
T 1b89_A 386 N---NKSVNESLNNLFITEEDYQALR 408 (449)
T ss_dssp C---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred h---HHHHHHHHHHHHHhhhhHHHHH
Confidence 2 4444555556666666664433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-18 Score=175.49 Aligned_cols=266 Identities=8% Similarity=-0.061 Sum_probs=180.9
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 004791 413 ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDT 492 (730)
Q Consensus 413 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 492 (730)
...+..+...+.+.|++++|...|+++++.. +.+..+|..++..+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666666666666666666666666543 2355566666666777777777777776666543 2245666666677
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCc---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 004791 493 LCKRGRVEEAQVLFDSLEKKGIKA---------GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLP--NSYTYNALID 561 (730)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~ 561 (730)
|...|++++|...++++.+..+.. ....+..+...+.+.|++++|+..++++++.. +. +..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHH
Confidence 777777777777777766543210 12233445777888888888888888888765 23 5778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
.+...|++++|+..++++.+.. +.+..+|..++.+|...|++++|++.|+++++..+. +..+|..++.+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888888754 456788888888888888888888888888876432 57788888888888888888
Q ss_pred HHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 642 AEDLIVKMNREGI---V--------PDSVTYTLLICAYAHLGLIYSAFDVLKR 683 (730)
Q Consensus 642 A~~~~~~m~~~g~---~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (730)
|...++++.+..- . .+...|..+..++...|+.+.+.+..++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888888876320 0 0256788888888888888887776654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=167.69 Aligned_cols=281 Identities=14% Similarity=0.095 Sum_probs=98.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 004791 180 KFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFR 259 (730)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 259 (730)
+.|++++|...++++- +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4466777777776662 2236777777777777777777777542 455567777777777777777777
Q ss_pred HHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 260 VFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGC 339 (730)
Q Consensus 260 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 339 (730)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655552 2445666777777777777777666653 255567777777777777777777777654
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHH
Q 004791 340 EPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNEL 419 (730)
Q Consensus 340 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 419 (730)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 35677777777777777777777766 166677777777777777777744433322 222234456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCCC------CHHhHHHHHH
Q 004791 420 ICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREG--HLDSAYKVLHLINESGLVP------DQFTYSVFID 491 (730)
Q Consensus 420 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~------~~~~~~~li~ 491 (730)
+..|.+.|.+++|+.+++..+... +-....|+-|...|++-. +..+.++.|.. +.+++| +...|..++-
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 666777777777777777666543 334455555555555432 23333333321 011111 2345566666
Q ss_pred HHHhcCCHHHHHH
Q 004791 492 TLCKRGRVEEAQV 504 (730)
Q Consensus 492 ~~~~~g~~~~A~~ 504 (730)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 6666666666654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=171.44 Aligned_cols=277 Identities=10% Similarity=-0.058 Sum_probs=137.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 307 TVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALID 386 (730)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 386 (730)
+...|..++..+.+.|++++|++.|+++.+..+. +..++..+...+...|++++|+..|+++++... .+..+|..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 3445666666666666777777766666665433 566666666666666777777777666666532 24566666666
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH
Q 004791 387 GYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS 466 (730)
Q Consensus 387 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 466 (730)
.|...|++++|.+.|+++.+.. +.+...+..+. .....+..+...+...|++++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 6666666666666666665532 11111111110 011112223333444444444
Q ss_pred HHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004791 467 AYKVLHLINESGLV-PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERML 545 (730)
Q Consensus 467 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 545 (730)
|.+.++++.+.... .+..++..+...+...|++++|...++++.+..+. +..+|..+..+|.+.|++++|+..+++++
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444433211 13444444444444555555555555554444322 34455555555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004791 546 SDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGV-----------KPTVYTYTILIEEVLKEGDFDHAHRLLDQ 613 (730)
Q Consensus 546 ~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (730)
+.. +.+..++..+...|.+.|++++|...|+++.+... ..+..+|..+..++...|+.+.+..+.++
T Consensus 275 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 275 EIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 443 23345555555555555555555555555543210 00245566666666666666666655543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-16 Score=166.89 Aligned_cols=298 Identities=12% Similarity=0.014 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHH
Q 004791 288 RVDEALDLFRRMGEDDCRPTVRTYTVVIFG---LCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCK----ENKVD 360 (730)
Q Consensus 288 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~ 360 (730)
++++|++.|++..+.+ +.+...+..+... +...++.++|++.+++.++.++. +..++..+...+.. .|+++
T Consensus 153 ~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 153 QNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------C
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHH
Confidence 4556666665555443 2233333333333 22345555566666555554332 34444444433332 34455
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 361 EASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELL 440 (730)
Q Consensus 361 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 440 (730)
+|.+.+++....... +..++..+...|.+.|++++|.+.+++..+.. +.+..++..+...|...+... .
T Consensus 231 ~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~---------~ 299 (472)
T 4g1t_A 231 EGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV---------M 299 (472)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH---------H
T ss_pred HHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh---------h
Confidence 666666665554322 44555556666666666666666666655542 223444444444332211000 0
Q ss_pred HCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--
Q 004791 441 EQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGE-- 518 (730)
Q Consensus 441 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-- 518 (730)
... ...........+..+.|...++...+... .+...+..+...+...|++++|...|+++.+..+.+..
T Consensus 300 ~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 300 NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 000 00000001111224455555555554321 23344555566666666666666666666655433221
Q ss_pred HHHHHHHH-HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 519 VIYTALID-GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 519 ~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
..+..+.. .+...|+.++|+..+++.++.. |+..... +....+.+++++.++.. +.+..+|..++..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFL 439 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 11222222 2345667777777777776653 3322211 12233444555555543 4566777777778
Q ss_pred HHHcCCHHHHHHHHHHHHHCC
Q 004791 598 VLKEGDFDHAHRLLDQMVSLG 618 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~ 618 (730)
|...|++++|++.|+++++.+
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHCC-------------
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 888888888888888777754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-15 Score=163.49 Aligned_cols=385 Identities=14% Similarity=0.008 Sum_probs=245.3
Q ss_pred cCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----
Q 004791 166 LSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDN-----M--VVP-NIYTFNTMINGCCKVGNVGEAELYVSKIVQAG---- 233 (730)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g---- 233 (730)
..+..||.+...+...|++++|+..|+++++. + ..| ...+|+.+..+|...|++++|...++++.+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 44678999999999999999999999998753 1 123 45689999999999999999999999886531
Q ss_pred --CC-CCHHhHHHHHHHHHh--cCChhHHHHHHHhchhCCCCcChhhHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCC
Q 004791 234 --LS-PDTFTYTSLILGYCR--NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHG---LCEAKRVDEALDLFRRMGEDDCR 305 (730)
Q Consensus 234 --~~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~ 305 (730)
.. ....++..+..++.+ .+++++|+..|++..+.. |.+...+..+..+ +...++.++|++.|++..+.+ +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 11 124556655555554 457999999999998754 3455666666555 345688899999999988765 4
Q ss_pred CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 004791 306 PTVRTYTVVIFGLCR----VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTY 381 (730)
Q Consensus 306 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 381 (730)
.+..++..+...+.. .|++++|.+.+++.....+. +..++..+...|...|++++|...+++..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 456667666655554 46788999999999887544 7788999999999999999999999999987433 56677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC
Q 004791 382 NALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCRE 461 (730)
Q Consensus 382 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 461 (730)
..+...|...+.... ... ...........+..++|...+++..+.. +.+..++..+...+...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 777766643211110 000 0000001111233566777777776643 23455677777777788
Q ss_pred CChhHHHHHHHHHHhCCCCCCHH--hHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHH
Q 004791 462 GHLDSAYKVLHLINESGLVPDQF--TYSVFID-TLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAH 538 (730)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 538 (730)
|++++|.+.|++..+....+... .+..+.. .....|+.++|+..|++.++..+. ..... +....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHH---------HHHHHHH
Confidence 88888888887777654332211 1222222 234567788888888887776432 22111 1223444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004791 539 SLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG 583 (730)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 583 (730)
.++++.+..+ +.+..+|..+...|...|++++|++.|++.++.+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5555555544 5566778888888888888888888888887754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=161.66 Aligned_cols=279 Identities=9% Similarity=-0.021 Sum_probs=171.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004791 379 VTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQ 458 (730)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 458 (730)
..+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 334445555555555555555555554432 2234444455555555555555555555554432 12334444444444
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH-HH-HHHhcCChhH
Q 004791 459 CREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTAL-ID-GYCKEGKIDD 536 (730)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~ 536 (730)
...|++++|.+.++++.+.... +...+..+... .++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 4444444444444444433211 11111111000 0000001111 22 3667788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 537 AHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 537 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|.+.++++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888887765 4567788888888888888888888888888754 45677888888888889999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 617 LGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-----------DSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 617 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
... .+...+..++.++...|++++|.+.++++.+..... +...|..++.++...|++++|..++++.+
T Consensus 235 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 INP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 643 367788888888889999999999998888743111 36778888888999999999988877543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=160.73 Aligned_cols=281 Identities=12% Similarity=0.019 Sum_probs=218.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 004791 342 NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELIC 421 (730)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 421 (730)
+...+..+...+...|++++|..+|+++.+.... +..++..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 4567788899999999999999999999987543 77889999999999999999999999998864 557788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHH--HHHhcCCH
Q 004791 422 GFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFID--TLCKRGRV 499 (730)
Q Consensus 422 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~ 499 (730)
.+...|++++|...++++.+.... +...+..+... .|+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 999999999999999999986422 22333222111 011111112212 25667788
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 500 EEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKM 579 (730)
Q Consensus 500 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 579 (730)
++|...++++.+..+. +..++..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888877544 67788888888889999999999998888765 456788888888999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 580 TKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP-----------DVYTYTAFIQAYCSIGKLDEAEDLIVK 648 (730)
Q Consensus 580 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 648 (730)
.+.. +.+..++..+...+...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8754 4567888889999999999999999999988753321 467888899999999999999988875
Q ss_pred HH
Q 004791 649 MN 650 (730)
Q Consensus 649 m~ 650 (730)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 44
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.4e-18 Score=181.79 Aligned_cols=116 Identities=10% Similarity=0.113 Sum_probs=71.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHhch---hCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 004791 238 TFTYTSLILGYCRNKDVEKGFRVFMMMP---KKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVV 314 (730)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 314 (730)
..+||+||++||+.|++++|.++|++|. ..|+.||+++||+||++||+.|++++|.++|++|.+.|+.||++||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4566666666666666666666665543 2355566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004791 315 IFGLCRVGR-KSEALEFFNEMSARGCEPNVHTYTVLIDCL 353 (730)
Q Consensus 315 i~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 353 (730)
|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 666666665 355666666666666666666666655443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-16 Score=151.69 Aligned_cols=192 Identities=12% Similarity=0.080 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 004791 450 TYNSLIYGQCREGHLDSAYKVLHLINESGLVP-DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGY 528 (730)
Q Consensus 450 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 528 (730)
++..+...+...|+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence 33333444444444444444444443332212 222333333444444444444444433 12334444444444
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004791 529 CKEGKIDDAHSLLERMLSDDCLPNSYTY---NALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFD 605 (730)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 605 (730)
.+.|++++|...++++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|+++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Confidence 44455555555444444432 221100 111122223355555555555555442 344555555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE-AEDLIVKMNR 651 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 651 (730)
+|.+.|+++++..+. +..++..++..+...|+.++ +.++++++.+
T Consensus 218 eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 218 AAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555555554322 44455555555555555543 3455555554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-15 Score=150.23 Aligned_cols=146 Identities=12% Similarity=0.122 Sum_probs=61.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 284 CEAKRVDEALDLFRRMGEDDCRPT--VRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDE 361 (730)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 361 (730)
...|+++.|++.+++....+ |+ ......+.++|...|++++|+..++. ...|+..++..++..+...|+.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 33455555555544433321 22 12333344455555555555443322 112234444444444444444555
Q ss_pred HHHHHHHHHHCCCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 362 ASELLNRMLEKGLFP-NVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNELL 440 (730)
Q Consensus 362 A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 440 (730)
|.+.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..++..+.+.|+.++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555554444433222 233333344444444444444444443 2233334444444444444444444444443
Q ss_pred H
Q 004791 441 E 441 (730)
Q Consensus 441 ~ 441 (730)
+
T Consensus 158 ~ 158 (291)
T 3mkr_A 158 D 158 (291)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-15 Score=160.17 Aligned_cols=346 Identities=12% Similarity=0.051 Sum_probs=171.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHhchhCCCCcChhhHHHHHHHHHh
Q 004791 209 MINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDV---EKGFRVFMMMPKKGCRRNEVSYTNLIHGLCE 285 (730)
Q Consensus 209 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 285 (730)
+...+.+.|++++|..+|.+..+.| +...+..|...|...|+. ++|...|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445556667777777777666654 233344455555556666 6777777666652 45555666664544
Q ss_pred cC-----CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 004791 286 AK-----RVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSE---ALEFFNEMSARGCEPNVHTYTVLIDCLCKEN 357 (730)
Q Consensus 286 ~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 357 (730)
.| ++++|++.|++..+.| +...+..+...|...+..++ +.+.+......| +...+..|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44 5667777777777655 23356666666665554333 333333333333 3455666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhc----CCHH
Q 004791 358 KVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEG---LMEAALQILDLMKSNNCSPNARTYNELICGFCKR----KNVH 430 (730)
Q Consensus 358 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~~ 430 (730)
.++++......+.+.-...+...+..|...|.+.| +.++|++.|++..+.| +++...+..|...|... ++.+
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 54444433222222211224446666777777777 7777777777777665 44444445555555443 5677
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHH-H--HhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-----CHHHH
Q 004791 431 RAMSLLNELLEQNLSPTLITYNSLIYG-Q--CREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRG-----RVEEA 502 (730)
Q Consensus 431 ~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A 502 (730)
+|+..|++.. . .+...+..|... + ...+++++|.+.|++..+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777777665 2 344555555554 2 34566666666666666554 4444555554444 33 56666
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 004791 503 QVLFDSLEKKGIKAGEVIYTALIDGYCK----EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR----ERKVQEALL 574 (730)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~ 574 (730)
...|++.. .| +...+..|...|.. ..++++|..+|++..+.| +......|...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 66665555 22 44455555554444 225555555555555544 12233333333332 234555555
Q ss_pred HHHHHHhCC
Q 004791 575 LVEKMTKMG 583 (730)
Q Consensus 575 ~~~~m~~~~ 583 (730)
.|+...+.|
T Consensus 380 ~~~~A~~~g 388 (452)
T 3e4b_A 380 FSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHCC
Confidence 555555444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-17 Score=176.79 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004791 551 PNSYTYNALIDGLYRERKVQEALLLVEKMTK---MGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYT 627 (730)
Q Consensus 551 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 627 (730)
.-..||++||++|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456888888888888888888888877654 4678888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004791 628 AFIQAYCSIGK-LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPS 692 (730)
Q Consensus 628 ~l~~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 692 (730)
++|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ ..++.|+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 88888888887 467888888888888888888888887666553 344444444 3455554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-15 Score=158.21 Aligned_cols=372 Identities=13% Similarity=0.016 Sum_probs=172.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 004791 280 IHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRK---SEALEFFNEMSARGCEPNVHTYTVLIDCLCKE 356 (730)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 356 (730)
...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|++.|++..+. +...+..|...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 334444455555555555544433 222333333344444444 4555555544432 333344444433333
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHH---HHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCC
Q 004791 357 N-----KVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLME---AALQILDLMKSNNCSPNARTYNELICGFCKRKN 428 (730)
Q Consensus 357 g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 428 (730)
| +.++|...|++..+.| +...+..|...|...+..+ ++.+.+......| +...+..|...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 3 4445555555555543 2224444444444433222 2333333333322 33444444555544443
Q ss_pred H----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----C
Q 004791 429 V----HRAMSLLNELLEQNLSPTLITYNSLIYGQCREG---HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKR----G 497 (730)
Q Consensus 429 ~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 497 (730)
+ +++..+++.... .+...+..|...|...| +.++|++.|++..+.|. ++...+..+...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCC
Confidence 2 222333332222 12235555666666666 66666666666666552 2333334444444333 4
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CH
Q 004791 498 RVEEAQVLFDSLEKKGIKAGEVIYTALIDG-Y--CKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRER-----KV 569 (730)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-----~~ 569 (730)
++++|...|++.. .| +...+..|... | ...+++++|+.+|++..+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 6666777766666 32 44555555555 3 34667777777777766654 5555666666555 33 67
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 004791 570 QEALLLVEKMTKMGVKPTVYTYTILIEEVLK----EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS----IGKLDE 641 (730)
Q Consensus 570 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 641 (730)
++|++.|++.. . .+...+..+...|.. ..++++|.+.|++..+.|. ......|..+|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 77777776665 2 345556666655554 3367777777777766552 2234455555543 346777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 642 AEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
|..++++..+.| .++.......+......++.++|..+.++..
T Consensus 377 A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 377 AYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 777777777665 2222222222222222334555555555543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-14 Score=140.32 Aligned_cols=225 Identities=14% Similarity=0.089 Sum_probs=169.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--C----HHHHH
Q 004791 449 ITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKA--G----EVIYT 522 (730)
Q Consensus 449 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~ 522 (730)
..+..+...+...|++++|...++++.+.. .+...+..+...+...|++++|...++++.+..+.. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345566666666777777777777666655 456666667777777777777777777766543221 1 46777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG 602 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 602 (730)
.+...|...|++++|+..++++.... |+. ..+...|++++|...++++.... +.+...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 78888888888888888888887754 442 34556677888888888888754 445677888888889999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 603 DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLK 682 (730)
Q Consensus 603 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 682 (730)
++++|.+.++++++.... +...|..++.++...|++++|.+.++++.+.. +.+...|..++.++...|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999998886533 67888889999999999999999999988854 3458888889999999999999999999
Q ss_pred HHHHc
Q 004791 683 RMFDA 687 (730)
Q Consensus 683 ~m~~~ 687 (730)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-15 Score=137.75 Aligned_cols=198 Identities=17% Similarity=0.053 Sum_probs=129.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 561 (730)
+...+..+...+.+.|++++|...|+++++..+. +...+..+..++.+.|++++|+..+++.++.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3445555556666666666666666666665443 55666666666666666666666666666654 445556666666
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 562 GLYRE-----------RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFI 630 (730)
Q Consensus 562 ~~~~~-----------~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 630 (730)
.+... |++++|+..+++.++.. +.+...+..+...+...|++++|++.|+++++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 66666 88888888888887754 4467777788888888888888888888888766 4777788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
.+|...|++++|+..++++.+.. +.+...+..++.++...|++++|+..+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888888743 2357777888888888888888888877653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-14 Score=137.96 Aligned_cols=222 Identities=13% Similarity=0.059 Sum_probs=139.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--CC----HHhHHHH
Q 004791 416 YNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLV--PD----QFTYSVF 489 (730)
Q Consensus 416 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 489 (730)
+..+...+...|++++|...++++++.. .+...+..+...+...|++++|.+.++++.+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444444555555555555544443 34444555555555555555555555544432111 11 3455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKV 569 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 569 (730)
...+...|++++|...++++.+... + ...+.+.|++++|...++++.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 6666666666666666666665432 2 133555666777777777777654 33455677777777777888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 570 QEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKM 649 (730)
Q Consensus 570 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 649 (730)
++|...++++.+.. +.+..++..++..+...|++++|.+.++++++.... +...|..+..++...|++++|.+.++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888887777654 456777777888888888888888888888775432 5677778888888888888888888887
Q ss_pred HH
Q 004791 650 NR 651 (730)
Q Consensus 650 ~~ 651 (730)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-14 Score=133.74 Aligned_cols=199 Identities=17% Similarity=0.020 Sum_probs=135.4
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 004791 446 PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALI 525 (730)
Q Consensus 446 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 525 (730)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++.+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 345556666666666666777776666666543 224556666666667777777777777777666543 556666677
Q ss_pred HHHHhc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004791 526 DGYCKE-----------GKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTIL 594 (730)
Q Consensus 526 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 594 (730)
.++.+. |++++|+..+++.++.. |.+...+..+...+...|++++|+..|+++++.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 88888888888888765 4567778888888888888888888888888766 677888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 595 IEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
..++...|++++|+..|+++++..+. +...+..+..++...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888888876433 67778888888888888888888887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.1e-12 Score=136.52 Aligned_cols=457 Identities=8% Similarity=0.021 Sum_probs=268.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC---hhHH
Q 004791 181 FHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKD---VEKG 257 (730)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A 257 (730)
.....+-+..|++.+...+ -|..+|..++..+.+.+.++.+..+|++++.. ++.....|...+..-.+.|+ ++.+
T Consensus 45 ~~~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 45 VRDESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp -CCCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 3445666667777776643 47888888888888888888888899888876 45567778888888888888 8888
Q ss_pred HHHHHhchhCC-CCcChhhHHHHHHHHHhcCCH--------HHHHHHHHHHhh-CCC-CC-ChhhHHHHHHHHHh-----
Q 004791 258 FRVFMMMPKKG-CRRNEVSYTNLIHGLCEAKRV--------DEALDLFRRMGE-DDC-RP-TVRTYTVVIFGLCR----- 320 (730)
Q Consensus 258 ~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~~----- 320 (730)
.++|++..... .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+.....
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 88888887743 137777888877766665543 234466666554 244 33 34577777665432
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHH
Q 004791 321 ----VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEA 396 (730)
Q Consensus 321 ----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 396 (730)
.++++.+..+|+.++......-..+|......--..+. ..+..++.+. ..+++.
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~ 260 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHH
Confidence 23456677777777643111111222222111111111 1111111111 112333
Q ss_pred HHHHHHHHHh--CCC----CCC-------------------hhcHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCC
Q 004791 397 ALQILDLMKS--NNC----SPN-------------------ARTYNELICGFCKRK-------NVHRAMSLLNELLEQNL 444 (730)
Q Consensus 397 A~~~~~~m~~--~~~----~~~-------------------~~~~~~li~~~~~~~-------~~~~A~~~~~~~~~~~~ 444 (730)
|...+.++.. .++ +.. ...|...+..--..+ ..+.+..+|++++.. +
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~ 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence 4444433221 011 000 022333333222221 123455667777664 3
Q ss_pred CCChhhHHHHHHHHHhCCChhHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------
Q 004791 445 SPTLITYNSLIYGQCREGHLDSAY-KVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI--------- 514 (730)
Q Consensus 445 ~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------- 514 (730)
+-....|...+..+...|+.++|. +++++.... .+.+...|..++....+.|++++|..+|+.+.+...
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 446677777777777778777786 888877764 334556666777777778888888888887765310
Q ss_pred Cc------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 004791 515 KA------------GEVIYTALIDGYCKEGKIDDAHSLLERMLSD-DCLPNSYTYNALIDGLYRE-RKVQEALLLVEKMT 580 (730)
Q Consensus 515 ~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-~~~~~A~~~~~~m~ 580 (730)
.| ...+|...+....+.|..+.|..+|.++++. . ......|...+..-.+. ++.+.|.++|+..+
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 02 1235777777777777788888888887765 2 11223333333333333 34778888888777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004791 581 KMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDS 658 (730)
Q Consensus 581 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 658 (730)
+. .+.+...+...+......|+.+.|+.+|++.+.....+ ....|...+..-.+.|+.+.+.++.+++.+. .|+.
T Consensus 498 k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 498 KY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 64 34456666677777777788888888888877654321 2446777777777778888888888888774 3443
Q ss_pred HHHHHHHHH
Q 004791 659 VTYTLLICA 667 (730)
Q Consensus 659 ~~~~~l~~~ 667 (730)
.....+++-
T Consensus 575 ~~~~~f~~r 583 (679)
T 4e6h_A 575 NKLEEFTNK 583 (679)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 333333333
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-13 Score=130.85 Aligned_cols=209 Identities=14% Similarity=0.040 Sum_probs=147.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 484 FTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGL 563 (730)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 563 (730)
..+..+...+...|++++|...++++.+..+. +...+..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 44555556666667777777777766665433 55667777777777777777777777776654 34566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 564 YRERKVQEALLLVEKMTKMGVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 564 ~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 642 (730)
...|++++|.++++++.+.+..| +...+..++..+...|++++|.+.++++.+.... +...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 77788888888887777622233 4566777777888888888888888887775432 567778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004791 643 EDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAF 698 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 698 (730)
...++++.+.. +.+...+..++..+...|+.++|.++++++.+. .|+...+..
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 88888887743 345677777888888888888888888888764 455444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-13 Score=140.41 Aligned_cols=248 Identities=10% Similarity=0.063 Sum_probs=200.3
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004791 448 LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGR-VEEAQVLFDSLEKKGIKAGEVIYTALID 526 (730)
Q Consensus 448 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 526 (730)
...|..+...+.+.|++++|++.++++++... -+...|..+..++...|+ +++|+..|+++++..+. +..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 34677777888888999999999998887643 357788888888888996 99999999999988765 7888999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHH
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK-EGDFD 605 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~ 605 (730)
++...|++++|+..|+++++.+ +.+...|..+..++.+.|++++|+..++++++.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999876 6678889999999999999999999999999876 5678889999999988 56657
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 004791 606 HA-----HRLLDQMVSLGLKPDVYTYTAFIQAYCSIG--KLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG------ 672 (730)
Q Consensus 606 ~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g------ 672 (730)
+| ++.++++++..+. +...|..+..++...| ++++|++.++++ +.. +.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5889998886543 6778999999998888 689999999888 432 346788889999998874
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCCHHH-HHHHHHHHH
Q 004791 673 ---LIYSAFDVLKRM-FDAGCEPSHHT-YAFLIKHLS 704 (730)
Q Consensus 673 ---~~~~A~~~~~~m-~~~g~~p~~~~-~~~l~~~l~ 704 (730)
..++|+++++++ .+ +.|...- |..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 358999999998 55 4676544 444544444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-12 Score=126.75 Aligned_cols=224 Identities=13% Similarity=-0.030 Sum_probs=164.1
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCK----RGRVEEAQVLFDSLEKKGIKAGEVIYT 522 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 522 (730)
+..++..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44555666666666677777777777666632 44556666666666 777777777777777664 566677
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004791 523 ALIDGYCK----EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR----ERKVQEALLLVEKMTKMGVKPTVYTYTIL 594 (730)
Q Consensus 523 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 594 (730)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 778888888887777764 56677777777777 788888888888887754 55667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 595 IEEVLK----EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS----IGKLDEAEDLIVKMNREGIVPDSVTYTLLIC 666 (730)
Q Consensus 595 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 666 (730)
...|.. .+++++|.+.|++..+.+ +...+..+..+|.. .+++++|.+.+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888887753 45677778888888 888888888888888754 3667777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 004791 667 AYAH----LGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 667 ~~~~----~g~~~~A~~~~~~m~~~g 688 (730)
.|.. .|++++|.++|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8887 888888888888887764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-13 Score=132.61 Aligned_cols=229 Identities=11% Similarity=0.070 Sum_probs=99.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhc
Q 004791 419 LICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVP--DQFTYSVFIDTLCKR 496 (730)
Q Consensus 419 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 496 (730)
....+...|++++|+..++++++.. +.+...+..+...+...|++++|++.++++.+.+..+ ....+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3334444444444444444444432 1122234444444444444444444444444421111 112244444444555
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 497 GRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLV 576 (730)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 576 (730)
|++++|...++++.+..+. +..++..+...|...|++++|+..+++.++.. +.+...+..+...+...+++++|.+.|
T Consensus 88 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444322 33445555555555555555555555554442 333444444442222233555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 577 EKMTKMGVKPTVYTYTILIEEVLKEGD---FDHAHRLLDQMVSLG-LKPD------VYTYTAFIQAYCSIGKLDEAEDLI 646 (730)
Q Consensus 577 ~~m~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~~~~ 646 (730)
+++++.. +.+...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...|++++|.+.+
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555432 2234444444444444444 444444444444321 0011 123444444445555555555555
Q ss_pred HHHHH
Q 004791 647 VKMNR 651 (730)
Q Consensus 647 ~~m~~ 651 (730)
+++.+
T Consensus 245 ~~al~ 249 (272)
T 3u4t_A 245 KNILA 249 (272)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-13 Score=134.01 Aligned_cols=244 Identities=11% Similarity=-0.000 Sum_probs=199.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHHHHHHH
Q 004791 448 LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG--EVIYTALI 525 (730)
Q Consensus 448 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li 525 (730)
...+......+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+....++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34556678889999999999999999988643 2455888888999999999999999999998432222 33588999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004791 526 DGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFD 605 (730)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 605 (730)
..+...|++++|+..+++..+.. +.+..++..+...+...|++++|+..+++.++.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 5567899999999999999999999999998874 557788888884555567999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHH
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK---LDEAEDLIVKMNREG-IVPD------SVTYTLLICAYAHLGLIY 675 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g-~~~~------~~~~~~l~~~~~~~g~~~ 675 (730)
+|.+.|+++++..+. +...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..++..|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999986433 57788889999998888 888999999988631 1133 267888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH
Q 004791 676 SAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 676 ~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
+|.+.++++++. .|+.....
T Consensus 239 ~A~~~~~~al~~--~p~~~~a~ 258 (272)
T 3u4t_A 239 KADAAWKNILAL--DPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHhc--CccHHHHH
Confidence 999999999985 56655444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-13 Score=126.82 Aligned_cols=211 Identities=13% Similarity=0.033 Sum_probs=149.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...+..+...+...|++++|...++++.+..+. +...+..+...|...|++++|...++++.... +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445556666667777777777777777665433 45667777777777777777777777777654 4466677777777
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 563 LYRE-RKVQEALLLVEKMTKMGVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 563 ~~~~-~~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
+... |++++|...++++.+.+..| +...+..++..+...|++++|++.++++.+.... +...+..++.++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 7777 88888888888777622223 3566777778888888888888888888775432 5677788888888888888
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004791 641 EAEDLIVKMNREGIV-PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFL 699 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 699 (730)
+|.+.++++.+.. + .+...+..+...+...|+.++|..+++.+.+. .|+......+
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~ 221 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 8888888887743 2 45667777777778888888888888887654 4555554443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-11 Score=132.90 Aligned_cols=441 Identities=12% Similarity=0.043 Sum_probs=296.3
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCC-CCCHHh
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGN---VGEAELYVSKIVQAGL-SPDTFT 240 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~g~-~~~~~~ 240 (730)
+.|...|..++..+.+.+.++.+..+|++++.. ++.....|...+..-.+.|+ ++.+..+|++.+.... .|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 578999999999999999999999999999986 44567789999999999999 9999999999998641 378889
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHhchh-CCC-Cc-ChhhHHHHHHHHH---------hcCCHHHHHHHHHHHh
Q 004791 241 YTSLILGYCRNKDV--------EKGFRVFMMMPK-KGC-RR-NEVSYTNLIHGLC---------EAKRVDEALDLFRRMG 300 (730)
Q Consensus 241 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~ 300 (730)
|...+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|+++.
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888877766654 334578887654 354 34 4568888887654 3456788999999998
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---
Q 004791 301 EDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEK--GLF--- 375 (730)
Q Consensus 301 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~--- 375 (730)
......-..+|......-...+. ..+.+++.+ ...+++.|...+.++... ++.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred hCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 63211112333322221111111 001111111 112333444444443211 110
Q ss_pred CC--------------------hhhHHHHHHHHHhCC-------CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCC
Q 004791 376 PN--------------------VVTYNALIDGYCKEG-------LMEAALQILDLMKSNNCSPNARTYNELICGFCKRKN 428 (730)
Q Consensus 376 ~~--------------------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 428 (730)
|. ...|...+..--..+ ..+.+..+|++..... +-+...|...+..+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Confidence 00 123444444333322 1234556777776642 4567788888888888888
Q ss_pred HHHHH-HHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC---------CCC------------HHhH
Q 004791 429 VHRAM-SLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGL---------VPD------------QFTY 486 (730)
Q Consensus 429 ~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~~------------~~~~ 486 (730)
.++|. ++|++.+.. ++.+...|...+....+.|++++|.++|+.+.+... .|+ ...|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88886 999988864 445666677788888889999999999988775310 131 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004791 487 SVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKE-GKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR 565 (730)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 565 (730)
...+....+.|..+.|+.+|..+.+........+|...+..-.+. ++.+.|..+|+..++. .+.+...|...+.....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 777888888899999999999998761122334454444444444 4589999999999886 35577778888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 566 ERKVQEALLLVEKMTKMGVK--PTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 633 (730)
.|+.+.|..+|++.+..... .....|...+..-.+.|+.+.+.++.+++.+.-+. ......+++-|
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~--~~~~~~f~~ry 584 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE--VNKLEEFTNKY 584 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT--CCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CcHHHHHHHHh
Confidence 99999999999999986522 14567888888888999999999999999986433 23334444444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-12 Score=126.86 Aligned_cols=224 Identities=10% Similarity=-0.048 Sum_probs=151.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004791 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCK----VGNVGEAELYVSKIVQAGLSPDTFTYT 242 (730)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~ 242 (730)
++.++..+...|.+.|++++|+..|+++.+. .+..++..+...|.. .+++++|..+|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556667777777777888888888777773 245566777777777 777777777777777764 566677
Q ss_pred HHHHHHHh----cCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 004791 243 SLILGYCR----NKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCE----AKRVDEALDLFRRMGEDDCRPTVRTYTVV 314 (730)
Q Consensus 243 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 314 (730)
.+...|.. .+++++|+..|++..+.+ +..++..+...|.. .|++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777776643 56667777777776 777777777777776654 45556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 315 IFGLCR----VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCK----ENKVDEASELLNRMLEKGLFPNVVTYNALID 386 (730)
Q Consensus 315 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 386 (730)
...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 667777777777666653 44556666666666 666777777766666653 2455555666
Q ss_pred HHHh----CCCHHHHHHHHHHHHhCC
Q 004791 387 GYCK----EGLMEAALQILDLMKSNN 408 (730)
Q Consensus 387 ~~~~----~g~~~~A~~~~~~m~~~~ 408 (730)
.|.+ .+++++|.+.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 666666666666665543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-13 Score=136.43 Aligned_cols=214 Identities=11% Similarity=0.051 Sum_probs=97.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004791 381 YNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKN-VHRAMSLLNELLEQNLSPTLITYNSLIYGQC 459 (730)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 459 (730)
|..+...+.+.|++++|++.++++.+.+ +.+...|+.+...+...|+ +++|+..++++++.. +.+...|+.+...+.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2233444444444444443 444444444444432 113444444444455
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCChhHH-
Q 004791 460 REGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCK-EGKIDDA- 537 (730)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A- 537 (730)
..|++++|+..|+++++... -+...|..+..++...|++++|+..++++++.++. +...|+.+..++.+ .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHH
Confidence 55555555555555444321 13444444444555555555555555555554433 44455555555555 3333444
Q ss_pred ----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004791 538 ----HSLLERMLSDDCLPNSYTYNALIDGLYRER--KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE 601 (730)
Q Consensus 538 ----~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 601 (730)
+..+++.+... +.+...|+.+...+...| ++++|++.+.++ +.. +.+...+..++.+|.+.
T Consensus 256 ~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHH
Confidence 24444444433 333444554444444444 345555555444 221 33444444455554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=132.37 Aligned_cols=200 Identities=17% Similarity=0.126 Sum_probs=130.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|+..++++.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555555666667777777777776665433 56666677777777777777777777776654 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 642 (730)
+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.+... .+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777777654 44666777777777788888888888877776542 2566777777788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 643 EDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
.+.++++.+.. +.+..++..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888877643 335777777888888888888888888888764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-12 Score=126.15 Aligned_cols=202 Identities=13% Similarity=0.046 Sum_probs=168.6
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 004791 448 LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDG 527 (730)
Q Consensus 448 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 527 (730)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4567777888888899999999998887754 336778888888899999999999999998887544 67788889999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLP-NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDH 606 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 606 (730)
|...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988732233 56778888889999999999999999988765 4568888999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 607 AHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 607 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
|.+.++++.+... .+...+..+...+...|++++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999988643 367788888999999999999999999998853
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=135.86 Aligned_cols=246 Identities=13% Similarity=-0.009 Sum_probs=137.2
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 004791 426 RKNVHRAMSLLNELLEQNL---SPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEA 502 (730)
Q Consensus 426 ~~~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 502 (730)
.|++++|+..++++++... +.+..++..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4556666666666665421 1134455566666666666666666666666543 22455666666666666666666
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 503 QVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
...++++.+..+. +..++..+..+|.+.|++++|...++++.+.. |+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 6666666665433 45566666666666777777777776666643 33333333333444556667777766665553
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 583 GVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP---DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 583 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 659 (730)
. +++...+. ++..+...++.++|.+.++++.+..... +...+..++.+|...|++++|...++++.+. .|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 2 23333332 4555556666666666666665432110 1355666666777777777777777777663 2421
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 004791 660 TYTLLICAYAHLGLIYSAFDVL 681 (730)
Q Consensus 660 ~~~~l~~~~~~~g~~~~A~~~~ 681 (730)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222244555666666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=135.96 Aligned_cols=197 Identities=13% Similarity=-0.065 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004791 274 VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCL 353 (730)
Q Consensus 274 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 353 (730)
.+|..+...+...|++++|.+.|+++.+.+ +.+..+|..++..+...|++++|++.|+++.+..+. +..++..+...+
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHH
Confidence 344444444444444444444444444432 223444444444444445555555554444443222 344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHH
Q 004791 354 CKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAM 433 (730)
Q Consensus 354 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 433 (730)
...|++++|...++++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|.
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLM 197 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHH
Confidence 45555555555554444431 222222222233333444455555444443321 1222222 2333344444444444
Q ss_pred HHHHHHHHCCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 004791 434 SLLNELLEQNLS---PTLITYNSLIYGQCREGHLDSAYKVLHLINE 476 (730)
Q Consensus 434 ~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 476 (730)
..+.++.+.... .+...+..+...+...|++++|...++++.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444332100 0123334444444444444444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-13 Score=130.08 Aligned_cols=212 Identities=13% Similarity=0.107 Sum_probs=140.6
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 526 (730)
....|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 33455566666677777777777777766643 235666667777777777777777777777766443 5667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 004791 527 GYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDH 606 (730)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 606 (730)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888877754 4566777778888888888888888888877654 4567778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004791 607 AHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLL 664 (730)
Q Consensus 607 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 664 (730)
|.+.++++.+... .+..++..++.+|...|++++|.+.++++.+.. +.+...+..+
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 8888888877643 357778888888888888888888888888743 2244444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-12 Score=121.70 Aligned_cols=203 Identities=10% Similarity=-0.008 Sum_probs=156.2
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004791 447 TLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526 (730)
Q Consensus 447 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 526 (730)
+...+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+. +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 44566667777777777777777777776653 234667777777788888888888888888776543 6677888888
Q ss_pred HHHhc-CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004791 527 GYCKE-GKIDDAHSLLERMLSDDCLP-NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDF 604 (730)
Q Consensus 527 ~~~~~-g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 604 (730)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888888732223 35677888888888899999999998888754 45678888888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 605 DHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 605 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999998887654246777777888888899999999999888764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-12 Score=117.69 Aligned_cols=174 Identities=20% Similarity=0.171 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
+..+|..+...|.+.|++++|+..|++.++.+ |.+..++..+...|.+.|++++|...+.+..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56678888888888888888888888888765 5577788888888888888888888888887754 456777777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYS 676 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 676 (730)
.+...++++.|.+.+++..+..+. +...+..+..+|.+.|++++|++.|++..+.. +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 888888888888888888876433 67788888888888899999999988888753 3367888888888889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 004791 677 AFDVLKRMFDAGCEPSHHTY 696 (730)
Q Consensus 677 A~~~~~~m~~~g~~p~~~~~ 696 (730)
|++.|++.++. .|+...|
T Consensus 160 A~~~~~~al~~--~p~~a~~ 177 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKKAKY 177 (184)
T ss_dssp HHHHHHHHHHT--THHHHHH
T ss_pred HHHHHHHHHhC--CccCHHH
Confidence 99999888873 5655433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.5e-13 Score=138.27 Aligned_cols=301 Identities=15% Similarity=0.074 Sum_probs=171.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC-C
Q 004791 342 NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN----VVTYNALIDGYCKEGLMEAALQILDLMKSN----NCSP-N 412 (730)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~ 412 (730)
....+......+...|++++|...|+++.+.+.. + ..++..+...|...|++++|...+++.... +..+ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4445566666777777777777777777665322 2 245666666677777777777776665432 1011 1
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 004791 413 ARTYNELICGFCKRKNVHRAMSLLNELLEQNLS-PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFID 491 (730)
Q Consensus 413 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 491 (730)
..++..+...+...|++++|...++++++.... ++. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHH
Confidence 234444555555555555555555554432000 000 000223444444
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHHHc----CC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004791 492 TLCKRGR--------------------VEEAQVLFDSLEKK----GI-KAGEVIYTALIDGYCKEGKIDDAHSLLERMLS 546 (730)
Q Consensus 492 ~~~~~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 546 (730)
.+...|+ +++|...+++..+. +. .....++..+...|...|++++|...+++.++
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4445555 55555555544321 10 11234566677777777777777777777654
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 547 DDC-LPN----SYTYNALIDGLYRERKVQEALLLVEKMTKMG----VKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 547 ~~~-~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
... .++ ..++..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|.+.++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 011 2366677777778888888888887766421 011 145667777788888888888888877765
Q ss_pred CCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 004791 617 LGLK-PD----VYTYTAFIQAYCSIGKLDEAEDLIVKMNRE----GIVP-DSVTYTLLICAYAHLGLI 674 (730)
Q Consensus 617 ~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~ 674 (730)
.... .+ ..++..+..+|...|++++|.+.+++..+. +-.+ ...++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 3111 11 446677778888888888888888876642 1111 244566666666666655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-13 Score=140.67 Aligned_cols=272 Identities=13% Similarity=0.073 Sum_probs=165.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCh----hcHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCChhh
Q 004791 380 TYNALIDGYCKEGLMEAALQILDLMKSNNCSPNA----RTYNELICGFCKRKNVHRAMSLLNELLEQ----N-LSPTLIT 450 (730)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~ 450 (730)
.+..+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|++++|...++++++. + .+.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 33445555666666666666666665542 1122 34555555566666666666666555432 0 0111223
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCcCHHHHHHHH
Q 004791 451 YNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK----G-IKAGEVIYTALI 525 (730)
Q Consensus 451 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li 525 (730)
+..+...+ ...|++++|...++++.+. + ......++..+.
T Consensus 129 ~~~l~~~~-----------------------------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 129 SGNLGNTL-----------------------------------KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp HHHHHHHH-----------------------------------HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------------------------HHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 44444444 4445555554444444332 0 011233555566
Q ss_pred HHHHhcCC-----------------hhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004791 526 DGYCKEGK-----------------IDDAHSLLERMLSD----DC-LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMG 583 (730)
Q Consensus 526 ~~~~~~g~-----------------~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 583 (730)
..|...|+ +++|+..+++.++. +. +....++..+...+...|++++|...+++..+..
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 66666666 66666666655431 10 1123466777777788888888888887776521
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 584 V-KPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK-----PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 584 ~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
. ..+ ..++..+...+...|++++|.+.++++++.... ....++..+..+|...|++++|.+.+++..+..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0 011 236777888888889999999888887763111 124577888889999999999999999887531
Q ss_pred ----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 654 ----IVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 654 ----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
-.+ ...++..++..|...|++++|.+++++..+.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 001 1457788889999999999999999998764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-13 Score=139.68 Aligned_cols=236 Identities=10% Similarity=-0.026 Sum_probs=142.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHH
Q 004791 169 KGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNI----YTFNTMINGCCKVGNVGEAELYVSKIVQA----GL-SPDTF 239 (730)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~ 239 (730)
..+..+...+...|++++|+..|+++++.... +. .++..+...|...|++++|...++++.+. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44556667788899999999999999886422 32 46778888888999999999998887653 11 12345
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHhchhCC-----CCcChhhHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 004791 240 TYTSLILGYCRNKDVEKGFRVFMMMPKKG-----CRRNEVSYTNLIHGLCEAKR-----------------VDEALDLFR 297 (730)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 297 (730)
++..+...|...|++++|...+++..+.. .+....++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 67777788888888888888887765421 11234466677777777777 777777666
Q ss_pred HHhhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHH
Q 004791 298 RMGED----DC-RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE-PN----VHTYTVLIDCLCKENKVDEASELLN 367 (730)
Q Consensus 298 ~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~ 367 (730)
+..+. +. +....++..+...+...|++++|++.+++..+.... .+ ..++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65431 10 111235556666666666666666666665543111 01 1245555556666666666666665
Q ss_pred HHHHCCCC-----CChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 368 RMLEKGLF-----PNVVTYNALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 368 ~~~~~g~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
+..+.... ....++..+...|...|++++|.+.+++..
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55442100 012344445555555555555555554443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-11 Score=120.84 Aligned_cols=218 Identities=14% Similarity=0.111 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHH-cCCCcCHHHHHHHHHHHH
Q 004791 465 DSAYKVLHLINESGLVPDQFTYSVFIDTLC-------KRGRV-------EEAQVLFDSLEK-KGIKAGEVIYTALIDGYC 529 (730)
Q Consensus 465 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~ 529 (730)
++|..+|+++.... +-+...|..++..+. +.|++ ++|..+|++.++ ..+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 45666666666542 234555655555554 34664 788888888877 3332 5667888888888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 004791 530 KEGKIDDAHSLLERMLSDDCLPNSY-TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVL-KEGDFDHA 607 (730)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 607 (730)
+.|++++|..+|+++++.. +.+.. .|..++..+.+.|++++|..+|+++++.. +.+...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888753 22333 77778888888888888888888888754 344444543333322 26888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 608 HRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IVP--DSVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 608 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
.++|+++++..+. +...|..++..+.+.|++++|..+|++..+.. +.| ....|..++....+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888875432 67778888888888888888888888888752 344 4667888888888888888888888888
Q ss_pred HHc
Q 004791 685 FDA 687 (730)
Q Consensus 685 ~~~ 687 (730)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.8e-12 Score=113.68 Aligned_cols=167 Identities=18% Similarity=0.133 Sum_probs=130.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 561 (730)
+...|..+...+...|++++|+..|++.++..+. +..++..+..+|.+.|++++|+..+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4566777777788888888888888888777654 67778888888888888888888888877654 455667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
.+...++++.|...+.+..+.. +.+...+..+...+.+.|++++|++.|++.++..+. +..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 7788888888888888887754 456777888888888888888888888888876433 67788888888888888888
Q ss_pred HHHHHHHHHHC
Q 004791 642 AEDLIVKMNRE 652 (730)
Q Consensus 642 A~~~~~~m~~~ 652 (730)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888888873
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=136.04 Aligned_cols=240 Identities=11% Similarity=-0.036 Sum_probs=138.5
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPN----IYTFNTMINGCCKVGNVGEAELYVSKIVQA----GLSP 236 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~~~ 236 (730)
......+......+.+.|++++|+..|+++++.... + ..++..+...+...|++++|...++++... +..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345566677778888888999999999888876322 2 246777888888888888888888876542 1111
Q ss_pred -CHHhHHHHHHHHHhcCChhHHHHHHHhchhCCC-----CcChhhHHHHHHHHHhcCC--------------------HH
Q 004791 237 -DTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGC-----RRNEVSYTNLIHGLCEAKR--------------------VD 290 (730)
Q Consensus 237 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~--------------------~~ 290 (730)
...++..+...|...|++++|...+++..+... .....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 244566677777778888888777776654210 0013356666677777777 66
Q ss_pred HHHHHHHHHhhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHH
Q 004791 291 EALDLFRRMGED----DC-RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE-PN----VHTYTVLIDCLCKENKVD 360 (730)
Q Consensus 291 ~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~ 360 (730)
+|.+.+++..+. +. +....++..+...+...|++++|++.+++..+.... ++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 666666654331 10 111234555566666666666666666655432110 01 124555555555666666
Q ss_pred HHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 361 EASELLNRMLEKGLF-PN----VVTYNALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 361 ~A~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
+|...+++..+.... .+ ..++..+...|...|++++|.+.+++..
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 666655555432100 01 2344444555555555555555554443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-12 Score=135.26 Aligned_cols=215 Identities=14% Similarity=0.019 Sum_probs=169.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 004791 464 LDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRV-EEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLE 542 (730)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 542 (730)
++++++.++...... +.+...+..+...+...|++ ++|+..|+++.+..+. +...|..+..+|.+.|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555666554432 33666777777778888888 8888888888777544 67788888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 004791 543 RMLSDDCLPNSYTYNALIDGLYRE---------RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE--------GDFD 605 (730)
Q Consensus 543 ~~~~~~~~p~~~~~~~li~~~~~~---------~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 605 (730)
+.++.. |+...+..+...+... |++++|+..++++++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 888765 6677888888888888 88999999999888765 55788888888888888 8899
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 606 HAHRLLDQMVSLGLK--PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKR 683 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 683 (730)
+|++.|+++++..+. .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999886431 378889999999999999999999999998853 33577888888999999999998876654
Q ss_pred H
Q 004791 684 M 684 (730)
Q Consensus 684 m 684 (730)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-12 Score=128.41 Aligned_cols=275 Identities=16% Similarity=0.138 Sum_probs=165.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004791 381 YNALIDGYCKEGLMEAALQILDLMKSNNCSPN----ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIY 456 (730)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 456 (730)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++++++..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------- 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------
Confidence 3344455556666666666666655542 112 2344455555555555555555555543310
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHHHh
Q 004791 457 GQCREGHLDSAYKVLHLINESGLV-PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIK-----AGEVIYTALIDGYCK 530 (730)
Q Consensus 457 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~ 530 (730)
...+.. .....+..+...+...|++++|...+++..+.... ....++..+...|..
T Consensus 74 ------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 74 ------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp ------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 000000 01223444444555555555555555554432100 012355566666666
Q ss_pred cCC--------------------hhHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-
Q 004791 531 EGK--------------------IDDAHSLLERMLSD----D-CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGV- 584 (730)
Q Consensus 531 ~g~--------------------~~~A~~~~~~~~~~----~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~- 584 (730)
.|+ +++|...+++.... + .+....++..+...+...|++++|...+++..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666 66666666665431 1 011234667777778888888888888887764210
Q ss_pred CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 004791 585 KP----TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK-PD----VYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-- 653 (730)
Q Consensus 585 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-- 653 (730)
.+ ...++..+...+...|++++|.+.+++..+.... .+ ..++..+...+...|++++|...++++.+..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 01 1336778888889999999999999888753111 11 5577888899999999999999999887531
Q ss_pred --CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 654 --IVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 654 --~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
-.+ ...++..++..|...|++++|...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 011 1457788999999999999999999999863
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-11 Score=118.21 Aligned_cols=219 Identities=13% Similarity=0.100 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHH-------hCCCh-------hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 004791 430 HRAMSLLNELLEQNLSPTLITYNSLIYGQC-------REGHL-------DSAYKVLHLINESGLVPDQFTYSVFIDTLCK 495 (730)
Q Consensus 430 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 495 (730)
++|...|++++... +.+...|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56677777776642 335666666666654 34765 7888888888873122355678888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEV-IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY-RERKVQEAL 573 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~~~~~~A~ 573 (730)
.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|++.++.. +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888876433 333 78888888888888999999998888765 344455544433322 368899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 574 LLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG-LKP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 574 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
.+|+++++.. +.+...|..++..+.+.|++++|+.+|+++++.. +.| ....|..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998888753 4567888888888888899999999999998853 343 46678888888888999999999999988
Q ss_pred HC
Q 004791 651 RE 652 (730)
Q Consensus 651 ~~ 652 (730)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=130.89 Aligned_cols=234 Identities=11% Similarity=-0.025 Sum_probs=130.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHh
Q 004791 170 GYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPN----IYTFNTMINGCCKVGNVGEAELYVSKIVQA----GLS-PDTFT 240 (730)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~ 240 (730)
.+......+...|++++|+..|+++++.... + ...+..+...+...|++++|...++++.+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455566777888889999998888876322 3 346777788888888888888888876542 111 12445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCC-CcC----hhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGC-RRN----EVSYTNLIHGLCEAKR--------------------VDEALDL 295 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 295 (730)
+..+...|...|++++|...+++..+... ..+ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66677777777777777777776544210 011 2356666666777777 6666666
Q ss_pred HHHHhhC----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHH
Q 004791 296 FRRMGED----D-CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCE-PN----VHTYTVLIDCLCKENKVDEASEL 365 (730)
Q Consensus 296 ~~~m~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~ 365 (730)
+++..+. + .+....++..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6554321 1 0111234555555566666666666666555432100 01 12445555555555555555555
Q ss_pred HHHHHHCCCC-CC----hhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004791 366 LNRMLEKGLF-PN----VVTYNALIDGYCKEGLMEAALQILDLM 404 (730)
Q Consensus 366 ~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (730)
+++..+.... .+ ..++..+...|...|++++|...+++.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5554432100 00 233444444444555555555444443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=128.24 Aligned_cols=230 Identities=9% Similarity=-0.047 Sum_probs=167.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------cCHHHHH
Q 004791 454 LIYGQCREGHLDSAYKVLHLINES----GLVP-DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIK------AGEVIYT 522 (730)
Q Consensus 454 li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~ 522 (730)
....+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555667778888888888777653 1111 2356677777888888888888888877653111 1235678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDDC-LPN----SYTYNALIDGLYRERKVQEALLLVEKMTKM----GV-KPTVYTYT 592 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~~~~~~~~ 592 (730)
.+...|...|++++|+..+++.++... .++ ..++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999988775310 011 247888889999999999999999988862 32 33467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLGL---KP-DVYTYTAFIQAYCSIGK---LDEAEDLIVKMNREGIVP-DSVTYTLL 664 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~-~~~~~~~l 664 (730)
.+...+.+.|++++|.+.+++.++... .| ....+..+...+...|+ +++|+.++++. +..+ ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 899999999999999999998876311 11 22335678888888998 77777777765 2233 35577789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004791 665 ICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+..|...|++++|.+++++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999864
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=128.26 Aligned_cols=229 Identities=10% Similarity=-0.024 Sum_probs=145.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CC-----CHHhHHH
Q 004791 420 ICGFCKRKNVHRAMSLLNELLEQ----NLSP-TLITYNSLIYGQCREGHLDSAYKVLHLINESGL-VP-----DQFTYSV 488 (730)
Q Consensus 420 i~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~~ 488 (730)
...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+... .+ ...++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33444555666666665555442 1011 223455566666666666666666665543210 01 1245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHHH
Q 004791 489 FIDTLCKRGRVEEAQVLFDSLEKKGIK-----AGEVIYTALIDGYCKEGKIDDAHSLLERMLS-----DDCLPNSYTYNA 558 (730)
Q Consensus 489 li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 558 (730)
+...|...|++++|...+++..+.... ....++..+..+|...|++++|+..+++.++ ...+....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 667777777777777777776643111 1123677788888888888888888888776 221334567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKM----GVKPTVYTYTILIEEVLKEGD---FDHAHRLLDQMVSLGLKP-DVYTYTAFI 630 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 630 (730)
+...+.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..| ....+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 888888888888888888887652 111122335667777788888 77777777765 2222 344677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999988775
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-11 Score=127.97 Aligned_cols=210 Identities=9% Similarity=-0.043 Sum_probs=178.7
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004791 498 RVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKI-DDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLV 576 (730)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 576 (730)
.++++...++....... .+...+..+...|...|++ ++|+..|++.++.. +.+...|..+...|.+.|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35677777777666543 4788999999999999999 99999999999876 556889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCH
Q 004791 577 EKMTKMGVKPTVYTYTILIEEVLKE---------GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI--------GKL 639 (730)
Q Consensus 577 ~~m~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~ 639 (730)
+++++.. |+...+..+...+... |++++|++.++++++..+. +...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999864 7788999999999999 9999999999999997543 788999999999998 999
Q ss_pred HHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCChhhhhhhc
Q 004791 640 DEAEDLIVKMNREGIV---PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEP-SHHTYAFLIKHLSNKKVDERKQQC 715 (730)
Q Consensus 640 ~~A~~~~~~m~~~g~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~l~~~~~~e~~~~~ 715 (730)
++|++.|++..+.. + .+...|..++.+|...|++++|++.|++.++. .| +...+..+...+...|..+++.+.
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999853 2 37899999999999999999999999999875 44 445566777777777766665543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-12 Score=128.97 Aligned_cols=236 Identities=15% Similarity=0.095 Sum_probs=125.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CC
Q 004791 450 TYNSLIYGQCREGHLDSAYKVLHLINES-------GLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK------G-IK 515 (730)
Q Consensus 450 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~ 515 (730)
++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++++.+. + ..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3344444444444444444444444331 11112334444555555555555555555554432 1 11
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 004791 516 AGEVIYTALIDGYCKEGKIDDAHSLLERMLSD------DC-LPNSYTYNALIDGLYRERKVQEALLLVEKMTKM------ 582 (730)
Q Consensus 516 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------ 582 (730)
....++..+...|...|++++|...++++.+. +. +....++..+...+...|++++|+.+++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 12345566666666677777776666666542 11 123345666677777777777777777776653
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 583 GVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSL-------GLKPD-------VYTYTAFIQAYCSIGKLDEAEDLIV 647 (730)
Q Consensus 583 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 647 (730)
+..| ...++..+...+...|++++|.+.++++++. ...+. ...+..+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 1112 3456677777777888888888888777752 11111 1122233333445556666666777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 648 KMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 648 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+..... +.+..++..++.+|.+.|++++|.+++++.++
T Consensus 269 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 269 ACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666532 22467788889999999999999999998875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=129.99 Aligned_cols=172 Identities=10% Similarity=0.017 Sum_probs=126.7
Q ss_pred ccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----
Q 004791 165 KLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDN-------MVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQA----- 232 (730)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----- 232 (730)
+.+..++..+...+...|++++|+..|+++++. .......++..+...|...|++++|...++++++.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445678889999999999999999999999873 22224457888888999999999999999988764
Q ss_pred -CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHhchhC------C-CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-
Q 004791 233 -GL-SPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKK------G-CRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGED- 302 (730)
Q Consensus 233 -g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 302 (730)
+. .....++..+...|...|++++|...|+++.+. + .+....++..+...+...|++++|.+.|+++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 223556777888888888888888888877653 1 1234456777778888888888888888777653
Q ss_pred -----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 303 -----D-CRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA 336 (730)
Q Consensus 303 -----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (730)
+ .+....++..+...+...|++++|.+.++++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122344677777777788888888888777765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-10 Score=106.02 Aligned_cols=166 Identities=18% Similarity=0.112 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 518 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456667777888888888888888877654 4567778888888888888888888888888754 4567788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSA 677 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 677 (730)
+...|++++|.+.++++.+... .+...+..++.++...|++++|.+.++++.+.. +.+...+..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 8888999999999988887643 367788888888889999999999999888754 34678888888899999999999
Q ss_pred HHHHHHHHHc
Q 004791 678 FDVLKRMFDA 687 (730)
Q Consensus 678 ~~~~~~m~~~ 687 (730)
.+.++++.+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999888754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-10 Score=118.38 Aligned_cols=230 Identities=9% Similarity=-0.066 Sum_probs=166.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----C-cCHHHH
Q 004791 453 SLIYGQCREGHLDSAYKVLHLINESGL-VPD----QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI-----K-AGEVIY 521 (730)
Q Consensus 453 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~-~~~~~~ 521 (730)
.....+...|++++|...++++.+... .++ ..++..+...|...|++++|...+++..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556677888888888887765311 122 34567777788888888888888887765311 1 124567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 004791 522 TALIDGYCKEGKIDDAHSLLERMLSD----DCL-PNSYTYNALIDGLYRERKVQEALLLVEKMTK-----MGVKPTVYTY 591 (730)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~~~~~~~ 591 (730)
+.+..+|...|++++|.+.+++.++. +.+ ....++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888899999999999998887653 111 1234677888889999999999999998886 43 3346778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHH
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGL---KP-DVYTYTAFIQAYCSIGK---LDEAEDLIVKMNREGIVP-DSVTYTL 663 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~-~~~~~~~ 663 (730)
..+...+.+.|++++|.+.+++..+... .+ ....+..+...+...|+ +++|+.++++. +..+ ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 8899999999999999999999887421 12 23355666677777888 77777777762 2223 2456678
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004791 664 LICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
++..|...|++++|.+.|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999998864
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.4e-11 Score=130.70 Aligned_cols=165 Identities=14% Similarity=0.075 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
+...++.|..+|.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35567777777777777777777777777754 4456677777777777777777777777777654 445677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIY 675 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~ 675 (730)
++...|++++|++.|+++++.... +...|..+..+|...|++++|++.|++..+. .| +...|..++.+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 777778888888888777775433 5667777777788888888888888877773 34 4677777777788888887
Q ss_pred HHHHHHHHHHH
Q 004791 676 SAFDVLKRMFD 686 (730)
Q Consensus 676 ~A~~~~~~m~~ 686 (730)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.2e-10 Score=113.67 Aligned_cols=232 Identities=12% Similarity=-0.010 Sum_probs=123.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHhHHH
Q 004791 173 TLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIY----TFNTMINGCCKVGNVGEAELYVSKIVQAGLS-PD----TFTYTS 243 (730)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~ 243 (730)
.....+...|++++|...+++++......+.. +++.+...+...|++++|...+.+....... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667888999999998888764333322 4556667777888888888888877653110 11 122455
Q ss_pred HHHHHHhcCChhHHHHHHHhchhC----CCC--c-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--C--ChhhHH
Q 004791 244 LILGYCRNKDVEKGFRVFMMMPKK----GCR--R-NEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCR--P--TVRTYT 312 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~--~~~~~~ 312 (730)
+...+...|++++|...+++..+. +.+ + ....+..+...+...|++++|...+++..+.... + ...+|.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 566667777777777777665431 111 1 2234455666666666666666666665442110 0 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHH
Q 004791 313 VVIFGLCRVGRKSEALEFFNEMSARGCEPNV-HTYT-----VLIDCLCKENKVDEASELLNRMLEKGLFPN---VVTYNA 383 (730)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ 383 (730)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 5555666666666666666655432111111 1111 122334455666666666555543221110 112344
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q 004791 384 LIDGYCKEGLMEAALQILDLM 404 (730)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m 404 (730)
+...+...|++++|...++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-10 Score=108.07 Aligned_cols=208 Identities=10% Similarity=0.010 Sum_probs=160.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004791 481 PDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALI 560 (730)
Q Consensus 481 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 560 (730)
.|+..+......+...|++++|...|++..+..+.++...+..+..++...|++++|+..+++.++.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888899999999999999999988764577777779999999999999999999999876 45677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTV-------YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD---VYTYTAFI 630 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 630 (730)
..+...|++++|+..+++.++.. +.+. ..|..+...+...|++++|++.|+++++. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998864 3455 55788888889999999999999999875 444 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKH 702 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 702 (730)
.+|...| ...++++...+ ..+...|.... ....|.+++|+..+++.++. .|+......++..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHH
Confidence 7776544 44556666543 23444444433 34567789999999999875 6766555544443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.2e-10 Score=116.93 Aligned_cols=227 Identities=9% Similarity=-0.061 Sum_probs=146.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-CC----ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC-----CC-CHHhHHHH
Q 004791 421 CGFCKRKNVHRAMSLLNELLEQNL-SP----TLITYNSLIYGQCREGHLDSAYKVLHLINESGL-----VP-DQFTYSVF 489 (730)
Q Consensus 421 ~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~-~~~~~~~l 489 (730)
..+...|++++|+..++++.+... .+ ...++..+...+...|+++.|...+++..+... .+ ...++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344556666666666666554310 01 133556666667777777777776666544210 11 13456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKK----GIK-AGEVIYTALIDGYCKEGKIDDAHSLLERMLS-----DDCLPNSYTYNAL 559 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 559 (730)
...|...|++++|...+++..+. +.. ....++..+..+|...|++++|+..+++.+. .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 77777778888887777776653 111 1234677788888888888888888888776 43 3336677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 004791 560 IDGLYRERKVQEALLLVEKMTKMG----VKPTVYTYTILIEEVLKEGD---FDHAHRLLDQMVSLGLKP-DVYTYTAFIQ 631 (730)
Q Consensus 560 i~~~~~~~~~~~A~~~~~~m~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 631 (730)
...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|+..+++. +..+ ....+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence 888888889999988888887631 12223445566666667777 77777777662 2222 2345667888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004791 632 AYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~ 651 (730)
.|...|++++|.+.+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999888765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-09 Score=112.59 Aligned_cols=233 Identities=13% Similarity=-0.006 Sum_probs=140.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHhchhCCC-CcC----hhhHHH
Q 004791 208 TMINGCCKVGNVGEAELYVSKIVQAGLSPDTF----TYTSLILGYCRNKDVEKGFRVFMMMPKKGC-RRN----EVSYTN 278 (730)
Q Consensus 208 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ 278 (730)
.....+...|++++|...+++........+.. +++.+...+...|++++|...+++.....- ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455667899999999999988764333322 456666777888888888888887654210 011 223566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----ChhhHH
Q 004791 279 LIHGLCEAKRVDEALDLFRRMGED----DCR--P-TVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP----NVHTYT 347 (730)
Q Consensus 279 li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~ 347 (730)
+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++........ ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777778888888888888776542 211 2 23455667777778888888888887776542221 124566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---hhcHHH
Q 004791 348 VLIDCLCKENKVDEASELLNRMLEKGLFPNV-VTYN-----ALIDGYCKEGLMEAALQILDLMKSNNCSPN---ARTYNE 418 (730)
Q Consensus 348 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ 418 (730)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 6777777778888888777776643111111 1111 222335677777777777776654321111 112344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004791 419 LICGFCKRKNVHRAMSLLNELL 440 (730)
Q Consensus 419 li~~~~~~~~~~~A~~~~~~~~ 440 (730)
+...+...|++++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666665544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-10 Score=103.03 Aligned_cols=163 Identities=22% Similarity=0.157 Sum_probs=117.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 485 TYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY 564 (730)
Q Consensus 485 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 564 (730)
.+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4445555666677777777777766655332 56667777777777777777777777776654 445667777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 565 RERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAED 644 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 644 (730)
..|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.+... .+...+..++..+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 7788888888887777654 45667777777888888888888888888777542 256777788888888888888888
Q ss_pred HHHHHHH
Q 004791 645 LIVKMNR 651 (730)
Q Consensus 645 ~~~~m~~ 651 (730)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-10 Score=127.38 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=116.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...++.+...+.+.|++++|+..|++.++..+. +..+|..+..+|.+.|++++|+..|++.++.+ +.+...|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455666666777777777777777777666543 56667777777777777777777777777654 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 642 (730)
|.+.|++++|++.|++.++.. +.+...|+.+..+|...|++++|++.|+++++..+. +...|..++.+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777777654 445677777777777777777777777777775433 566777777777777777777
Q ss_pred HHHHHHHHH
Q 004791 643 EDLIVKMNR 651 (730)
Q Consensus 643 ~~~~~~m~~ 651 (730)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-09 Score=103.75 Aligned_cols=194 Identities=11% Similarity=-0.039 Sum_probs=106.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 004791 448 LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDG 527 (730)
Q Consensus 448 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 527 (730)
+..+......+...|++++|++.|++..+....++...+..+..++...|++++|...+++..+..+. +...+..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 34455555555555666666666655555433244455555555566666666666666666655433 44556666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNS-------YTYNALIDGLYRERKVQEALLLVEKMTKMGVKP--TVYTYTILIEEV 598 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~~ 598 (730)
|...|++++|+..+++.++.. +.+. ..|..+...+...|++++|++.|+++++.. +. +...+..+..++
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHH
Confidence 666666666666666666543 2233 345555666666677777777777666643 22 345555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 599 LKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
... +..+++++...+.. +...|.... ....|.+++|...+++..+.
T Consensus 164 ~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 433 23334444443222 333343332 23345577777777777763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=112.51 Aligned_cols=227 Identities=15% Similarity=0.048 Sum_probs=158.8
Q ss_pred HhCCChhHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCcCHHHHHHH
Q 004791 459 CREGHLDSAYKVLHLINES-------GLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKK------G-IKAGEVIYTAL 524 (730)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l 524 (730)
...|++++|...+++..+. ..+....++..+...+...|++++|...++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567788888777766552 22224567888889999999999999999998765 1 12245678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSD------D-CLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM------G-VKPTVYT 590 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~------~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~-~~~~~~~ 590 (730)
...|...|++++|...+++.+.. . .+....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1234567888899999999999999999998864 1 1224567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCC
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSL-------GLKP-DVYTYTAFIQAYCSIGKL------DEAEDLIVKMNREGIVP 656 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~------~~A~~~~~~m~~~g~~~ 656 (730)
+..+...+...|++++|.+.++++++. ...+ ....|..+...+...+.. .++...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999998863 1112 223344444444433332 2222222222111 011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 657 DSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 657 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
...++..++..|...|++++|..++++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356788899999999999999999999875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-09 Score=105.50 Aligned_cols=192 Identities=10% Similarity=-0.006 Sum_probs=122.9
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--CHHHHHHHHHH
Q 004791 493 LCKRGRVEEAQVLFDSLEKK----GIKA-GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC---LP--NSYTYNALIDG 562 (730)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~li~~ 562 (730)
|...|++++|...|.+..+. +..+ ...+|+.+..+|.+.|++++|+..+++.++... .+ -..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555544432 1111 134566666667777777777776666654210 01 13467777888
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHH
Q 004791 563 LYRE-RKVQEALLLVEKMTKMGVK-PT----VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV------YTYTAFI 630 (730)
Q Consensus 563 ~~~~-~~~~~A~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~ 630 (730)
|... |++++|+..|++.++.... .+ ..++..++..+...|++++|++.|+++.+....... ..|..++
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8885 8888888888888753200 11 356788888999999999999999999886433221 2567778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNREGIVPDS------VTYTLLICAYA--HLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 686 (730)
.++...|++++|...+++..+ +.|+. ..+..++.++. ..+++++|++.|+++..
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 888899999999999999876 33432 13445556664 45678888888877643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-10 Score=111.28 Aligned_cols=226 Identities=13% Similarity=0.029 Sum_probs=136.5
Q ss_pred cCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCC-CCHHhHHHHHH
Q 004791 181 FHLVDEMKRVYLEMLDN-------MVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQA------GLS-PDTFTYTSLIL 246 (730)
Q Consensus 181 ~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------g~~-~~~~~~~~li~ 246 (730)
.|++++|+..|+++++. .......++..+...|...|++++|...+.++++. +.. ....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 35555555555555442 11123446677777777777777777777777653 111 23456677777
Q ss_pred HHHhcCChhHHHHHHHhchhC------C-CCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CCCChhhHH
Q 004791 247 GYCRNKDVEKGFRVFMMMPKK------G-CRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGED------D-CRPTVRTYT 312 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~ 312 (730)
.|...|++++|.+.|++.... . .+....++..+...+...|++++|.+.|+++.+. + .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 777888888888777776653 1 1234566777888888888888888888877653 1 122345777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-hhhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCh
Q 004791 313 VVIFGLCRVGRKSEALEFFNEMSAR-------GCEPN-VHTYTVLIDCLCKENKVD------EASELLNRMLEKGLFPNV 378 (730)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~-~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~g~~~~~ 378 (730)
.+...+...|++++|.+.++++.+. ...+. ...+..+...+...+... ++...++..... .+...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHH
Confidence 8888888888888888888877653 11222 233333333333333222 222222221111 11234
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004791 379 VTYNALIDGYCKEGLMEAALQILDLMKSN 407 (730)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (730)
.++..+...|.+.|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56778888889999999999998887653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-07 Score=100.02 Aligned_cols=203 Identities=9% Similarity=-0.005 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004791 466 SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERML 545 (730)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 545 (730)
.+..+|+++.... +.+...|...+..+.+.|+.++|..++++.... +. +...|... ....+.++. ++.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~~y----~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSLYY----GLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHHHH----HHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHHHH----HhhcchhHH---HHHHH
Confidence 3455666665542 334566666666666777777777777777766 22 33333222 111111111 12211
Q ss_pred hC---C------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 004791 546 SD---D------C---LPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG-DFDHAHRLLD 612 (730)
Q Consensus 546 ~~---~------~---~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 612 (730)
+. . . ......|...+..+.+.++.+.|..+|+++ +.. ..+...|...+..-...+ +.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 10 0 0 011245666777777788899999999988 322 234445543333333333 6999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 613 QMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 613 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
..++.... +...|...++...+.|+.+.|..+|+++. .....|...+..=...|+.+.+.++++++.+
T Consensus 345 ~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99885322 45567777888888999999999999972 3577788888777788999999998888873
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-07 Score=99.85 Aligned_cols=125 Identities=9% Similarity=0.057 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRER-KVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
.+|...+..+.+.+..+.|..+|++. ... ..+...|...+..-...+ +.+.|..+|+..++.. +.+...+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666666666677788888888877 321 123344433332222223 5888888888877643 3344555666777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..+.|+.+.|+.+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888862 2466777777777777888888887777763
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.1e-09 Score=97.46 Aligned_cols=136 Identities=13% Similarity=0.042 Sum_probs=97.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 638 (730)
+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|++.|+++++..+. +...|..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 7778888888999988888888765 557788888888888899999999999888886533 67788888888766554
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004791 639 --LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLI 700 (730)
Q Consensus 639 --~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 700 (730)
.+.+...+++... ..|....+..++.++...|++++|+..|++.++ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 3445555555542 222333455566677778889999999998886 477765554443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=9.3e-09 Score=87.74 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
.|..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|.++++++.+.+. .+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 35556666667777777777777776643 34566677777777777777777777777776542 25666777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 635 SIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
..|++++|.++++++.+.. +.+...+..++..+...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888777643 335667777777888888888888888877654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-09 Score=96.17 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=100.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 004791 522 TALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE 601 (730)
Q Consensus 522 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 601 (730)
..+..+|.+.|++++|+..+++.++.+ |.+...+..+...+...|++++|+..|+++++.. +.+..++..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 347888888999999999999988875 5577888888889999999999999999988865 55778888888887665
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 602 GD--FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLI 665 (730)
Q Consensus 602 g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 665 (730)
|+ .+.+...+++... ..|....+..+..++...|++++|+..|++.++ +.|+......+.
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 54 4455666666542 233333445556677778899999999999987 568765544443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.03 E-value=4.4e-08 Score=94.49 Aligned_cols=179 Identities=10% Similarity=0.068 Sum_probs=102.4
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004791 467 AYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI-KAGEVIYTALIDGYCKEGKIDDAHSLLERML 545 (730)
Q Consensus 467 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 545 (730)
|+..+++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 33444455666666667777777777776655543 1245566666777777777777777777776
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 546 SDDCLP-----NSYTYNALIDG--LYRER--KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 546 ~~~~~p-----~~~~~~~li~~--~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
+.. | +..+...++.+ ....| ++++|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 543 4 23444444444 22223 677777777776654 24433333344466677777777777765543
Q ss_pred CC-----C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 617 LG-----L----KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 617 ~~-----~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
.. - +.|..++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 0 1245555455555555565 677777777763
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-08 Score=98.71 Aligned_cols=187 Identities=11% Similarity=-0.001 Sum_probs=104.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG---EVIYTALIDGYCKEGKIDDAHSLLERMLSDDC--LPNSYTYN 557 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~ 557 (730)
...+..+...+.+.|++++|...|+++.+..+. + ...+..+..+|.+.|++++|+..|++.++... +.....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 444444555555556666666666665554322 2 34455555555556666666666665555321 11123444
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004791 558 ALIDGLYR--------ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAF 629 (730)
Q Consensus 558 ~li~~~~~--------~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 629 (730)
.+..++.. .|++++|+..|+++++.. +.+......+. .+..+... -...+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~--------------~~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQ--------------KIRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHH--------------HHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHH--------------HHHHHHHH----HHHHHHHH
Confidence 44455555 555555555555555432 11111111110 00000000 01123567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCH
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNREGIVPD----SVTYTLLICAYAHL----------GLIYSAFDVLKRMFDAGCEPSH 693 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~ 693 (730)
+.+|.+.|++++|+..|+++.+.. |+ ...+..++.+|... |++++|+..|+++++. .|+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 888999999999999999998743 43 45777888888866 8899999999999875 4554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.7e-08 Score=93.58 Aligned_cols=229 Identities=10% Similarity=0.004 Sum_probs=163.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----Hhc---CC
Q 004791 463 HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRG--RVEEAQVLFDSLEKKGIKAGEVIYTALIDGY----CKE---GK 533 (730)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 533 (730)
..++|+++++.++.... -+...|+.--..+...| ++++++..++.++..+++ +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 34577777777776532 24555666666666777 888888888888877655 555665544444 444 67
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------HH
Q 004791 534 IDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQ--EALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD------FD 605 (730)
Q Consensus 534 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~------~~ 605 (730)
+++++.+++++++.+ +.+..+|+.-...+.+.|.++ +++++++++++.. +-|...|+.....+...|. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 888888888888765 567778877777777777777 8888888888765 4577777777777766666 88
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE-AEDLIVKMNREG--IVPDSVTYTLLICAYAHLGLIYSAFDVLK 682 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 682 (730)
++++.+++++...+. |...|+.+...+.+.|+..+ +..+.+++.+.+ -..+...+..++.+|.+.|+.++|+++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888888887544 78888888888888887444 555666655422 12367788888888888899999999999
Q ss_pred HHHHcCCCCCHHHHH
Q 004791 683 RMFDAGCEPSHHTYA 697 (730)
Q Consensus 683 ~m~~~g~~p~~~~~~ 697 (730)
.+.++ +.|-..-|.
T Consensus 283 ~l~~~-~Dpir~~yW 296 (306)
T 3dra_A 283 LLKSK-YNPIRSNFW 296 (306)
T ss_dssp HHHHT-TCGGGHHHH
T ss_pred HHHhc-cChHHHHHH
Confidence 88753 456554444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-08 Score=87.14 Aligned_cols=130 Identities=21% Similarity=0.285 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVL 599 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 599 (730)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566667777777777777777776654 3456667777777777777777777777777654 445667777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
..|++++|.+.++++.+... .+...+..++.++...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888887776542 25667777778888888888888888877763
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-09 Score=100.05 Aligned_cols=187 Identities=7% Similarity=-0.027 Sum_probs=137.8
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--cCHHH
Q 004791 446 PTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPD---QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIK--AGEVI 520 (730)
Q Consensus 446 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 520 (730)
.+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|+++++..+. .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45677888889999999999999999999986432 3 567888899999999999999999999987542 12456
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004791 521 YTALIDGYCK--------EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYT 592 (730)
Q Consensus 521 ~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 592 (730)
+..+..++.. .|++++|+..|+++++.. +.+......+.. +..+.. .....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~----~~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRA----KLARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 7788888888 999999999999999865 222222222211 111110 0012255
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAYCSI----------GKLDEAEDLIVKMNRE 652 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 652 (730)
.+...|.+.|++++|+..|+++++..+.. ....+..++.+|... |++++|...++++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 67788888999999999999888753321 245677777788766 8889999999998874
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-08 Score=93.11 Aligned_cols=175 Identities=14% Similarity=0.069 Sum_probs=105.5
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 004791 502 AQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRER----KVQEALLLVE 577 (730)
Q Consensus 502 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~----~~~~A~~~~~ 577 (730)
|...|++..+.| +...+..+...|...+++++|+..|++..+.+ +...+..|...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 45556666666666666666666666666554 44555555555555 4 6666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 004791 578 KMTKMGVKPTVYTYTILIEEVLK----EGDFDHAHRLLDQMVSLGLK-PDVYTYTAFIQAYCS----IGKLDEAEDLIVK 648 (730)
Q Consensus 578 ~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 648 (730)
+..+.| +...+..|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 666543 45555566666655 56677777777776665421 014556666666666 6667777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 004791 649 MNREGIVPDSVTYTLLICAYAHL-G-----LIYSAFDVLKRMFDAG 688 (730)
Q Consensus 649 m~~~g~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g 688 (730)
..+. ..+...+..|...|... | +.++|..+|++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7664 13444566666666543 2 6777777777776665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-07 Score=91.61 Aligned_cols=247 Identities=10% Similarity=0.023 Sum_probs=168.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 004791 424 CKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQ 503 (730)
Q Consensus 424 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 503 (730)
.-.|.+..++.-..++. .......-.-+.+++...|+++.. ....|....+..+...+ ..+ |+
T Consensus 24 fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 34567766665322211 111122233345667777766532 12234443444444333 322 67
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 504 VLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC-LPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
..+++....+ .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888877665 33556667888999999999999999999987652 246778888999999999999999999999875
Q ss_pred CCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 004791 583 GVKP-----TVYTYTILIEE--VLKEG--DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE- 652 (730)
Q Consensus 583 ~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 652 (730)
.| +..+...+..+ ....| ++++|..+|+++.+. .|+......++.++.+.|++++|.+.++.+.+.
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45 35556666656 33445 899999999999765 345334445555889999999999999977652
Q ss_pred ----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004791 653 ----GI----VPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTY 696 (730)
Q Consensus 653 ----g~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 696 (730)
+. +.|..++..++......|+ +|.+++.++.+. .|+....
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i 289 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAFI 289 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHH
Confidence 10 2367777677777777887 899999999874 6766443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=9e-09 Score=101.57 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHhchhCC----CCc-ChhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCC-CC----h
Q 004791 240 TYTSLILGYCRNKDVEKGFRVFMMMPKKG----CRR-NEVSYTNLIHGLCEA-KRVDEALDLFRRMGEDDCR-PT----V 308 (730)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~-~~----~ 308 (730)
+|+.+..+|.+.|++++|+..|++..+.. -.. -..+++.+...|... |++++|+..|++..+.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 44444444555555555554444443211 000 123556666666664 7777777776666543100 01 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---h
Q 004791 309 RTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVH------TYTVLIDCLCKENKVDEASELLNRMLEKGLF-PN---V 378 (730)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~---~ 378 (730)
.+|..+...+.+.|++++|+..|++..+........ .|..+..++...|++++|...|++.++.... ++ .
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 356666777777777777777777776654332211 3555666677777777777777776653211 01 1
Q ss_pred hhHHHHHHHHH--hCCCHHHHHHHHHHHHh
Q 004791 379 VTYNALIDGYC--KEGLMEAALQILDLMKS 406 (730)
Q Consensus 379 ~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 406 (730)
..+..++..+. ..+++++|+..|+.+..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 12333444443 34567777777766554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-09 Score=118.39 Aligned_cols=173 Identities=7% Similarity=-0.106 Sum_probs=104.2
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004791 494 CKRGRVEEAQVLFDSLE--------KKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR 565 (730)
Q Consensus 494 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 565 (730)
...|++++|++.++++. +..+. +...+..+..+|.+.|++++|+..++++++.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45566666666666665 33222 44556666666666666666666666666654 3455666666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 566 ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDL 645 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 645 (730)
.|++++|+..|+++++.. +.+...+..+..++.+.|++++ ++.|+++++.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 667777777766666644 3355666666666666777766 6666666665432 555666666667777777777777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004791 646 IVKMNREGIVPD-SVTYTLLICAYAHLGL 673 (730)
Q Consensus 646 ~~~m~~~g~~~~-~~~~~~l~~~~~~~g~ 673 (730)
|+++.+. .|+ ...|..++.++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7666653 343 4555556666544443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.4e-08 Score=89.77 Aligned_cols=176 Identities=15% Similarity=0.061 Sum_probs=117.9
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 004791 466 SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEG----KIDDAHSLL 541 (730)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 541 (730)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.+ +...+..|...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555566555543 45566666666666677777777777776654 45566666666666 5 677777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 004791 542 ERMLSDDCLPNSYTYNALIDGLYR----ERKVQEALLLVEKMTKMGVK-PTVYTYTILIEEVLK----EGDFDHAHRLLD 612 (730)
Q Consensus 542 ~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 612 (730)
++..+.+ +...+..|...|.. .+++++|+++|++..+.+.. .+...+..|...|.. .+++++|++.|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 55666667766665 67788888888877776511 125667777777777 777888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 004791 613 QMVSLGLKPDVYTYTAFIQAYCSI-G-----KLDEAEDLIVKMNREG 653 (730)
Q Consensus 613 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g 653 (730)
+..+.+ .+...+..|..+|... | ++++|..++++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 887752 2344566677776543 3 7888888888887765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-09 Score=93.73 Aligned_cols=118 Identities=9% Similarity=0.014 Sum_probs=54.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004791 565 RERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAED 644 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 644 (730)
..|++++|+..+++..... +.+...+..+...|.+.|++++|++.|+++++..+. +..+|..+..+|...|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHH
Confidence 3444455555544444321 112233334444555555555555555555543322 44455555555555555555555
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHH
Q 004791 645 LIVKMNREGIVP-DSVTYTLLICAYAHLGLIYSAFDV-LKRMFD 686 (730)
Q Consensus 645 ~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 686 (730)
.|++..+. .| +..+|..++..|.+.|++++|.+. +++.++
T Consensus 87 ~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 87 CYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555542 23 344455555555555555443332 344443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.2e-07 Score=88.74 Aligned_cols=217 Identities=11% Similarity=0.076 Sum_probs=132.4
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHH----Hhc---CCHH
Q 004791 290 DEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG--RKSEALEFFNEMSARGCEPNVHTYTVLIDCL----CKE---NKVD 360 (730)
Q Consensus 290 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~~ 360 (730)
++|+++++.+...+ +-+..+|+.-...+...| +++++++.++.++..+++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 56777777776654 334556666666666666 777777777777766555 555555544444 344 5677
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHH--HHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCC------HHHH
Q 004791 361 EASELLNRMLEKGLFPNVVTYNALIDGYCKEGLME--AALQILDLMKSNNCSPNARTYNELICGFCKRKN------VHRA 432 (730)
Q Consensus 361 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------~~~A 432 (730)
+++++++++.+...+ +..+|+.-.-.+.+.|.++ +++++++++.+.+ +.|...|+.-...+...+. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 777777777766443 6666666666666666666 7777777777654 4455666655555555554 6677
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH-HHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 433 MSLLNELLEQNLSPTLITYNSLIYGQCREGHLDS-AYKVLHLINESG--LVPDQFTYSVFIDTLCKRGRVEEAQVLFDSL 509 (730)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 509 (730)
++.+.+++... +-|...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+..++.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77777766653 2366667666666666665333 334444443322 1234555666666666666666666666666
Q ss_pred HH
Q 004791 510 EK 511 (730)
Q Consensus 510 ~~ 511 (730)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.1e-09 Score=92.18 Aligned_cols=144 Identities=10% Similarity=0.004 Sum_probs=84.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 004791 525 IDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDF 604 (730)
Q Consensus 525 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 604 (730)
...+...|++++|+..+....... +.+...+..+...|.+.|++++|++.|++.++.. +.+..+|..+..++...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344455566666666666655432 2223344556666666666666766666666654 44566666666677777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 004791 605 DHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDL-IVKMNREGIVP-DSVTYTLLICAYAHLGL 673 (730)
Q Consensus 605 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~~-~~~~~~~l~~~~~~~g~ 673 (730)
++|+..|+++++..+. +...|..+..+|.+.|++++|.+. +++..+. .| +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 7777777766665322 556666666667777766655443 4666653 34 45566665556655553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-08 Score=92.59 Aligned_cols=161 Identities=11% Similarity=0.103 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE-VL 599 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~ 599 (730)
+..+...+.+.|++++|+..+++.++.. +.+...+..+...+...|++++|+..++++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3444555666666666666666655543 3455566666666666666666666666665533 243333222211 11
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIYSAF 678 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~ 678 (730)
..+...+|+..+++.++..+. +...+..+..++...|++++|...++++.+....+ +...+..++.++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222233467777777765332 56777777777888888888888888877743111 2456777777788888888888
Q ss_pred HHHHHHH
Q 004791 679 DVLKRMF 685 (730)
Q Consensus 679 ~~~~~m~ 685 (730)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=113.38 Aligned_cols=173 Identities=12% Similarity=-0.019 Sum_probs=94.7
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004791 284 CEAKRVDEALDLFRRMG--------EDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCK 355 (730)
Q Consensus 284 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 355 (730)
...|++++|++.|++.. +.. +.+...|..+...+...|++++|++.|+++.+.++. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 45566666666666655 322 334455555666666666666666666666554333 45556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHH
Q 004791 356 ENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSL 435 (730)
Q Consensus 356 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 435 (730)
.|++++|...|++.++.... +...|..+...|.+.|++++ .+.|++..+.+ +.+...|..+...+.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666554322 44555566666666666666 66666655543 33455566666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhCC
Q 004791 436 LNELLEQNLSPTLITYNSLIYGQCREG 462 (730)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~li~~~~~~g 462 (730)
|+++++.. +.+...+..+..++...+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC---
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccC
Confidence 66655432 112344444555544433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-08 Score=107.06 Aligned_cols=154 Identities=12% Similarity=0.059 Sum_probs=88.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLL 575 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 575 (730)
.|++++|...++++.+..+. +...+..+...|.+.|++++|.+.+++.++.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666777777766665433 45666666777777777777777777776654 44566666666677777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 004791 576 VEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI---GKLDEAEDLIVKMNRE 652 (730)
Q Consensus 576 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 652 (730)
+++..+.. +.+...+..+..++...|++++|.+.++++.+.... +...+..+..++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 77666643 345666666667777777777777777776665322 455666666666666 6777777777776664
Q ss_pred C
Q 004791 653 G 653 (730)
Q Consensus 653 g 653 (730)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-08 Score=97.78 Aligned_cols=163 Identities=17% Similarity=0.081 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTI-LI 595 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-l~ 595 (730)
+...+..+...+.+.|++++|...+++.+... +.+...+..+...+.+.|++++|...++++.... |+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44555666667777777777777777777655 4466677777777777777777777777766543 44333222 22
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 004791 596 EEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD---SVTYTLLICAYAHLG 672 (730)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g 672 (730)
..+...++.++|.+.+++.++..+. +...+..+...|...|++++|...++++.+.. |+ ...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcC
Confidence 3355667777777777777775432 66777777888888888888888888877743 42 567777788888888
Q ss_pred CHHHHHHHHHHHH
Q 004791 673 LIYSAFDVLKRMF 685 (730)
Q Consensus 673 ~~~~A~~~~~~m~ 685 (730)
+.++|...|++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888877777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.89 E-value=9e-08 Score=90.25 Aligned_cols=184 Identities=15% Similarity=0.108 Sum_probs=115.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG--EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS---YTYN 557 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~ 557 (730)
...+..+...+.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|+..|+++++.. |.+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 34455566677788888888888888887644321 3467777888888888888888888887754 1111 2344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004791 558 ALIDGLYR------------------ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGL 619 (730)
Q Consensus 558 ~li~~~~~------------------~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 619 (730)
.+..++.. .|++++|+..|+++++.. +.+...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH-----
Confidence 44444443 344555555555555432 1111111110000 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 620 KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD----SVTYTLLICAYAHLGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 688 (730)
......+...|.+.|++++|+..|+++.+.. |+ ...+..++.+|.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112356677889999999999999999853 44 2568889999999999999999999888753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-08 Score=88.62 Aligned_cols=158 Identities=11% Similarity=0.069 Sum_probs=72.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHH-HHhcC
Q 004791 209 MINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHG-LCEAK 287 (730)
Q Consensus 209 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g 287 (730)
....+.+.|++++|...|+++++.. +.+...+..+...+.+.|++++|...|++..... |+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 3344445555555555555544332 1234445555555555555555555555554422 122222211111 11112
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 004791 288 RVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP-NVHTYTVLIDCLCKENKVDEASELL 366 (730)
Q Consensus 288 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 366 (730)
+..+|.+.|++..+.+ +.+...+..+...+...|++++|+..|+++.+..+.+ +...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223455555554432 2234555555555555555555555555555543322 2334555555555555555555555
Q ss_pred HHHH
Q 004791 367 NRML 370 (730)
Q Consensus 367 ~~~~ 370 (730)
++.+
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-08 Score=107.17 Aligned_cols=156 Identities=10% Similarity=-0.021 Sum_probs=120.5
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 004791 461 EGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSL 540 (730)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 540 (730)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999888753 235778888999999999999999999999987654 678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHC
Q 004791 541 LERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE---GDFDHAHRLLDQMVSL 617 (730)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 617 (730)
+++.++.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 5578889999999999999999999999998865 45788889999999999 9999999999999986
Q ss_pred CCC
Q 004791 618 GLK 620 (730)
Q Consensus 618 ~~~ 620 (730)
+..
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-07 Score=87.82 Aligned_cols=189 Identities=6% Similarity=-0.053 Sum_probs=118.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HhHHH
Q 004791 168 VKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVP-N-IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDT--FTYTS 243 (730)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ 243 (730)
...+..+...+.+.|++++|+..|+++++..+.. . ...+..+..+|.+.|++++|+..|+++++..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3456666777888999999999999998754321 1 346778889999999999999999999886433221 23444
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh--------------
Q 004791 244 LILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVR-------------- 309 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------------- 309 (730)
+..++.+.|.. .+ ..|..+...+...|++++|...|+++.+.. +-+..
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHH
Confidence 44445432100 00 001111222223344444444444444332 11111
Q ss_pred ---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 310 ---TYTVVIFGLCRVGRKSEALEFFNEMSARGCEPN--VHTYTVLIDCLCKENKVDEASELLNRMLEKGL 374 (730)
Q Consensus 310 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 374 (730)
....+...|.+.|++++|+..|+++++..+... ...+..+..++.+.|+.++|.+.++.+...+.
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 113567788899999999999999988643311 25678889999999999999999998887653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=8.6e-08 Score=94.11 Aligned_cols=166 Identities=13% Similarity=0.021 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhH-HHHH
Q 004791 202 NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSY-TNLI 280 (730)
Q Consensus 202 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li 280 (730)
+...+..+...+.+.|++++|...|+++.+..+ .+...+..+...+.+.|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 445677778888889999999999999888643 366778888889999999999999999887643 443332 2333
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCH
Q 004791 281 HGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP-NVHTYTVLIDCLCKENKV 359 (730)
Q Consensus 281 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~ 359 (730)
..+.+.++.++|.+.|++..... +.+...+..+...+...|++++|++.|.++++..+.. +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 34667788888888888887765 4567788888888889999999999998888875432 256788888888888888
Q ss_pred HHHHHHHHHHHH
Q 004791 360 DEASELLNRMLE 371 (730)
Q Consensus 360 ~~A~~~~~~~~~ 371 (730)
++|...|++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.3e-08 Score=95.80 Aligned_cols=183 Identities=10% Similarity=0.033 Sum_probs=106.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--CHHHHHHHHH
Q 004791 492 TLCKRGRVEEAQVLFDSLEKKGIK-----AGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDC---LP--NSYTYNALID 561 (730)
Q Consensus 492 ~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~li~ 561 (730)
.|...|++++|...|.+..+.... .-..+|+.+..+|.+.|++++|+..+++.++... .+ ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544332100 0123556666667777777777777776554210 11 1245666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGV---KP--TVYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKPD-VYTYTAFIQ 631 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~ 631 (730)
.|.. |++++|+..|++.++... .+ ...++..+...+...|++++|++.|++.++. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7766 888888888877764210 01 1356777778888888888888888877763 11111 225566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 004791 632 AYCSIGKLDEAEDLIVKMNREGIVPD------SVTYTLLICAYAHLGLIYSAFD 679 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~l~~~~~~~g~~~~A~~ 679 (730)
++...|++++|...|++.. . .|+ ......++.++ ..|+.+.+.+
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7777788888888888877 3 232 12344445544 4677665555
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-06 Score=84.51 Aligned_cols=232 Identities=10% Similarity=0.038 Sum_probs=159.3
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-C-ChhHH
Q 004791 461 EGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRG-RVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKE-G-KIDDA 537 (730)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A 537 (730)
.+..++|+++++.++..... +..+|+.--..+...| .+++++.+++.++...++ +..+|+.-..++.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 34456777777777775422 4555666666666667 488888888888877665 667777766666665 6 77888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------
Q 004791 538 HSLLERMLSDDCLPNSYTYNALIDGLYRERKVQ--------EALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD------ 603 (730)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~------ 603 (730)
+++++++++.+ +.|..+|+--...+.+.+.++ +++++++++++.. +-|...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 88888888765 556777766655555555555 8888888888765 4677888888777777775
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----CCCC
Q 004791 604 -FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL--------------------DEAEDLIVKMNREG-----IVPD 657 (730)
Q Consensus 604 -~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~m~~~g-----~~~~ 657 (730)
++++++.+++++...+. |...|+.+-..+.+.|+. .+..++..++...+ -.++
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 68888888888886544 777888777777776653 33344444443321 1356
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004791 658 SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAF 698 (730)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 698 (730)
...+..|+..|...|+.++|.++++.+.++ +.|-..-|+.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~ 341 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWE 341 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHH
Confidence 788889999999999999999999998653 5665555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-06 Score=85.26 Aligned_cols=164 Identities=12% Similarity=0.052 Sum_probs=122.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 004791 523 ALIDGYCKEGKIDDAHSLLERMLSDDC-LPNS----YTYNALIDGLYRERKVQEALLLVEKMTKMGVK-PT----VYTYT 592 (730)
Q Consensus 523 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-~~----~~~~~ 592 (730)
..+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999999887431 1221 12334666677788999999999999873222 23 34688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVS----L-GLKP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE----GIVPD-SVTY 661 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~ 661 (730)
.++..|...|++++|.+.|+++++ . +..+ ...+|..++.+|.+.|++++|.+.+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999884 1 1112 2347888999999999999999999988752 22222 6789
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHH
Q 004791 662 TLLICAYAHLG-LIYSAFDVLKRMFD 686 (730)
Q Consensus 662 ~~l~~~~~~~g-~~~~A~~~~~~m~~ 686 (730)
..++.+|.+.| .+++|.+.+++.+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999999 57999999998863
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.1e-07 Score=84.80 Aligned_cols=127 Identities=10% Similarity=-0.073 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVL 599 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 599 (730)
.+..+...+...|++++|+..+++.. .|+...+..+...+...|++++|+..+++.++.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455566666677777776666553 3456666666666666667777776666666543 345566666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKP---------------DVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..|++++|++.|+++.+..... ....+..+..+|...|++++|.+.++++.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666666666666643220 114556666666666666666666666665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-07 Score=77.73 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAY 668 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 668 (730)
..+...+..|.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|+..+++.++.+ +.+...|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 45566677777777777777777777765432 66677777777777777777777777777643 23466777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004791 669 AHLGLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 669 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
...|++++|++.|++.++. .|+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~~~ 115 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPSNE 115 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHCCCHHHHHHHHHHHHHH--CcCCH
Confidence 7777777777777777763 55443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=6.7e-07 Score=83.29 Aligned_cols=128 Identities=13% Similarity=-0.005 Sum_probs=91.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR 320 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 320 (730)
+..+...+...|++++|...|++... ++...|..+...+.+.|++++|.+.|++..+.+ +.+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 34455666777777777777777643 566777777777777788888888777776654 3456677777777778
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 321 VGRKSEALEFFNEMSARGCEP---------------NVHTYTVLIDCLCKENKVDEASELLNRMLEKG 373 (730)
Q Consensus 321 ~g~~~~A~~~~~~m~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 373 (730)
.|++++|++.|++..+..... ....+..+..++.+.|++++|...|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888887777653321 12567777778888888888888888877753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-07 Score=91.67 Aligned_cols=95 Identities=14% Similarity=-0.027 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-hh
Q 004791 310 TYTVVIFGLCRVGRKSEALEFFNEMSARGCEP-----NVHTYTVLIDCLCKENKVDEASELLNRMLEKG----LFPN-VV 379 (730)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~-~~ 379 (730)
++..+...|.. |++++|++.|++.+...... ...++..+...|.+.|++++|+..|++.++.. ..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34444444444 55555555554443321100 02344455555555555555555555554321 0000 12
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 380 TYNALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
.+..++..+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444455555555666655555555
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-06 Score=84.18 Aligned_cols=166 Identities=11% Similarity=0.045 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNS-----YTYNALIDGLYRERKVQEALLLVEKMTKMGV---KPT--VY 589 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~---~~~--~~ 589 (730)
.+...+..+...|++++|.+.+.+.++....... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667778889999999888887775422111 2234455666778899999999998875321 122 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---CCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVS---LGL-KP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG----IVP-DS 658 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~~-~~ 658 (730)
+|+.++..|...|++++|.+.++++.+ ... .+ ...++..++.+|...|++++|.+.+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788899999999999999999999873 211 11 12578899999999999999999999987531 111 16
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 004791 659 VTYTLLICAYAHLGLIYSA-FDVLKRMF 685 (730)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 685 (730)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 7889999999999999999 77788765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.69 E-value=6.9e-07 Score=79.24 Aligned_cols=129 Identities=9% Similarity=0.006 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 633 (730)
..+..+...+...|++++|...|++.++.. +.+..++..+..++...|++++|.+.+++.++... .+...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345666667777778888888777777654 44677777777888888888888888888777542 2567777888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 004791 634 CSIGKLDEAEDLIVKMNREGIVPDSVTYTLLI--CAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~ 685 (730)
...|++++|...++++.+.. +.+...+..+. ..+...|++++|++.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888887743 22455553333 33667788888888877654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.1e-06 Score=80.84 Aligned_cols=179 Identities=9% Similarity=-0.008 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNMVVP-NIYTFNTMINGCCKVG-NVGEAELYVSKIVQAGLSPDTFTYTSLILGY 248 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 248 (730)
++.+-..+.+.+..++|+.++++++.. .| +..+|+.-...+...| .+++++.+++.++...+ .+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 333333344444556677777777664 23 3345565555555556 36666666666666543 2555555555555
Q ss_pred Hhc-C-ChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 004791 249 CRN-K-DVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVD--------EALDLFRRMGEDDCRPTVRTYTVVIFGL 318 (730)
Q Consensus 249 ~~~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~li~~~ 318 (730)
.+. + ++++++++++.+.+.. +.|..+|+--.-.+.+.|.++ ++++.++++.+.+ +-|..+|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 444 4 5566666666665532 344555554444444444444 4555555554443 22444455444444
Q ss_pred HhcCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 004791 319 CRVGR-------KSEALEFFNEMSARGCEPNVHTYTVLIDCLCK 355 (730)
Q Consensus 319 ~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 355 (730)
.+.++ ++++++.+++++...+. |...|+.+-..+.+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKH 254 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 44443 34444444444443333 44444443333333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.3e-07 Score=75.75 Aligned_cols=108 Identities=11% Similarity=0.041 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 633 (730)
..+......|.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|++.+++.++.+.. +...|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345556666777777777777777776654 456677777777777777777777777777765433 566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 004791 634 CSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLI 665 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~ 665 (730)
...|++++|++.|++..+. .| +...+..|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence 7777777777777777763 34 344444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-06 Score=83.46 Aligned_cols=197 Identities=10% Similarity=-0.067 Sum_probs=133.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCC---------------
Q 004791 495 KRGRVEEAQVLFDSLEKKGIKAGEVIYTAL-------IDGYCKEGKIDDAHSLLERMLSDDCLPN--------------- 552 (730)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------- 552 (730)
..++...|.+.|.++.+..+. ....|..+ ...+.+.++..+++..+...+.. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 467777788888777777554 55666666 45555555555555555554441 111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--H
Q 004791 553 -------SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD--V 623 (730)
Q Consensus 553 -------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~ 623 (730)
......+...+...|++++|.++|+.+...+ |+......+...+.+.|++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 2234456667778888899988888877644 443366666677888899999999888665431 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004791 624 YTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD--SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFL 699 (730)
Q Consensus 624 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 699 (730)
..+..+..++...|++++|+..|++.......|. ...+...+.++.+.|+.++|...|+++... .|+...+..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 3677788888899999999999998875332243 446777788888999999999999999875 5664444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=80.72 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAY 668 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 668 (730)
..+..+...+.+.|++++|++.|++++...+. +...|..+..+|...|++++|+..|+++.+.. +.+...|..++.+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 34444555555555555555555555554322 44555555555555555555555555555532 11345555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004791 669 AHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 669 ~~~g~~~~A~~~~~~m~~ 686 (730)
...|++++|+..|++.++
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-07 Score=81.77 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
+...+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|++.|+++++..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 45678888899999999999999999999876 568899999999999999999999999999997544 6778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004791 632 AYCSIGKLDEAEDLIVKMNREGIVPDSV 659 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 659 (730)
+|...|++++|...|++..+. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999999984 57754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=7.4e-06 Score=80.57 Aligned_cols=163 Identities=13% Similarity=0.043 Sum_probs=121.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-cCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHH
Q 004791 489 FIDTLCKRGRVEEAQVLFDSLEKKGIK-AGE----VIYTALIDGYCKEGKIDDAHSLLERMLSDDCL-PN----SYTYNA 558 (730)
Q Consensus 489 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 558 (730)
.+..+...|++++|..++++..+.... ++. ..+..+...+...|++++|+..+++.+..... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677889999999999888775322 221 13345677777888999999999998874222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 004791 559 LIDGLYRERKVQEALLLVEKMTK----M-GVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKPD-VYTYT 627 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 627 (730)
+...|...|++++|...|+++.+ . +..+ ...++..++..|.+.|++++|++.+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998884 1 1122 2347788999999999999999999988863 21222 66889
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 004791 628 AFIQAYCSIGK-LDEAEDLIVKMNR 651 (730)
Q Consensus 628 ~l~~~~~~~g~-~~~A~~~~~~m~~ 651 (730)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 7999999998774
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-06 Score=82.83 Aligned_cols=188 Identities=10% Similarity=-0.073 Sum_probs=130.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCCCC---------------
Q 004791 180 KFHLVDEMKRVYLEMLDNMVVPNIYTFNTM-------INGCCKVGNVGEAELYVSKIVQAGLSPD--------------- 237 (730)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------- 237 (730)
+.++.+.|+..|.++.+.. +-....|+.+ ..++.+.++..+++..+.+.+.. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5688999999999998863 2245678777 56777777777777766666541 111
Q ss_pred -------HHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--h
Q 004791 238 -------TFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPT--V 308 (730)
Q Consensus 238 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~ 308 (730)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.|++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345667778888888888888887644 433366667778888888888888887665432 111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 309 RTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPN--VHTYTVLIDCLCKENKVDEASELLNRMLEKG 373 (730)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 373 (730)
..+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3667778888888888888888888774332243 3355667777888888888888888887753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-06 Score=78.12 Aligned_cols=130 Identities=13% Similarity=0.050 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEV 598 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 598 (730)
..+..+...+...|++++|...+++.+... +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777778888888888888877754 4467777778888888888888888888887754 45677788888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 004791 599 LKEGDFDHAHRLLDQMVSLGLKPDVYTYTA--FIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
...|++++|.+.++++.+.... +...+.. ++..+...|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888888875432 4445533 33346777888888888877643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.1e-07 Score=79.74 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=73.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 576 VEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIV 655 (730)
Q Consensus 576 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 655 (730)
++++++.. +.+...+..+...+...|++++|+..|++++...+. +...|..+..+|...|++++|+..++++.+.. +
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 44444432 234555666677777777777777777777765432 66677777777777777777777777777643 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 656 PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
.+...|..++.+|...|++++|++.|++.++.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 25667777777777777777777777777653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-05 Score=78.41 Aligned_cols=221 Identities=9% Similarity=-0.028 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC--
Q 004791 466 SAYKVLHLINESGLVPDQFTYSVFIDTLCKRGR----------VEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGK-- 533 (730)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-- 533 (730)
+|++++..+....+. +...|+.--..+...+. +++++.+++.+....++ +..+|+.-..++.+.|+
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCccc
Confidence 566666666654321 23333332222222222 56777888888777655 67777776666667663
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------
Q 004791 534 IDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERK-VQEALLLVEKMTKMGVKPTVYTYTILIEEVLKE----------- 601 (730)
Q Consensus 534 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------- 601 (730)
+++++.+++++++.+ +-|..+|+.-...+...|. ++++++.++++++.. +-|...|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccc
Confidence 788888888888866 5677777777777777777 588888888888765 45777777776666555
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 004791 602 ---GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI-----------GKLDEAEDLIVKMNREGIVPDS-VTYTLLIC 666 (730)
Q Consensus 602 ---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~ 666 (730)
+.++++++.+++++...+. |...|+.+-..+.+. +.++++++.++++.+ +.||. ..+..++.
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIIL 280 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHH
Confidence 4578888888888886544 777787666666555 468889999999988 44653 33322222
Q ss_pred H---HHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004791 667 A---YAHLGLIYSAFDVLKRMFDAGCEPSHHT 695 (730)
Q Consensus 667 ~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 695 (730)
. ....|..+++..++.++.+ +.|...-
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred HHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 1 2235778888888888876 3565443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-07 Score=83.01 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 004791 566 ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQA-YCSIGKL--DEA 642 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~A 642 (730)
.|++++|...+++.++.. +.+...+..+...|...|++++|...|+++++.... +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 455555555555555433 344555555566666666666666666665554322 44555555555 5555665 666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 643 EDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
...++++.+.. +.+...+..++..|...|++++|...++++++.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666665532 223555556666666666666666666666553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-06 Score=71.99 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS 635 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 635 (730)
+..+...+...|++++|.++++++.+.. +.+..++..+...+...|++++|..+++++.+... .+...+..+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHH
Confidence 3333344444444444444444443322 22333344444444444444444444444443221 133334444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 004791 636 IGKLDEAEDLIVKMNR 651 (730)
Q Consensus 636 ~g~~~~A~~~~~~m~~ 651 (730)
.|++++|...++++.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=5e-07 Score=83.35 Aligned_cols=156 Identities=14% Similarity=-0.022 Sum_probs=90.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCCH
Q 004791 530 KEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK----MGVK-PTVYTYTILIEEVLKEGDF 604 (730)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~-~~~~~~~~l~~~~~~~g~~ 604 (730)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++..+ .+.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35566666664433322 1122345566666666666666666666666554 1111 1234566666777777777
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC
Q 004791 605 DHAHRLLDQMVSL----GLKP--DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGI-VPD----SVTYTLLICAYAHLGL 673 (730)
Q Consensus 605 ~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~~g~ 673 (730)
++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+..- ..+ ..++..++..+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777766652 1111 233566777777778888888887777663210 011 2345677777888888
Q ss_pred HHHHHHHHHHHHH
Q 004791 674 IYSAFDVLKRMFD 686 (730)
Q Consensus 674 ~~~A~~~~~~m~~ 686 (730)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877753
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-07 Score=90.81 Aligned_cols=193 Identities=11% Similarity=0.034 Sum_probs=106.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...+..+...+...|++++|...|+++++..+. +...|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345555666666777777777777777665433 56667777777777777777777777777654 4456667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 642 (730)
+...|++++|...|++..+.. +.+...+...+....+ ..++.. +..........+......+... ..|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 777777777777777766532 0010011111111111 111111 1112222233344444444332 25777888
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 004791 643 EDLIVKMNREGIVPDS-VTYTLLICAYAHL-GLIYSAFDVLKRMFD 686 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 686 (730)
++.+++..+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8777777763 3543 3333443344443 567777777776653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-06 Score=71.99 Aligned_cols=116 Identities=19% Similarity=0.246 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 518 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566667777777777777777777777654 4456677777777777788888888887777654 4566777777778
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI 636 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 636 (730)
+...|++++|...++++.+..+. +...+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhc
Confidence 88888888888888887775432 455555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-06 Score=74.46 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|++.++++++.... +...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHH
Confidence 34444444444444444444444444332 223344444444444444444444444444443211 3334444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004791 635 SIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~ 651 (730)
..|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-06 Score=73.30 Aligned_cols=115 Identities=13% Similarity=0.041 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 34444444444555555555555444432 223444444445555555555555555554443211 3444444555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 635 SIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLG 672 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 672 (730)
..|++++|...+++..+.. +.+...+..+..++...|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 5555555555555554432 123444444444444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.3e-07 Score=82.56 Aligned_cols=121 Identities=11% Similarity=0.130 Sum_probs=81.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH--H
Q 004791 529 CKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE-VLKEGDF--D 605 (730)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 605 (730)
...|++++|+..+++.++.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34566777777777766654 4566677777777777777777777777777654 3456666667776 6677777 7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
+|...++++++..+. +...+..+..+|...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777775432 5667777777777788888888888877774
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.54 E-value=3.5e-07 Score=89.35 Aligned_cols=94 Identities=14% Similarity=0.020 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR 320 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 320 (730)
+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.+ +.+...+..+..++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444321 1234445555555555555555555555554442 2234455555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 004791 321 VGRKSEALEFFNEMSA 336 (730)
Q Consensus 321 ~g~~~~A~~~~~~m~~ 336 (730)
.|++++|+..|++..+
T Consensus 85 ~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 85 MESYDEAIANLQRAYS 100 (281)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-06 Score=73.45 Aligned_cols=118 Identities=10% Similarity=0.050 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
+...+..+...+.+.|++++|+..+++.++.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45667777778888888888888888887764 4467777888888888888888888888887754 456777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
++...|++++|.+.|++..+.... +...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 888888888888888888775322 4456666666666555
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.5e-07 Score=81.44 Aligned_cols=156 Identities=10% Similarity=-0.030 Sum_probs=96.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCH
Q 004791 495 KRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSD----DC-LPNSYTYNALIDGLYRERKV 569 (730)
Q Consensus 495 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~~~~ 569 (730)
..|++++|.+.++.+.. .+.....++..+...+...|++++|...+++.+.. +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35666666664443332 22224556666666777777777777777766551 11 12234566677777778888
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCC--CHHHHHHHHHHHHhcCC
Q 004791 570 QEALLLVEKMTKM----GVKP--TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG---LKP--DVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 570 ~~A~~~~~~m~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p--~~~~~~~l~~~~~~~g~ 638 (730)
++|...+++..+. +-.+ ....+..+...+...|++++|.+.+++..+.. ..+ -..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888877776642 1011 23456677778888888888888888776421 011 12345777888888899
Q ss_pred HHHHHHHHHHHHH
Q 004791 639 LDEAEDLIVKMNR 651 (730)
Q Consensus 639 ~~~A~~~~~~m~~ 651 (730)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-06 Score=87.65 Aligned_cols=130 Identities=15% Similarity=0.054 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004791 553 SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT---------------VYTYTILIEEVLKEGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 553 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 617 (730)
...+..+...+.+.|++++|+..|++.++.. +.+ ...|..+..+|.+.|++++|++.++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3345555555555566666666665555533 112 467777888888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 004791 618 GLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSA-FDVLKRMF 685 (730)
Q Consensus 618 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 685 (730)
.+. +...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++...|+.++| ...|++|.
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 67778888888888888888888888888743 23567777888888888888877 44666664
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.1e-07 Score=79.80 Aligned_cols=109 Identities=11% Similarity=0.017 Sum_probs=77.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004791 541 LERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK 620 (730)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 620 (730)
+++++... +.+...+..+...+...|++++|+..|+++++.. +.+...|..+..++...|++++|++.|++++...+.
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 44444433 2344566667777777888888888888777654 456777777777888888888888888887775433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 621 PDVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 621 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
+...+..+..+|...|++++|.+.|++..+.
T Consensus 88 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 88 -EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667777778888888888888888887763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-06 Score=73.26 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG--IVPD----SVTYT 662 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~----~~~~~ 662 (730)
..+..++..+.+.|++++|++.|+++++..+. +...|..+..+|...|++++|++.+++.++.+ ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34566777777778888888888777775433 56677777788888888888888887776521 0111 24667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 663 LLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
.++.++...|++++|++.|++.++. .||.....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 7777888888888888888887763 45655443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.4e-06 Score=80.18 Aligned_cols=166 Identities=13% Similarity=0.017 Sum_probs=117.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--HHH
Q 004791 486 YSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAG-----EVIYTALIDGYCKEGKIDDAHSLLERMLSDDC---LPN--SYT 555 (730)
Q Consensus 486 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~ 555 (730)
+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|+..+++.++... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33445566677777777777777666432211 12234456667788899999999988875321 112 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---CC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-CHH
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTK---MG-VKP--TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG----LKP-DVY 624 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~---~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~ 624 (730)
++.+...|...|++++|...++++.+ .. ..+ ...++..++..|...|++++|++.+++.++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 88888999999999999999998873 11 111 12578889999999999999999999887631 111 166
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEA-EDLIVKMNR 651 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 651 (730)
+|..+..+|.+.|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788999999999999999 777887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-06 Score=71.51 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICA 667 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 667 (730)
...+..+...+.+.|++++|++.|++.++..+. +...|..+..++.+.|++++|+..+++..+.. +.+...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345566667777777777777777777775432 56777777777778888888888888777743 2356777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 004791 668 YAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 668 ~~~~g~~~~A~~~~~~m~~~ 687 (730)
+...|++++|+..|++.++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888777653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-06 Score=72.32 Aligned_cols=119 Identities=8% Similarity=-0.037 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 518 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 4456666777777777777777777777654 4466677777777777888888888887777654 4456777777778
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL 639 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 639 (730)
+...|++++|.+.|++..+.... +...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 88888888888888887775432 566677777777666653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.1e-07 Score=85.68 Aligned_cols=129 Identities=14% Similarity=0.070 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPT----------------VYTYTILIEEVLKEGDFDHAHRLLDQMVSLG 618 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 618 (730)
.+..+...+...|++++|+..|++.++.. +.+ ...+..+..++...|++++|+..++++++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 44455555566666666666666665532 111 2566677777777777777777777777754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 004791 619 LKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAF-DVLKRMFD 686 (730)
Q Consensus 619 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 686 (730)
. .+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|+.+++. ..++.|..
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 256677777777777788888888777777643 225666777777777666666666 45555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.3e-05 Score=73.74 Aligned_cols=193 Identities=10% Similarity=0.028 Sum_probs=153.1
Q ss_pred HhcCCH-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 494 CKRGRV-EEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGK----------IDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 494 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
.+.|.+ ++|+.+++.++..++. +..+|+.--..+...+. +++++.+++.++..+ +.+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345555 4899999999988765 56666665444444333 678999999999876 6788889888888
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 004791 563 LYRER--KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD-FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI--- 636 (730)
Q Consensus 563 ~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 636 (730)
+.+.+ .+++++.+++++++.. +-|...|+.-...+...|. ++++++.++++++..+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 87777 4899999999999876 6788999988888888898 69999999999997655 888898887777665
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCH
Q 004791 637 -----------GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHL-----------GLIYSAFDVLKRMFDAGCEPSH 693 (730)
Q Consensus 637 -----------g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~ 693 (730)
+.++++++.+++..... +-|...|+.+-..+.+. +.++++++.++++++. .||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 56899999999999854 34788888777666665 5689999999999974 6765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6.1e-07 Score=77.36 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLIC 666 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 666 (730)
+...+..+...+...|++++|+..|++++..++. +...|..+..+|...|++++|+..+++..+.+ +.+...|..++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3444555666677777777777777777765432 66667777777777777777777777777643 234666677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 004791 667 AYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 667 ~~~~~g~~~~A~~~~~~m~~~ 687 (730)
+|...|++++|.+.|++.++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.6e-06 Score=85.49 Aligned_cols=130 Identities=16% Similarity=0.044 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN---------------SYTYNALIDGLYRERKVQEALLLVEKMTKMG 583 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 583 (730)
..+..+...|.+.|++++|+..|++.+... +.+ ...|..+..+|.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345555555566666666666666655543 111 4677888888888888888888888888765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 004791 584 VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA-EDLIVKMNR 651 (730)
Q Consensus 584 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 651 (730)
+.+...|..+..+|...|++++|+..|+++++..+. +...+..+..++.+.|+.++| ..++++|..
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788888888888899999999999888886433 677888888888888888888 446666653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.3e-06 Score=70.13 Aligned_cols=96 Identities=11% Similarity=0.012 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 633 (730)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|++.+++.++..+. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 445556666677777777777777776654 446677777777777777777777777777775432 566777777777
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004791 634 CSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~ 651 (730)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777777766
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.5e-06 Score=70.83 Aligned_cols=105 Identities=13% Similarity=0.168 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK--PD----VYTYTA 628 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~ 628 (730)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++.++.... ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44556666666666666666666666643 345666666666777777777777777666653211 11 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004791 629 FIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYT 662 (730)
Q Consensus 629 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 662 (730)
+..++...|++++|++.|++.++ ..||.....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 67777777777777777777766 345655443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-05 Score=68.84 Aligned_cols=99 Identities=10% Similarity=0.016 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 586 PTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLI 665 (730)
Q Consensus 586 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 665 (730)
.+...+..+...+...|++++|...|++.++.... +...|..+..++...|++++|...+++..+.+ +.+...|..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 45666777777777777777777777777765432 56677777777777777777777777777643 23566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004791 666 CAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 666 ~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.+|...|++++|+..|++.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777788777777777764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-05 Score=66.46 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 669 (730)
.+..++..+...|++++|.+.+++...... .+...+..++.++...|++++|...+++..+.. +.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 334444444445555555555554444321 134444444455555555555555555544432 123444445555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004791 670 HLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 670 ~~g~~~~A~~~~~~m~~ 686 (730)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=4.2e-07 Score=83.63 Aligned_cols=131 Identities=13% Similarity=0.043 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 519 VIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPN----------------SYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 519 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
..+..+...+.+.|++++|+..|++.+... +.+ ...+..+..++.+.|++++|+..+++.++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345555666666677777777776666542 111 267777888888889999999999888876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 004791 583 GVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE-DLIVKMNRE 652 (730)
Q Consensus 583 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 652 (730)
. +.+...+..+..++...|++++|++.|++.++..+. +...+..+..++...|+.+++. ..+..|...
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4 557788888888999999999999999998876433 6777888888887777777766 555555543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-06 Score=75.25 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
+...+..+...+.+.|++++|...|++++... +.+...|..+..++...|++++|+..|+++++.++. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 33455556666777777788877777777654 456777777777777788888888888877776433 5566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 004791 632 AYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~ 651 (730)
+|...|++++|.+.|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 78888888888888877776
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.4e-06 Score=73.35 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICA 667 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 667 (730)
...+..+...+...|++++|++.|++.++.... +...|..+..+|...|++++|+..+++.++.. +.+...|..++.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334444555555555555555555555554322 44455555555555555555555555555532 1235555555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004791 668 YAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 668 ~~~~g~~~~A~~~~~~m~~ 686 (730)
|...|++++|++.|++.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.6e-05 Score=65.27 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAY 633 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 633 (730)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 344455555555666666666666555533 334555555666666666666666666666554322 455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 004791 634 CSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~ 652 (730)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666666653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=7.5e-06 Score=69.73 Aligned_cols=99 Identities=17% Similarity=0.048 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 551 PNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFI 630 (730)
Q Consensus 551 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 630 (730)
.+...+..+...+...|++++|...|++.++.. +.+...+..+..++...|++++|...++++++.... +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 455666777777777777777777777776654 445667777777777777777777777777775433 566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.++...|++++|...++++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777888888777777765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.6e-06 Score=67.88 Aligned_cols=98 Identities=12% Similarity=0.017 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP--DSVTYTLLI 665 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~ 665 (730)
...+..+...+...|++++|...++++++.... +...|..+..++...|++++|.+.+++..+.. +. +...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344555666666677777777777776665322 55666677777777777777777777777643 22 466677777
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHc
Q 004791 666 CAYAHL-GLIYSAFDVLKRMFDA 687 (730)
Q Consensus 666 ~~~~~~-g~~~~A~~~~~~m~~~ 687 (730)
.++... |++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 777777 7777777777777654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=9e-06 Score=68.34 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGI--VPD----SVTYT 662 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 662 (730)
..+..++..+...|++++|...|+++.+... .+...+..++.++...|++++|...++++.+... .++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3455556666666666666666666665432 2555666666666666777777776666665320 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004791 663 LLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFL 699 (730)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 699 (730)
.++.++...|++++|.+.|+++.+. .|+......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 6667777777777777777777654 3444444333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5.5e-06 Score=69.68 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CC----HHHHH
Q 004791 554 YTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK--PD----VYTYT 627 (730)
Q Consensus 554 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~ 627 (730)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666677777777776666543 345666666677777777777777777776654211 11 55667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICA 667 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 667 (730)
.++.++...|++++|.+.++++.+. .|+...+..+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 7777777777777777777777763 3565555544443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=7e-06 Score=68.21 Aligned_cols=94 Identities=10% Similarity=-0.087 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH 670 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 670 (730)
+..+...+.+.|++++|+..|+++++..+. +...|..+..++...|++++|+..+++..+.. +.+...+..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344556667777777777777777775432 66677777777777777777777777777743 2256677777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 004791 671 LGLIYSAFDVLKRMFD 686 (730)
Q Consensus 671 ~g~~~~A~~~~~~m~~ 686 (730)
.|++++|+..+++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.2e-05 Score=66.66 Aligned_cols=98 Identities=19% Similarity=0.090 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD----VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYT 662 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 662 (730)
+...+..+...+...|++++|.+.|++.++. .|+ ...|..+..+|...|++++|+..+++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4555555666666666666666666666653 233 4556666666666677777777666666532 22456666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 663 LLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 663 ~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
.++.++...|++++|...|++.++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666667777777777777766653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1e-05 Score=71.48 Aligned_cols=99 Identities=9% Similarity=0.015 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|+++++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34456666666677777777777777776654 346667777777777777777777777777765432 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 004791 632 AYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 632 ~~~~~g~~~~A~~~~~~m~~~ 652 (730)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777763
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.3e-05 Score=66.56 Aligned_cols=98 Identities=17% Similarity=0.059 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYT 627 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 627 (730)
+...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|++.+++.++.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 45566666666667777777777777766643 43 456666677777777777777777777665322 566677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
.+..++...|++++|...+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777777777777763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.4e-05 Score=79.14 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHH
Q 004791 565 RERKVQEALLLVEKMTK----MGVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSL--GL--KP-DVYTYTAFIQAYC 634 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~p-~~~~~~~l~~~~~ 634 (730)
..|++++|..++++... .+..+ -..++..++..+...|++++|..+++++... +. .+ ...++..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34555555555554432 11111 1334455555555555555555555555431 11 11 1334555555555
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 635 SIGKLDEAEDLIVKMNRE--GIVPD----SVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 635 ~~g~~~~A~~~~~~m~~~--g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
..|++++|..++++.... .+..+ ...+..++..+...|++++|...|.+..
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566666666555554421 01111 2334444455555556666555555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=9.7e-06 Score=67.33 Aligned_cols=93 Identities=13% Similarity=-0.039 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004791 557 NALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI 636 (730)
Q Consensus 557 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 636 (730)
..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|+++++..+. +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344455556666666666666666543 345666666666666666666666666666665332 455666666666666
Q ss_pred CCHHHHHHHHHHHHH
Q 004791 637 GKLDEAEDLIVKMNR 651 (730)
Q Consensus 637 g~~~~A~~~~~~m~~ 651 (730)
|++++|+..+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.6e-05 Score=65.49 Aligned_cols=93 Identities=16% Similarity=0.095 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLGLKPDV---YTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD---SVTYTLLIC 666 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~ 666 (730)
.+...+...|++++|.+.|+++++..+. +. ..+..++.++...|++++|...++++.+.. +.+ ...+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3455666777777777777777664322 22 456667777777777777777777777643 122 556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 004791 667 AYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 667 ~~~~~g~~~~A~~~~~~m~~~ 687 (730)
++...|++++|...|+++++.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=64.89 Aligned_cols=94 Identities=16% Similarity=0.096 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAY 633 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~ 633 (730)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++.++.. +. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3334444444444444444444444432 2334444444444555555555555555554432 11 244444555555
Q ss_pred Hhc-CCHHHHHHHHHHHHH
Q 004791 634 CSI-GKLDEAEDLIVKMNR 651 (730)
Q Consensus 634 ~~~-g~~~~A~~~~~~m~~ 651 (730)
... |++++|.+.+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 555 555555555555544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-05 Score=69.90 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 004791 623 VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHH-TYAFLI 700 (730)
Q Consensus 623 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~ 700 (730)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..++.+|...|++++|+..|++.++. .|+.. .....+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l 138 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 4577888888888889999998888888753 335788888888888899999999988888874 56554 434333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-05 Score=82.67 Aligned_cols=145 Identities=14% Similarity=0.043 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 517 GEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIE 596 (730)
Q Consensus 517 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 596 (730)
....+..+...|.+.|++++|+..|++.++.. |+...+ ..+...+ .. +.....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~----~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA----SE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH----HH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH----HH----HHHHHHHHHHHH
Confidence 34556666777777777777777777766542 111000 0000000 00 001345566666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 004791 597 EVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIY 675 (730)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~ 675 (730)
+|.+.|++++|+..++++++.... +...|..+..+|...|++++|+..|+++.+. .| +...+..+..++.+.|+.+
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHH
Confidence 666666777776666666665422 5666666666677777777777777776663 33 3455666666666666666
Q ss_pred HHHH-HHHHHH
Q 004791 676 SAFD-VLKRMF 685 (730)
Q Consensus 676 ~A~~-~~~~m~ 685 (730)
++.+ .+++|.
T Consensus 403 ~a~~~~~~~~f 413 (457)
T 1kt0_A 403 ERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 5553 344443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=8.7e-05 Score=77.53 Aligned_cols=197 Identities=8% Similarity=-0.038 Sum_probs=95.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-CC
Q 004791 420 ICGFCKRKNVHRAMSLLNELLEQNLSPTL----------------ITYNSLIYGQCREGHLDSAYKVLHLINESGLV-PD 482 (730)
Q Consensus 420 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 482 (730)
...+.+.|++++|++.|.++++....... ..+..++..|...|++++|.+.+..+...-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44566778888888888888775422111 12455666666666666666666654432101 11
Q ss_pred HH----hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--C---
Q 004791 483 QF----TYSVFIDTLCKRGRVEEAQVLFDSLEKK----GIKA-GEVIYTALIDGYCKEGKIDDAHSLLERMLSD--D--- 548 (730)
Q Consensus 483 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~--- 548 (730)
.. ..+.+...+...|+.++|..+++..... +..+ -..++..+...|...|++++|..+++++... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1111222222345566666665554431 1111 1234455555555666666666555554431 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 549 CLPNSYTYNALIDGLYRERKVQEALLLVEKMTK----MGVKPT--VYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 549 ~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
.+....++..++..|...|++++|..++++... .+.++. ...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 011123455555555555555555555555442 111111 12334444444555555555555555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0001 Score=79.12 Aligned_cols=115 Identities=8% Similarity=0.102 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 004791 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG--DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG-KLDEAEDL 645 (730)
Q Consensus 569 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~ 645 (730)
+++++++++++++.. +.+..+|..-...+.+.| ++++++++++++++.+.+ +...|+....++.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 455555555555433 344555555555555555 445555555555554433 4555555555555555 55555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHH
Q 004791 646 IVKMNREGIVPDSVTYTLLICAYAHL--------------GLIYSAFDVLKRMFD 686 (730)
Q Consensus 646 ~~~m~~~g~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~m~~ 686 (730)
++++.+.. +-|..+|+.....+.+. +.++++++++++.+.
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 55555533 22455555555444442 345556666655554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.13 E-value=8.2e-05 Score=63.66 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKP------D-----VYTYTAFIQAYCSIGKLDEAEDLIVKMNRE-----GI 654 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~ 654 (730)
+......+.+.|++++|++.|++.++..+.. + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555666667777777776666643220 2 237888888888888888888888888873 01
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 004791 655 VPD-SVTY----TLLICAYAHLGLIYSAFDVLKRMFD-----AGCEPSHHTYA 697 (730)
Q Consensus 655 ~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 697 (730)
.|+ ...| ...+.++...|++++|+..|++.++ .|+.+......
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 564 5677 7888888888888888888888863 35555444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=8.1e-05 Score=79.96 Aligned_cols=173 Identities=8% Similarity=-0.035 Sum_probs=145.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004791 496 RGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGK----------IDDAHSLLERMLSDDCLPNSYTYNALIDGLYR 565 (730)
Q Consensus 496 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 565 (730)
....++|++.+++++..++. +..+|+.-..++.+.|+ ++++++.++++++.+ +.+..+|+.-...+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34457889999999998766 77788877777777777 899999999999876 6788899988888889
Q ss_pred cC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 004791 566 ER--KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG-DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI------ 636 (730)
Q Consensus 566 ~~--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------ 636 (730)
.+ ++++++++++++++.. +-+...|+.-...+.+.| .++++++.++++++..+. |...|+....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 99 7799999999999976 568999999999999999 899999999999987655 888999888887763
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 637 --------GKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGL 673 (730)
Q Consensus 637 --------g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 673 (730)
+++++++++++++.... +-|...|..+...+.+.|+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 56899999999999854 3368888888877777665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.7e-05 Score=69.49 Aligned_cols=132 Identities=15% Similarity=0.144 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-CHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGV-KPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVSLG----LKP-DVY 624 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~ 624 (730)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|.+.+++..+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555555666666655555543210 011 1355666667777777777777777666521 000 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 625 TYTAFIQAYCSIGKLDEAEDLIVKMNRE----GIVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 625 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
.+..+..++...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777788888888888888877642 1111 145677788888888999999888888764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.08 E-value=8.6e-06 Score=85.95 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=73.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
.+.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|++.++++++.... +...|..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3455667777777777766643 345666777777777777777777777777765432 56667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 004791 642 AEDLIVKMNREGIVPDSVTYTLLICA--YAHLGLIYSAFDVLK 682 (730)
Q Consensus 642 A~~~~~~m~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 682 (730)
|.+.++++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777776632 1133444445444 666677777777766
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.6e-05 Score=78.05 Aligned_cols=140 Identities=11% Similarity=-0.008 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 518 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
...+..+...+.+.|++++|+..|++.++.. +... ..... ++..+.. +.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~-------~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAED-------ADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCH-------HHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccCh-------HHHHHHH-HHHHHHHHHHHHH
Confidence 4456677777777788888877777766521 0000 00011 1111111 2234566666777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSA 677 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A 677 (730)
|.+.|++++|++.++++++.... +...|..+..+|...|++++|++.|+++.+.. +.+...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777765422 56667777777777777777777777777632 22455666666666666666555
Q ss_pred HH
Q 004791 678 FD 679 (730)
Q Consensus 678 ~~ 679 (730)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00012 Score=61.29 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=58.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTV---YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD---VYTYTAFIQA 632 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~ 632 (730)
+...+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|...|+++++..+. + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 4445556666777777766666533 1222 45566666777777777777777777664322 2 4556666777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 004791 633 YCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 633 ~~~~g~~~~A~~~~~~m~~~ 652 (730)
+...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.04 E-value=3.7e-05 Score=80.76 Aligned_cols=146 Identities=9% Similarity=-0.008 Sum_probs=90.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004791 482 DQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALID 561 (730)
Q Consensus 482 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 561 (730)
....+..+...+.+.|++++|...|+++++..+.... . ..+... +.. +.....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~-~------------~~~~~~----~~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG-L------------SEKESK----ASE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-C------------CHHHHH----HHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc-C------------ChHHHH----HHH----HHHHHHHHHHHH
Confidence 3567888889999999999999999999886433110 0 000000 000 012345566666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE 641 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 641 (730)
+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++..+. +...+..+..++.+.|+.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777776654 445666777777777777777777777777765322 44566667777777776666
Q ss_pred HHH-HHHHHH
Q 004791 642 AED-LIVKMN 650 (730)
Q Consensus 642 A~~-~~~~m~ 650 (730)
|.+ ++++|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 553 344443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.03 E-value=5e-05 Score=66.86 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
+...|..+..+|.+.|++++|+..++++++.++. +...|..++.+|...|++++|...|++..+. .|+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~ 129 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA 129 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC
Confidence 3467777888888888888888888888886533 6778888888888888888888888888874 454
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.8e-05 Score=68.13 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDC-LPN----SYTYNALIDGLYRERKVQEALLLVEKMTKM----GVKP-TVY 589 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~-~~~ 589 (730)
++..+...+...|++++|+..+++.++... .++ ..++..+...+...|++++|...+++..+. +-++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555555566666666666655543210 011 135556666666777777777777666542 1001 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSL----GLKP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.+..+...+...|++++|.+.+++.++. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777777788888888887777652 1111 234567777888888888888888888765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=9.7e-06 Score=66.89 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=50.1
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 601 EGDFDHAHRLLDQMVSLGL--KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAF 678 (730)
Q Consensus 601 ~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 678 (730)
.|++++|+..|+++++.+. +.+...+..+..+|...|++++|+..+++..+.. +.+...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666665421 1134456666666666677777777776666643 224566666666666677777777
Q ss_pred HHHHHHHHc
Q 004791 679 DVLKRMFDA 687 (730)
Q Consensus 679 ~~~~~m~~~ 687 (730)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 766666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=1e-05 Score=66.74 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 566 ERKVQEALLLVEKMTKMG--VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 643 (730)
.|++++|+..|++.++.+ -+.+...+..+..+|...|++++|++.|+++++..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777776643 1234556666777777777777777777777765433 5666777777777777777777
Q ss_pred HHHHHHHHC
Q 004791 644 DLIVKMNRE 652 (730)
Q Consensus 644 ~~~~~m~~~ 652 (730)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777663
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.00 E-value=5.8e-05 Score=76.58 Aligned_cols=140 Identities=9% Similarity=-0.058 Sum_probs=94.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...+..+...+.+.|++++|+..|+++++.-. .. ...... ++..... +.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~~----------~~~~~~-------~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--GS----------RAAAED-------ADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HH----------HHHSCH-------HHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cC----------ccccCh-------HHHHHHH-HHHHHHHHHHHHH
Confidence 55678888899999999999999999886310 00 000011 1111111 1235567777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 642 (730)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|++.|+++++.... +...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888887754 456777778888888888888888888888775432 566677777777777766666
Q ss_pred HH
Q 004791 643 ED 644 (730)
Q Consensus 643 ~~ 644 (730)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-05 Score=83.92 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=57.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHA 607 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 607 (730)
+.+.|++++|++.+++.++.. +.+..+|..+..+|.+.|++++|++.+++.++.. +.+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555443 3344555555555555555555555555555543 33455555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 004791 608 HRLLDQMVSLGLKPDVYTYTAFIQA--YCSIGKLDEAEDLIV 647 (730)
Q Consensus 608 ~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 647 (730)
++.|+++++.... +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555553221 22233333333 455555555555555
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00021 Score=60.65 Aligned_cols=110 Identities=12% Similarity=0.009 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004791 568 KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS----IGKLDEAE 643 (730)
Q Consensus 568 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 643 (730)
++++|++.|++..+.| .++.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 33332 5555555556666666666666643 45556666666665 56667777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 004791 644 DLIVKMNREGIVPDSVTYTLLICAYAH----LGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 644 ~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 688 (730)
++|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777666654 45566666666666 666777777777666654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00012 Score=62.73 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC
Q 004791 557 NALIDGLYRERKVQEALLLVEKMTKMGVK------PT-----VYTYTILIEEVLKEGDFDHAHRLLDQMVSL-----GLK 620 (730)
Q Consensus 557 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~------~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 620 (730)
......+.+.|++++|+..|++.++.... .+ ...|..+..++.+.|++++|+..+++.++. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34444455566666666666666553211 02 237888888888888888888888888875 113
Q ss_pred C-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 621 P-DVYTY----TAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 621 p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
| +...| .....++...|++++|+..|++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 55677 8899999999999999999999886
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.5e-05 Score=78.31 Aligned_cols=148 Identities=17% Similarity=0.110 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 518 EVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEE 597 (730)
Q Consensus 518 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 597 (730)
...+..+...+.+.|++++|+..|++.+... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4556677777778888888888888877643 43321 122333333332221 1367788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcCCHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICA-YAHLGLIY 675 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~-~~~~g~~~ 675 (730)
|.+.|++++|+..++++++.... +...|..+..+|...|++++|...|+++.+. .| +...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998886432 6778888999999999999999999988763 35 45555555555 34456777
Q ss_pred HHHHHHHHHHHc
Q 004791 676 SAFDVLKRMFDA 687 (730)
Q Consensus 676 ~A~~~~~~m~~~ 687 (730)
++...|++|+..
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888888888753
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.8e-05 Score=77.02 Aligned_cols=149 Identities=10% Similarity=-0.006 Sum_probs=85.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
...+..+...+.+.|++++|...|++.+.... +.. .+...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 45677778888899999999999999987642 222 1233444444443221 1367778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQA-YCSIGKLDE 641 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~ 641 (730)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++.... +...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999888765 457788888899999999999999999988765322 44455555555 234566778
Q ss_pred HHHHHHHHHHC
Q 004791 642 AEDLIVKMNRE 652 (730)
Q Consensus 642 A~~~~~~m~~~ 652 (730)
+..+|++|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 88888888763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=4e-05 Score=65.41 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 004791 602 GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK----------LDEAEDLIVKMNREGIVP-DSVTYTLLICAYAH 670 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~ 670 (730)
+.+++|++.+++.++..+. +...|..+..++...|+ +++|+..|++.++. .| +..+|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHH
Confidence 3344444444444443322 44444444444444433 34666666666552 33 35555566666655
Q ss_pred c-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 671 L-----------GLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 671 ~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
. |++++|++.|++.++ +.|+...|..-+...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4 366777777777665 366666665554433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00018 Score=75.21 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCC
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVS-----LGLK-P-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNR-----EGIVP 656 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~ 656 (730)
.+++.|+..|...|++++|+.++++.++ .|.. | ...+++.|...|..+|++++|..++++..+ .| |
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG--~ 429 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG--P 429 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--T
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC--C
Confidence 4455555566666666666666655553 1211 1 233566667777777777777777766553 23 2
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 657 D----SVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 657 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
| ..+...+..++...|++++|..+|+++++
T Consensus 430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 430 SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33345555666667777777777777764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00092 Score=56.66 Aligned_cols=110 Identities=12% Similarity=0.012 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 004791 533 KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK----EGDFDHAH 608 (730)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 608 (730)
++++|+.+|++..+.+ .++.. +...|...+.+++|++.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666665 22222 5555555566666777777766653 45566666666666 66777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004791 609 RLLDQMVSLGLKPDVYTYTAFIQAYCS----IGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 609 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 653 (730)
+.|++..+.| +...+..|...|.. .++.++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777777654 45566667777766 677777777777777765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=6.6e-05 Score=64.10 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=65.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 565 RERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD----------FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
+.+.+++|++.+++.++.. +.+...|..+..++...++ +++|+..|++.++.++. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445666666666666654 4466666666666666554 45888888888876543 6677888888887
Q ss_pred hcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 635 SIG-----------KLDEAEDLIVKMNREGIVPDSVTYTLLI 665 (730)
Q Consensus 635 ~~g-----------~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 665 (730)
..| ++++|++.|++.++ +.|+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 664 88999999999988 567765554433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.1e-05 Score=63.96 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..+..+...+...|++++|++.|++.++..+. +...|..+..++...|++++|++.+++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444455555555555555555555543221 444555555555555555555555555554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00019 Score=75.07 Aligned_cols=124 Identities=13% Similarity=0.031 Sum_probs=74.6
Q ss_pred HHhcCChhHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCC-CHHHHHH
Q 004791 528 YCKEGKIDDAHSLLERMLSD-----D-CLP-NSYTYNALIDGLYRERKVQEALLLVEKMTK-----MG-VKP-TVYTYTI 593 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~-----~-~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~-~~~-~~~~~~~ 593 (730)
+...|++++|+.++++.++. | -.| -..+++.|...|...|++++|..++++.++ .| -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34456666666666555431 1 011 234566666777777777777777666553 22 012 2355677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVS-----LGLK-P-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|...|...|++++|+.+++++++ .|.. | ...+.+.+..++...|++++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777765 3322 1 133445666677777888888888888765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00061 Score=52.54 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAY 668 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 668 (730)
..+..+...+...|++++|+..+++.++.... +...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34444555555555555555555555543221 44455555555555555555555555555432 12344444444444
Q ss_pred H
Q 004791 669 A 669 (730)
Q Consensus 669 ~ 669 (730)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00043 Score=56.47 Aligned_cols=77 Identities=14% Similarity=0.062 Sum_probs=39.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 607 AHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 607 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
|++.|+++++..+. +...+..+..+|...|++++|+..+++..+.. +.+...|..++.+|...|++++|...|++.+
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444554443221 44455555555555555555555555555432 1234455555555555555555555555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00033 Score=57.17 Aligned_cols=62 Identities=11% Similarity=-0.011 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 588 VYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
...+..+...+...|++++|+..|++.++.... +...|..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444444444444433211 23334444444444444444444444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=5.4e-05 Score=61.38 Aligned_cols=90 Identities=11% Similarity=0.086 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 004791 553 SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD------VYTY 626 (730)
Q Consensus 553 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~ 626 (730)
...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|++.++++++..+. + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 4455556666666666777776666666543 345666666666777777777777777776664322 2 3344
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 004791 627 TAFIQAYCSIGKLDEAED 644 (730)
Q Consensus 627 ~~l~~~~~~~g~~~~A~~ 644 (730)
..+..++...|+.++|.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 444555555554444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0012 Score=50.88 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004791 553 SYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQA 632 (730)
Q Consensus 553 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 632 (730)
...+..+...+...|++++|...+++.++.. +.+...+..+..++...|++++|.+.+++..+..+. +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3455556666666677777777776666543 345566666677777777777777777777665322 45555555555
Q ss_pred HHhc
Q 004791 633 YCSI 636 (730)
Q Consensus 633 ~~~~ 636 (730)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0025 Score=62.64 Aligned_cols=74 Identities=22% Similarity=0.137 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 620 KPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
+.+..+|..+...+...|++++|...++++...+ |+...|..++..+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 3477788888777777899999999999998854 78878888888888899999999999888874 77777654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0017 Score=51.25 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 650 (730)
+...+..+...+...|++++|++.|+++++..+. +...|..+..+|...|++++|++.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444555555555555544443322 33344444444445555555554444444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0018 Score=51.09 Aligned_cols=64 Identities=20% Similarity=0.115 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 622 DVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+...+..+..+|...|++++|++.|+++.+.+ +.+...|..++.+|...|++++|++.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566677777777777777777777777643 22456677777777777777777777777654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0026 Score=65.37 Aligned_cols=62 Identities=11% Similarity=-0.032 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004791 624 YTYTAFIQAYCSIGKLDEAEDLIVKMNR-----EG-IVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMF 685 (730)
Q Consensus 624 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 685 (730)
.+++.|+.+|...|++++|..++++.++ .| -.|+ ..+++.|+..|..+|++++|+.++++.+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3455555555566666666655555543 12 0111 3445566666666666666666666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.013 Score=57.55 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004791 585 KPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTL 663 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 663 (730)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++... +.|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 5678888888777777899999999999999875 6787888888899999999999999999998 4587777653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0068 Score=62.34 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=58.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLG---LKP----DVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE-----G-IVPD-SVTYTL 663 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~---~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~-~~~~~~ 663 (730)
+...|++++|++++++.++.. +.| -..+++.|+.+|...|++++|+.+++++++- | -.|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334556666666666665421 111 1345666666677777777777777665531 2 1111 445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHH
Q 004791 664 LICAYAHLGLIYSAFDVLKRMF---DAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 664 l~~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~~~~~l~~~l 703 (730)
|+..|...|++++|+.++++.+ +.-+.||+.....+...+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 7777777777777777776664 223445555544444443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.88 E-value=3e-07 Score=91.17 Aligned_cols=265 Identities=14% Similarity=0.161 Sum_probs=166.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004791 167 SVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLIL 246 (730)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 246 (730)
.+.+|+.|.++..+.+++.+|++.|-++ -|...|..++.+..+.|.+++-..++....+. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 3457999999999999999998877322 25556888999999999999999888766554 345566678999
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 247 GYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSE 326 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 326 (730)
+|++.+++.+-.+ ... .||+.-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++..
T Consensus 125 ayAk~~rL~elEe----fl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEE----FIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTS----TTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHH----HHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 9999998776332 222 26777777888888899999888877765432 2334445566777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004791 327 ALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406 (730)
Q Consensus 327 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (730)
|.+.-+ + ..++.||..+-.+|...+++..|...--.++-. ..-...++..|-..|.+++-+.+++.-..
T Consensus 189 AVdaAr---K---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGAR---K---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTT---T---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHH---h---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 665422 1 126677887777888877777665544444322 11222355567777777777777776653
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC------ChhhHHHHHHHHHhCCChhHHH
Q 004791 407 NNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQ-NLSP------TLITYNSLIYGQCREGHLDSAY 468 (730)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~g~~~~a~ 468 (730)
.. ....-.|+.|.-.|++-. .++..+.++-.-.+ +++. ....|.-++-.|.+-.+++.|.
T Consensus 258 lE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 21 334556666666666542 33333332221111 1111 2334555555565555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0036 Score=49.04 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=31.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 595 IEEVLKEGDFDHAHRLLDQMVSLGLKPDVY-TYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
...+...|++++|++.++++++.... +.. .|..+..+|...|++++|.+.|++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445556666666666665554322 444 555555666666666666666666655
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0089 Score=61.35 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHHHHHHH
Q 004791 567 RKVQEALLLVEKMTK---MGVKPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVS-----LGLK-P-DVYTYTAFIQA 632 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~~l~~~ 632 (730)
|++++|..++++.++ .-+.|+ ..+++.+..+|...|++++|+.+++++++ .|.. | ...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455555555555443 111121 34556666666666666666666666654 2221 2 23457777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004791 633 YCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 633 ~~~~g~~~~A~~~~~~m~~ 651 (730)
|..+|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777777654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.024 Score=47.77 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 004791 604 FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG---KLDEAEDLIVKMNREGIVP--DSVTYTLLICAYAHLGLIYSAF 678 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~ 678 (730)
+..+++-|.+..+.|. ++..+...+.+++.+.+ +.++++.++++..+.+ .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555543 46666666667777766 4556777777766643 23 2455556666677777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHH
Q 004791 679 DVLKRMFDAGCEPSHHTYAFL 699 (730)
Q Consensus 679 ~~~~~m~~~g~~p~~~~~~~l 699 (730)
++++.+++. +|+..--..|
T Consensus 92 ~y~~~lL~i--eP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQT--EPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHH
Confidence 777777663 6655444444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.025 Score=58.15 Aligned_cols=90 Identities=9% Similarity=0.025 Sum_probs=61.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHH
Q 004791 562 GLYRERKVQEALLLVEKMTKMG---VKPT----VYTYTILIEEVLKEGDFDHAHRLLDQMVS-----LGLK-P-DVYTYT 627 (730)
Q Consensus 562 ~~~~~~~~~~A~~~~~~m~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p-~~~~~~ 627 (730)
.+.+.|++++|+.++++.++.. +.|+ ..+++.++..|...|++++|+.++++++. .|.. | ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445677777777777776421 1222 35667777778888888888888877765 2221 2 244678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.|...|..+|++++|..++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888888888888888888888764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0076 Score=47.14 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=36.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004791 560 IDGLYRERKVQEALLLVEKMTKMGVKPTVY-TYTILIEEVLKEGDFDHAHRLLDQMVSLG 618 (730)
Q Consensus 560 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 618 (730)
...+.+.|++++|+..++++++.. +.+.. .+..+..++...|++++|++.|+++++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344556666667777666666543 33455 66666666667777777777777766643
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.43 E-value=1.6 Score=48.54 Aligned_cols=256 Identities=14% Similarity=0.098 Sum_probs=116.2
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCC--hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCChhhHHHHHHH
Q 004791 387 GYCKEGLMEAALQILDLMKSNNCSPN--ARTYNELICGFCKRKNVHRAMSLLNELLEQNL-------SPTLITYNSLIYG 457 (730)
Q Consensus 387 ~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~~ 457 (730)
+....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34556666666666665543210112 12222333334444544556666655554211 0111122233333
Q ss_pred HHhCCC-hhHHHHHHHHHHhCCCCCCHHh--HH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH--HHHh
Q 004791 458 QCREGH-LDSAYKVLHLINESGLVPDQFT--YS--VFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALID--GYCK 530 (730)
Q Consensus 458 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~ 530 (730)
..-.|. -+++.+.+..+.... +... .. .+...+...|+.+....++..+.+.. +..+...+.. ++..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333332 234455555544421 1111 11 22233445566666666666655432 2223333333 3345
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004791 531 EGKIDDAHSLLERMLSDDCLPNSYTYN--ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAH 608 (730)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 608 (730)
.|+.+.+..+.+.+.... .|....-. ++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 677777777776666532 22222222 23334556667666666777766532 223332333333344456655566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 004791 609 RLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL-DEAEDLIVKMNR 651 (730)
Q Consensus 609 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 651 (730)
++++.+.+.+ .|....-..+.-+....|+. .+|++++..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6666555432 33333333333333334432 567777777764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.02 Score=44.10 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 622 DVYTYTAFIQAYCSIGK---LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 622 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
|...+..+..++...++ .++|..++++..+.. +-+...+..++..+...|++++|+..|+++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444432222 345555555555422 11344444444555555555555555555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.015 Score=48.88 Aligned_cols=85 Identities=9% Similarity=0.048 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 004791 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG---DFDHAHRLLDQMVSLGLKP--DVYTYTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 569 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 643 (730)
...+.+.|.+..+.+ +++..+...+..++++.+ ++++++.+|++..+.+ .| ....+..|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345556666665555 467777777777777777 5667888887777754 23 3445556666778888888888
Q ss_pred HHHHHHHHCCCCCC
Q 004791 644 DLIVKMNREGIVPD 657 (730)
Q Consensus 644 ~~~~~m~~~g~~~~ 657 (730)
++++.+.+ +.|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 88888887 4563
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.23 Score=56.22 Aligned_cols=152 Identities=10% Similarity=0.049 Sum_probs=91.9
Q ss_pred HHhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCChhH
Q 004791 178 LSKFHLVDEMKR-VYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKDVEK 256 (730)
Q Consensus 178 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 256 (730)
....+++++|.. ++.. .++......++..+.+.|..++|.++.+... .-.....+.|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 345677777766 4311 1112233667777778888888876653211 11233456788888
Q ss_pred HHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 257 GFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA 336 (730)
Q Consensus 257 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (730)
|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 88887655 3567888888888888888888888887753 34455555556666665555444444
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 337 RGCEPNVHTYTVLIDCLCKENKVDEASELLNR 368 (730)
Q Consensus 337 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 368 (730)
.| -++....+|.+.|++++|.+++.+
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 32 123344445555666666655443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.024 Score=43.65 Aligned_cols=68 Identities=15% Similarity=0.027 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 585 KPTVYTYTILIEEVLKEGD---FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG 653 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 653 (730)
+.|...+..+..++...++ .++|..++++.++.++. +......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5678888889988876665 79999999999997644 78888999999999999999999999999864
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.25 Score=46.49 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-C
Q 004791 604 FDHAHRLLDQMVSLGLKPD---VYTYTAFIQAYCSI-----GKLDEAEDLIVKMNREGIVP--DSVTYTLLICAYAHL-G 672 (730)
Q Consensus 604 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~-g 672 (730)
..+|...+++.++. .|+ ...|..++..|.+. |+.++|.+.|++.++ +.| +..++..+...++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 56777777777774 444 55677777777773 888888888888887 445 367777777777774 8
Q ss_pred CHHHHHHHHHHHHHcCCC--CCHH
Q 004791 673 LIYSAFDVLKRMFDAGCE--PSHH 694 (730)
Q Consensus 673 ~~~~A~~~~~~m~~~g~~--p~~~ 694 (730)
+.++|.+.+++.+..... |+..
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChh
Confidence 888888888888876555 5543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.12 E-value=1.7e-05 Score=78.91 Aligned_cols=468 Identities=13% Similarity=0.092 Sum_probs=264.1
Q ss_pred hccCCChhhHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcccChhhHHHHHHHHHHHhhcCCcc
Q 004791 83 FSLDLNPQTALDFSYWISQKPGFKHSVESYSSLLNLLIRNNFTKASEKIVFLMLKSCSLDKEILFVLDFLRRVNESGSEF 162 (730)
Q Consensus 83 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (730)
+..-.+.++|.+|-..+. .+.+|..+..+....+...+|.. .+.+
T Consensus 35 ~e~i~~ldRa~eyA~~~n-------~p~VWs~LgkAqL~~~~v~eAId-------syIk--------------------- 79 (624)
T 3lvg_A 35 IEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAID-------SYIK--------------------- 79 (624)
T ss_dssp CGGGCCSTTTTTSSSSCC-------CCCCSSSHHHHTTTSSSCTTTTT-------SSCC---------------------
T ss_pred HHhccccHHHHHHHHHhC-------CccHHHHHHHHHHccCchHHHHH-------HHHh---------------------
Confidence 334455556655544332 34568788888777777776632 1111
Q ss_pred ccccCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHhHH
Q 004791 163 SLKLSVKGYNTLLMQLSKFHLVDEMKRVYLEMLDNMVVPNIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTFTYT 242 (730)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 242 (730)
..|+..|..++.+..+.|.+++-+..+.-+.+. ..+...=+.|+-+|++.++..+-.+++ ..|++.-..
T Consensus 80 --A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq 148 (624)
T 3lvg_A 80 --ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQ 148 (624)
T ss_dssp --CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTH
T ss_pred --CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHH
Confidence 235556888888888999999999888655544 234445568999999999987655443 247777778
Q ss_pred HHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 004791 243 SLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG 322 (730)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 322 (730)
.+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..|.+.-+ +. -+..||..+-.+|...+
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaAr---KA---ns~ktWKeV~~ACvd~~ 213 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGAR---KA---NSTRTWKEVCFACVDGK 213 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTT---TC---CSSCSHHHHTHHHHHSC
T ss_pred HHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHH---hc---CChhHHHHHHHHHhCch
Confidence 889999999999999888876654 4445566777888887776432 22 36788888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 004791 323 RKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILD 402 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 402 (730)
.+.-|.-.--.++-. ..-...++..|-..|.+++-+.+++..+.. -....-.|+-|.-.|++- +.++..+.++
T Consensus 214 EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 214 EFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred HHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 887776554444422 222345666778888888888888877632 123566777777777765 3444444333
Q ss_pred HHHh-CCCC------CChhcHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCCCChhhHHHHHHHHHhCC
Q 004791 403 LMKS-NNCS------PNARTYNELICGFCKRKNVHRAMSLL-------------NELLEQNLSPTLITYNSLIYGQCREG 462 (730)
Q Consensus 403 ~m~~-~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~-------------~~~~~~~~~~~~~~~~~li~~~~~~g 462 (730)
..-. .+++ .....|..++-.|++-.+++.|.... .+++.+ ..+...|..-|.-|.+..
T Consensus 287 lf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~ 364 (624)
T 3lvg_A 287 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 364 (624)
T ss_dssp TSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSC
T ss_pred HHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhC
Confidence 2211 1211 13456777777777777777665321 111110 123334444444333321
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHH----
Q 004791 463 HLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAH---- 538 (730)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---- 538 (730)
+..-..++.-+.. .+.+. ..++.+.+.|++.-...++......+ +..+-.++-+.|....+++.-.
T Consensus 365 -P~lL~DLL~vL~p-rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~N---~~aVNeAln~L~IEEEDy~~LR~SId 434 (624)
T 3lvg_A 365 -PLLLNDLLMVLSP-RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 434 (624)
T ss_dssp -CTTSHHHHHHHCT-TCCST-----TTHHHHHTTTCGGGGTGGGTSCCCSC---CHHHHHHHHHHHHHTTCCHHHHHTTS
T ss_pred -hHHHHHHHHhccc-cCChH-----HHHHHHHhcCCchhhHHHHHHHHHhh---HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 1111111111111 01100 12333444444443333333332221 3344455556666666655432
Q ss_pred --------HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004791 539 --------SLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRL 610 (730)
Q Consensus 539 --------~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 610 (730)
.+-.++.+. +-..--..-...|.+++++++++.+.++ .+ .|.-.|......|+.+-|.++
T Consensus 435 ~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elaeeL 502 (624)
T 3lvg_A 435 AYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAEEL 502 (624)
T ss_dssp SCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHHHH
T ss_pred HhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHHHH
Confidence 222222221 1222223334446677778777765421 11 122234445567777778888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004791 611 LDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDL 645 (730)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 645 (730)
++-.++.| +...|.+.+..|...=+.+.++++
T Consensus 503 L~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 503 LQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 87777754 344566666566555566666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.55 Score=44.21 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCH
Q 004791 289 VDEALDLFRRMGEDDCRPT---VRTYTVVIFGLCRV-----GRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKE-NKV 359 (730)
Q Consensus 289 ~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 359 (730)
...|...+++..+.+ |+ ...|..+...|.+. |+.++|.+.|++.++.++.-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 356777777777654 44 45788888888884 88888888888888876543477777788888774 888
Q ss_pred HHHHHHHHHHHHCCCC--CChhhHHH
Q 004791 360 DEASELLNRMLEKGLF--PNVVTYNA 383 (730)
Q Consensus 360 ~~A~~~~~~~~~~g~~--~~~~~~~~ 383 (730)
++|.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888887555 55444333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.12 Score=58.45 Aligned_cols=123 Identities=14% Similarity=0.076 Sum_probs=61.2
Q ss_pred hcCChhHHHH-HHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004791 250 RNKDVEKGFR-VFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEAL 328 (730)
Q Consensus 250 ~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (730)
..+++++|.+ ++..+. +......++..+.+.|..++|.++.+.-. .-.......|++++|.
T Consensus 611 ~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLAR 672 (814)
T ss_dssp HTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHH
Confidence 4556666655 443222 01122555555666666666665442110 1122334556666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004791 329 EFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMK 405 (730)
Q Consensus 329 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (730)
++.+.+ .+...|..+...+.+.|+++.|++.|.++.. |..+...|...|+.+...++-+...
T Consensus 673 ~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 673 DLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 654322 1455666666666666666666666665432 2334444444555554444433333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.4 Score=38.71 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=91.2
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004791 529 CKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAH 608 (730)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 608 (730)
.-.|..++..++..+..... +..-||=+|--....-+-+-..+.++..-+. -| ...+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 34677777777777766632 4444444443333344444444444444321 11 12456666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 609 RLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 609 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 688 (730)
..+-.+ ..+.......++.+..+|+.++-.+++..+... .+|++.....+..+|.+.|+..+|.+++++.-++|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 666544 224556677778888999999999988886443 46788888899999999999999999999988888
Q ss_pred CC
Q 004791 689 CE 690 (730)
Q Consensus 689 ~~ 690 (730)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.88 Score=39.29 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=12.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHhc
Q 004791 238 TFTYTSLILGYCRNKDVEKGFRVFMMM 264 (730)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m 264 (730)
...|..|.....+.|+++-|.+.|...
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444444444444444444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.12 Score=40.65 Aligned_cols=61 Identities=11% Similarity=0.050 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNREG------IVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+..++..+...|+++.|..++++..+.- -.+....+..|+.++.+.|++++|..+++++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445555555555555555555544310 012344555555555555666666665555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.45 Score=41.09 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=78.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 004791 526 DGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFD 605 (730)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 605 (730)
..-.+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3345678888888777654 4677788888888888888888888776543 233444555667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 606 HAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 606 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
+-.++-+.....| + ++.....+...|+++++.+++.+.-+ .|.. +-.....|..+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 6666655555443 1 34444556667888888777754332 1111 11122356666777666554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.69 Score=37.40 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 311 YTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGL 374 (730)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 374 (730)
....++.+...|+-++-.+++.++.. +.+|++.....+..+|.+.|+..+|.+++.+.-++|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444445555555555555555433 2234455555555555555555555555555555543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.097 Score=41.25 Aligned_cols=69 Identities=22% Similarity=0.161 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLG------LKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
+..-+..++..+...|+++.|...|+++++.. ..+...++..|..++.+.|++++|..+++++.+ +.|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 33445566666777777777777777666521 122456677777788888888888888888776 3454
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.21 Score=41.41 Aligned_cols=104 Identities=15% Similarity=0.246 Sum_probs=61.8
Q ss_pred cChhhHHHHHHHHHhcCCH------HHHHHHHHHHhhCCCCCChh-hHHHHHH------HHHhcCCHHHHHHHHHHHHHC
Q 004791 271 RNEVSYTNLIHGLCEAKRV------DEALDLFRRMGEDDCRPTVR-TYTVVIF------GLCRVGRKSEALEFFNEMSAR 337 (730)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~m~~~ 337 (730)
.|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|...|. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666666 6666666666543 344321 1111111 112336777788888777665
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004791 338 GCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFP 376 (730)
Q Consensus 338 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 376 (730)
.+--...|......-.++|++..|++++...+..+..|
T Consensus 90 -hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 -CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 22236666667777777888888888888877776553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.36 Score=38.94 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 004791 602 GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDE---AEDLIVKMNREGIVP--DSVTYTLLICAYAHLGLIYS 676 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~g~~~~ 676 (730)
..+..+.+-|.+....|. ++..+-..+.+++.+..+..+ ++.+++...+.+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334455555555555443 566666667777777666555 777777766643 23 23444556667777777777
Q ss_pred HHHHHHHHHHcCCCCCHH
Q 004791 677 AFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 677 A~~~~~~m~~~g~~p~~~ 694 (730)
|.++++.+++. +|+..
T Consensus 93 A~~~~~~lL~~--eP~n~ 108 (126)
T 1nzn_A 93 ALKYVRGLLQT--EPQNN 108 (126)
T ss_dssp HHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHh--CCCCH
Confidence 77777777764 66543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.51 Score=39.13 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK 620 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 620 (730)
++.++|.++|+.+++.+-.- ...|......-.++|+++.|++++.+.+..+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44455555555544321111 444444444445555555555555555555444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.49 E-value=7.7 Score=43.31 Aligned_cols=279 Identities=15% Similarity=0.046 Sum_probs=145.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC-------CCCHHhHHHHHH
Q 004791 421 CGFCKRKNVHRAMSLLNELLEQN--LSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGL-------VPDQFTYSVFID 491 (730)
Q Consensus 421 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~ 491 (730)
-+....|+.++++.++.+.+..+ -.+....-..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34556778888888877766522 112223333444555666666677777766554211 011222233333
Q ss_pred HHHhcCC-HHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 492 TLCKRGR-VEEAQVLFDSLEKKGIK-AGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKV 569 (730)
Q Consensus 492 ~~~~~g~-~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 569 (730)
++.-.|. -+++.+.+..+....-. .....-.+|...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 3333332 23455555555543211 001122234445566777777777777766542 12222233333444467888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 570 QEALLLVEKMTKMGVKPTVYTY--TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIV 647 (730)
Q Consensus 570 ~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 647 (730)
+.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888887777632 2222211 233456677788777777888887642 2233333333334445676666777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 004791 648 KMNREGIVPDSVTYTLLICAYAHLGLI-YSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNK 706 (730)
Q Consensus 648 ~m~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~ 706 (730)
.+.+.+ .|....-..+.-+....|.. .+++..+..+.. .+|..+-..-+.+|+..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMI 674 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHH
Confidence 666543 33333333333333434432 677778888764 56666655555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.18 Score=40.70 Aligned_cols=86 Identities=9% Similarity=0.023 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 004791 568 KVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDH---AHRLLDQMVSLGLKP--DVYTYTAFIQAYCSIGKLDEA 642 (730)
Q Consensus 568 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 642 (730)
....+.+-|.+....| .++..+-..+..++.+..+..+ ++.+++.+...+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555554444 3666666667777777665554 777777776653 12 233444556677788888888
Q ss_pred HHHHHHHHHCCCCCC
Q 004791 643 EDLIVKMNREGIVPD 657 (730)
Q Consensus 643 ~~~~~~m~~~g~~~~ 657 (730)
.++++.+++ +.|+
T Consensus 94 ~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHH--hCCC
Confidence 888888877 4453
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.87 E-value=6.9 Score=37.48 Aligned_cols=26 Identities=15% Similarity=0.002 Sum_probs=19.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004791 342 NVHTYTVLIDCLCKENKVDEASELLN 367 (730)
Q Consensus 342 ~~~~~~~li~~~~~~g~~~~A~~~~~ 367 (730)
++.....+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56677777777888888877777653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=1.6 Score=43.96 Aligned_cols=73 Identities=22% Similarity=0.160 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHHHHH
Q 004791 626 YTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF-----DAGCEPSHHTYAFL 699 (730)
Q Consensus 626 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~l 699 (730)
...++..+...|++++|...+..+.... +-+...|..++.+|.+.|+..+|++.|+++. +.|++|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3455666677777777777777777643 3367777777777777888888877777664 35777777654433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.23 E-value=1.4 Score=33.53 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 639 LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 639 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
.=+..+-++.+...++.|++......+.+|.+.+++.-|+++++-+..+ +.+...+|..++.-+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 4455566666666667777777777777777777777777777766543 333344566665544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.99 E-value=1.1 Score=48.78 Aligned_cols=128 Identities=11% Similarity=-0.027 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHhchhC------CCC-cCh---
Q 004791 206 FNTMINGCCKVGN-VGEAELYVSKIVQAGLSPDTFTYTSLILGYCRNKD-VEKGFRVFMMMPKK------GCR-RNE--- 273 (730)
Q Consensus 206 ~~~ll~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------~~~-~~~--- 273 (730)
...++..+...++ ++.|..+|+++.+.....+......++..+.+.++ --+|.++..+..+. ..+ .+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3444555555556 47788888888876432222222333333333322 12344444333210 111 111
Q ss_pred -------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 274 -------VSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEM 334 (730)
Q Consensus 274 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 334 (730)
.....-+..+...|+++-|+++-++..... +-+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222344556677777777777766542 334557777777777777777777666655
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.75 E-value=5.2 Score=32.40 Aligned_cols=77 Identities=9% Similarity=0.081 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004791 620 KPDVYTYTAFIQAYCSIGKL---DEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTY 696 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 696 (730)
.|+..+--.+.+++.+..+. .+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+++ ++|+..--
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHHH
Confidence 45555555666666655543 34666666666544111244555566667777777777777776665 35655443
Q ss_pred HH
Q 004791 697 AF 698 (730)
Q Consensus 697 ~~ 698 (730)
..
T Consensus 115 ~~ 116 (134)
T 3o48_A 115 GA 116 (134)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.60 E-value=1.7 Score=47.51 Aligned_cols=50 Identities=14% Similarity=0.002 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 004791 656 PDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSNKK 707 (730)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~~~ 707 (730)
-+..-|..|+....+.++++||.+.|+..+.. .=+...+..|++.|.+.+
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 34556999999999999999999999999975 456788999999998765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.43 E-value=7.9 Score=31.80 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=10.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004791 629 FIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 629 l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
|.-++.+.|++++|.++.+.+.+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33344444444444444444444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.34 E-value=3.8 Score=33.20 Aligned_cols=71 Identities=8% Similarity=0.015 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 585 KPTVYTYTILIEEVLKEGD---FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 5666676667777777665 446788888877754322355566677788888888888888888887 4564
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.27 E-value=6.7 Score=45.93 Aligned_cols=192 Identities=16% Similarity=0.091 Sum_probs=116.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-------------
Q 004791 242 TSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGED----DC------------- 304 (730)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~------------- 304 (730)
..++..+.+.|.++-+.++..-.. .+...--.+..+|...|++++|.+.|.+.... +.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 345666677777777776654443 24444455677778888888888888765321 00
Q ss_pred -----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004791 305 -----RPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNV----HTYTVLIDCLCKENKVDEASELLNRMLEKGLF 375 (730)
Q Consensus 305 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 375 (730)
..-..-|..++..+.+.|.++.++++-...++.....+. ..|..+...+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 001134677888888899999988887776654322121 2577788889999999999988888776543
Q ss_pred CChhhHHHHHHHHHhCC------------CHHHHHHHHHHHHhCC--CCCChhcHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 004791 376 PNVVTYNALIDGYCKEG------------LMEAALQILDLMKSNN--CSPNARTYNELICGFCKRKNVHRAMS-LLNELL 440 (730)
Q Consensus 376 ~~~~~~~~li~~~~~~g------------~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~-~~~~~~ 440 (730)
-......|+..+|..| ..++..+++..-.+.. ....+.-|..|-..+...|++..|-. +|+.+.
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 3445666666666544 4455556654432211 11112234555555566677665544 455544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.35 E-value=11 Score=30.96 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 004791 620 KPDVYTYTAFIQAYCSIGK---LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTY 696 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 696 (730)
.|+..+--.+.+++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+++. +|+..--
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHH
Confidence 5678888888888888775 4568889999887542223555667778999999999999999999984 8876544
Q ss_pred HHH
Q 004791 697 AFL 699 (730)
Q Consensus 697 ~~l 699 (730)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.17 E-value=4.4 Score=34.35 Aligned_cols=119 Identities=9% Similarity=-0.025 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHh
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDNM-VVPNI-------YTFNTMINGCCKVGNVGEAELYVSKIVQAG--LSPDTFT 240 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~ 240 (730)
+-.-++.+...|.++.|+.+...++... ..|+. .++..+.+++...|++..|...|++.++.. +..+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4444566778889999988887765431 23332 256778889999999999999999976431 1111111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004791 241 YTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGED 302 (730)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 302 (730)
+..+. -....... + ....+...--.+..+|.+.|++++|+.+++.+..+
T Consensus 103 ~~~~~----~~ss~p~s---~------~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPSTG----NSASTPQS---Q------CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccc----ccCCCccc---c------cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11110 00000000 0 11133444445778888888888888888876443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.10 E-value=28 Score=35.44 Aligned_cols=164 Identities=14% Similarity=0.128 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HH
Q 004791 521 YTALIDGYCKEGKIDDAHSLLERMLSD--DCLPN---SYTYNALIDGLYRERKVQEALLLVEKMTK----MGVKPT--VY 589 (730)
Q Consensus 521 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~~~--~~ 589 (730)
...|...|...|++.+|.+++..+... +.... ...+...+..|...+++.+|..++.++.. ...+|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345667777777787777777776542 11111 23455666777777888888777776532 221222 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLG-LKPDVYTYT----AFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLL 664 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 664 (730)
.+...+..+...+++.+|...|.++.+.. ...|...+. .++.+..-.+...+-..++.+.......++...|..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 45566677777788888777777665420 111222221 1111111122112222233332222122456677777
Q ss_pred HHHHHhc--CCHHHHHHHHHHH
Q 004791 665 ICAYAHL--GLIYSAFDVLKRM 684 (730)
Q Consensus 665 ~~~~~~~--g~~~~A~~~~~~m 684 (730)
+.+|... .+++...+.|+..
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHhchHhhhHHHHHHHHHH
Confidence 7777654 3566666655544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.42 E-value=31 Score=35.17 Aligned_cols=189 Identities=14% Similarity=0.165 Sum_probs=98.8
Q ss_pred CChhHHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----HhcC
Q 004791 462 GHLDSAYKVLHLINES-----GLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGY----CKEG 532 (730)
Q Consensus 462 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g 532 (730)
|++++|++.+..+.+. +..........++..|...|+++...+.+..+.+.... -......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 6777787776555432 23344566777888888888888877777665544222 112222333322 2222
Q ss_pred ChhHHHH--HHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHH
Q 004791 533 KIDDAHS--LLERMLS--DD-CLP---NSYTYNALIDGLYRERKVQEALLLVEKMTK--MGVKPT---VYTYTILIEEVL 599 (730)
Q Consensus 533 ~~~~A~~--~~~~~~~--~~-~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~~~---~~~~~~l~~~~~ 599 (730)
..+.... +.+.... .| +-. .......|...+...|++.+|..++.++.. .|..+. ...+..-+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221111 1111100 11 001 112334566667777777777777777653 221111 234555566777
Q ss_pred HcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 600 KEGDFDHAHRLLDQMVS----LGLKPD--VYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..+++.+|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777777777776532 211222 23445556666667777777776666653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.24 E-value=3 Score=33.63 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 641 EAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
+..+-++.+...++.|++......+.+|.+.+++.-|+++++-+..+ +.+...+|..++.-+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 44555556666666777777777777777777777777777766543 344445566555544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.00 E-value=29 Score=34.50 Aligned_cols=225 Identities=10% Similarity=-0.026 Sum_probs=122.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHHHH-
Q 004791 483 QFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGI-K---AGEVIYTALIDGYCKE-GKIDDAHSLLERMLSDDCLPNSYTY- 556 (730)
Q Consensus 483 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~- 556 (730)
......+...|.+.|+.++..+++......-. . -.......+++.+... +..+.-.++..+.++.. .....+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45567788888999999988888877643210 0 0233456677777663 34444455555544311 0011122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHH
Q 004791 557 -----NALIDGLYRERKVQEALLLVEKMTKM--GVKPT---VYTYTILIEEVLKEGDFDHAHRLLDQMVSL--GLKPDVY 624 (730)
Q Consensus 557 -----~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~ 624 (730)
.-++..|...|++.+|.+++.++.+. ..... ...+..-+..|...|++.++...+.+.... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25677888888888888888887752 11111 234555567788888888888888877652 1223333
Q ss_pred HHH----HHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHH
Q 004791 625 TYT----AFIQAYC-SIGKLDEAEDLIVKMNREGIVPDSV----TYTLLICAYAHLGLIYSAFDVLKRM-FDAGCEPSHH 694 (730)
Q Consensus 625 ~~~----~l~~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~ 694 (730)
+.. .-+..+. ..+++.+|...|-+..+.--..+.. ....++-+-.-.++..+-..++..= ...--.|+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHH
Confidence 222 2223345 6788888888777765311011111 2222333333344443433322211 2222234444
Q ss_pred HHHHHHHHHHcCCh
Q 004791 695 TYAFLIKHLSNKKV 708 (730)
Q Consensus 695 ~~~~l~~~l~~~~~ 708 (730)
.+..++.++.....
T Consensus 258 ~l~~L~~a~~~~dl 271 (394)
T 3txn_A 258 AMKSVAEASHKRSL 271 (394)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCH
Confidence 55666666666544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.85 E-value=3.3 Score=41.58 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNR-----EGIVPDSVTY 661 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 661 (730)
...++..+...|++++|...+..+....+ -+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34456677788888888888888877542 3777888888999999999999888888654 4888876653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.83 E-value=25 Score=33.59 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=18.3
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHH
Q 004791 236 PDTFTYTSLILGYCRNKDVEKGFRVFM 262 (730)
Q Consensus 236 ~~~~~~~~li~~~~~~g~~~~A~~~~~ 262 (730)
-|+.....+...|.+.|++.+|...|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 356666677777777777777776664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.25 E-value=13 Score=43.57 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=108.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------------
Q 004791 277 TNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEP--------------- 341 (730)
Q Consensus 277 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--------------- 341 (730)
..++..+.+.|.++-|.++...... +...--.+..++...|++++|.+.|.+... |+..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 3466778888999988876654432 344445678889999999999999976531 1100
Q ss_pred --------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 004791 342 --------NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNV----VTYNALIDGYCKEGLMEAALQILDLMKSNNC 409 (730)
Q Consensus 342 --------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (730)
-..-|..++..+.+.|.++.+.++-...++....-+. ..|..+.+.+...|++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~- 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP- 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence 1234777888999999999999888877765322222 257888999999999999999998887653
Q ss_pred CCChhcHHHHHHHHHhcCCHHHHHH
Q 004791 410 SPNARTYNELICGFCKRKNVHRAMS 434 (730)
Q Consensus 410 ~~~~~~~~~li~~~~~~~~~~~A~~ 434 (730)
--......|+..+|..|..+.-..
T Consensus 969 -~r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 969 -LKKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp -SCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCChhhhhC
Confidence 345667788888888887765543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.95 E-value=29 Score=33.48 Aligned_cols=25 Identities=16% Similarity=-0.056 Sum_probs=18.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHH
Q 004791 307 TVRTYTVVIFGLCRVGRKSEALEFF 331 (730)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~ 331 (730)
|......+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5566667777777888887777766
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.89 E-value=32 Score=33.16 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=20.3
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHH
Q 004791 235 SPDTFTYTSLILGYCRNKDVEKGFRVF 261 (730)
Q Consensus 235 ~~~~~~~~~li~~~~~~g~~~~A~~~~ 261 (730)
.-|+.....+...|.+.+++.+|..-|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 346666777778888888888887777
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.98 E-value=9.8 Score=32.23 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=10.6
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 004791 629 FIQAYCSIGKLDEAEDLIVK 648 (730)
Q Consensus 629 l~~~~~~~g~~~~A~~~~~~ 648 (730)
+..+|.+.|++++|+.+++.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHhc
Confidence 44455555555555555444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.42 E-value=15 Score=27.94 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004791 533 KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 581 (730)
+.-+..+-++.+...+..|++.+..+.+.+|.+.+++.-|.++++-...
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445556666666666667777777777777777777777777766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 730 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-07 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 4e-07
Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 12/221 (5%)
Query: 202 NIYTFNTMINGCCKVGNVGEAELYVSKIVQAGLSPDTF-TYTSLILGYCRNKDVEKGFRV 260
++ + G + A + K V L P+ Y +L + ++
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAA 225
Query: 261 FMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCR 320
++ V + NL E +D A+D +RR E Y + L
Sbjct: 226 YLRALSLSPNHAVV-HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKE 283
Query: 321 VGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFP-NVV 379
G +EA + +N R C + + L + ++ ++EA L + LE +FP
Sbjct: 284 KGSVAEAEDCYNTAL-RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAA 340
Query: 380 TYNALIDGYCKEGLMEAALQILDLMKSNNCSPN-ARTYNEL 419
++ L ++G ++ AL ++ SP A Y+ +
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYK--EAIRISPTFADAYSNM 379
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 730 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.24 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.15 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.14 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.13 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.02 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.7 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.62 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.54 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.52 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.49 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.42 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.36 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.34 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.31 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.23 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.21 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.19 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.12 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.07 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.93 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.9 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.86 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.82 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.81 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.74 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.55 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.54 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.44 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.35 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.09 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.69 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.53 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.43 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.37 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.35 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.49 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.9 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.75 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.99 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.02 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.99 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 80.12 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.5e-22 Score=205.45 Aligned_cols=381 Identities=15% Similarity=0.047 Sum_probs=183.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 004791 280 IHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKV 359 (730)
Q Consensus 280 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 359 (730)
...+.+.|++++|.+.|+++.+.. +-+...+..+...+.+.|++++|++.|+++++..+. +..++..+..+|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 344455555555555555555443 224455555555555556666666666555554332 445555555555556666
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 360 DEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSLLNEL 439 (730)
Q Consensus 360 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 439 (730)
++|...+....+.... +...+..........+....+........... .................+....+...+.+.
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 6666555555554222 22223333333333333333333333322221 122233333333344444445554444444
Q ss_pred HHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH
Q 004791 440 LEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEV 519 (730)
Q Consensus 440 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 519 (730)
.... +.+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++.....+.. +..
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 238 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHH
Confidence 4332 1233344444455555555555555555544432 113344444455555555555555555555444322 344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 520 IYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVL 599 (730)
Q Consensus 520 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 599 (730)
.+..+...+.+.|++++|+..|++.++.. +.+..++..+...+...|++++|.+.++...... +.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHH
Confidence 44455555555555555555555555443 3344455555555555555555555555554432 344455555555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 004791 600 KEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHLG 672 (730)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g 672 (730)
..|++++|++.|+++++..+. +..++..++.+|.+.|++++|.+.|+++.+ +.| +..+|..++.+|.+.|
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 555555555555555543221 344455555555555555555555555554 233 3445555555555544
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.2e-22 Score=202.23 Aligned_cols=381 Identities=13% Similarity=0.056 Sum_probs=245.1
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004791 247 GYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSE 326 (730)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 326 (730)
.+.+.|++++|.+.++++.+.. |.+..++..+...|.+.|++++|.+.|+++.+.+ +.+..+|..++..+.+.|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 3444555555555555554422 2344455555555555566666666665555443 2344555566666666666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004791 327 ALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKS 406 (730)
Q Consensus 327 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (730)
|++.+....+.... +..............+....+............. ...............+....+...+.....
T Consensus 86 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhc
Confidence 66666665554332 3333444444444444444444444444433222 333444444555556666666666655554
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhH
Q 004791 407 NNCSPNARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTY 486 (730)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 486 (730)
.. +.+...+..+...+...|+.++|...+++.++.. +.+...+..+...+...|++++|...++...... ..+...+
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 42 3345556666666667777777777777666542 2245566777777777788888887777776654 2355666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004791 487 SVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRE 566 (730)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 566 (730)
..+...+.+.|++++|...|+++.+..+. +..++..+...+...|++++|+..++...... +.+...+..+...+...
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHC
Confidence 77777788888888888888888776544 56777888888888888888888888877754 56777788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 638 (730)
|++++|++.|++.++.. +.+..++..+..++.+.|++++|++.|+++++..+. +...|..++.+|.+.|+
T Consensus 319 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 88888888888887754 446777888888888888888888888888875432 56778888888877764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4.1e-13 Score=133.07 Aligned_cols=243 Identities=12% Similarity=0.015 Sum_probs=151.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 004791 418 ELICGFCKRKNVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRG 497 (730)
Q Consensus 418 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 497 (730)
.....+.+.|++++|+..|+++++.. +.+..+|..+...+...|++++|...+.+..+... -+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 44555666666666666666666643 22455666666666666666666666666655432 24555555666666666
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 498 RVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVE 577 (730)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 577 (730)
++++|.+.++.+....+. ....+........ ..+.......+..+...+.+.+|...+.
T Consensus 102 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPA-YAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTSTT-TGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccc-hHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 666666666666554321 1000000000000 0000011111222334456677888887
Q ss_pred HHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004791 578 KMTKMG-VKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP 656 (730)
Q Consensus 578 ~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 656 (730)
++++.. -..+..++..+...+...|++++|+..|++.+...+. +...|..++.+|...|++++|.+.++++.+. .|
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 237 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL--QP 237 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHH--hh
Confidence 776532 1345677788888888888888888888888876433 6778888888888889999999888888874 34
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 657 -DSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 657 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
+..+|..++.+|.+.|++++|++.|++.++
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577788888888888999999888888875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=7.5e-13 Score=131.15 Aligned_cols=244 Identities=13% Similarity=0.036 Sum_probs=119.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcC
Q 004791 348 VLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRK 427 (730)
Q Consensus 348 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 427 (730)
.....+.+.|++++|...|+++++..+. +..+|..+..+|...|++++|...|.+..+.. +-+...|..++..+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 4555566677777777777776665332 45666666667777777777777776666543 334555666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 004791 428 NVHRAMSLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFD 507 (730)
Q Consensus 428 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 507 (730)
++++|.+.++++.... |+............. ..+.......+..+...+...+|...+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 6666666666665532 111100000000000 0000000011112222334445555555
Q ss_pred HHHHcCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004791 508 SLEKKGIK-AGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKP 586 (730)
Q Consensus 508 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 586 (730)
++.+..+. .+..++..+...+...|++++|+..+++.+... +.+..+|..+...+...|++++|++.|+++++.. +.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 54443221 233444455555555555555555555554433 2334445555555555555555555555554432 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVS 616 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (730)
+..++..++.+|.+.|++++|++.|++.++
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445555555555555555555555444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=6e-10 Score=108.64 Aligned_cols=232 Identities=9% Similarity=0.028 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 004791 449 ITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRG-RVEEAQVLFDSLEKKGIKAGEVIYTALIDG 527 (730)
Q Consensus 449 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 527 (730)
..++.+...+.+.+..++|+++++.+++..+ -+...|+....++...| ++++|+..++.+++..+. +..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 3455566667777788888888888877642 25566777777777665 478888888888877655 67788888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----
Q 004791 528 YCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGD---- 603 (730)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---- 603 (730)
+.+.|++++|+..++++++.+ +.+...|..+...+.+.|++++|++.++++++.+ +.+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 888888888888888888765 5667788888888888888888888888888765 4567777777766666554
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc--C------
Q 004791 604 --FDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICAYAHL--G------ 672 (730)
Q Consensus 604 --~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~--g------ 672 (730)
+++|++.+.++++..+. +...|..+...+... ..+++.+.++...+....+ +...+..++.+|... +
T Consensus 200 ~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 57788888888876533 677777776665444 3577777777776632222 355566666665432 2
Q ss_pred -CHHHHHHHHHHHHH
Q 004791 673 -LIYSAFDVLKRMFD 686 (730)
Q Consensus 673 -~~~~A~~~~~~m~~ 686 (730)
.+++|.++++.+.+
T Consensus 278 ~~~~ka~~l~~~l~~ 292 (315)
T d2h6fa1 278 DILNKALELCEILAK 292 (315)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 24455555555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=7.1e-10 Score=108.12 Aligned_cols=216 Identities=11% Similarity=0.081 Sum_probs=177.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004791 484 FTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGK-IDDAHSLLERMLSDDCLPNSYTYNALIDG 562 (730)
Q Consensus 484 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 562 (730)
..++.+...+.+.+..++|+.+++++++.++. +..+|+....++...|+ +++|+..+++.++.+ +.+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 45566667788899999999999999998766 78899999999888774 899999999999876 6678999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----
Q 004791 563 LYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK---- 638 (730)
Q Consensus 563 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---- 638 (730)
+.+.|++++|+..++++++.. +.+...|..++..+.+.|++++|++.++++++.++. +...|+.+..++.+.|+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 999999999999999999875 568999999999999999999999999999997644 78889888888777665
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 004791 639 --LDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEP-SHHTYAFLIKHLSN 705 (730)
Q Consensus 639 --~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~l~~ 705 (730)
+++|++.+.++.+.. +.+...|..+...+...| .+++.+.+++..+....+ +...+..+...+..
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 689999999999854 336888888877765544 578888888887643333 34455566665543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=4.4e-09 Score=102.30 Aligned_cols=218 Identities=14% Similarity=0.072 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 004791 186 EMKRVYLEMLDNMVVPNIYTFNTMINGCCKV--------------GNVGEAELYVSKIVQAGLSPDTFTYTSLILGYCRN 251 (730)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 251 (730)
.+..+|++++..- .-+...|...+..+-+. +..++|..+|++.++...+.+...|...+..+.+.
T Consensus 34 Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~ 112 (308)
T d2onda1 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3555666666542 22444555444433221 23355666666666543334445555566666666
Q ss_pred CChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCCHHHHHHH
Q 004791 252 KDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFG-LCRVGRKSEALEF 330 (730)
Q Consensus 252 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~ 330 (730)
|+++.|..+|+.+.+.........|...+..+.+.|+++.|.++|+++.+.+ +.+...|...+.. +...|+.+.|..+
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence 6666666666666543221123355666666666666666666666665543 2233333333322 2234556666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004791 331 FNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGL-FPN--VVTYNALIDGYCKEGLMEAALQILDLMKS 406 (730)
Q Consensus 331 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (730)
|+.+.+..+. +...|...+..+.+.|+++.|+.+|++.+.... .|+ ...|...+..-...|+.+.+..+++++.+
T Consensus 192 ~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 192 FELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666554222 455566666666666666666666666555421 211 23455555555555666666665555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.2e-08 Score=101.48 Aligned_cols=200 Identities=14% Similarity=0.065 Sum_probs=118.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCc---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHHH
Q 004791 487 SVFIDTLCKRGRVEEAQVLFDSLEKK----GIKA---GEVIYTALIDGYCKEGKIDDAHSLLERMLSDD----CLPNSYT 555 (730)
Q Consensus 487 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~ 555 (730)
..+...+...|++..+...+...... .... ....+..+...+...|+++.+...+....... .......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 33444555566666666665554321 1110 11234455566667777777777776665421 1122344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 004791 556 YNALIDGLYRERKVQEALLLVEKMTKM--GVKP----TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKP---DVYTY 626 (730)
Q Consensus 556 ~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~ 626 (730)
+..+...+...++..++...+.+.... .... ....+..+...+...|++++|...+++........ ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 555555666677777777776655431 1111 12334555666777788888888877766542221 23455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 627 TAFIQAYCSIGKLDEAEDLIVKMNR----EGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 627 ~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
..+..++...|++++|...++++.. .+..|+ ..++..++.+|...|++++|.+.+++.++
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677778888888888888877653 233332 45677777888888888888888887653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=7.8e-09 Score=100.52 Aligned_cols=187 Identities=15% Similarity=0.174 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004791 498 RVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVE 577 (730)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 577 (730)
..++|..+|++.++...+.+...|..++..+.+.|++++|..++++++.........+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34556666666665433335556666666666667777777777766654422223456666666666677777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 004791 578 KMTKMGVKPTVYTYTILIEE-VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREG-IV 655 (730)
Q Consensus 578 ~m~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~ 655 (730)
++++.+ +.+...|...+.. +...|+.+.|..+|+.+++.. +.+...|..++..+...|+.+.|..+|++..+.. ..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 766654 2333344333332 223466777777777776653 2256667777777777777777777777766643 22
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 656 P--DSVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 656 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
| ....|...+..-...|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 234566666666666777777777777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.7e-08 Score=100.36 Aligned_cols=269 Identities=12% Similarity=-0.020 Sum_probs=166.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHhHHH
Q 004791 173 TLLMQLSKFHLVDEMKRVYLEMLDNMVVPN----IYTFNTMINGCCKVGNVGEAELYVSKIVQAGLS-PD----TFTYTS 243 (730)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~ 243 (730)
.....+...|++++|+..|++.++.....+ ..++..+..++...|++++|...|+++.+.... ++ ...+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 344567788999999999999988643222 235677788888999999999999988653211 11 234555
Q ss_pred HHHHHHhcCChhHHHHHHHhchh----CCCCc---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCChhhHH
Q 004791 244 LILGYCRNKDVEKGFRVFMMMPK----KGCRR---NEVSYTNLIHGLCEAKRVDEALDLFRRMGEDD----CRPTVRTYT 312 (730)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~----~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~ 312 (730)
+...+...|++..|...+..... .+... ....+..+...+...|+++.+...+....... ......++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 66777788888888887776543 11111 12345566677777888888888777765431 122234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC----C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHH
Q 004791 313 VVIFGLCRVGRKSEALEFFNEMSARGCE----P--NVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPN---VVTYNA 383 (730)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~----~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ 383 (730)
.....+...++..++...+.+....... + ....+..+...+...|+.++|...+++........+ ...+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5566667777777777777665432111 1 122345555666677777777777776654422211 233445
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHh----CCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 384 LIDGYCKEGLMEAALQILDLMKS----NNCSPN-ARTYNELICGFCKRKNVHRAMSLLNELLE 441 (730)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 441 (730)
+...+...|++++|...++.... .+..|+ ..++..+...|...|++++|.+.+++.++
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677777777777777766542 122222 34455566666677777777777666544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=5.5e-10 Score=110.51 Aligned_cols=215 Identities=7% Similarity=-0.045 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCChhcHH-HHHHHHHhcCCHHHHH
Q 004791 357 NKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEG--LMEAALQILDLMKSNNCSPNARTYN-ELICGFCKRKNVHRAM 433 (730)
Q Consensus 357 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~~~~~~A~ 433 (730)
|++++|+..++..++..+. +...|..+..++...+ ++++|...+..+.+.. +++...+. .....+...+..++|+
T Consensus 87 ~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHH
Confidence 3355566666665554322 4445555554444443 3556666666655542 22333332 2334444556666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 434 SLLNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKG 513 (730)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 513 (730)
..++++++... -+...|+.+...+.+.|++++|...++...+. .|+ ...+...+...+..+++...+.......
T Consensus 165 ~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~ 238 (334)
T d1dcea1 165 AFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (334)
T ss_dssp HHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 66665555432 24555555666666666555554333222211 000 0111122233344444444444444433
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004791 514 IKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 514 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 581 (730)
+. +...+..++..+...|+.++|...+.+....+ +.+..++..+...+...|++++|++.++++++
T Consensus 239 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 239 AE-PLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp CC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred cc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 21 22333333444444445555555554444432 22333444444444455555555555555444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=5.2e-10 Score=110.70 Aligned_cols=264 Identities=10% Similarity=-0.046 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHH----------HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 004791 289 VDEALDLFRRMGEDDCRPTVRTYTVVIFG----------LCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENK 358 (730)
Q Consensus 289 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 358 (730)
.++|++++++..+.+ |-+...|+..-.. +...|++++|+.+++...+.+++ +...|..+..++...++
T Consensus 45 ~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhcc
Confidence 356666666665543 1222333332222 22334567788888888776554 66677777666666554
Q ss_pred --HHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHhCCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHhcCCHHHHHHH
Q 004791 359 --VDEASELLNRMLEKGLFPNVVTYN-ALIDGYCKEGLMEAALQILDLMKSNNCSPNARTYNELICGFCKRKNVHRAMSL 435 (730)
Q Consensus 359 --~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 435 (730)
+++|...++++.+.... +...+. .....+...+.+++|+..++.+.+.+ +-+...|+.+...+...|++++|...
T Consensus 123 ~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77888888888776332 444443 34466667788888888888887765 45677788888888888877766554
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004791 436 LNELLEQNLSPTLITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIK 515 (730)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 515 (730)
+.+..+. .|+ .......+...+..+++...+........ ++...+..+...+...++.++|...+.+..+..+.
T Consensus 201 ~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 201 GRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp CSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 4433321 011 11233344556677778888777766542 34445556666777788899999999888876543
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 516 AGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY 564 (730)
Q Consensus 516 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 564 (730)
+..++..+..+|...|+.++|++.++++++.+ |.+...|..+...+.
T Consensus 275 -~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 275 -CLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFL 321 (334)
T ss_dssp -HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHHHHh
Confidence 56778888889999999999999999998875 224455565554443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=4.4e-09 Score=99.55 Aligned_cols=199 Identities=13% Similarity=-0.021 Sum_probs=116.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004791 485 TYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY 564 (730)
Q Consensus 485 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 564 (730)
++..+..+|.+.|++++|...|++.++..+. +..+|..+..+|.+.|++++|+..|+++++.. +.+..++..+...+.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 4455566667777777777777777766544 66677777777777777777777777777754 344556677777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHH
Q 004791 565 RERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG----KLD 640 (730)
Q Consensus 565 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~ 640 (730)
..|++++|...|++.++.. +.+......+...+.+.+..+.+..+.......... ...+. ++..+.... ..+
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE--QWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC--STHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh--hhhhh-HHHHHHHHHHHHHHHH
Confidence 7777777777777777654 334444444444555555555555555555443222 11121 122221111 122
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004791 641 EAEDLIVKMNREGIVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSH 693 (730)
Q Consensus 641 ~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 693 (730)
.+...+..... ..| ...+|..++..|...|++++|++.|++.+.. .|+.
T Consensus 193 ~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 242 (259)
T d1xnfa_ 193 RLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 242 (259)
T ss_dssp HHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred HHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCC
Confidence 22222222111 112 2345667788888888888888888888764 4543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=6e-09 Score=98.57 Aligned_cols=196 Identities=15% Similarity=-0.010 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 004791 449 ITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGY 528 (730)
Q Consensus 449 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 528 (730)
.++..+...|.+.|++++|++.|++.++... -+..+|..+..++.+.|++++|+..|+++.+..+. +..++..+..+|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHH
Confidence 3555666777777777777777777766532 25667777777777777777777777777776544 556677777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCH
Q 004791 529 CKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK----EGDF 604 (730)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~ 604 (730)
...|++++|...+++.++.. +.+......+...+.+.+..+.+..+........ ++...++ ++..+.. .+..
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHH
Confidence 77788888888777777654 3344444444444445555455544444444432 1111111 1111111 1112
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004791 605 DHAHRLLDQMVSLGLKP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE 652 (730)
Q Consensus 605 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 652 (730)
+.+...+...... .| ...+|..+...|...|++++|.+.|++.+..
T Consensus 192 ~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 192 ERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2222222222111 11 2345667788888888888888888888874
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=2.8e-07 Score=81.75 Aligned_cols=141 Identities=11% Similarity=-0.030 Sum_probs=90.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004791 561 DGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLD 640 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 640 (730)
..+...|++++|++.|+++. +|+..+|..++.+|...|++++|++.|++.++.++. +...|..+..+|.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence 34456677777777776532 456666777777777777777777777777775433 5667777777777777777
Q ss_pred HHHHHHHHHHHCC------------C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 004791 641 EAEDLIVKMNREG------------I--VP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHLSN 705 (730)
Q Consensus 641 ~A~~~~~~m~~~g------------~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~~ 705 (730)
+|++.|++..... . .. ...++..+..++.+.|++++|.+.+++..+....++.......+..+.+
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~ 167 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWK 167 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh
Confidence 7777777766421 0 00 1345666777788888888888888887765455544444444444443
Q ss_pred C
Q 004791 706 K 706 (730)
Q Consensus 706 ~ 706 (730)
.
T Consensus 168 ~ 168 (192)
T d1hh8a_ 168 Q 168 (192)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=9.8e-07 Score=78.12 Aligned_cols=123 Identities=14% Similarity=0.024 Sum_probs=89.2
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 004791 246 LGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKS 325 (730)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (730)
..+...|++++|++.|+++.. ++..+|..+..+|...|++++|++.|++..+.+ +.+...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~----~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQD----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence 346677888888888877643 667778888888888888888888888888765 446778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 326 EALEFFNEMSARGCEPN---------------VHTYTVLIDCLCKENKVDEASELLNRMLEKG 373 (730)
Q Consensus 326 ~A~~~~~~m~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 373 (730)
+|++.|++.+....... ..++..+..++.+.|++++|.+.+....+..
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888887765321100 2344556667777788888887777776653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.62 E-value=6.5e-05 Score=70.13 Aligned_cols=222 Identities=13% Similarity=-0.024 Sum_probs=116.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 004791 451 YNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCK----RGRVEEAQVLFDSLEKKGIKAGEVIYTALID 526 (730)
Q Consensus 451 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 526 (730)
+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+....+.+ +......+..
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 3344444444455555555555544443 23333333333333 334555555555555443 2223333333
Q ss_pred HHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004791 527 GYCK----EGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLY----RERKVQEALLLVEKMTKMGVKPTVYTYTILIEEV 598 (730)
Q Consensus 527 ~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~----~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 598 (730)
.+.. .++.+.|...++...+.+. ......+...+. .......+...+...... .+...+..+...+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLY 152 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhh
Confidence 3222 3445556666666555441 122222222222 233455556666555543 3445555565555
Q ss_pred HH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004791 599 LK----EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS----IGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH 670 (730)
Q Consensus 599 ~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 670 (730)
.. ..+...+...++...+.| +......+...|.. ..++++|..+|++..+.| +...+..|+..|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYN 226 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred ccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHc
Confidence 54 345666677777666643 45555556555554 457888888888887765 45566667776664
Q ss_pred ----cCCHHHHHHHHHHHHHcCCC
Q 004791 671 ----LGLIYSAFDVLKRMFDAGCE 690 (730)
Q Consensus 671 ----~g~~~~A~~~~~~m~~~g~~ 690 (730)
..+.++|.++|++..+.|..
T Consensus 227 G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCccCHHHHHHHHHHHHHCcCH
Confidence 33677788888888777643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=6.4e-07 Score=71.97 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=69.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGL 673 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 673 (730)
-+..+...|++++|+.+|+++++..+. +...|..+..+|.+.|++++|+..+++..+.+ +.+...|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 345566777777777777777775433 66677777777777777777777777777643 3357777777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHH
Q 004791 674 IYSAFDVLKRMFDAGCEPSHHTYA 697 (730)
Q Consensus 674 ~~~A~~~~~~m~~~g~~p~~~~~~ 697 (730)
+++|+..|++.++. .|+...+.
T Consensus 87 ~~~A~~~~~~a~~~--~p~~~~~~ 108 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH--EANNPQLK 108 (117)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHH
Confidence 77777777777753 55554443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.54 E-value=2.3e-06 Score=81.72 Aligned_cols=194 Identities=11% Similarity=0.003 Sum_probs=127.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 004791 490 IDTLCKRGRVEEAQVLFDSLEKK----GI-KAGEVIYTALIDGYCKEGKIDDAHSLLERMLSD----DC-LPNSYTYNAL 559 (730)
Q Consensus 490 i~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~l 559 (730)
...|...+++++|.+.|.++.+. +- ..-..+|..+..+|.+.|++++|.+.+++.... +. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44577777888888877776543 11 112346777888888888888888888876542 10 0113455566
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHH
Q 004791 560 IDGLY-RERKVQEALLLVEKMTK----MGVKP-TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPD------VYTYT 627 (730)
Q Consensus 560 i~~~~-~~~~~~~A~~~~~~m~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~ 627 (730)
...|. ..|++++|++.+++..+ .+.++ -..++..++..+...|++++|.+.|+++........ ...+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 66664 46899999999988764 22111 134577788899999999999999999887532211 12344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 004791 628 AFIQAYCSIGKLDEAEDLIVKMNREGIVPD------SVTYTLLICAYAH--LGLIYSAFDVLKRMF 685 (730)
Q Consensus 628 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~l~~~~~~--~g~~~~A~~~~~~m~ 685 (730)
..+.++...|+++.|.+.++++.+.. |+ ......++.++.. .+.+++|+..|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~--~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 55566778899999999999988642 32 2344556666654 345888888887654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.7e-06 Score=69.42 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=71.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 638 (730)
-...+...|++++|+.+|++.++.. +.+...|..+..++...|++++|++.++++++.++. +...|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 3455667777777777777777654 556777777777777778888888777777776533 67777777777778888
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004791 639 LDEAEDLIVKMNREGIVP-DSVTYTLL 664 (730)
Q Consensus 639 ~~~A~~~~~~m~~~g~~~-~~~~~~~l 664 (730)
+++|+..+++..+. .| +...+..+
T Consensus 87 ~~~A~~~~~~a~~~--~p~~~~~~~~l 111 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH--EANNPQLKEGL 111 (117)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888888877763 34 34444333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.52 E-value=0.00014 Score=67.79 Aligned_cols=145 Identities=10% Similarity=-0.047 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 004791 497 GRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYC----KEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYR----ERK 568 (730)
Q Consensus 497 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~ 568 (730)
.+.+.|...++...+.|.. .....+...+. .......+...+...... .+...+..|...+.. ..+
T Consensus 88 ~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~ 161 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKD 161 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCC
T ss_pred hhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccc
Confidence 3455555555555554422 22222222222 233455556666655553 345556666666653 445
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 004791 569 VQEALLLVEKMTKMGVKPTVYTYTILIEEVLK----EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS----IGKLD 640 (730)
Q Consensus 569 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 640 (730)
...+...++...+.| +......+...|.. ..++++|+..|++..+.| +...+..|..+|.. ..+.+
T Consensus 162 ~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~ 235 (265)
T d1ouva_ 162 LKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEK 235 (265)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCST
T ss_pred cccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHH
Confidence 667777777776644 45555556655554 567888888888888865 45566677777764 33678
Q ss_pred HHHHHHHHHHHCC
Q 004791 641 EAEDLIVKMNREG 653 (730)
Q Consensus 641 ~A~~~~~~m~~~g 653 (730)
+|.++|++..+.|
T Consensus 236 ~A~~~~~kAa~~g 248 (265)
T d1ouva_ 236 QAIENFKKGCKLG 248 (265)
T ss_dssp THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc
Confidence 8888888887766
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.3e-06 Score=73.11 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=56.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004791 560 IDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKL 639 (730)
Q Consensus 560 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 639 (730)
...|.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|++.|+++++..+. +...|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 344556666666666666666654 445666666666666666666666666666664322 455666666666666666
Q ss_pred HHHHHHHHHHHH
Q 004791 640 DEAEDLIVKMNR 651 (730)
Q Consensus 640 ~~A~~~~~~m~~ 651 (730)
++|...+++...
T Consensus 95 ~eA~~~~~~a~~ 106 (159)
T d1a17a_ 95 RAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666666
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.1e-06 Score=73.41 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=86.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHL 671 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 671 (730)
...+..|.+.|++++|+..|+++++..+. +...|..+..+|...|++++|+..|+++++.. +.+..+|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 33466788999999999999999997644 88899999999999999999999999999854 33678999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH
Q 004791 672 GLIYSAFDVLKRMFDAGCEPSHH 694 (730)
Q Consensus 672 g~~~~A~~~~~~m~~~g~~p~~~ 694 (730)
|++++|++.+++.... .|+..
T Consensus 92 g~~~eA~~~~~~a~~~--~p~~~ 112 (159)
T d1a17a_ 92 GKFRAALRDYETVVKV--KPHDK 112 (159)
T ss_dssp TCHHHHHHHHHHHHHH--STTCH
T ss_pred CCHHHHHHHHHHHHHc--CCCCH
Confidence 9999999999999985 45443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=2.4e-06 Score=81.57 Aligned_cols=60 Identities=10% Similarity=-0.087 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004791 171 YNTLLMQLSKFHLVDEMKRVYLEMLDN----MVVPN-IYTFNTMINGCCKVGNVGEAELYVSKIV 230 (730)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 230 (730)
|......|...|++++|...|.++.+. +-.++ ..+|..+..+|.+.|++++|...+.+..
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~ 104 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence 444445566666666666666666542 11111 1245555555555666666655555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.42 E-value=1.7e-06 Score=77.49 Aligned_cols=99 Identities=17% Similarity=0.048 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 551 PNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFI 630 (730)
Q Consensus 551 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 630 (730)
|+...+......+.+.|++++|+..|+++++.. +.+...|..++.+|.+.|++++|+..|+++++..+. +..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 677778888899999999999999999998875 668889999999999999999999999999886433 677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.+|...|++++|+..|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999876
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=2.7e-06 Score=76.04 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=90.2
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004791 516 AGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILI 595 (730)
Q Consensus 516 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 595 (730)
|+...+...+..|.+.|++++|+..|++.+... |.+...|..+..+|.+.|++++|+..|+++++.. +-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 566777888999999999999999999999876 6788899999999999999999999999999865 45788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 004791 596 EEVLKEGDFDHAHRLLDQMVSL 617 (730)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~ 617 (730)
.+|...|++++|+..|+++++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998874
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=9.7e-07 Score=71.05 Aligned_cols=107 Identities=11% Similarity=0.099 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004791 592 TILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK---LDEAEDLIVKMNREGIVPD-SVTYTLLICA 667 (730)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~ 667 (730)
..+++.+...+++++|.+.|++.+..++. +..++..++.++.+.++ +++|+.+++++...+..|+ ..+|..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 34566677777888888888888776533 66777777777766443 4457888887776432222 2366777788
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004791 668 YAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIK 701 (730)
Q Consensus 668 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 701 (730)
|.+.|++++|++.|+++++. .|+..-...+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~~ 113 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNNQAKELER 113 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence 88888888888888888773 676655554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.31 E-value=3e-06 Score=67.19 Aligned_cols=89 Identities=10% Similarity=-0.060 Sum_probs=63.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 594 LIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGL 673 (730)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~ 673 (730)
++..+.+.|++++|+..|+++++..+. +...|..++.++.+.|++++|+..+++..+.. +.+...|..++..|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 455666777777777777777775433 56777777777777777777777777777743 2247777777777777777
Q ss_pred HHHHHHHHHHH
Q 004791 674 IYSAFDVLKRM 684 (730)
Q Consensus 674 ~~~A~~~~~~m 684 (730)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=0.0024 Score=60.42 Aligned_cols=135 Identities=15% Similarity=0.094 Sum_probs=64.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 004791 237 DTFTYTSLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIF 316 (730)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 316 (730)
|..-...+++.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHH
Confidence 333344455555566666666666655443 4455566666666666666555431 3455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 004791 317 GLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEG 392 (730)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 392 (730)
.+.+.....-| .+...+...+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 66555444332 1112222234444455666666666666666666665432 1234555666666666643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.21 E-value=6.3e-06 Score=65.28 Aligned_cols=89 Identities=13% Similarity=-0.013 Sum_probs=55.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004791 559 LIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGK 638 (730)
Q Consensus 559 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 638 (730)
+...+.+.|++++|+..|++.++.. +.+...|..++.++.+.|++++|+..|+++++..+. +...|..++.+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 3444556666666666666666544 335666666666666666666666666666665322 55666666666666666
Q ss_pred HHHHHHHHHHH
Q 004791 639 LDEAEDLIVKM 649 (730)
Q Consensus 639 ~~~A~~~~~~m 649 (730)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=0.0018 Score=61.23 Aligned_cols=41 Identities=10% Similarity=0.171 Sum_probs=21.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhH
Q 004791 493 LCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDD 536 (730)
Q Consensus 493 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 536 (730)
+.+.+++......++.....+ +..+.+++...|...++++.
T Consensus 258 ~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 258 FSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHH
Confidence 334444444455555544433 23456666666666666443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=4.6e-06 Score=66.97 Aligned_cols=97 Identities=11% Similarity=0.086 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEG---DFDHAHRLLDQMVSLGLKPD-VYTYTAFIQAY 633 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 633 (730)
.++..+...+++++|.+.|++.+..+ +.+..++..+..++.+.+ ++++|++++++++..+..|+ ..+|..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45556666677777777777777655 456667777777766544 34457777777766543333 23566677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 634 CSIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 634 ~~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
.+.|++++|++.|+++++ +.|+
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~ 104 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQ 104 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHhhhHHHHHHHHHHHH--hCcC
Confidence 777777777777777777 3454
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3.6e-05 Score=66.10 Aligned_cols=75 Identities=16% Similarity=0.065 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLICA 667 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~ 667 (730)
+|+.+..+|.+.|++++|+..+++.++..+. +...|..++.+|...|++++|+..|+++.+. .| |..+...+..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4455566666666666666666666665422 5666666666666666666666666666663 34 34444444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=2.4e-05 Score=63.59 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHH
Q 004791 591 YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGI-VPD-----SVTYTLL 664 (730)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~-----~~~~~~l 664 (730)
+..++..+...|++++|++.|++.++.++. +...|..+..+|.+.|++++|++.++++++..- .+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 345566777777777777777777776433 667777777777777888888877777765210 001 2456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004791 665 ICAYAHLGLIYSAFDVLKRMFDAGCEPSHHT 695 (730)
Q Consensus 665 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 695 (730)
+..+...+++++|++.|++.+.. .|+...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 114 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDV 114 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--CCCHHH
Confidence 77777778888888888777653 344433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=3.5e-05 Score=66.22 Aligned_cols=77 Identities=6% Similarity=-0.098 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 624 YTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 624 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
.+|+.+..+|.+.|++++|+..+++.++.. +.+..+|..++.+|...|++++|+..|++.++. .|+.......+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 467788899999999999999999999854 337999999999999999999999999999885 56554444444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.07 E-value=5.8e-05 Score=63.41 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004791 624 YTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIK 701 (730)
Q Consensus 624 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 701 (730)
.+|..+..+|.+.|++++|++.++++++.+ +.+..+|..++.++...|++++|+..|++.++. .|+.......+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l~ 142 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYE 142 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 467778888999999999999999988854 336889999999999999999999999999874 566554443333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.5e-06 Score=90.01 Aligned_cols=224 Identities=9% Similarity=-0.055 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhCCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhCCChhHHHHHHHH
Q 004791 396 AALQILDLMKSNNCSPN-ARTYNELICGFCKRKNVHRAMSLLNELLEQNLSPTL-ITYNSLIYGQCREGHLDSAYKVLHL 473 (730)
Q Consensus 396 ~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~ 473 (730)
+|.+.|++..+. .|+ ...+..+..++...+++++| +++++... |+. ...+.....+ ...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw--~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW--NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH--HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH--HHHHHHHHHHHHH
Confidence 566777776654 233 44555566666666666655 55554421 111 0111100000 1113344555554
Q ss_pred HHhCCCCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 004791 474 INESGLVPDQFTYSVFID--TLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLP 551 (730)
Q Consensus 474 ~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 551 (730)
..+....++......... .....+.++.++..+....+..+ ++...+..+...+.+.|+.++|...+.+.....
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 444322222211111111 11122333333333333222221 133445555555555666666555555444321
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 552 NSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQ 631 (730)
Q Consensus 552 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 631 (730)
...++..+...+...|++++|...|++..+.. +.+...|+.++..+...|+..+|...|.+.+... .|-..++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 12344455555555566666666666555543 3344555566666666666666666665555543 234445555554
Q ss_pred HHH
Q 004791 632 AYC 634 (730)
Q Consensus 632 ~~~ 634 (730)
.+.
T Consensus 229 ~~~ 231 (497)
T d1ya0a1 229 ALS 231 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=4e-05 Score=62.19 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHHH
Q 004791 557 NALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLK-PD-----VYTYTAFI 630 (730)
Q Consensus 557 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-----~~~~~~l~ 630 (730)
..+...+...|++++|+..|.+.++.+ +.+...+..+..+|.+.|++++|++.++++++.... +. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344555666666666666666666654 445666666666677777777777776666652111 01 23555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~~ 651 (730)
..+...+++++|++.|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 667777777777777777665
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=3.7e-06 Score=86.84 Aligned_cols=276 Identities=10% Similarity=-0.079 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 004791 430 HRAMSLLNELLEQNLSPT-LITYNSLIYGQCREGHLDSAYKVLHLINESGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDS 508 (730)
Q Consensus 430 ~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 508 (730)
-+|.+.|+++.+. .|+ ...+..+..++...|++++| +++++... |+.. ...-+....-...+..+.+.++.
T Consensus 3 ~eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a-~~~~~e~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 3 LQSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYA-LDKKVEQDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHH-HHHTHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhH-HHHhHHHHHHHHHHHHHHHHHHH
Confidence 3688888888763 233 34566677777777777766 55655431 2211 10001111111123456666666
Q ss_pred HHHcCCCcCHHHHHHHH--HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004791 509 LEKKGIKAGEVIYTALI--DGYCKEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKP 586 (730)
Q Consensus 509 ~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 586 (730)
..+....++..-..... ..+...+.++.|+..+....... +++...+..+...+.+.|+.++|...+.......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 66544333332222211 12223455566665555544433 4456677778888888888888888887766532
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLIC 666 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 666 (730)
...++..++..+...|++++|+..|+++.+..+. +...|+.|+..+...|+..+|...|.+..... +|-..++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 2356777888889999999999999999886533 66789999999999999999999999988754 566788888877
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCChhhhh-hhccchhhhHHHHhhc
Q 004791 667 AYAHLGLIYSAFDVLKRMFDAGCEPSH----HTYAFLIKHLSNKKVDERK-QQCDGILFGFKCLISQ 728 (730)
Q Consensus 667 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~l~~~~~~e~~-~~~~~~l~~~~~~~~~ 728 (730)
.+.+..+..++. ...+.. ..+..+...+......+.. .-.+.++..++..+.+
T Consensus 229 ~~~~~~~~~~~~---------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 286 (497)
T d1ya0a1 229 ALSKALESRDEV---------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQ 286 (497)
T ss_dssp HHHHHTTSCCCC---------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhhhhhh---------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc
Confidence 765543221111 011111 1233333334444444333 3456677777766654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.93 E-value=0.00037 Score=59.42 Aligned_cols=93 Identities=11% Similarity=0.003 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 590 TYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYA 669 (730)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 669 (730)
+|..+..+|.+.|++++|+..+++.++..+. +...|..++.++...|++++|...|+++.+.. +.+......+.....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3445566666677777777777776665432 56666666677777777777777777776632 224444444444433
Q ss_pred hcCCH-HHHHHHHHHH
Q 004791 670 HLGLI-YSAFDVLKRM 684 (730)
Q Consensus 670 ~~g~~-~~A~~~~~~m 684 (730)
..+.. +...+.+.+|
T Consensus 144 ~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 144 KAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 33322 2233444444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.90 E-value=0.00015 Score=60.73 Aligned_cols=74 Identities=16% Similarity=0.097 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 004791 589 YTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVP-DSVTYTLLI 665 (730)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~ 665 (730)
.+|..+..+|.+.|++++|++.++++++.++. +..+|..++.++...|++++|+..|++..+ +.| |..+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~ 142 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYE 142 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 46777888899999999999999999887533 788999999999999999999999999998 446 455544443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.86 E-value=0.00011 Score=62.92 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 623 VYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 623 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
...|..+..++.+.|++++|+..++++++.. +.+..+|..++.+|...|++++|+..|++.++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3345556666666666666666666666533 224566666666666666666666666666653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.83 E-value=4.3e-05 Score=63.48 Aligned_cols=112 Identities=14% Similarity=0.072 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004791 567 RKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK----------EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI 636 (730)
Q Consensus 567 ~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 636 (730)
+.+++|+..|+..++.. |.+..++..+..++.. .+.+++|++.|+++++.++. +..+|..++.+|...
T Consensus 11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHc
Confidence 34455555555554433 3344444444444432 23345566666666664332 555666666666544
Q ss_pred C-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004791 637 G-----------KLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAG 688 (730)
Q Consensus 637 g-----------~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 688 (730)
| ++++|.+.|++..+ +.|+...|...+.. ...|.+++.+..+.|
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~------~~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM------TAKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH------HHTHHHHHHHHHHSS
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHH------HHHHHHHHHHHHHHh
Confidence 3 24666666666666 34544433322222 234455555555544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=0.00034 Score=60.08 Aligned_cols=126 Identities=17% Similarity=0.093 Sum_probs=85.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004791 558 ALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIG 637 (730)
Q Consensus 558 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 637 (730)
.........|++++|...|.+.+... +... +......+-+...-..+.. .....+..++.++...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 34455677888888888888888742 1100 0000000001111111111 02346778899999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHHHH
Q 004791 638 KLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMF-----DAGCEPSHHTYAF 698 (730)
Q Consensus 638 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~ 698 (730)
++++|+..++++.+.. +-+...|..++.+|...|+.++|++.|+++. +.|+.|+..+-..
T Consensus 82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 9999999999999854 3478999999999999999999999999984 4699999876443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.00015 Score=62.16 Aligned_cols=87 Identities=11% Similarity=0.009 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004791 587 TVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLIC 666 (730)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 666 (730)
+...|..+..++.+.|++++|+..++++++..+. +...|..++.+|...|++++|+..|+++.+.. +.+......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445566667777777777777777777775433 66677777777777777777777777777742 224555555555
Q ss_pred HHHhcCCHH
Q 004791 667 AYAHLGLIY 675 (730)
Q Consensus 667 ~~~~~g~~~ 675 (730)
+..+.....
T Consensus 154 ~~~~l~~~~ 162 (169)
T d1ihga1 154 VKQKIKAQK 162 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544443333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.74 E-value=0.00026 Score=60.41 Aligned_cols=94 Identities=10% Similarity=0.050 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004791 555 TYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYC 634 (730)
Q Consensus 555 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 634 (730)
+|+.+..+|.+.|++++|+..+++.++.. +.+...|..++.++...|++++|++.|+++++..+. +......+..+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 45667777888999999999999988865 667888888899999999999999999999886533 5556655555544
Q ss_pred hcCCHH-HHHHHHHHHH
Q 004791 635 SIGKLD-EAEDLIVKMN 650 (730)
Q Consensus 635 ~~g~~~-~A~~~~~~m~ 650 (730)
+.+... ...+++..|.
T Consensus 144 ~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 444332 2334444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.56 E-value=0.00083 Score=57.53 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhh
Q 004791 273 EVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVGRKSEALEFFNEMSA-----RGCEPNVHT 345 (730)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 345 (730)
...+..++..+.+.|++++|+..++++.+.+ +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3456667777777777777777777777664 44667777777777777777777777776633 466666543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.55 E-value=0.00012 Score=60.61 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=81.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 004791 598 VLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSI----------GKLDEAEDLIVKMNREGIVP-DSVTYTLLIC 666 (730)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~ 666 (730)
|-+.+.+++|++.|++.++..+. +...+..+..+|... +.+++|+..++++++. .| +..+|..++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHH
Confidence 45677899999999999997644 788888888888743 4568999999999984 45 6889999999
Q ss_pred HHHhcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004791 667 AYAHLGL-----------IYSAFDVLKRMFDAGCEPSHHTYAFLIKHLS 704 (730)
Q Consensus 667 ~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l~ 704 (730)
+|...|+ +++|.+.|++.++ +.|+...|..-+....
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHHH
Confidence 9987654 6889999999987 4888888876665554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.54 E-value=8.1e-05 Score=68.63 Aligned_cols=121 Identities=13% Similarity=0.030 Sum_probs=76.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004791 564 YRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAE 643 (730)
Q Consensus 564 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 643 (730)
.+.|++++|+..+++.++.. +.|...+..++..++..|++++|.+.++...+..+. +...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 45688888888888888765 567788888888888888888888888888875322 3445555555554444333332
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004791 644 DLIVKMNREGIVP-DSVTYTLLICAYAHLGLIYSAFDVLKRMFDA 687 (730)
Q Consensus 644 ~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 687 (730)
.-.......+ .| +...+......+...|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2211111111 12 2333444556677788888888888888764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.44 E-value=0.00012 Score=67.38 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=27.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004791 530 KEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKM 582 (730)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 582 (730)
+.|++++|+..+++.++.. |.|...+..+...++..|++++|.+.++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455555555555555543 444555555555555555555555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.35 E-value=0.00069 Score=56.78 Aligned_cols=97 Identities=20% Similarity=0.231 Sum_probs=69.2
Q ss_pred HHHHH--HHHHHHcCCHHHHHHHHHHHHHCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 004791 590 TYTIL--IEEVLKEGDFDHAHRLLDQMVSLGLK-P----------DVYTYTAFIQAYCSIGKLDEAEDLIVKMNRE---- 652 (730)
Q Consensus 590 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~-p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---- 652 (730)
+|..+ +..+...|++++|++.|++.++.... | ....|+.+..+|.+.|++++|.+.+++.++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 44555678888888888877762111 1 1456888889999999999999998887752
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 653 -GIVPD-----SVTYTLLICAYAHLGLIYSAFDVLKRMFD 686 (730)
Q Consensus 653 -g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 686 (730)
...++ ...+..++.+|...|++++|+..|++.++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 23567788999999999999999999763
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.09 E-value=0.0051 Score=51.17 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=63.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC--CCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC--
Q 004791 561 DGLYRERKVQEALLLVEKMTKM--GVKP---------TVYTYTILIEEVLKEGDFDHAHRLLDQMVSL-----GLKPD-- 622 (730)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~m~~~--~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-- 622 (730)
..+...|++++|+..|++.++. ..+. ....|+.+..+|...|++++|.+.+++.++. ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3445567777777777777642 1110 1356777888888888888888888887752 11222
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 623 ---VYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 623 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
...+..+..+|...|++++|++.|++..+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22567788999999999999999999875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.01 Score=44.17 Aligned_cols=59 Identities=22% Similarity=0.144 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004791 593 ILIEEVLKEGDFDHAHRLLDQMVSLG-----LKP-DVYTYTAFIQAYCSIGKLDEAEDLIVKMNR 651 (730)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 651 (730)
.++..+.+.|++++|+..|+++++.. ..+ ...++..+..++.+.|++++|++.++++++
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 44555555555555555555554320 011 133455555556666666666666666555
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.53 E-value=0.036 Score=44.20 Aligned_cols=81 Identities=12% Similarity=0.011 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 004791 602 GDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS----IGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAH----LGL 673 (730)
Q Consensus 602 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~ 673 (730)
.+.++|.+.+++..+.| +......|...|.. ..+.++|.++|++..+.| +......|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45556666666665544 33444444444433 235666666666666654 34444455555544 345
Q ss_pred HHHHHHHHHHHHHcC
Q 004791 674 IYSAFDVLKRMFDAG 688 (730)
Q Consensus 674 ~~~A~~~~~~m~~~g 688 (730)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666666655
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.015 Score=43.17 Aligned_cols=63 Identities=8% Similarity=-0.036 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004791 276 YTNLIHGLCEAKRVDEALDLFRRMGEDD-----CRPT-VRTYTVVIFGLCRVGRKSEALEFFNEMSARG 338 (730)
Q Consensus 276 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 338 (730)
+-.+...+.+.|++++|...|++..+.. ..++ ..++..+..++.+.|++++|++.++++++..
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3345555555666666666555554320 0111 3355556666666666666666666666553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.37 E-value=0.053 Score=43.13 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=49.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 004791 566 ERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLK----EGDFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCS----IG 637 (730)
Q Consensus 566 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 637 (730)
..+.++|++++++..+.| +......|...|.. ..+.++|.++|++..+.| +......|...|.. ..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 345666666666666654 33444445555543 346677777777777654 34445555555544 34
Q ss_pred CHHHHHHHHHHHHHCC
Q 004791 638 KLDEAEDLIVKMNREG 653 (730)
Q Consensus 638 ~~~~A~~~~~~m~~~g 653 (730)
+.++|.+++++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6777777777777766
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.35 E-value=0.38 Score=36.32 Aligned_cols=139 Identities=13% Similarity=0.092 Sum_probs=87.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004791 530 KEGKIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTKMGVKPTVYTYTILIEEVLKEGDFDHAHR 609 (730)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 609 (730)
-.|.+++..+++.+.... .+..-||=++--....-+-+...+.++..-+. -| ...++++.....
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHHH
Confidence 356666666666666553 23444444443333444444444444444321 01 113444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004791 610 LLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGC 689 (730)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 689 (730)
.+-.+ ..+.......++.+.++|+-+.-.++.+.+.+.+ ++++.....+..+|.+.|...++-+++.+.-++|+
T Consensus 78 C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 44333 2244556677788889999999999988877765 78888888999999999999999999999888876
Q ss_pred C
Q 004791 690 E 690 (730)
Q Consensus 690 ~ 690 (730)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.49 E-value=0.19 Score=38.50 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004791 620 KPDVYTYTAFIQAYCSIG---KLDEAEDLIVKMNREGIVPD-SVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHT 695 (730)
Q Consensus 620 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 695 (730)
.+...+--.+.+++.+.. +.++|+.++++..+.+ +.+ ...+..|.-+|.+.|++++|.++++.+++. .|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcHH
Confidence 345556666666666543 3456777777777643 223 355666777777777777777777777763 666554
Q ss_pred HHHHH
Q 004791 696 YAFLI 700 (730)
Q Consensus 696 ~~~l~ 700 (730)
...+-
T Consensus 109 A~~L~ 113 (124)
T d2pqrb1 109 VGALK 113 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.90 E-value=0.91 Score=34.21 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004791 311 YTVVIFGLCRVGRKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGL 374 (730)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 374 (730)
.+..++.+.+.|+-+.-.++++++.+ +-++++.....+..+|-+.|...++-+++.+.-++|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 33344445555555555555555444 2344555555555555555555555555555555543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=3.3 Score=40.15 Aligned_cols=52 Identities=4% Similarity=-0.154 Sum_probs=36.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004791 630 IQAYCSIGKLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRM 684 (730)
Q Consensus 630 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 684 (730)
+..+...|+..+|...|..+.+. .+......+.....+.|.++.|+....+.
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 45566778888888888777653 34556666777777888888888766554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.99 E-value=0.39 Score=36.65 Aligned_cols=71 Identities=8% Similarity=0.015 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004791 585 KPTVYTYTILIEEVLKEG---DFDHAHRLLDQMVSLGLKPDVYTYTAFIQAYCSIGKLDEAEDLIVKMNREGIVPD 657 (730)
Q Consensus 585 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 657 (730)
.+...+--....++.+.. ++++++.+++++.+.+..-....+..|.-+|.+.|++++|.+.++.+++ +.|+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~ 105 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 105 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCC
Confidence 355556555666666554 4567888888877643221134566777778888888888888888887 4564
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.02 E-value=0.7 Score=32.99 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004791 638 KLDEAEDLIVKMNREGIVPDSVTYTLLICAYAHLGLIYSAFDVLKRMFDAGCEPSHHTYAFLIKHL 703 (730)
Q Consensus 638 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~l 703 (730)
+.=++.+-++.+...++.|++....+.+.+|.+.+++.-|+++++-...+ +.++...|..++.-+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 34455566666666667777777777777777777777777777766543 333445566555443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.99 E-value=6.1 Score=28.05 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004791 533 KIDDAHSLLERMLSDDCLPNSYTYNALIDGLYRERKVQEALLLVEKMTK 581 (730)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 581 (730)
+.-++.+-++.+...+..|++....+.+.+|.+.+++.-|.++++....
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555666666666667777777777777777777777777766554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=80.12 E-value=26 Score=33.33 Aligned_cols=352 Identities=11% Similarity=0.023 Sum_probs=194.7
Q ss_pred HHHHHHHhcCChhHHHHHHHhchhCCCCcChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 004791 243 SLILGYCRNKDVEKGFRVFMMMPKKGCRRNEVSYTNLIHGLCEAKRVDEALDLFRRMGEDDCRPTVRTYTVVIFGLCRVG 322 (730)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 322 (730)
..+..+.+.+++...+..+. ..+.+...-...+.+....|+.++|.+.+..+-..|..
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~----------------- 134 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS----------------- 134 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------
T ss_pred HHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------
Confidence 34556667777766554432 12344555556677777788888887777766544311
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 004791 323 RKSEALEFFNEMSARGCEPNVHTYTVLIDCLCKENKVDEASELLNRMLEKGLFPNVVTYNALIDGYCKEGLMEAALQILD 402 (730)
Q Consensus 323 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 402 (730)
..+.+..+|..+.+.|. .+...+-.-+......|+...|..+...+... ........+........+.. ..
T Consensus 135 ~p~~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~~~---~~- 205 (450)
T d1qsaa1 135 QPNACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTVLT---FA- 205 (450)
T ss_dssp CCTHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGHHH---HH-
T ss_pred CchHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhHHH---HH-
Confidence 11223334444444433 24444445556666678888777776543221 22333444444332222222 11
Q ss_pred HHHhCCCCCChhcHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCChhhHHHH----HHHHHhCCChhHHHHHHHHHHh
Q 004791 403 LMKSNNCSPNARTYNELICGFCK--RKNVHRAMSLLNELLEQNLSPTLITYNSL----IYGQCREGHLDSAYKVLHLINE 476 (730)
Q Consensus 403 ~m~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~ 476 (730)
... ..+......+..++.+ ..+.+.|..++......... +...+..+ .......+..+.+...+.....
T Consensus 206 --~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 280 (450)
T d1qsaa1 206 --RTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM 280 (450)
T ss_dssp --HHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH
T ss_pred --hcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc
Confidence 111 2233333333333332 35778888888877654322 22222222 2222345667778877777666
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 004791 477 SGLVPDQFTYSVFIDTLCKRGRVEEAQVLFDSLEKKGIKAGEVIYTALIDGYCKEGKIDDAHSLLERMLSDDCLPNSYTY 556 (730)
Q Consensus 477 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 556 (730)
.+ .+.......+......++...+...+..+... ........-=+..++...|+.++|...|...... ++ |
T Consensus 281 ~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---f 351 (450)
T d1qsaa1 281 RS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---F 351 (450)
T ss_dssp TC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---H
T ss_pred cc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---h
Confidence 54 34444444555566778999888888877543 2223344455678888999999999999988652 33 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC-HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004791 557 NALIDGLYRERKVQEALLLVEKMTKMGV--KPT-VYT---YTILIEEVLKEGDFDHAHRLLDQMVSLGLKPDVYTYTAFI 630 (730)
Q Consensus 557 ~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 630 (730)
-.++.+- +.|..-. +....+ .+. ... -...+..+...|....|...|..+... .+......+.
T Consensus 352 YG~LAa~-~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la 420 (450)
T d1qsaa1 352 YPMVAAQ-RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLA 420 (450)
T ss_dssp HHHHHHH-HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHH
T ss_pred HHHHHHH-HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHH
Confidence 2222221 2221100 000000 001 100 112355677899999999999988754 2455667778
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004791 631 QAYCSIGKLDEAEDLIVKMN 650 (730)
Q Consensus 631 ~~~~~~g~~~~A~~~~~~m~ 650 (730)
....+.|.++.|+....+..
T Consensus 421 ~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 421 RYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCCChhHHHHHHHHHH
Confidence 88899999999998877664
|