Citrus Sinensis ID: 004806
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | 2.2.26 [Sep-21-2011] | |||||||
| O22193 | 826 | U-box domain-containing p | yes | no | 0.990 | 0.874 | 0.646 | 0.0 | |
| Q5XEZ8 | 707 | U-box domain-containing p | no | no | 0.437 | 0.451 | 0.643 | 1e-114 | |
| Q8GWV5 | 760 | U-box domain-containing p | no | no | 0.386 | 0.371 | 0.636 | 8e-95 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.370 | 0.441 | 0.520 | 2e-70 | |
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.400 | 0.442 | 0.484 | 4e-69 | |
| Q8GUG9 | 612 | U-box domain-containing p | no | no | 0.384 | 0.457 | 0.5 | 7e-67 | |
| Q8VZ40 | 632 | U-box domain-containing p | no | no | 0.378 | 0.436 | 0.523 | 3e-65 | |
| Q9C9A6 | 628 | U-box domain-containing p | no | no | 0.386 | 0.449 | 0.498 | 2e-63 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.390 | 0.435 | 0.467 | 7e-63 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.370 | 0.389 | 0.490 | 5e-60 |
| >sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/739 (64%), Positives = 566/739 (76%), Gaps = 17/739 (2%)
Query: 1 MSKIRTSGLDIMLQLKSSLQYFPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDG 60
+ K+R + +D L SS + P ELS SLE C +KIKH+ YE+ SS+I A+RDQ DG
Sbjct: 95 LPKMRDTIVDTFQFLMSSKNHLPDELSPASLEQCLEKIKHLSYEEISSVIDGALRDQRDG 154
Query: 61 VAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMH 120
V PS EILVK+ E+ LRSNQEILIEAVALE+ KE AEQ+E E EF+DQ+I +V RMH
Sbjct: 155 VGPSPEILVKIGENTGLRSNQEILIEAVALERQKEMAEQSENNAEVEFLDQLIVIVNRMH 214
Query: 121 DRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPK 180
+RL++IKQ+Q S V I +DF CPLSLE+MTDPVIV+SGQTYE+AFIK+WIDLGL VCPK
Sbjct: 215 ERLLLIKQTQTSS-VAILADFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPK 273
Query: 181 TRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHI 240
TRQTL HTTLIPNYTVKALIANWCE N+VKLPDP K+ SLN+ SPL DS + +
Sbjct: 274 TRQTLTHTTLIPNYTVKALIANWCETNDVKLPDPNKSTSLNELSPLLSCTDSIPSTGADV 333
Query: 241 FPHTRGNQ-QIMPESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLD 299
N+ S+ T P+ S REG+SP P S S GI+GNG GLD
Sbjct: 334 SARKVSNKSHDWDASSSETGKPS--FSSRATEREGASPSRPASALGASSPGISGNGYGLD 391
Query: 300 IARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVL 359
R SL EDR ++S E + G+ S+S + + +++ + S + H+R+ SA+S +
Sbjct: 392 ARRGSLNDFEDRSNDSRELRTDAPGRSSVSSTTR---GSVENGQTSENHHHRSPSATSTV 448
Query: 360 SNLNLSQGDANETSELSNH-----SDASGE---GKLESQPATTMRRE-PEFPSRVMETRS 410
SN + DANE SE S H SDASGE G L + + RR+ +F + M+ R+
Sbjct: 449 SNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATTSAATRRDLSDFSPKFMDRRT 508
Query: 411 RSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRL 470
R Q WRRPSER RIVS ETR DLS +ETQV+KLVE+LKS+SLDTQR+ATAELRL
Sbjct: 509 RGQ-FWRRPSERLGSRIVSAPSNETRRDLSEVETQVKKLVEELKSSSLDTQRQATAELRL 567
Query: 471 LAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIE 530
LAKHNMDNR+VI N GAI +LV++L+S+++ QENAVTALLNLSINDNNK AIA+A AIE
Sbjct: 568 LAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIE 627
Query: 531 PLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT 590
PLIHVL+ GS EA+EN+AATLFSLSVIE+NKIKIG+SGAIGPLVDLLGNGTPRGKKDAAT
Sbjct: 628 PLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAAT 687
Query: 591 ALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENG 650
ALFNLSI+ ENKA IVQ+GAV++L+DLMDPAAGMVDKAVAVLANLATIP+GR AIGQE G
Sbjct: 688 ALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGG 747
Query: 651 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 710
IP+LVEVVELGSARGKENAAAALLQL TNS RFC+MVLQEGAVPPLVALSQSGTPRA+EK
Sbjct: 748 IPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREK 807
Query: 711 AQALLSYFRNQRHGNAGRG 729
AQALLSYFRNQRHGNAGRG
Sbjct: 808 AQALLSYFRNQRHGNAGRG 826
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/323 (64%), Positives = 262/323 (81%), Gaps = 4/323 (1%)
Query: 410 SRSQVIWRRPSERFV--PRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAE 467
+RS W+ P ER P I+ + ET + S IET+V+KL++DLKS+SLDTQREATA
Sbjct: 386 TRSNTPWKFPEERHWRHPGIIPATVRETGSS-SSIETEVKKLIDDLKSSSLDTQREATAR 444
Query: 468 LRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN 527
+R+LA+++ DNR+VIA C AI LV +L+S++ +IQ +AVT LLNLSINDNNKS IA +
Sbjct: 445 IRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESG 504
Query: 528 AIEPLIHVLQTGS-PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKK 586
AI PLIHVL+TG EA+ N+AATLFSLSVIE+ K +IG +GAI PLVDLLG+G+ GKK
Sbjct: 505 AIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKK 564
Query: 587 DAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIG 646
DAATALFNLSI+HENK ++++AGAV++LV+LMDPA GMV+KAV VLANLAT+ +G++AIG
Sbjct: 565 DAATALFNLSIHHENKTKVIEAGAVRYLVELMDPAFGMVEKAVVVLANLATVREGKIAIG 624
Query: 647 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR 706
+E GIPVLVEVVELGSARGKENA AALLQLCT+S +FC+ V++EG +PPLVAL++SGT R
Sbjct: 625 EEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTAR 684
Query: 707 AKEKAQALLSYFRNQRHGNAGRG 729
KEKAQ LL YF+ R N RG
Sbjct: 685 GKEKAQNLLKYFKAHRQSNQRRG 707
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 348 bits (893), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 180/283 (63%), Positives = 224/283 (79%), Gaps = 1/283 (0%)
Query: 448 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAV 507
KLVEDLKS S + A AE+R L ++++NR+ I CGAI L+ +L+S E QE+AV
Sbjct: 476 KLVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAV 535
Query: 508 TALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 567
TALLNLSI++ NK+ I AIEPL+HVL TG+ A+EN+AA+LFSLSV++ N+ +IG+S
Sbjct: 536 TALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQS 595
Query: 568 -GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVD 626
AI LV+LLG GT RGKKDAA+ALFNLSI H+NKARIVQA AVK+LV+L+DP MVD
Sbjct: 596 NAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEMVD 655
Query: 627 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSM 686
KAVA+LANL+ + +GR AI +E GIP+LVE V+LGS RGKENAA+ LLQLC NS +FC++
Sbjct: 656 KAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTL 715
Query: 687 VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 729
VLQEGA+PPLVALSQSGT RAKEKAQ LLS+FRNQR +G
Sbjct: 716 VLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDARMKKG 758
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/271 (52%), Positives = 197/271 (72%), Gaps = 1/271 (0%)
Query: 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 508
L+ L+S + D QR A E+RLLAK N++NR+ IA GAI +LV++L SS+ + QE+AVT
Sbjct: 328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVT 387
Query: 509 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG 568
ALLNLSI++NNK++I +++AI ++ VL+TGS E RENAAATLFSLSV+++NK+ IG +G
Sbjct: 388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAG 447
Query: 569 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD-LMDPAAGMVDK 627
AI PL++LL +G+PRGKKDAATA+FNL IY NK R V+AG V HL++ L+DP GM+D+
Sbjct: 448 AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDE 507
Query: 628 AVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMV 687
A+++L+ LA P+G++ I + IP LVEV++ GS R +ENAAA L LC+ +
Sbjct: 508 ALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAA 567
Query: 688 LQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718
G L LS++GT RAK KA ++L
Sbjct: 568 KAAGVEDALKELSETGTDRAKRKASSILELM 598
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Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (671), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/299 (48%), Positives = 198/299 (66%), Gaps = 7/299 (2%)
Query: 418 RPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD 477
+P PR VS+ + A+ ++ L+ L + + QR A E+RLLAK N D
Sbjct: 332 KPPSSLRPRKVSSFSSPAEAN------KIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNAD 385
Query: 478 NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ 537
NR+ IA GAI +LV +L + +++IQE++VTALLNLSI +NNK AI +A AI ++ VL+
Sbjct: 386 NRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLK 445
Query: 538 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597
GS EARENAAATLFSLSVI++NK+ IG GAI PLV LL GT RGKKDAATALFNL I
Sbjct: 446 KGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCI 505
Query: 598 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE 656
Y NK + ++AG + L L+ +P +GMVD+A+A+LA L++ P+G+ IG + +P LVE
Sbjct: 506 YQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVE 565
Query: 657 VVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715
+ GS R +ENAAA L+ LC+ + + G + PL+ L+ +GT R K KA LL
Sbjct: 566 FIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLL 624
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 141/282 (50%), Positives = 190/282 (67%), Gaps = 2/282 (0%)
Query: 440 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE 499
SG + +R LV+ L S S + +R A +E+R L+K + DNR++IA GAI +LV++L S +
Sbjct: 327 SGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSED 386
Query: 500 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED 559
QENA+T +LNLSI +NNK I A A+ ++ VL+ G+ EARENAAATLFSLS+ ++
Sbjct: 387 VATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADE 446
Query: 560 NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD 619
NKI IG SGAI LVDLL NGTPRGKKDAATALFNL IYH NK R V+AG V LV ++
Sbjct: 447 NKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLS 506
Query: 620 PAA--GMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677
+ MVD+A+ +L+ LA D + AI + N +P L+ +++ R +ENAAA LL LC
Sbjct: 507 DSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAILLSLC 566
Query: 678 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719
+ + + GAV PL+ LS++GT R K KA +LL R
Sbjct: 567 KRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/277 (52%), Positives = 191/277 (68%), Gaps = 1/277 (0%)
Query: 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ 503
T V L+E L + + + QR A ELRLLAK N+DNR+ IA GAI +LV++L S + + Q
Sbjct: 345 TFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQ 404
Query: 504 ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 563
E++VTALLNLSIN+ NK AI +A AI ++ VL+ GS EARENAAATLFSLSVI++NK+
Sbjct: 405 EHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVA 464
Query: 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAA 622
IG +GAI L+ LL GT RGKKDAATA+FNL IY NK+R V+ G V L L+ D
Sbjct: 465 IGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGG 524
Query: 623 GMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 682
GMVD+A+A+LA L+T +G+ AI + IPVLVE++ GS R +ENAAA L LC +
Sbjct: 525 GMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIGNIE 584
Query: 683 FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719
++ + GA L L+++GT RAK KA +LL +
Sbjct: 585 RLNVAREVGADVALKELTENGTDRAKRKAASLLELIQ 621
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Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/285 (49%), Positives = 191/285 (67%), Gaps = 3/285 (1%)
Query: 438 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 497
DLSG + +R LV L S S++ +R A +E+R L+K + DNR++IA GAI +LV +L S
Sbjct: 335 DLSGDMSAIRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTS 394
Query: 498 S-ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 556
+T+ QENAVT +LNLSI ++NK I A A+ ++ VL+ GS EARENAAATLFSLS+
Sbjct: 395 DGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSL 454
Query: 557 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 616
++NKI IG SGAI LVDLL G+ RGKKDAATALFNL IY NK R V+AG VK LV
Sbjct: 455 ADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVK 514
Query: 617 LMDPAAG--MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674
++ ++ M D+A+ +L+ LA+ + AI + N IP L++ ++ R +ENAAA LL
Sbjct: 515 MLTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILL 574
Query: 675 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719
LC + + + GAV PL+ LS+ GT RAK KA +LL R
Sbjct: 575 CLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLR 619
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (618), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 136/291 (46%), Positives = 200/291 (68%), Gaps = 6/291 (2%)
Query: 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQ 503
++ +L+ L S + +R A E+RLLAK N NR+ IA GAI +LV++L S++++ Q
Sbjct: 356 KIEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQ 415
Query: 504 ENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 562
E+AVT++LNLSI NK I ++ A+ ++HVLQ GS EARENAAATLFSLSVI++NK+
Sbjct: 416 EHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKV 475
Query: 563 KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPA 621
IG +GAI PLV LL G+ RGKKDAATALFNL I+ NK + V+AG V L+ L+ +P
Sbjct: 476 TIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPE 535
Query: 622 AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681
+GMVD+++++LA L++ PDG+ +G + +PVLV+ + GS R KEN+AA L+ LC+ +
Sbjct: 536 SGMVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQ 595
Query: 682 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL---SYFRNQRHGNAGRG 729
+ + G + L+ ++++GT R K KA LL S F +Q+ ++G G
Sbjct: 596 QHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFNDQQKQHSGLG 646
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 233 bits (594), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/273 (49%), Positives = 188/273 (68%), Gaps = 3/273 (1%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
+ L+ L S + QR A AELRLLAK N +NR+ IA GAI +L+ +L SS+ + QE+
Sbjct: 369 IDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEH 428
Query: 506 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 565
AVTALLNLSI+++NK++I ++ A+ ++HVL+ GS EARENAAATLFSLSVI++ K+ IG
Sbjct: 429 AVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIG 488
Query: 566 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGM 624
GAI LV LLG G+ RGKKDAA ALFNL IY NK R ++AG V ++ L+ +P +
Sbjct: 489 GMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGAL 548
Query: 625 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 684
+D+A+A+L+ L++ P+G+ AIG +PVLVE++ G+ R +ENAAA +L LC+
Sbjct: 549 MDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLV 608
Query: 685 SMVLQE--GAVPPLVALSQSGTPRAKEKAQALL 715
+ + G + PL L+ +GT R K KA LL
Sbjct: 609 HLARAQECGIMVPLRELALNGTDRGKRKAVQLL 641
|
E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| 359480587 | 809 | PREDICTED: U-box domain-containing prote | 0.964 | 0.868 | 0.711 | 0.0 | |
| 224081810 | 822 | predicted protein [Populus trichocarpa] | 0.969 | 0.860 | 0.734 | 0.0 | |
| 356565898 | 841 | PREDICTED: U-box domain-containing prote | 0.994 | 0.862 | 0.690 | 0.0 | |
| 356539692 | 838 | PREDICTED: U-box domain-containing prote | 0.994 | 0.865 | 0.690 | 0.0 | |
| 255567955 | 799 | ubiquitin-protein ligase, putative [Rici | 0.909 | 0.829 | 0.684 | 0.0 | |
| 449463969 | 841 | PREDICTED: U-box domain-containing prote | 0.997 | 0.864 | 0.688 | 0.0 | |
| 297825203 | 829 | armadillo/beta-catenin repeat family pro | 0.987 | 0.868 | 0.649 | 0.0 | |
| 28974687 | 790 | arm repeat-containing protein [Nicotiana | 0.941 | 0.868 | 0.660 | 0.0 | |
| 240254516 | 829 | RING/U-box domain and ARM repeat-contain | 0.990 | 0.870 | 0.646 | 0.0 | |
| 334184386 | 826 | RING/U-box domain and ARM repeat-contain | 0.990 | 0.874 | 0.646 | 0.0 |
| >gi|359480587|ref|XP_002283956.2| PREDICTED: U-box domain-containing protein 4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/736 (71%), Positives = 596/736 (80%), Gaps = 33/736 (4%)
Query: 1 MSKIRTSGLDIMLQLKSSLQYFPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDG 60
+SKIRTSGL+I QLKSS Q P ELSS SLE C QK+KHM YEQTS++++EAIR+QV G
Sbjct: 100 ISKIRTSGLEIFQQLKSSHQCLPDELSSASLETCIQKVKHMGYEQTSTILQEAIRNQVQG 159
Query: 61 VAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMH 120
SSE L+K+A+ LSLRSNQE+LIEAVALEKLKENAEQAEK EAE++DQMI+L T+MH
Sbjct: 160 AGSSSESLMKLADCLSLRSNQELLIEAVALEKLKENAEQAEKTEEAEYIDQMITLATQMH 219
Query: 121 DRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPK 180
DR ++ KQSQ C+P+PIP+DFCCPLSLELMTDPVIVASGQTYERAFI+KW+DLGL VCPK
Sbjct: 220 DRFIITKQSQSCNPIPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWLDLGLTVCPK 279
Query: 181 TRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHI 240
TRQTLAHT LIPNYTVKALIANWCE NNVKLPDP K+ +LNQ SPL HA+ APRD+H
Sbjct: 280 TRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPVKSLNLNQSSPLLAHAEPGAPRDAHN 339
Query: 241 FPHTRGNQQIMPESTRSTNSPAKNLVSLNNT-REGSSPLHPHSTSETSYSGIAGNGPGLD 299
PH+R +Q + PESTR T SP NLVS REG+SP HP S SE S SG+AGNG G D
Sbjct: 340 VPHSRASQPMSPESTRFTGSPGNNLVSSGGIHREGTSPSHPRSRSEGSLSGVAGNGHGSD 399
Query: 300 IARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHN--RTASASS 357
I E+RSM+ VGQPS P+ ++S + N RTASAS+
Sbjct: 400 I---------------EDRSMDSVGQPST------LPSRKESSNSTGADANLCRTASAST 438
Query: 358 VLSNLNLSQGDANETSELSNHSDASGEGKLESQPA----TTMRREPEFPSRVMETRSRSQ 413
+ N N S+G + + SD SGE E Q A TT +REP+FP R +ETR+RSQ
Sbjct: 439 LPCNANSSEGTLGADIGVYS-SDVSGEMTPEPQAAAANLTTPQREPDFPLR-LETRARSQ 496
Query: 414 VIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAK 473
+WRRPSERFVPRIVS+ ETRADLSG+E QV++LVEDLKS S++TQREAT+ELRLLAK
Sbjct: 497 AMWRRPSERFVPRIVSSPTTETRADLSGVEAQVQRLVEDLKSESVETQREATSELRLLAK 556
Query: 474 HNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLI 533
HNMDNR+VIANCGAI++LV++L S + K QENAVTALLNLSINDNNK+AIANA AIEPLI
Sbjct: 557 HNMDNRIVIANCGAISLLVNLLRSEDAKAQENAVTALLNLSINDNNKTAIANAQAIEPLI 616
Query: 534 HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 593
HVLQTGSPEA+EN+AATLFSLSVIEDNK IGRSGAI PLV+LLGNGTPRGKKDAATALF
Sbjct: 617 HVLQTGSPEAKENSAATLFSLSVIEDNKAAIGRSGAIAPLVELLGNGTPRGKKDAATALF 676
Query: 594 NLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPV 653
NLSI+HENK RIVQAGAV+HLV+LMDPAAGMVDKAVAVLANLATI +GR AI Q GIPV
Sbjct: 677 NLSIFHENKTRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATITEGRHAIDQAGGIPV 736
Query: 654 LVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQA 713
LVEVVELGSARGKENAAAALLQLC+NSSR C VLQEGAVPPLVALSQSGTPRAKEKAQA
Sbjct: 737 LVEVVELGSARGKENAAAALLQLCSNSSRSCIKVLQEGAVPPLVALSQSGTPRAKEKAQA 796
Query: 714 LLSYFRNQRHGNAGRG 729
LL+ FR+ RH AGRG
Sbjct: 797 LLNCFRS-RH--AGRG 809
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081810|ref|XP_002306495.1| predicted protein [Populus trichocarpa] gi|222855944|gb|EEE93491.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1007 bits (2603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/743 (73%), Positives = 611/743 (82%), Gaps = 36/743 (4%)
Query: 2 SKIRTSGLDIMLQLKSSLQYFPGELSSTSLEL--CSQKIKHMEYEQTSSLIKEAIRDQVD 59
SKI + GL+ LK+S Q P ELSS+SLE+ C QKIK Y QTSS+IKEAI DQ +
Sbjct: 101 SKICSLGLNSFQLLKASHQQLPDELSSSSLEVFNCIQKIKLSGYVQTSSIIKEAISDQEE 160
Query: 60 GVAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRM 119
GV PSSEILVK+++SL LRSNQEILIEAVALEKLKENAEQAEK EAEF+DQ+I+LVTRM
Sbjct: 161 GVGPSSEILVKISDSLCLRSNQEILIEAVALEKLKENAEQAEKTAEAEFIDQIITLVTRM 220
Query: 120 HDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCP 179
H+RLV+IKQSQ SPVPIP+DFCCPLSLELMTDPVIVASGQTYERAFIK WI+LGL VCP
Sbjct: 221 HERLVLIKQSQTYSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIELGLTVCP 280
Query: 180 KTRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSH 239
KT+QTLAHT LI NYTVKALIANWCE NNVKLPDP K+ S NQPSPL
Sbjct: 281 KTQQTLAHTNLITNYTVKALIANWCESNNVKLPDPIKSMSFNQPSPLL------------ 328
Query: 240 IFPHTRGNQQIMPESTRSTNSPAKNLVSLNNT-REGSSPLHPHSTSETSYSGIAGNGPGL 298
I ES ++T SP +N++S + REGSSPLH HSTSE+S S I GNG GL
Sbjct: 329 ---------PISSESNQATGSPGQNMISSSGIQREGSSPLHSHSTSESSLSVIVGNGQGL 379
Query: 299 DIARIS-LTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASS 357
DIARIS LTSSE+R SNSEER+++ V S S S KE + S HNR+ASASS
Sbjct: 380 DIARISSLTSSEERSSNSEERNLDSVHHCSASPSRKEVSTAVRADGLLSQNHNRSASASS 439
Query: 358 VLSNLNLSQG---DANETSELSNH-----SDASGEGKLESQPATTMR---REPEFPSRVM 406
L + QG DANE+SE SNH SD SGE K E Q ++ + REPEFPSR++
Sbjct: 440 ALGHAAFPQGASGDANESSEFSNHLTSYSSDISGEVKPEPQASSALHTPHREPEFPSRLV 499
Query: 407 ETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATA 466
+TRSRSQ IWRRPS+R VPRIVS+S ETRADL+GIET+VR LVEDLKST +DTQR+ATA
Sbjct: 500 DTRSRSQTIWRRPSDRLVPRIVSSSAIETRADLAGIETEVRNLVEDLKSTLVDTQRDATA 559
Query: 467 ELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 526
+LRLLAKHNMDNR+VIAN GAI++LV++L S++ KIQENAVTALLNLSINDNNK+AI NA
Sbjct: 560 KLRLLAKHNMDNRIVIANFGAISLLVNLLRSTDIKIQENAVTALLNLSINDNNKTAIGNA 619
Query: 527 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKK 586
+AIEPLIHVL+TGSPEA+EN+AATLFSLSVIEDNK++IGRSGAI PLVDLLGNGTPRGKK
Sbjct: 620 DAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGAIVPLVDLLGNGTPRGKK 679
Query: 587 DAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIG 646
DAATALFNLSI+HENK RIVQAGAVKHLV+LMDPAAGMVDKAVAVLANLATIP+GR AIG
Sbjct: 680 DAATALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIG 739
Query: 647 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR 706
QE GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC MVLQEGAVPPLVALSQSGTPR
Sbjct: 740 QEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCHMVLQEGAVPPLVALSQSGTPR 799
Query: 707 AKEKAQALLSYFRNQRHGNAGRG 729
AKEKAQALLS+FRNQRHGNAGR
Sbjct: 800 AKEKAQALLSFFRNQRHGNAGRA 822
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565898|ref|XP_003551173.1| PREDICTED: U-box domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 976 bits (2522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/743 (69%), Positives = 596/743 (80%), Gaps = 18/743 (2%)
Query: 1 MSKIRTSGLDIMLQLKSSLQYFPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDG 60
+S+IRTSGL+I QLK S P ELSS L+LCSQK+K + +E+ S +IKEAI + ++
Sbjct: 103 ISRIRTSGLNIFQQLKDSQHCLPDELSSEYLQLCSQKLKLLGHEEISPVIKEAITEHLEN 162
Query: 61 VAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMH 120
V PSSE+L K+A+SL LRSNQE+LIEAVALE+LKENAEQ EK EAEF+DQMI++VTRMH
Sbjct: 163 VGPSSELLTKIADSLGLRSNQEVLIEAVALERLKENAEQTEKTAEAEFIDQMIAVVTRMH 222
Query: 121 DRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPK 180
+RLVM+KQ+Q SPV IP+DFCCPLSLELMTDPVIVASGQTYERAFIK WIDLGL VCPK
Sbjct: 223 ERLVMLKQAQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPK 282
Query: 181 TRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHI 240
TRQTL HT LIPNYTVKALIANWCE NNV+L DPTK+ +LNQ S L + +S R+S +
Sbjct: 283 TRQTLVHTHLIPNYTVKALIANWCESNNVQLVDPTKSTNLNQASVLHGYMESGTTRESPV 342
Query: 241 FPHTRGNQQIMPESTRSTN--SPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGL 298
F H+R NQ PES RS + SPA NL S REG+SPLHP STSE S+ G+ NG +
Sbjct: 343 FAHSRSNQPSSPESARSCSFSSPANNLTSGGTQREGTSPLHPRSTSEGSFRGMV-NGQYM 401
Query: 299 DIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSV 358
D+ARIS +DR ++S+E S++ PSMS S +E + + + +HI R S SS
Sbjct: 402 DLARISPEGLDDRSASSDESSVDSASHPSMSPSRRESSSAFSSEQSQTHI--RAVSDSSA 459
Query: 359 LSNLNL---SQGDANETSELSNHSDASGEGKLESQPAT---------TMRREPEFPSRVM 406
LSN N +Q D N +LS + S E E P T ++ REPEFP R +
Sbjct: 460 LSNANFPQETQDDDNNAPQLSTSAGHSREASGELNPGTETGGTTAVPSVHREPEFPLR-L 518
Query: 407 ETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATA 466
ETRSRSQ IWRRPSER VPRIVS+ ETRADLS IETQVR LVE L+S+ +DTQREATA
Sbjct: 519 ETRSRSQAIWRRPSERHVPRIVSSPVVETRADLSAIETQVRNLVEGLRSSDVDTQREATA 578
Query: 467 ELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 526
ELRLLAKHNMDNR+ IANCGAIN+LVD+L S++T IQENAVTALLNLSINDNNK+AIANA
Sbjct: 579 ELRLLAKHNMDNRIAIANCGAINLLVDLLQSTDTTIQENAVTALLNLSINDNNKTAIANA 638
Query: 527 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKK 586
AIEPLIHVL+TGSPEA+EN+AATLFSLSVIE+NKI IGRSGAIGPLV+LLG+GTPRGK+
Sbjct: 639 GAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIGPLVELLGSGTPRGKR 698
Query: 587 DAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIG 646
DAATALFNLSI+HENK RIVQAGAV+HLVDLMDPAAGMVDKAVAVLANLATIP+GR AIG
Sbjct: 699 DAATALFNLSIFHENKNRIVQAGAVRHLVDLMDPAAGMVDKAVAVLANLATIPEGRNAIG 758
Query: 647 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR 706
E GIPVLVEVVELGSARGKENAAAALL LC +S +F S VLQ+GAVPPLVALSQSGTPR
Sbjct: 759 DEGGIPVLVEVVELGSARGKENAAAALLHLCLHSPKFSSKVLQQGAVPPLVALSQSGTPR 818
Query: 707 AKEKAQALLSYFRNQRHGNAGRG 729
AKEKAQALL+ F++QRHG++GRG
Sbjct: 819 AKEKAQALLNQFKSQRHGSSGRG 841
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539692|ref|XP_003538329.1| PREDICTED: U-box domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/743 (69%), Positives = 595/743 (80%), Gaps = 18/743 (2%)
Query: 1 MSKIRTSGLDIMLQLKSSLQYFPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDG 60
+S+IRTSGL+I LQLK S P ELSS L+ CSQK+K + +E+TS +I+EAI + ++
Sbjct: 100 ISRIRTSGLNIFLQLKDSQHCLPDELSSEHLQHCSQKLKLLGHEETSPVIQEAITEHLEN 159
Query: 61 VAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMH 120
V PSSE+L K+A+SL LRSNQE+LIEAVALE+LKENAEQ EK EAE +DQMI++VT MH
Sbjct: 160 VGPSSELLSKIADSLGLRSNQEVLIEAVALERLKENAEQTEKTAEAELIDQMIAVVTHMH 219
Query: 121 DRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPK 180
+RLVM+KQ+Q SPVPIP+DFCCPLSLELMTDPVIVASGQTYERAFIK WIDLGL VC K
Sbjct: 220 ERLVMLKQAQSISPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCAK 279
Query: 181 TRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHI 240
TRQTL HT LIPNYTVKALIANWCE NNV+L DPTK+ +LNQ L + +S R+S +
Sbjct: 280 TRQTLVHTNLIPNYTVKALIANWCESNNVQLVDPTKSTNLNQACVLHGYMESGTTRESPV 339
Query: 241 FPHTRGNQQIMPES--TRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGL 298
F H+R NQ PES +RS +SPA NL S REG+SPLHP STSE S SG+ NG +
Sbjct: 340 FVHSRSNQPSSPESAGSRSFSSPANNLTSGGTQREGTSPLHPRSTSEGSLSGMV-NGQYM 398
Query: 299 DIARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSV 358
D+ARIS +DR ++S+E S++ PSMS S +E + + + +HI R S SS
Sbjct: 399 DLARISPEGLDDRSASSDESSVDSASHPSMSPSRRESSSAFSSEQSQTHI--RAVSDSSA 456
Query: 359 LSNLNLSQ---GDANETSELSNHSDASGE--GKLESQPAT-------TMRREPEFPSRVM 406
LSN N Q D N +LS + S E G+L P T ++ REPEFP R +
Sbjct: 457 LSNANFPQETEDDNNNAPQLSTSAGHSREASGELNPGPETAGTTSVASVHREPEFPLR-L 515
Query: 407 ETRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATA 466
ETRSRSQ IWRRPSER VPRIVS+ ETRADLS IETQVR LVE LKS+ +DTQREATA
Sbjct: 516 ETRSRSQAIWRRPSERHVPRIVSSPVVETRADLSAIETQVRNLVEGLKSSDVDTQREATA 575
Query: 467 ELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 526
ELRLLAKHNMDNR+ IANCGAIN+LVD+L S++T IQENAVTALLNLSINDNNK+AIANA
Sbjct: 576 ELRLLAKHNMDNRIAIANCGAINVLVDLLQSTDTTIQENAVTALLNLSINDNNKTAIANA 635
Query: 527 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKK 586
AIEPLIHVL+TGSPEA+EN+AATLFSLSVIE+NKI IGRSGAIGPLV+LLG+GTPRGKK
Sbjct: 636 GAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKIFIGRSGAIGPLVELLGSGTPRGKK 695
Query: 587 DAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIG 646
DAATALFNLSI+HENK IVQAGAV+HLVDLMDPAAGMVDKAVAVLANLATIP+GR AIG
Sbjct: 696 DAATALFNLSIFHENKNWIVQAGAVRHLVDLMDPAAGMVDKAVAVLANLATIPEGRNAIG 755
Query: 647 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR 706
E GIPVLVEVVELGSARGKENAAAALL LC +S+++ VLQ+GAVPPLVALSQSGTPR
Sbjct: 756 DEGGIPVLVEVVELGSARGKENAAAALLHLCLHSTKYLGKVLQQGAVPPLVALSQSGTPR 815
Query: 707 AKEKAQALLSYFRNQRHGNAGRG 729
AKEKAQALL+ FR+QRHG+AGRG
Sbjct: 816 AKEKAQALLNQFRSQRHGSAGRG 838
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567955|ref|XP_002524955.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223535790|gb|EEF37452.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/742 (68%), Positives = 569/742 (76%), Gaps = 79/742 (10%)
Query: 1 MSKIRTSGLDIMLQLKSSLQYFPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDG 60
+SKIRT GLDI LKSS ++ P ELS TSSL
Sbjct: 124 ISKIRTLGLDIFQLLKSSHEHLPDELS------------------TSSL----------- 154
Query: 61 VAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMH 120
+EILIEAVALEKLKENAEQAEK EAE DQMISL
Sbjct: 155 --------------------EEILIEAVALEKLKENAEQAEKPREAELFDQMISL----- 189
Query: 121 DRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPK 180
SQ CS VPIP+DFCCPLSLELMTDPVIV SGQTYERAFIK WI+LGL VCPK
Sbjct: 190 --------SQTCSHVPIPADFCCPLSLELMTDPVIVGSGQTYERAFIKNWIELGLTVCPK 241
Query: 181 TRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHI 240
TRQTLAHT LIPNYTVKALIANWCE NNVKLPDP K+ S NQPS L +HA+S PR SH
Sbjct: 242 TRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPVKSVSFNQPSALLIHAESGTPRGSHG 301
Query: 241 FPHTRGNQQIMPESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDI 300
F ++RGNQ + PESTRST+SP +N +S + RE +SP HP STS++S SGI GN GLD+
Sbjct: 302 F-YSRGNQPMSPESTRSTDSPDRNWISSSVHRESTSPCHPRSTSDSSLSGIVGNEQGLDM 360
Query: 301 ARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLS 360
ARISL SSE+R N E R+ + + S+S S E + E + H+R ASASS+
Sbjct: 361 ARISLASSEERSVNLEGRNRDSGVRHSVSPSRNEVSNAVRVGEPIAQSHSRNASASSI-- 418
Query: 361 NLNLSQG---DANETSELSNH-----SDASGEGKLESQPATTM-----RREPEFPSRVME 407
N + SQG D N++SE+ NH SD SGE K E+Q +T + REPEF R +E
Sbjct: 419 NASFSQGAQVDTNDSSEVLNHLTSYSSDNSGEVKAETQASTALNSPRPHREPEFAPRFIE 478
Query: 408 TRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAE 467
TRSRSQ IWRRPS+R +PRIVS+ ETRADLSG+ETQVR LVEDLKS S+D QR ATAE
Sbjct: 479 TRSRSQTIWRRPSDRLIPRIVSSPAIETRADLSGVETQVRNLVEDLKSDSIDVQRAATAE 538
Query: 468 LRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN 527
LRLLAKHNMDNR+VIANCGAINILV++L S++ KIQENAVTALLNLSINDNNK+AIANA+
Sbjct: 539 LRLLAKHNMDNRIVIANCGAINILVNLLRSADAKIQENAVTALLNLSINDNNKTAIANAD 598
Query: 528 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKD 587
AI PLIHVL+TGSPEA+EN+AATLFSLSVIEDNK++IGRSGA+GPLVDLLGNGTPRGKKD
Sbjct: 599 AIGPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGAVGPLVDLLGNGTPRGKKD 658
Query: 588 AATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQ 647
AATALFNLSI+HENKARIVQAGAVKHLV+LMDPAAGMVDKAVAVLANLATIP+GR AIGQ
Sbjct: 659 AATALFNLSIFHENKARIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQ 718
Query: 648 ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRA 707
E GIPVLVEVVELGSARGKENAAAALLQLCTNS+RFC+ VLQEGAVPPLVALSQSGTPRA
Sbjct: 719 EGGIPVLVEVVELGSARGKENAAAALLQLCTNSNRFCNTVLQEGAVPPLVALSQSGTPRA 778
Query: 708 KEKAQALLSYFRNQRHGNAGRG 729
KEKAQALLS+FRNQRHGNA RG
Sbjct: 779 KEKAQALLSFFRNQRHGNA-RG 799
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463969|ref|XP_004149702.1| PREDICTED: U-box domain-containing protein 4-like [Cucumis sativus] gi|449524872|ref|XP_004169445.1| PREDICTED: U-box domain-containing protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/744 (68%), Positives = 590/744 (79%), Gaps = 17/744 (2%)
Query: 1 MSKIRTSGLDIMLQLKSSLQYFPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDG 60
+SKI LDI L+SS + P ELSS SLE C QKIK++ E+ SS+IK+AIR+QVDG
Sbjct: 100 ISKIGKFSLDIFQLLQSSNENLPEELSSKSLEHCVQKIKNIGKEEISSVIKDAIRNQVDG 159
Query: 61 VAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMH 120
+APSS++LVK+A+SLSLRSNQ ILIEAVALEKLKE+AEQAE GEAE +DQMI LVTRMH
Sbjct: 160 IAPSSDVLVKLADSLSLRSNQAILIEAVALEKLKESAEQAENTGEAEDIDQMIGLVTRMH 219
Query: 121 DRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPK 180
+RL+MIKQSQ SPV IP DFCCPLSLELMTDPVIVASGQTYER FIK WID GL VCPK
Sbjct: 220 ERLIMIKQSQSSSPVSIPPDFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPK 279
Query: 181 TRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHI 240
TRQTL HT LIPNYTVKALIANWC+ NNVKL DP+K+ +LNQ SPL V + +
Sbjct: 280 TRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQISPLLVGSFEPDTHREPL 339
Query: 241 FPHTRGNQQIMPESTRSTNSPAKNLVSLNNT-REGSSPLHPHSTSETSYSGIAGNGPGLD 299
FPH+ G Q + P+STRS S KN SL T R+GSS L PHS SE S S AG+ ++
Sbjct: 340 FPHSPGYQPMSPQSTRSAGS-GKNSNSLGGTHRDGSSSLLPHSLSEDSLSNDAGDEGAIE 398
Query: 300 IARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVL 359
+ R+ L+SSED+ + EE + V +PSMS S + E S + ++++S V
Sbjct: 399 VDRLLLSSSEDQMAKLEENGCDPVAKPSMSPSRTNVLNSCGEDEPSHSHNRSSSTSSGV- 457
Query: 360 SNLNLSQG---DANETSELSNH-----SDASGEGKLESQPA---TTMRREPE--FPSRVM 406
SN N S+G +ANE + LS + SDA+GE K E A TT REPE P R+
Sbjct: 458 SNANHSRGTSGEANEATHLSTNLTGYGSDAAGESKSEPLAAATPTTNHREPEREHPPRLA 517
Query: 407 E-TRSRSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREAT 465
+ R R +W RPSERF RI+++S ETR DLS IE QV+K+VE+LKS+SLDT R AT
Sbjct: 518 DHPRPRGNTMWLRPSERFASRIITSSANETRPDLSAIEAQVQKVVEELKSSSLDTLRGAT 577
Query: 466 AELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN 525
AELRLLAKHNMDNR+VIA CGAI+ LV +L S ++KIQENAVTALLNLSINDNNKSAIA
Sbjct: 578 AELRLLAKHNMDNRIVIAQCGAIDYLVGLLLSEDSKIQENAVTALLNLSINDNNKSAIAQ 637
Query: 526 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGK 585
ANAIEPLIHVL+TGSPEA+EN+AATLFSLSVIE+NK+KIGRSGAIGPLV+LLGNGTPRGK
Sbjct: 638 ANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGK 697
Query: 586 KDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAI 645
KDAATALFNLSI+HENKARIVQAGAV+HLV+LMDPAAGMVDKAVAVLANLATIP+GR AI
Sbjct: 698 KDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAI 757
Query: 646 GQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTP 705
GQE GIPVLVEVVELGSARGKENAAAALLQLCT S+R CSMVLQEGAVPPLVALSQSGT
Sbjct: 758 GQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTA 817
Query: 706 RAKEKAQALLSYFRNQRHGNAGRG 729
RAKEKAQALLS+FR+QRHGN+GRG
Sbjct: 818 RAKEKAQALLSHFRSQRHGNSGRG 841
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297825203|ref|XP_002880484.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297326323|gb|EFH56743.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/737 (64%), Positives = 567/737 (76%), Gaps = 17/737 (2%)
Query: 3 KIRTSGLDIMLQLKSSLQYFPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVA 62
K+R + +D L SS + P ELS SLE C +KIKH+ YE+ SS+I A+RDQ DGV
Sbjct: 100 KMRDTIVDTFKFLMSSKNHLPDELSPASLEQCLEKIKHLSYEEISSVIDGALRDQRDGVG 159
Query: 63 PSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDR 122
PS EILVK+ E+ LRSNQEILIEAVALE+ KE AEQ+E E EF+DQ+I +V RMH+R
Sbjct: 160 PSPEILVKIGENTGLRSNQEILIEAVALERQKEMAEQSENNAEVEFLDQLIVIVNRMHER 219
Query: 123 LVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTR 182
L++IKQ+Q S V I +DF CPLSLE+MTDPVIV+SGQTYE+AFIK+WIDLGL VCPKTR
Sbjct: 220 LLLIKQTQTSS-VAILADFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTR 278
Query: 183 QTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHIFP 242
QTL HTTLIPNYTVKALIANWCE N+VKLPDP K+ SLN+ SPL DS + +
Sbjct: 279 QTLTHTTLIPNYTVKALIANWCETNDVKLPDPNKSTSLNELSPLLSCTDSIPSTGADVSA 338
Query: 243 HTRGNQ-QIMPESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIA 301
H N+ S+ T P+ S REG+SP P S S G++GNG GLD
Sbjct: 339 HKVSNKSHDWDASSSETGKPS--FSSRATGREGASPSRPASALGASSPGVSGNGYGLDAR 396
Query: 302 RISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVLSN 361
R SL EDR ++S E + G+ S+S + + +++ + S + H+R+ SA+S +SN
Sbjct: 397 RGSLNDFEDRSNDSREMKTDAPGRSSVSSTTR---GSVENGQTSENHHHRSPSATSTVSN 453
Query: 362 LNLSQGDANETSELSNH-----SDASGE---GKLESQPATTMRRE-PEFPSRVMETRSRS 412
+ DANE SE S H SDASGE G L + + RR+ +F + M+ RSR
Sbjct: 454 EEFPRADANENSEESAHATPYSSDASGEIRSGPLAATTSAATRRDLSDFSPKFMDRRSRG 513
Query: 413 QVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLA 472
Q WRRPSER RIVS ETR DLS +ETQV+KLVE+LKS+SLDTQR+ATAELRLLA
Sbjct: 514 Q-FWRRPSERLGSRIVSAPSNETRRDLSEVETQVKKLVEELKSSSLDTQRQATAELRLLA 572
Query: 473 KHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPL 532
KHNMDNR+VI N GAI +LV++L+SS++ QENAVTALLNLSINDNNK+AIA+A AIEPL
Sbjct: 573 KHNMDNRIVIGNSGAIVLLVELLYSSDSATQENAVTALLNLSINDNNKTAIADAGAIEPL 632
Query: 533 IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 592
I+VL+ GS EA+EN+AATLFSLSVIE+NKIKIG+SGAIGPLVDLLGNGTPRGKKDAATAL
Sbjct: 633 IYVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATAL 692
Query: 593 FNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIP 652
FNLSI+ ENKA IVQ+GAV++L+DLMDPAAGMVDKAVAVLANLATIP+GR AIGQE GIP
Sbjct: 693 FNLSIHQENKATIVQSGAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIP 752
Query: 653 VLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQ 712
+LVEVVELGSARGKENAAAALLQL TNS RFC+MVLQEGAVPPLVALSQSGTPRA+EKAQ
Sbjct: 753 LLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQ 812
Query: 713 ALLSYFRNQRHGNAGRG 729
ALLSYFRNQRHGNAGRG
Sbjct: 813 ALLSYFRNQRHGNAGRG 829
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28974687|gb|AAO61490.1| arm repeat-containing protein [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/734 (66%), Positives = 571/734 (77%), Gaps = 48/734 (6%)
Query: 1 MSKIRTSGLDIMLQLKSSLQYFPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDG 60
+ KIR+ L+I+ LKSS + P +++ T+LEL KIK+++YE S I + I+ QV+G
Sbjct: 100 IGKIRSCSLEILELLKSSHKSLPADVTLTTLELYILKIKYVDYEMISVTITKVIKAQVEG 159
Query: 61 VAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMH 120
+ SS+ K+A+ LSL SNQE+LIE VALEKLKENAEQAEK+ E+++QMI+LV+ MH
Sbjct: 160 LGTSSDSFAKIADCLSLNSNQELLIELVALEKLKENAEQAEKSEVVEYIEQMITLVSHMH 219
Query: 121 DRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPK 180
D V KQSQ C+ VPIP DFCCPLSLELMTDPVIVASGQTYERAFI++WIDLGL VCPK
Sbjct: 220 DCFVTTKQSQSCTAVPIPPDFCCPLSLELMTDPVIVASGQTYERAFIRRWIDLGLTVCPK 279
Query: 181 TRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHI 240
TRQTL HT LIPNYTVKALIANWCE+NNVKLPDP K+ SLNQPS
Sbjct: 280 TRQTLGHTNLIPNYTVKALIANWCEINNVKLPDPMKSLSLNQPS---------------- 323
Query: 241 FPHTRGNQQIMPESTRSTNSPAKNLVSLN-NTREGSSPLHPHSTSETSYSGIAGNGPGLD 299
+ P+ST+S+ SP K+L+S + RE SSP HP S+SE S G+ GN D
Sbjct: 324 ---------LSPDSTQSSGSPRKSLISSTVSQREESSPSHPRSSSEESLPGVGGNILAFD 374
Query: 300 IARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVL 359
+ R+ + SEDR ++S E S G ++ +FP HNRT SA S L
Sbjct: 375 VERMRI-KSEDRMAHSGEISSH--GHSTLVAD-DQFPLG----------HNRTTSAPSTL 420
Query: 360 SNLNLSQ---GDANETSELSNHSDASGEGKLESQPA-TTMRREPEFPSRVMETRSRSQVI 415
SN N S GD N+ SE + S ASG+ L+S+PA + + +EPEFP E R R+Q+I
Sbjct: 421 SNSNFSPVIPGDGNKLSE--DSSVASGDVGLDSKPAASVLPKEPEFP-YTPEMRPRNQLI 477
Query: 416 WRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHN 475
WRRP+ERF PRIVS++ E RADLS +E QV+KL+E+LKSTSLD QR ATAELRLLAKHN
Sbjct: 478 WRRPTERF-PRIVSSATVERRADLSEVEEQVKKLIEELKSTSLDMQRNATAELRLLAKHN 536
Query: 476 MDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHV 535
MDNRMVIANCGAI+ LV++LHS + K+QE+AVTALLNLSINDNNK AIANA+AIEPLIHV
Sbjct: 537 MDNRMVIANCGAISSLVNLLHSKDMKVQEDAVTALLNLSINDNNKCAIANADAIEPLIHV 596
Query: 536 LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595
LQTGS EA+EN+AATLFSLSV+E+NK+KIGRSGAI PLVDLLGNGTPRGKKDAATALFNL
Sbjct: 597 LQTGSAEAKENSAATLFSLSVMEENKMKIGRSGAIKPLVDLLGNGTPRGKKDAATALFNL 656
Query: 596 SIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLV 655
SI HENK+RI+QAGAVK+LV+LMDPA GMVDKAVAVL+NLATIP+GR IGQE GIP+LV
Sbjct: 657 SILHENKSRIIQAGAVKYLVELMDPATGMVDKAVAVLSNLATIPEGRAEIGQEGGIPLLV 716
Query: 656 EVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715
EVVELGSARGKENAAAALLQLCTNSSRFC+MVLQEGAVPPLVALSQSGTPRA+EKAQ LL
Sbjct: 717 EVVELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAREKAQQLL 776
Query: 716 SYFRNQRHGNAGRG 729
SYFRNQRHGNAGRG
Sbjct: 777 SYFRNQRHGNAGRG 790
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254516|ref|NP_179895.6| RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana] gi|330252323|gb|AEC07417.1| RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/739 (64%), Positives = 566/739 (76%), Gaps = 17/739 (2%)
Query: 1 MSKIRTSGLDIMLQLKSSLQYFPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDG 60
+ K+R + +D L SS + P ELS SLE C +KIKH+ YE+ SS+I A+RDQ DG
Sbjct: 98 LPKMRDTIVDTFQFLMSSKNHLPDELSPASLEQCLEKIKHLSYEEISSVIDGALRDQRDG 157
Query: 61 VAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMH 120
V PS EILVK+ E+ LRSNQEILIEAVALE+ KE AEQ+E E EF+DQ+I +V RMH
Sbjct: 158 VGPSPEILVKIGENTGLRSNQEILIEAVALERQKEMAEQSENNAEVEFLDQLIVIVNRMH 217
Query: 121 DRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPK 180
+RL++IKQ+Q S V I +DF CPLSLE+MTDPVIV+SGQTYE+AFIK+WIDLGL VCPK
Sbjct: 218 ERLLLIKQTQTSS-VAILADFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPK 276
Query: 181 TRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHI 240
TRQTL HTTLIPNYTVKALIANWCE N+VKLPDP K+ SLN+ SPL DS + +
Sbjct: 277 TRQTLTHTTLIPNYTVKALIANWCETNDVKLPDPNKSTSLNELSPLLSCTDSIPSTGADV 336
Query: 241 FPHTRGNQ-QIMPESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLD 299
N+ S+ T P+ S REG+SP P S S GI+GNG GLD
Sbjct: 337 SARKVSNKSHDWDASSSETGKPS--FSSRATEREGASPSRPASALGASSPGISGNGYGLD 394
Query: 300 IARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVL 359
R SL EDR ++S E + G+ S+S + + +++ + S + H+R+ SA+S +
Sbjct: 395 ARRGSLNDFEDRSNDSRELRTDAPGRSSVSSTTR---GSVENGQTSENHHHRSPSATSTV 451
Query: 360 SNLNLSQGDANETSELSNH-----SDASGE---GKLESQPATTMRRE-PEFPSRVMETRS 410
SN + DANE SE S H SDASGE G L + + RR+ +F + M+ R+
Sbjct: 452 SNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATTSAATRRDLSDFSPKFMDRRT 511
Query: 411 RSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRL 470
R Q WRRPSER RIVS ETR DLS +ETQV+KLVE+LKS+SLDTQR+ATAELRL
Sbjct: 512 RGQ-FWRRPSERLGSRIVSAPSNETRRDLSEVETQVKKLVEELKSSSLDTQRQATAELRL 570
Query: 471 LAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIE 530
LAKHNMDNR+VI N GAI +LV++L+S+++ QENAVTALLNLSINDNNK AIA+A AIE
Sbjct: 571 LAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIE 630
Query: 531 PLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT 590
PLIHVL+ GS EA+EN+AATLFSLSVIE+NKIKIG+SGAIGPLVDLLGNGTPRGKKDAAT
Sbjct: 631 PLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAAT 690
Query: 591 ALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENG 650
ALFNLSI+ ENKA IVQ+GAV++L+DLMDPAAGMVDKAVAVLANLATIP+GR AIGQE G
Sbjct: 691 ALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGG 750
Query: 651 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 710
IP+LVEVVELGSARGKENAAAALLQL TNS RFC+MVLQEGAVPPLVALSQSGTPRA+EK
Sbjct: 751 IPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREK 810
Query: 711 AQALLSYFRNQRHGNAGRG 729
AQALLSYFRNQRHGNAGRG
Sbjct: 811 AQALLSYFRNQRHGNAGRG 829
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334184386|ref|NP_001189583.1| RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana] gi|357529165|sp|O22193.3|PUB4_ARATH RecName: Full=U-box domain-containing protein 4; AltName: Full=Plant U-box protein 4 gi|330252324|gb|AEC07418.1| RING/U-box domain and ARM repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/739 (64%), Positives = 566/739 (76%), Gaps = 17/739 (2%)
Query: 1 MSKIRTSGLDIMLQLKSSLQYFPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDG 60
+ K+R + +D L SS + P ELS SLE C +KIKH+ YE+ SS+I A+RDQ DG
Sbjct: 95 LPKMRDTIVDTFQFLMSSKNHLPDELSPASLEQCLEKIKHLSYEEISSVIDGALRDQRDG 154
Query: 61 VAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMH 120
V PS EILVK+ E+ LRSNQEILIEAVALE+ KE AEQ+E E EF+DQ+I +V RMH
Sbjct: 155 VGPSPEILVKIGENTGLRSNQEILIEAVALERQKEMAEQSENNAEVEFLDQLIVIVNRMH 214
Query: 121 DRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPK 180
+RL++IKQ+Q S V I +DF CPLSLE+MTDPVIV+SGQTYE+AFIK+WIDLGL VCPK
Sbjct: 215 ERLLLIKQTQTSS-VAILADFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPK 273
Query: 181 TRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHI 240
TRQTL HTTLIPNYTVKALIANWCE N+VKLPDP K+ SLN+ SPL DS + +
Sbjct: 274 TRQTLTHTTLIPNYTVKALIANWCETNDVKLPDPNKSTSLNELSPLLSCTDSIPSTGADV 333
Query: 241 FPHTRGNQ-QIMPESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLD 299
N+ S+ T P+ S REG+SP P S S GI+GNG GLD
Sbjct: 334 SARKVSNKSHDWDASSSETGKPS--FSSRATEREGASPSRPASALGASSPGISGNGYGLD 391
Query: 300 IARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTASASSVL 359
R SL EDR ++S E + G+ S+S + + +++ + S + H+R+ SA+S +
Sbjct: 392 ARRGSLNDFEDRSNDSRELRTDAPGRSSVSSTTR---GSVENGQTSENHHHRSPSATSTV 448
Query: 360 SNLNLSQGDANETSELSNH-----SDASGE---GKLESQPATTMRRE-PEFPSRVMETRS 410
SN + DANE SE S H SDASGE G L + + RR+ +F + M+ R+
Sbjct: 449 SNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATTSAATRRDLSDFSPKFMDRRT 508
Query: 411 RSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRL 470
R Q WRRPSER RIVS ETR DLS +ETQV+KLVE+LKS+SLDTQR+ATAELRL
Sbjct: 509 RGQ-FWRRPSERLGSRIVSAPSNETRRDLSEVETQVKKLVEELKSSSLDTQRQATAELRL 567
Query: 471 LAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIE 530
LAKHNMDNR+VI N GAI +LV++L+S+++ QENAVTALLNLSINDNNK AIA+A AIE
Sbjct: 568 LAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIE 627
Query: 531 PLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT 590
PLIHVL+ GS EA+EN+AATLFSLSVIE+NKIKIG+SGAIGPLVDLLGNGTPRGKKDAAT
Sbjct: 628 PLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAAT 687
Query: 591 ALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENG 650
ALFNLSI+ ENKA IVQ+GAV++L+DLMDPAAGMVDKAVAVLANLATIP+GR AIGQE G
Sbjct: 688 ALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGG 747
Query: 651 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 710
IP+LVEVVELGSARGKENAAAALLQL TNS RFC+MVLQEGAVPPLVALSQSGTPRA+EK
Sbjct: 748 IPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREK 807
Query: 711 AQALLSYFRNQRHGNAGRG 729
AQALLSYFRNQRHGNAGRG
Sbjct: 808 AQALLSYFRNQRHGNAGRG 826
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| TAIR|locus:2045334 | 829 | PUB4 "plant U-box 4" [Arabidop | 0.990 | 0.870 | 0.623 | 2.8e-224 | |
| TAIR|locus:2158252 | 707 | AT5G67340 [Arabidopsis thalian | 0.489 | 0.504 | 0.567 | 8.3e-164 | |
| TAIR|locus:2102455 | 760 | AT3G54790 [Arabidopsis thalian | 0.386 | 0.371 | 0.614 | 1.7e-125 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.366 | 0.436 | 0.5 | 3.8e-91 | |
| TAIR|locus:2082682 | 632 | PUB14 "plant U-box 14" [Arabid | 0.400 | 0.462 | 0.476 | 2.4e-87 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.389 | 0.464 | 0.472 | 7.2e-86 | |
| UNIPROTKB|Q0IMG9 | 694 | SPL11 "E3 ubiquitin-protein li | 0.399 | 0.419 | 0.459 | 4.5e-84 | |
| TAIR|locus:2162276 | 660 | PUB15 "Plant U-Box 15" [Arabid | 0.371 | 0.410 | 0.477 | 9.3e-84 | |
| TAIR|locus:2013990 | 628 | AT1G71020 [Arabidopsis thalian | 0.386 | 0.449 | 0.477 | 7.4e-82 | |
| TAIR|locus:2075140 | 660 | PUB13 "plant U-box 13" [Arabid | 0.400 | 0.442 | 0.454 | 2.3e-62 |
| TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2165 (767.2 bits), Expect = 2.8e-224, P = 2.8e-224
Identities = 461/739 (62%), Positives = 547/739 (74%)
Query: 1 MSKIRTSGLDIMLQLKSSLQYFPGELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDG 60
+ K+R + +D L SS + P ELS SLE C +KIKH+ YE+ SS+I A+RDQ DG
Sbjct: 98 LPKMRDTIVDTFQFLMSSKNHLPDELSPASLEQCLEKIKHLSYEEISSVIDGALRDQRDG 157
Query: 61 VAPSSEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMH 120
V PS EILVK+ E+ LRSNQEILIEAVALE+ KE AEQ+E E EF+DQ+I +V RMH
Sbjct: 158 VGPSPEILVKIGENTGLRSNQEILIEAVALERQKEMAEQSENNAEVEFLDQLIVIVNRMH 217
Query: 121 DRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPK 180
+RL++IKQ+Q S V I +DF CPLSLE+MTDPVIV+SGQTYE+AFIK+WIDLGL VCPK
Sbjct: 218 ERLLLIKQTQTSS-VAILADFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPK 276
Query: 181 TRQTLAHTTLIPNYTVKALIANWCELNNVKLPDPTKTASLNQPSPLFVHADSNAPRDSHI 240
TRQTL HTTLIPNYTVKALIANWCE N+VKLPDP K+ SLN+ SPL DS + +
Sbjct: 277 TRQTLTHTTLIPNYTVKALIANWCETNDVKLPDPNKSTSLNELSPLLSCTDSIPSTGADV 336
Query: 241 FPHTRGNQQI-MPESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLD 299
N+ S+ T P+ + S REG+SP P S S GI+GNG GLD
Sbjct: 337 SARKVSNKSHDWDASSSETGKPSFS--SRATEREGASPSRPASALGASSPGISGNGYGLD 394
Query: 300 IARISLTSSEDRFSNSEERSMELVGQPSMSKSIKEFPATIDTSEQSSHIHNRTXXXXXXX 359
R SL EDR ++S E + G+ S+S + + +++ + S + H+R+
Sbjct: 395 ARRGSLNDFEDRSNDSRELRTDAPGRSSVSSTTR---GSVENGQTSENHHHRSPSATSTV 451
Query: 360 XXXXXXQGDANETSELSNH-----SDASGE---GKLESQPATTMRRE-PEFPSRVMETRS 410
+ DANE SE S H SDASGE G L + + RR+ +F + M+ R+
Sbjct: 452 SNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATTSAATRRDLSDFSPKFMDRRT 511
Query: 411 RSQVIWRRPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRL 470
R Q WRRPSER RIVS ETR DLS +ETQV+KLVE+LKS+SLDTQR+ATAELRL
Sbjct: 512 RGQ-FWRRPSERLGSRIVSAPSNETRRDLSEVETQVKKLVEELKSSSLDTQRQATAELRL 570
Query: 471 LAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXE 530
LAKHNMDNR+VI N GAI +LV++L+S+++ QENAVTALLNLS E
Sbjct: 571 LAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIE 630
Query: 531 PLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT 590
PLIHVL+ GS EA+EN+AATLFSLSVIE+NKIKIG+SGAIGPLVDLLGNGTPRGKKDAAT
Sbjct: 631 PLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAAT 690
Query: 591 ALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENG 650
ALFNLSI+ ENKA IVQ+GAV++L+DLMDPAAGMVDKAVAVLANLATIP+GR AIGQE G
Sbjct: 691 ALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGG 750
Query: 651 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 710
IP+LVEVVELGSARGKENAAAALLQL TNS RFC+MVLQEGAVPPLVALSQSGTPRA+EK
Sbjct: 751 IPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREK 810
Query: 711 AQALLSYFRNQRHGNAGRG 729
AQALLSYFRNQRHGNAGRG
Sbjct: 811 AQALLSYFRNQRHGNAGRG 829
|
|
| TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 968 (345.8 bits), Expect = 8.3e-164, Sum P(2) = 8.3e-164
Identities = 207/365 (56%), Positives = 265/365 (72%)
Query: 368 DANETSELSNHSDASGEGKLESQPATTMRREPEFPSRVMETRSRSQVIWRRPSERFV--P 425
DA E ++ + S AS G + T R R + +RS W+ P ER P
Sbjct: 348 DAEELRQVFSRS-ASAPGIVSEVVCKTKRNNNAAADRSL---TRSNTPWKFPEERHWRHP 403
Query: 426 RIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC 485
I+ + ET + S IET+V+KL++DLKS+SLDTQREATA +R+LA+++ DNR+VIA C
Sbjct: 404 GIIPATVRETGSS-SSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARC 462
Query: 486 GAINILVDMLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGS-PEAR 544
AI LV +L+S++ +IQ +AVT LLNLS PLIHVL+TG EA+
Sbjct: 463 EAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAK 522
Query: 545 ENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR 604
N+AATLFSLSVIE+ K +IG +GAI PLVDLLG+G+ GKKDAATALFNLSI+HENK +
Sbjct: 523 ANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTK 582
Query: 605 IVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 664
+++AGAV++LV+LMDPA GMV+KAV VLANLAT+ +G++AIG+E GIPVLVEVVELGSAR
Sbjct: 583 VIEAGAVRYLVELMDPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSAR 642
Query: 665 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHG 724
GKENA AALLQLCT+S +FC+ V++EG +PPLVAL++SGT R KEKAQ LL YF+ R
Sbjct: 643 GKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQS 702
Query: 725 NAGRG 729
N RG
Sbjct: 703 NQRRG 707
|
|
| TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 1.7e-125, Sum P(3) = 1.7e-125
Identities = 174/283 (61%), Positives = 215/283 (75%)
Query: 448 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAV 507
KLVEDLKS S + A AE+R L ++++NR+ I CGAI L+ +L+S E QE+AV
Sbjct: 476 KLVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAV 535
Query: 508 TALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 567
TALLNLS EPL+HVL TG+ A+EN+AA+LFSLSV++ N+ +IG+S
Sbjct: 536 TALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQS 595
Query: 568 GA-IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVD 626
A I LV+LLG GT RGKKDAA+ALFNLSI H+NKARIVQA AVK+LV+L+DP MVD
Sbjct: 596 NAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEMVD 655
Query: 627 KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSM 686
KAVA+LANL+ + +GR AI +E GIP+LVE V+LGS RGKENAA+ LLQLC NS +FC++
Sbjct: 656 KAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTL 715
Query: 687 VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNAGRG 729
VLQEGA+PPLVALSQSGT RAKEKAQ LLS+FRNQR +G
Sbjct: 716 VLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDARMKKG 758
|
|
| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
Identities = 134/268 (50%), Positives = 183/268 (68%)
Query: 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 508
L+ L+S + D QR A E+RLLAK N++NR+ IA GAI +LV++L SS+ + QE+AVT
Sbjct: 328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVT 387
Query: 509 ALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG 568
ALLNLS ++ VL+TGS E RENAAATLFSLSV+++NK+ IG +G
Sbjct: 388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAG 447
Query: 569 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD-LMDPAAGMVDK 627
AI PL++LL +G+PRGKKDAATA+FNL IY NK R V+AG V HL++ L+DP GM+D+
Sbjct: 448 AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDE 507
Query: 628 AVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMV 687
A+++L+ LA P+G++ I + IP LVEV++ GS R +ENAAA L LC+ +
Sbjct: 508 ALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAA 567
Query: 688 LQEGAVPPLVALSQSGTPRAKEKAQALL 715
G L LS++GT RAK KA ++L
Sbjct: 568 KAAGVEDALKELSETGTDRAKRKASSIL 595
|
|
| TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
Identities = 141/296 (47%), Positives = 187/296 (63%)
Query: 432 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 491
G + +D T V L+E L + + + QR A ELRLLAK N+DNR+ IA GAI +L
Sbjct: 335 GGSSSSDCD--RTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLL 392
Query: 492 VDMLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATL 551
V++L S + + QE++VTALLNLS ++ VL+ GS EARENAAATL
Sbjct: 393 VELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATL 452
Query: 552 FSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 611
FSLSVI++NK+ IG +GAI L+ LL GT RGKKDAATA+FNL IY NK+R V+ G V
Sbjct: 453 FSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIV 512
Query: 612 KHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAA 670
L L+ D GMVD+A+A+LA L+T +G+ AI + IPVLVE++ GS R +ENAA
Sbjct: 513 DPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAA 572
Query: 671 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGNA 726
A L LC + ++ + GA L L+++GT RAK KA +LL + Q G A
Sbjct: 573 AILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQ-QTEGVA 627
|
|
| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 7.2e-86, Sum P(2) = 7.2e-86
Identities = 135/286 (47%), Positives = 182/286 (63%)
Query: 436 RADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML 495
R SG + +R LV+ L S S + +R A +E+R L+K + DNR++IA GAI +LV++L
Sbjct: 323 RTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLL 382
Query: 496 HSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLS 555
S + QENA+T +LNLS ++ VL+ G+ EARENAAATLFSLS
Sbjct: 383 TSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLS 442
Query: 556 VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLV 615
+ ++NKI IG SGAI LVDLL NGTPRGKKDAATALFNL IYH NK R V+AG V LV
Sbjct: 443 LADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALV 502
Query: 616 DLMDPAAG--MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 673
++ + MVD+A+ +L+ LA D + AI + N +P L+ +++ R +ENAAA L
Sbjct: 503 KMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAIL 562
Query: 674 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719
L LC + + + GAV PL+ LS++GT R K KA +LL R
Sbjct: 563 LSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608
|
|
| UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
Identities = 135/294 (45%), Positives = 182/294 (61%)
Query: 425 PRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN 484
P+ + T A S + L+ L S + QR A AELRLLAK N +NR+ IA
Sbjct: 348 PKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAE 407
Query: 485 CGAINILVDMLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEAR 544
GAI +L+ +L SS+ + QE+AVTALLNLS ++HVL+ GS EAR
Sbjct: 408 AGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEAR 467
Query: 545 ENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR 604
ENAAATLFSLSVI++ K+ IG GAI LV LLG G+ RGKKDAA ALFNL IY NK R
Sbjct: 468 ENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGR 527
Query: 605 IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSA 663
++AG V ++ L+ +P ++D+A+A+L+ L++ P+G+ AIG +PVLVE++ G+
Sbjct: 528 AIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTP 587
Query: 664 RGKENAAAALLQLCTNSSRFCSMV-LQE-GAVPPLVALSQSGTPRAKEKAQALL 715
R +ENAAA +L LC+ + QE G + PL L+ +GT R K KA LL
Sbjct: 588 RNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLL 641
|
|
| TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 9.3e-84, Sum P(2) = 9.3e-84
Identities = 130/272 (47%), Positives = 180/272 (66%)
Query: 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 504
+V LVE L S+ L+ QR + ++RLLA+ N +NR++IAN GAI +LV +L ++ IQE
Sbjct: 380 EVSLLVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQE 439
Query: 505 NAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564
NAVT LLNLS +I +L+ G+ EAREN+AA LFSLS++++NK+ I
Sbjct: 440 NAVTTLLNLSIDEVNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTI 499
Query: 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAG 623
G S I PLVDLL +GT RGKKDA TALFNLS+ NK R + AG V+ L++L+ D G
Sbjct: 500 GLSNGIPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLG 559
Query: 624 MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRF 683
M+D+A+++L LA+ P+GR AIGQ + I LVE + G+ + KE A + LL+L +N+S F
Sbjct: 560 MIDEALSILLLLASHPEGRQAIGQLSFIETLVEFIRQGTPKNKECATSVLLELGSNNSSF 619
Query: 684 CSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715
LQ G LV ++ SGT RA+ KA AL+
Sbjct: 620 ILAALQFGVYEYLVEITTSGTNRAQRKANALI 651
|
|
| TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 136/285 (47%), Positives = 182/285 (63%)
Query: 438 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 497
DLSG + +R LV L S S++ +R A +E+R L+K + DNR++IA GAI +LV +L S
Sbjct: 335 DLSGDMSAIRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTS 394
Query: 498 S-ETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQTGSPEARENAAATLFSLSV 556
+T+ QENAVT +LNLS ++ VL+ GS EARENAAATLFSLS+
Sbjct: 395 DGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSL 454
Query: 557 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 616
++NKI IG SGAI LVDLL G+ RGKKDAATALFNL IY NK R V+AG VK LV
Sbjct: 455 ADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVK 514
Query: 617 LMDPAAG--MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674
++ ++ M D+A+ +L+ LA+ + AI + N IP L++ ++ R +ENAAA LL
Sbjct: 515 MLTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILL 574
Query: 675 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719
LC + + + GAV PL+ LS+ GT RAK KA +LL R
Sbjct: 575 CLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLR 619
|
|
| TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 608 (219.1 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 136/299 (45%), Positives = 187/299 (62%)
Query: 418 RPSERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD 477
+P PR VS+ + A+ ++ L+ L + + QR A E+RLLAK N D
Sbjct: 332 KPPSSLRPRKVSSFSSPAEAN------KIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNAD 385
Query: 478 NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSXXXXXXXXXXXXXXXEPLIHVLQ 537
NR+ IA GAI +LV +L + +++IQE++VTALLNLS ++ VL+
Sbjct: 386 NRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLK 445
Query: 538 TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597
GS EARENAAATLFSLSVI++NK+ IG GAI PLV LL GT RGKKDAATALFNL I
Sbjct: 446 KGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCI 505
Query: 598 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE 656
Y NK + ++AG + L L+ +P +GMVD+A+A+LA L++ P+G+ IG + +P LVE
Sbjct: 506 YQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVE 565
Query: 657 VVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715
+ GS R +ENAAA L+ LC+ + + G + PL+ L+ +GT R K KA LL
Sbjct: 566 FIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLL 624
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O22193 | PUB4_ARATH | 6, ., 3, ., 2, ., - | 0.6468 | 0.9903 | 0.8740 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 729 | |||
| smart00504 | 63 | smart00504, Ubox, Modified RING finger domain | 2e-25 | |
| pfam04564 | 73 | pfam04564, U-box, U-box domain | 4e-22 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-18 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-17 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-14 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 4e-14 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 6e-13 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-12 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 2e-10 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 4e-09 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-08 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 2e-07 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-06 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-06 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 3e-06 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 5e-06 | |
| pfam05804 | 708 | pfam05804, KAP, Kinesin-associated protein (KAP) | 5e-06 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 7e-05 | |
| pfam13445 | 55 | pfam13445, zf-RING_LisH, RING-type zinc-finger, Li | 7e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-04 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 3e-04 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 4e-04 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 5e-04 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 0.002 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 0.002 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 0.004 |
| >gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 2e-25
Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKAL 199
+F CP+SLE+M DPVI+ SGQTYER+ I+KW+ P T Q L H LIPN +K+
Sbjct: 1 EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLSHGT-DPVTGQPLTHEDLIPNLALKSA 59
Query: 200 IANW 203
I W
Sbjct: 60 IQEW 63
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63 |
| >gnl|CDD|203049 pfam04564, U-box, U-box domain | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 4e-22
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 196
IP +F P++LELM DPVI+ SG TY+R+ I++ + P TR+ L H LIPN +
Sbjct: 1 IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60
Query: 197 KALIANWCELN 207
K I W E N
Sbjct: 61 KEKIDAWLEEN 71
|
This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-18
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
+ LV L S+ + QREA L L+ N DN + G + LV +L S + ++ +
Sbjct: 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKA 68
Query: 506 AVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 555
A+ AL NL+ ++NK + A + L+++L + + + ++NA L +L+
Sbjct: 69 ALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-17
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 481 VIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN-NKSAIANANAIEPLIHVLQTG 539
+ G + LV +L SS+ +Q A AL NLS +N N A+ A + L+ +L++
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 540 SPEARENAAATLFSLS-VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 596
E + A L +L+ EDNK+ + +G + LV+LL + +K+A AL NL+
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-14
Identities = 73/269 (27%), Positives = 129/269 (47%), Gaps = 15/269 (5%)
Query: 459 DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-ND 517
D Q E L L + + +L+ +L S + QE AV L L+ D
Sbjct: 419 DVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVD 478
Query: 518 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL-SVIEDNKIKIGRSGAIGPLVDL 576
+K AI A I PL+ +L+TGS +A+E++A L++L ED + + +GA+ L+ L
Sbjct: 479 ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538
Query: 577 LGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLA 636
L NG P+G++ AA L L + + A I Q A+ L DL + ++D VL+ +A
Sbjct: 539 LKNGGPKGQEIAAKTLTKL-VRTADAATISQLTAL-LLGDLPESKVHVLDVLGHVLS-VA 595
Query: 637 TIPDGRVAIGQE-----NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG 691
++ D + +E + + L++++ +E AA+ L + ++ C + +
Sbjct: 596 SLED----LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE 651
Query: 692 AVPPLVALSQSGTPR-AKEKAQALLSYFR 719
+ P + L + T A + A+AL + R
Sbjct: 652 IINPCIKLLTNNTEAVATQSARALAALSR 680
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 4e-14
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG 580
A+ A + L+ +L + + AA L +LS DN + +G + LV LL +
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 581 TPRGKKDAATALFNLSIYHENKARIV-QAGAVKHLVDLMDPAAGMVDK-AVAVLANLAT 637
K A AL NL+ E+ IV +AG V LV+L+D + + K A L+NLA+
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 6e-13
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 15/227 (6%)
Query: 491 LVDMLHSSETKIQ--ENAVTALLNLS-INDNNKSAI-ANANAIEPLIHVLQTGSPEAREN 546
++ L + + Q E LL L+ + + AI +++ A+ L+ +L++G+ A+ N
Sbjct: 18 CIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVN 77
Query: 547 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY----HENK 602
AAA L L ED ++K+ G I PL+ LL +G+ +K AA A++ +S H
Sbjct: 78 AAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGS 137
Query: 603 ARIVQAGAVKHLVDLMDPAAGMVDKAV-----AVLANLATIPDGRVAIG-QENGIPVLVE 656
G V L D + P DK V L NL DG + + G+ +LV+
Sbjct: 138 KIFSTEGVVPSLWDQLQP-GNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVK 196
Query: 657 VVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 703
++ G++ + NAA+ L +L S VL GAV L+ L G
Sbjct: 197 LLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG 243
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-12
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 563 KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DP 620
+ ++G + LV LL + +++AA AL NLS ++N +V+AG + LV L+
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 621 AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 678
+V A+ L NLA D ++ + + G+P LV +++ + ++NA AL L +
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 82/317 (25%), Positives = 122/317 (38%), Gaps = 57/317 (17%)
Query: 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 508
LV+ L++ S + ++ L L H+ D R + + GA+ L+ +L + K QE A
Sbjct: 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAK 552
Query: 509 ALLNL--------------------------------------SINDNNKSAIANANAIE 530
L L S+ D + A +A+
Sbjct: 553 TLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALR 612
Query: 531 PLIHVLQTGSPEARENAA---ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKD 587
LI +L + E +E AA A +FS +D + I P + LL N T
Sbjct: 613 TLIQLLSSSKEETQEKAASVLADIFSSR--QDLCESLATDEIINPCIKLLTNNTEAVATQ 670
Query: 588 AATALFNL--SIYHENKARIVQAGAVKHLVDL-----MDPAAGMVDKAVAVLANLATIPD 640
+A AL L SI K A+K L+ L ++ A ++AV LANL + P+
Sbjct: 671 SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVA----EQAVCALANLLSDPE 726
Query: 641 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN---SSRFCSMVLQEGAVPPLV 697
E+ I L V+ G+ GK NAA AL QL + V G V LV
Sbjct: 727 VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALV 786
Query: 698 ALSQSGTPRAKEKAQAL 714
L S + ++AL
Sbjct: 787 DLLNSTDLDSSATSEAL 803
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 4e-09
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 6/197 (3%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
+R L++ L S+ +TQ +A + L + D +A IN + +L ++ +
Sbjct: 611 LRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQ 670
Query: 506 AVTAL--LNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 563
+ AL L+ SI +N K + A +AI+PLI + ++ S E E A L +L + +
Sbjct: 671 SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAE 730
Query: 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN----KARIVQAGAVKHLVDLMD 619
I PL +L GT GK++AA AL L + K + G V LVDL++
Sbjct: 731 ALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLN 790
Query: 620 PAAGMVDKAVAVLANLA 636
L LA
Sbjct: 791 STDLDSSATSEALEALA 807
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 71/305 (23%), Positives = 121/305 (39%), Gaps = 65/305 (21%)
Query: 438 DLSGIETQVRKLVEDLKSTSLDTQRE--ATAELRLLAKHNMDNRMVI-ANCGAINILVDM 494
D G V + +E L++ S Q + TA L LAK + R I ++ A+ +LV +
Sbjct: 7 DPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSL 66
Query: 495 LHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLF-- 552
L S + NA L L ++ + + I PL+ +L++GS EA++ AA ++
Sbjct: 67 LRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAV 126
Query: 553 SLSVIED---------------------NKIKIGRS------------------------ 567
S + D K +
Sbjct: 127 SSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATL 186
Query: 568 --GAIGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMDPA--A 622
G + LV LL +G + +AA+ L L + + ++++ AGAVK L+ L+
Sbjct: 187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV 246
Query: 623 GMVDKAVAVLANL-ATIPDGRVAIGQENGIPVLV--------EVVELGSARG-KENAAAA 672
+ +A L L + + + AI GIP L+ E ++ A+ +ENA A
Sbjct: 247 SVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGA 306
Query: 673 LLQLC 677
L +C
Sbjct: 307 LANIC 311
|
Length = 2102 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 477 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 514
+N+ + GA+ LV +L S + ++QE A AL NL+
Sbjct: 3 ENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 487 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI---ANANAIEPLIHVLQTGSP-E 542
A+ LV+ML++ Q A+ AL+ LS + +K+ NA+E L +L + S E
Sbjct: 1274 AVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLE 1333
Query: 543 ARENAA---ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599
+E+AA LF+ + I + I PL+ LL + + ++ AL L +
Sbjct: 1334 LKEDAAELCRVLFTNTRIRSTPAA---ARCIEPLISLLVSESSTAQEAGVCALDRL-LDD 1389
Query: 600 ENKARIVQA-GAVKHLVDLM 618
E A +V A GAV LV L+
Sbjct: 1390 EQLAELVAAHGAVVPLVGLV 1409
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 25/247 (10%)
Query: 468 LRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND----NNKSAI 523
L LA+ + N++ +A GA++ L L E A + LL + + ++SA
Sbjct: 1172 LTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILFSSPELRRHESAF 1231
Query: 524 ANANAIEPLIHVLQTGSPEARENAAATL---FSLSVIEDNKIKIGRSGAIGPLVDLLGNG 580
A+ L+ VL+ GS AR +AA L FS I D+++ A+ PLV++L G
Sbjct: 1232 G---AVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELA---RQAVQPLVEMLNTG 1285
Query: 581 TPRGKKDAATALFNLSIYHENKARI---VQAGAVKHLVDLMDPAAGMVDKAVA-----VL 632
+ + A AL LS + +KA V+ A+++L ++ + + K A VL
Sbjct: 1286 SESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVL 1345
Query: 633 ANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGA 692
I R I L+ ++ S+ +E AL +L + + +V GA
Sbjct: 1346 FTNTRI---RSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL-LDDEQLAELVAAHGA 1401
Query: 693 VPPLVAL 699
V PLV L
Sbjct: 1402 VVPLVGL 1408
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 80/315 (25%), Positives = 127/315 (40%), Gaps = 49/315 (15%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHS-SETKI 502
V+ LVE L + S Q A L L+ N + IA+ A+ L +L S S ++
Sbjct: 1275 VQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLEL 1334
Query: 503 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 562
+E+A L N +S A A IEPLI +L + S A+E L L E
Sbjct: 1335 KEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAE 1394
Query: 563 KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN-KARIVQAGAVKHLVDLMDPA 621
+ GA+ PLV L+ + A +AL L K +V+AG ++ ++D++ A
Sbjct: 1395 LVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPEA 1454
Query: 622 AGMVDKAVA----VLANLATIPDGRVAI------------------GQENGIPVLVEVVE 659
+ A+A +L N ++I G+ A GQ + + LV ++E
Sbjct: 1455 PDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILE 1514
Query: 660 ----------------------LGS-ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 696
L S ++ + AA LL F + + AV PL
Sbjct: 1515 KPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPL 1574
Query: 697 VALSQSGTPRAKEKA 711
V L+ G +++A
Sbjct: 1575 VRLAGIGILSLQQRA 1589
|
Length = 2102 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 475 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 514
+ +N+ + + G + LV++L S + ++ + A AL NLS
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 4/151 (2%)
Query: 488 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENA 547
+ +LV L +++ V+ L LSI D NK+ + IE L+ + +
Sbjct: 288 VALLVKALDRDNSELLILVVSFLKKLSIFDENKNEMEENGIIEKLLKLFPCQHEDLLNIT 347
Query: 548 AATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ 607
LF+LS + K+ G + LV LL N G A L++LS + K+
Sbjct: 348 LRLLFNLSFDTGLRPKMVNGGLLPKLVSLLDNDNHHGI--ALCVLYHLSCDDKAKSMFAY 405
Query: 608 AGAVKHLVDLMDPAAGM-VDKA-VAVLANLA 636
+ L+ ++ G VD +A+ NLA
Sbjct: 406 TDCIPMLMKMVLEGTGERVDLELIALCINLA 436
|
This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 516 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 555
+ NK A+ A A+ PL+ +L + E +E AA L +L+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 137 IPSDFCCPLSLELMTD----PVIVASGQTYERAFIKKWIDLGL-FVCP 179
S F CP+S E+MTD PV++ G Y R ++K G F CP
Sbjct: 7 FHSIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54
|
This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 644 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 703
A+ Q G+P LV ++ + AA AL L ++ V++ G +P LV L +S
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 704 TPR 706
Sbjct: 62 DEE 64
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 558 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 596
+NK + +GA+ PLV LL + +++AA AL NL+
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 75/306 (24%), Positives = 127/306 (41%), Gaps = 53/306 (17%)
Query: 440 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD------ 493
+G Q+ KL+ S+ + EA L L+ + + + IA+ G I L++
Sbjct: 230 AGAVKQLLKLLGQGNEVSV--RAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPS 287
Query: 494 ---MLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAAT 550
M +QENA+ AL N+ SA+ I L + + SP + A T
Sbjct: 288 KEFMQGEFAQALQENAMGALANIC---GGMSAL-----ILYLGELSE--SPRSPAPIADT 337
Query: 551 L----FSLSVIEDNKIKIGRSGAIGP------LVDLLGNGTPRGKKD----AATALFN-- 594
L ++L V + + A P LV LL + ++ A +L+
Sbjct: 338 LGALAYALMVFDS---SAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNA 394
Query: 595 -LSIYHENKARIVQAGAVKHLVDLMDPA-AGMVDKAVAVLANLATIPDGR---VAIGQEN 649
LS + A A K LV L+ A A + ++ + L++L A+G
Sbjct: 395 YLSRKLNH------AEAKKVLVGLITMATADVQEELIRALSSLCC--GKGGLWEALGGRE 446
Query: 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKE 709
G+ +L+ ++ L S + +E A A L L + G +PPLV L ++G+ +AKE
Sbjct: 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE 506
Query: 710 KAQALL 715
+ +L
Sbjct: 507 DSATVL 512
|
Length = 2102 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 26/283 (9%)
Query: 446 VRKLVEDLKSTSLDT-QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 504
V + VE + D Q EA L +A V+ + GA+ + + +L S+E ++E
Sbjct: 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVRE 175
Query: 505 NAVTALLNLSINDNN-KSAIANANAIEPLIHVLQTGSPEAR--ENAAATLFSL------- 554
AV AL N++ + + + A+EPL+ +L + + NA TL +L
Sbjct: 176 QAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235
Query: 555 ---SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS-IYHENKARIVQAGA 610
S I S A+ L L+ + P DA A+ LS +E ++ G
Sbjct: 236 PDWSNI---------SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGI 286
Query: 611 VKHLVD-LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENG-IPVLVEVVELGSARGKEN 668
LV+ L +A + A+ + N+ T D + + G + ++ ++
Sbjct: 287 PGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKE 346
Query: 669 AAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 711
A + + ++ V+ +PPL+ L S + K++A
Sbjct: 347 ACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA 389
|
Length = 526 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 516 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 555
+D NK A+ +A + L+ +L++ E + AA L +LS
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Query: 481 VIANCGAINILVDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTG 539
+ + G LV++L KIQ A+ ++ N+ + +D+ I N A++ +L +
Sbjct: 280 AVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP 339
Query: 540 SPEARENAAATLFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 598
R+ A T+ +++ +I+ + + I PL+ LL + + KK+A A+ N +
Sbjct: 340 KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399
Query: 599 HENKARI----VQAGAVKHLVDLMD 619
N+ I V G +K L DL+D
Sbjct: 400 GLNRPDIIRYLVSQGFIKPLCDLLD 424
|
Length = 526 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 528 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKD 587
AIEPLI +L++ S ++ AA L L E + I A+ PLV L G G ++
Sbjct: 1529 AIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQR 1588
Query: 588 AATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAA--GMVDKAVAVLANL 635
A AL ++S+ + AG + L ++ DP + + A +VL+N+
Sbjct: 1589 AVKALESISLSWPKA--VADAGGIFELSKVILQADPQPPHALWESAASVLSNI 1639
|
Length = 2102 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.95 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.94 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.94 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.92 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.92 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.9 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.9 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 99.87 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.86 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.78 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.76 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.74 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 99.69 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.69 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.54 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.53 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 99.52 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.48 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.43 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.41 | |
| COG5113 | 929 | UFD2 Ubiquitin fusion degradation protein 2 [Postt | 99.32 | |
| KOG2042 | 943 | consensus Ubiquitin fusion degradation protein-2 [ | 99.27 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.15 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.14 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 99.13 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.13 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 99.1 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.1 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.09 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.08 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 99.08 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 99.06 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.04 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.02 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 98.93 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.88 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.87 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.85 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.76 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.74 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.71 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.71 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 98.69 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.59 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 98.59 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 98.57 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.56 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 98.55 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.54 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.52 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.5 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.5 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.49 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.49 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 98.48 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.48 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.48 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.47 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.39 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 98.32 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.3 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.25 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.24 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.24 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 98.24 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.22 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 98.15 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.14 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 98.14 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.1 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.09 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 98.09 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 98.03 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.01 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 97.94 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.93 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.93 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.92 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.91 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.9 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 97.86 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.85 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.83 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.83 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.8 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.79 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 97.74 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.71 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.71 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.65 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.64 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.63 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.63 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.59 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.58 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.58 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 97.56 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.55 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.55 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.52 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 97.51 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 97.51 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.5 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.48 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 97.46 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.43 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.39 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.39 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.37 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.31 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.26 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.21 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.21 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.2 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 97.11 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.1 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.07 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.97 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 96.97 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.96 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.95 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.77 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 96.77 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.77 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.74 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 96.7 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.65 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 96.61 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 96.57 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.56 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.53 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.35 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 96.33 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 96.28 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.26 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.23 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.23 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.23 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 96.18 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 96.16 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.16 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 96.11 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 96.05 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.03 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.01 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 96.01 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 96.0 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 95.98 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 95.95 | |
| KOG2979 | 262 | consensus Protein involved in DNA repair [General | 95.9 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 95.84 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 95.81 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.79 | |
| KOG4367 | 699 | consensus Predicted Zn-finger protein [Function un | 95.79 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 95.69 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 95.65 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.64 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.63 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 95.56 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.5 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 95.5 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 95.46 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.46 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.32 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 95.28 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 95.25 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 95.25 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 95.24 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 95.17 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 95.17 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 95.14 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 95.07 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.06 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 94.86 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 94.5 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 94.44 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 94.37 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 94.2 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 94.14 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 94.13 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.09 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.04 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 94.03 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 94.0 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 93.8 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.72 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 93.71 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 93.48 | |
| KOG3113 | 293 | consensus Uncharacterized conserved protein [Funct | 93.47 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 93.33 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 93.3 | |
| PF02891 | 50 | zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 | 93.27 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 93.11 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 93.0 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 92.94 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 92.85 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 92.81 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 92.79 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 92.78 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 92.75 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 92.7 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 92.63 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 92.61 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 92.55 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 92.47 | |
| PF14447 | 55 | Prok-RING_4: Prokaryotic RING finger family 4 | 92.46 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 92.34 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 92.28 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 92.25 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 92.15 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 91.96 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 91.87 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 91.76 | |
| COG5109 | 396 | Uncharacterized conserved protein, contains RING Z | 91.72 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 91.43 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 91.42 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.13 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 91.04 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 90.95 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 90.87 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 90.86 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 90.79 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 90.55 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.49 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 90.42 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 90.34 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 90.32 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.23 | |
| KOG0883 | 518 | consensus Cyclophilin type, U box-containing pepti | 90.19 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 90.04 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 89.74 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 89.59 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 89.5 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 89.48 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 88.98 | |
| KOG4464 | 532 | consensus Signaling protein RIC-8/synembryn (regul | 88.58 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 88.4 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 88.39 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 88.37 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 88.31 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 88.26 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 88.18 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 88.08 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 87.92 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.55 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 87.23 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 87.18 | |
| KOG3161 | 861 | consensus Predicted E3 ubiquitin ligase [Posttrans | 87.17 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 86.53 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 86.31 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 86.28 | |
| KOG0827 | 465 | consensus Predicted E3 ubiquitin ligase [Posttrans | 85.87 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 85.63 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 84.91 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 84.44 | |
| KOG1571 | 355 | consensus Predicted E3 ubiquitin ligase [Posttrans | 84.14 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 84.0 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 83.9 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 83.38 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 83.17 | |
| COG5219 | 1525 | Uncharacterized conserved protein, contains RING Z | 82.96 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 82.71 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 82.49 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 82.45 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 82.25 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 81.8 | |
| COG5627 | 275 | MMS21 DNA repair protein MMS21 [DNA replication, r | 81.62 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 81.5 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 81.43 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 81.28 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 81.25 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 80.94 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 80.67 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 80.64 | |
| KOG4185 | 296 | consensus Predicted E3 ubiquitin ligase [Posttrans | 80.62 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 80.55 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 80.52 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 80.46 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 80.35 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=282.01 Aligned_cols=279 Identities=24% Similarity=0.291 Sum_probs=251.0
Q ss_pred hHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 004806 442 IETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDN 518 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~~I~~-~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~ 518 (729)
....+..|++.|+++ +++.|..|+..|+.|++.++++|..|++ .|+||.|+.+|.+++..++++|+.+|.+|+.++.
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 367899999999976 7889999999999999999999999997 7999999999999999999999999999999999
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC---cchhhh-hhccCcHHHHHHhhcCCC---HHHHHHHHHH
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIK-IGRSGAIGPLVDLLGNGT---PRGKKDAATA 591 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~---~e~k~~-I~~~g~I~~Lv~LL~~~~---~~v~~~Al~a 591 (729)
++..|+..|+|++|+.+|++++++.|++|+++|++|+.+ +.++.. ++..|+|+.|+.+|++++ ..++..|+.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 445545 456899999999999874 3356778899
Q ss_pred HHhcccCcHHHHH-HHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC-cchHHHHHhCCcHHHHHHHHccC-CHHHHH
Q 004806 592 LFNLSIYHENKAR-IVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELG-SARGKE 667 (729)
Q Consensus 592 L~nLs~~~en~~~-lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke 667 (729)
|+|||.+++++.. +++.|+|+.|+.+| +.+..++..|+.+|.+++.+ ++++..+++.|+|+.|+++|+++ ++.+++
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 9999999998865 58999999999999 46788899999999988874 67899999999999999999875 569999
Q ss_pred HHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCC---------HHHHHHHHHHHHHhhc
Q 004806 668 NAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT---------PRAKEKAQALLSYFRN 720 (729)
Q Consensus 668 ~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~---------~rvr~~A~~lL~~L~~ 720 (729)
+|+++|++||.++.+++..+++.|+++.|+.++.... ...++.|.|+|.++.+
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999998644 3458999999999876
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=245.48 Aligned_cols=279 Identities=23% Similarity=0.289 Sum_probs=250.8
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.|+.+|+.|. ..++..|.+|+++|.++|.++.+....++++|++|.|+.+|.+++..+++.|+|+|+|++.+ +..|
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence 478999999997 55689999999999999999999999999999999999999999999999999999999987 6678
Q ss_pred HHHHhcCCHHHHHHHhcCCCH-HHHHHHHHHHHHhccCcchhhhhhc-cCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-
Q 004806 521 SAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI- 597 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~-e~r~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~- 597 (729)
..+...|++++|+.++...+. .+..+++|+|.||+........+.. ..++|.|..+|.+.+..+..+|+|||.+|+.
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 899999999999999988774 7889999999999987654444332 4889999999999999999999999999996
Q ss_pred CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch-HHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHH
Q 004806 598 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVE-LGSARGKENAAAALL 674 (729)
Q Consensus 598 ~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~I~~Lv~lL~-s~s~~~ke~A~~aL~ 674 (729)
.++..+.+++.|+++.|+.+| ..+..++..|+.+++|++...+. .+.++..|+++.|..++. +.....+..|+|+|.
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 556777888999999999999 46667888999999999985555 677789999999999998 556668999999999
Q ss_pred HHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 675 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 675 nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
|+++++.++.+.|++.|.+|.|+.+++++.-++|+.|+|++.++...
T Consensus 348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999988653
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=269.85 Aligned_cols=279 Identities=23% Similarity=0.322 Sum_probs=246.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
.+.++.|+++|++++...|..|++.|++++..+.+++..+.++|+||.|+.+|.+++..++++|+|+|.||+.++.+...
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999987655444
Q ss_pred -HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh-------------------------------------hh-
Q 004806 523 -IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-------------------------------------IK- 563 (729)
Q Consensus 523 -I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k-------------------------------------~~- 563 (729)
+.+.|+|++|+++|++++.+.+..|+++|++|+...+.. ..
T Consensus 525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 557899999999999999999999999999996422111 01
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC--Cc
Q 004806 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLAT--IP 639 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~--~~ 639 (729)
....|+++.|++||++++..+++.|+++|.|++. .++++..++..|+|+.|+.+|. .+..+...++++|.+|+. ..
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~ 684 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE 684 (2102)
T ss_pred hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH
Confidence 1135899999999999999999999999999988 5567888999999999999994 667888999999999996 33
Q ss_pred chHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 640 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 640 e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
+.+..+++.|+|+.|+++|...+..+++.|+.+|.|++.+.+ .+..+..+|+++.|++++++|++++|+.|.++|..|.
T Consensus 685 ~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 685 NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 446678899999999999999999999999999999999876 6677888999999999999999999999999888776
Q ss_pred cCc
Q 004806 720 NQR 722 (729)
Q Consensus 720 ~~~ 722 (729)
+..
T Consensus 764 ~~~ 766 (2102)
T PLN03200 764 KHF 766 (2102)
T ss_pred hCC
Confidence 654
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=223.18 Aligned_cols=275 Identities=24% Similarity=0.367 Sum_probs=254.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 524 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~ 524 (729)
.+..|+..+..+..++|+.+..+|.+|+.- ..+|..|+..|++.+|..+-+++|..+|.+|..+|.|+....++|+.++
T Consensus 127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV 205 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV 205 (550)
T ss_pred ChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence 345666666777788999999999999986 5899999999999999998899999999999999999999999999999
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccC--cHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 525 NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSG--AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g--~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
.+|++|.|+.+|++++.+++++++.+|.+++.+...|+.+.+.+ .++.|++|+.+++++++-.|..+|.||+...+..
T Consensus 206 ~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 206 HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 99999999999999999999999999999999999999999886 9999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhhCC
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQLCTNS 680 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~A~~aL~nL~~~~ 680 (729)
..++++|.+|.+++|| ++.....-..+.++.|++.++-+...|+++|++..||.+|+.+ +++.+-+|+.+||+|+..+
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 9999999999999999 4666777888999999999999989999999999999999875 5669999999999999988
Q ss_pred HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 681 ~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
..++..+.+.|+||+|..|+..+.-.++..-..++..|.-
T Consensus 366 e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 366 EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 8899999999999999999999998888887777776654
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=222.63 Aligned_cols=277 Identities=25% Similarity=0.339 Sum_probs=258.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
.+.+..|.++-++.+..+|++++.+|.+++. +.+||..++.+|++|.|+.+|++.|..+|+.++++|.|++.+..+|+.
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 4567788887788889999999999999987 678999999999999999999999999999999999999999999999
Q ss_pred HHhcC--CHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcH
Q 004806 523 IANAN--AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 523 I~~~g--~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e 600 (729)
+++.+ .++.|+.+++++++.++..|..+|.||+.+.+++..|++.|.+|.+++||+++.-......+.++.|++..+-
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 99987 9999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred HHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 601 NKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
|..-++++|.+..|+.+|+ ++.++...|+.+|+||+. .+..+..|.+.|+|+.+.+++..+.-.+++....++..|+
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 9999999999999999994 567799999999999998 6778999999999999999999999999999899999888
Q ss_pred hCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 678 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 678 ~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.++. .+..+.+.|.++.|+.+..+.+.+++..|+++|-+|...
T Consensus 405 l~d~-~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 405 LNDN-DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred hccc-cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 8765 678899999999999999999999999999999888653
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=213.87 Aligned_cols=278 Identities=22% Similarity=0.245 Sum_probs=244.1
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.|+.+|+++. ....-.|.+|++.|.+++.+.......++++|++|.++.+|.+...+++++|+|+|+|++.+ +..|
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 478999999995 44555688999999999998877777888999999999999999999999999999999987 5678
Q ss_pred HHHHhcCCHHHHHHHhcCCC--HHHHHHHHHHHHHhccCcch---hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 521 SAIANANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDN---KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~--~e~r~~Aa~aL~nLS~~~e~---k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
..+.+.|++.+|+.+|.+.. ..+..++.++|.||+..... -..| ..++|.|.+|+.+.++++..+|+|||..|
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 88999999999999998764 47889999999999974222 2222 36789999999999999999999999999
Q ss_pred ccCc-HHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch-HHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 004806 596 SIYH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAA 672 (729)
Q Consensus 596 s~~~-en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~a 672 (729)
+..+ +..+.+++.|..+.|+++| .++..+...|+..++|+.+..+. .+.+++.|+++.+..+|.+....++..|||.
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 9854 5667788999999999999 56777888999999999985555 5677899999999999999888999999999
Q ss_pred HHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 673 LLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 673 L~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
|.|+.+++.++.+.|++.+.+|+|+.++.+-.-++++.|.|++.+.....
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg 400 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999988876543
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-22 Score=219.12 Aligned_cols=280 Identities=23% Similarity=0.279 Sum_probs=245.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCH-HHHHHHHHHHHHhhcCCcc-H
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSET-KIQENAVTALLNLSINDNN-K 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~-~v~e~Al~aL~nLs~~~~~-k 520 (729)
.+.|+.++.++.+.+.+++.+|+++|.+++.+++..|..+.+.|+++.|+.++...+. .+..+++|+|.||+.+.+. -
T Consensus 151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 4678899999999999999999999999999999999999999999999999988776 6789999999999987532 2
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 599 (729)
..-.-..+++.|..+|.+.++++...|+++|.+|+... +.-..+++.|+++.|+++|.+....++.-|++++.|+....
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~ 310 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS 310 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence 22233468999999999999999999999999999754 44455677899999999999999999999999999998854
Q ss_pred -HHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 004806 600 -ENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 675 (729)
Q Consensus 600 -en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~n 675 (729)
...+.+++.|+++.|..++. +...++..|++++.|++. ..+..++++++|.+|.|+.+|.++..+.+..|+|++.|
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN 390 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISN 390 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHh
Confidence 55677889999999999994 445688999999999988 55678999999999999999999999999999999999
Q ss_pred HhhCC-HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 676 LCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 676 L~~~~-~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
++... ++....+++.|+|++|+.++...+.++...+...|.++....
T Consensus 391 ~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 391 LTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred hcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 99875 567788899999999999998888888889999888886543
|
|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-23 Score=172.81 Aligned_cols=73 Identities=47% Similarity=0.862 Sum_probs=64.3
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCC
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNV 209 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~ 209 (729)
+|++|+||||++||+|||++++||||||.+|++|+..++.+||+|+++++..+|+||..||+.|++|+.+|.+
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~ 73 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK 73 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence 6999999999999999999999999999999999999778999999999999999999999999999999853
|
Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A .... |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-21 Score=197.31 Aligned_cols=278 Identities=22% Similarity=0.247 Sum_probs=242.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHHhhcCCcc-
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLSINDNN- 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d--~~v~e~Al~aL~nLs~~~~~- 519 (729)
.+.|+.++++|.+++.+++.++.++|.+++.+++..|..+.+.|++..|+.+|.+.- ..+..++.|.|.||+...+.
T Consensus 156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 467899999999999999999999999999999999999999999999999998764 57889999999999975322
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh-hhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k-~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
...-.-..++|.|.+++.+.++++...|+++|.+|+-.+..+ ..+.+.|..+.|+++|.+++..++.-|++.+.|+...
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 111112346899999999999999999999999999865544 5566789999999999999999999999999999874
Q ss_pred -cHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 004806 599 -HENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 675 (729)
Q Consensus 599 -~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~n 675 (729)
+...+.+++.|+++.+..+|+ +...++..||+++.|++. +.+..+++++.+.+|.|+++|..-.-..+..|||++.|
T Consensus 316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567789999999999994 567889999999999987 66778999999999999999999999999999999999
Q ss_pred HhhCC---HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 676 LCTNS---SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 676 L~~~~---~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
..++. |+....++..|.+.+|+.++..-+.++.+.|..+++++-+
T Consensus 396 atsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 396 ATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred hhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 98765 6778888999999999999999999999999988877644
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-18 Score=193.10 Aligned_cols=281 Identities=23% Similarity=0.257 Sum_probs=230.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---CccH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN---DNNK 520 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~---~~~k 520 (729)
..++..+.+|.+.++.+|..|+..|..+++.+.+.+..+.+.|+|+.||.+|.+.+.+++.+|+++|.||... +.||
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3468889999999999999999999999999999999999999999999999999999999999999999864 4589
Q ss_pred HHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC--------------CHHHH
Q 004806 521 SAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--------------TPRGK 585 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~--------------~~~v~ 585 (729)
..|.+.++|+.++++|+. ++.+++++++++||||++++..|..|+. .++..|.+.+-.+ +..+.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 999999999999999986 7899999999999999999888887764 4456665543211 25678
Q ss_pred HHHHHHHHhccc-CcHHHHHHHH-cCcHHHHHHhc-------CCCHHHHHHHHHHHHHHhCCcc----------------
Q 004806 586 KDAATALFNLSI-YHENKARIVQ-AGAVKHLVDLM-------DPAAGMVDKAVAVLANLATIPD---------------- 640 (729)
Q Consensus 586 ~~Al~aL~nLs~-~~en~~~lv~-~G~V~~Lv~LL-------~~~~~v~e~Al~~L~nLa~~~e---------------- 640 (729)
..+..+|.|++. ..+.++++.+ .|+|..|+.++ +.+...+++++.+|.||...-+
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 899999999988 7789999987 89999999987 2567889999999999965221
Q ss_pred -----------------hHHH---------------------HHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCH
Q 004806 641 -----------------GRVA---------------------IGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 641 -----------------~r~~---------------------i~~~g~I~~Lv~lL-~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.+.. +.+..+|..-..+| .+.++...|.++.+|-||+....
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0010 00111233323344 35678899999999999998763
Q ss_pred ----hhHHHH-HhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcCcC
Q 004806 682 ----RFCSMV-LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHGN 725 (729)
Q Consensus 682 ----~~~~~v-l~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~~~ 725 (729)
..+..+ .++.+++.|+.+++.+++++.+.+..+|++|+.....+
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk 600 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK 600 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh
Confidence 344555 77999999999999999999999999999998876544
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=185.06 Aligned_cols=276 Identities=19% Similarity=0.253 Sum_probs=225.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
++.|+.|++.|.+++.+....++..|.+|+.. .+|+..+.+.|+|+.|+.++.+++.+++..|+.+|.|||.++..|..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 67899999999999999999999999999995 57999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHhcccCcHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHEN 601 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs~~~en 601 (729)
++..|++|.|+.+|.++ ..+..+..+|.+||.++++|..+...++++.|+++|-. +..++...++.++.||+.++.|
T Consensus 368 mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred HHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 99999999999999765 45667999999999999999999999999999997655 4666667777788888888777
Q ss_pred HHHHHHcCcHHHHHHhc-C--------------------------------------CCHHHHHHHHHHHHHH-------
Q 004806 602 KARIVQAGAVKHLVDLM-D--------------------------------------PAAGMVDKAVAVLANL------- 635 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~--------------------------------------~~~~v~e~Al~~L~nL------- 635 (729)
.+.+++.|+++.|++.. . .+.+..-.++++|+||
T Consensus 446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDW 525 (708)
T ss_pred HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCH
Confidence 77777766666555421 0 1122333455666665
Q ss_pred -------------------------------------hCCcchHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHH
Q 004806 636 -------------------------------------ATIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQL 676 (729)
Q Consensus 636 -------------------------------------a~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL 676 (729)
|..++....+++.|.++.|+++|.. .+.+..-..+.+++++
T Consensus 526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l 605 (708)
T PF05804_consen 526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL 605 (708)
T ss_pred HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 4444455566677788888888865 4677778888999999
Q ss_pred hhCCHhhHHHHH-hCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 677 CTNSSRFCSMVL-QEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 677 ~~~~~~~~~~vl-~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
..+.. .+..++ +.+++..|+.++++.++.+++.|-.+|.++..+.
T Consensus 606 l~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 606 LFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HcChH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 98866 555554 4788999999999999999999999888886643
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-16 Score=181.81 Aligned_cols=253 Identities=21% Similarity=0.247 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCC
Q 004806 460 TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG 539 (729)
Q Consensus 460 vq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~ 539 (729)
..+.+...|.+|+. +..+...+.+.|.|+.|+.+|++++.+++..++++|.+||...+||..+.+.|+|+.|++++.++
T Consensus 265 Llrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 265 LLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC
Confidence 34567778999998 56888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-
Q 004806 540 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM- 618 (729)
Q Consensus 540 ~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL- 618 (729)
+.+++..++.+|+|||.+++.|..|+..|++|.|+.+|.+++ .+..|+.+|+|||..++++..+...++++.|++++
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHH
Confidence 999999999999999999999999999999999999998764 44668999999999999999999999999999987
Q ss_pred C-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHH
Q 004806 619 D-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLV 697 (729)
Q Consensus 619 ~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv 697 (729)
. ++..+...+++++.||+.++...+.+++.++++.|++......... .+.+|.|++.+++..+..+. +.+..|+
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~ 496 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGDLA 496 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHHHH
Confidence 3 4555556789999999999999999999999999998876543322 34689999999865555554 3788888
Q ss_pred HhhhCCC-HHHHHHHHHHHHHhhc
Q 004806 698 ALSQSGT-PRAKEKAQALLSYFRN 720 (729)
Q Consensus 698 ~Ll~sg~-~rvr~~A~~lL~~L~~ 720 (729)
.++..+. +...-.+.++|.+|..
T Consensus 497 ~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 497 KIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHhhcCCcHHHHHHHHHHHHhccc
Confidence 9888765 6677777778877754
|
|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-17 Score=135.30 Aligned_cols=63 Identities=52% Similarity=0.892 Sum_probs=60.2
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 203 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~ 203 (729)
+|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++.++++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999988 46799999999999999999999999988
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-16 Score=182.90 Aligned_cols=262 Identities=25% Similarity=0.293 Sum_probs=225.2
Q ss_pred HHH-HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC------------CHHHHHHHHHHHHHhhcC-CccHHHHHh
Q 004806 460 TQR-EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS------------ETKIQENAVTALLNLSIN-DNNKSAIAN 525 (729)
Q Consensus 460 vq~-~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~------------d~~v~e~Al~aL~nLs~~-~~~k~~I~~ 525 (729)
-|. .|+..|-.+++ +++.|..+.+.|++..+..||.-+ ...++..|..+|-||.+. ..||..+..
T Consensus 313 H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 344 67778888888 679999999999999999988521 345889999999999875 567777765
Q ss_pred -cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-c-hhhhhhccCcHHHHHHh-hcCCCHHHHHHHHHHHHhccc-CcH
Q 004806 526 -ANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-D-NKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSI-YHE 600 (729)
Q Consensus 526 -~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e-~k~~I~~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~-~~e 600 (729)
.|++..||..|.+...++..-.+.+|.||++.. . .|..+-+.|-+..|+.. |+.......+..+.|||||+. ..+
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 499999999999998999999999999999943 3 45666667999998876 566666788899999999988 679
Q ss_pred HHHHHHH-cCcHHHHHHhcC-----CCHHHHHHHHHHHHHHhC----CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHH
Q 004806 601 NKARIVQ-AGAVKHLVDLMD-----PAAGMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAA 670 (729)
Q Consensus 601 n~~~lv~-~G~V~~Lv~LL~-----~~~~v~e~Al~~L~nLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~ 670 (729)
|+..|.. .|++..||.+|. ....+++.+-++|.|++. +++.|+.+.+.+++..|+..|.+.+-.+.-++|
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 9999998 899999999994 235678999999999754 778899999999999999999999999999999
Q ss_pred HHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 671 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 671 ~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
.+||||...+++.++.+++.|+|+.|..|+.+.+..+.+-+...|++|-+++
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999888888888888887766
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=148.37 Aligned_cols=275 Identities=17% Similarity=0.236 Sum_probs=233.6
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCcc---
Q 004806 446 VRKLVEDLK--STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNN--- 519 (729)
Q Consensus 446 V~~Lv~~L~--s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~~~~~--- 519 (729)
+..+++.|. .++.++-...+..++.-|..++.||..+.+.++.+++...|... ..++...+.+++..|..+++.
T Consensus 147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~ 226 (461)
T KOG4199|consen 147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV 226 (461)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence 445555554 55677788889999998888999999999999999999877654 335888889999999876654
Q ss_pred -------HHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCC----HHHHHH
Q 004806 520 -------KSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGT----PRGKKD 587 (729)
Q Consensus 520 -------k~~I~~~g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~----~~v~~~ 587 (729)
.+.|+..|++..|++.|..+ ++.+......+|..|+..++.+..|.+.|++..|+.++.+.+ ....+.
T Consensus 227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence 45677788999999999876 488888999999999999999999999999999999998743 335678
Q ss_pred HHHHHHhcccCcHHHHHHHHcCcHHHHHHhc---CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccC--
Q 004806 588 AATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELG-- 661 (729)
Q Consensus 588 Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL---~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~-- 661 (729)
++..|..|+.++.++..+|+.|+.+.++.++ .+++-+++.++.++..||- .++.-..+++.|+-...++-|+..
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence 8889999999999999999999999999988 4678888999999999998 777778888999988999999763
Q ss_pred CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 662 SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 662 s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
...++.+|++.+.|+...+..++..++.. +++.|+......++.....|..+|+-|..+
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 56799999999999999998888877776 589999999999988888899999876443
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-12 Score=137.02 Aligned_cols=191 Identities=22% Similarity=0.279 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
.+.++.|+.+|+ +.++.+|..|+..+.+.+. .+.++..|.+.|+++.+..+|..+++.+++.|+.+|.|++.+.+++.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 467899999999 5689999999999999887 56899999999999999999999999999999999999999998888
Q ss_pred HHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc
Q 004806 522 AIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~--~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 599 (729)
.|-. +++.+++.+.+. +.+++..++++|.||+..++++..+. +.++.++.+|..++..++..++++|.||+.++
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 8743 588888766554 57899999999999999888877774 47999999999999999999999999999999
Q ss_pred HHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCC
Q 004806 600 ENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~ 638 (729)
.+...++.++++..++.|++ .+.++...++.++.||..+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999994 4578889999999999763
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=154.62 Aligned_cols=276 Identities=22% Similarity=0.255 Sum_probs=220.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh--hHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD--NRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~--nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
+.|+.||.+|.+.+.++|.+|+++|++|.+.+.. |+..|.+.++|+.|+.+|+. .|.++++....+|+||+.++..|
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK 354 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALK 354 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHH
Confidence 4688999999999999999999999999998766 99999999999999999987 69999999999999999887666
Q ss_pred HHHHhcCCHHHHHHHhcCC--------------CHHHHHHHHHHHHHhcc-Ccchhhhhhcc-CcHHHHHHhhcC-----
Q 004806 521 SAIANANAIEPLIHVLQTG--------------SPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGN----- 579 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~--------------~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~-g~I~~Lv~LL~~----- 579 (729)
..|+.. ++..|..-+-.+ ..++-.+++++|.|++. ..+.+..+.+. |.|..|+.+++.
T Consensus 355 ~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 355 MLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 665543 445544433111 24567799999999998 78888888876 899999888862
Q ss_pred -CCHHHHHHHHHHHHhcc--------------------------------------------------------------
Q 004806 580 -GTPRGKKDAATALFNLS-------------------------------------------------------------- 596 (729)
Q Consensus 580 -~~~~v~~~Al~aL~nLs-------------------------------------------------------------- 596 (729)
.+....++|+.+|.||+
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence 24445555555555554
Q ss_pred ----------------------------------cC-----cHHHHHH-HHcCcHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 004806 597 ----------------------------------IY-----HENKARI-VQAGAVKHLVDLMD-PAAGMVDKAVAVLANL 635 (729)
Q Consensus 597 ----------------------------------~~-----~en~~~l-v~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nL 635 (729)
.. ...+..+ .++.+.+.|++||+ .+..++..++++|.||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 21 1111222 45667788888884 6778899999999999
Q ss_pred hCCcchHHHHHhCCcHHHHHHHHccC------CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCC-HHHH
Q 004806 636 ATIPDGRVAIGQENGIPVLVEVVELG------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT-PRAK 708 (729)
Q Consensus 636 a~~~e~r~~i~~~g~I~~Lv~lL~s~------s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~-~rvr 708 (729)
+.+...+..|. .++++.|+..|... +......++.+|+++...+..+...+++.+++++|+.|..+.. +++.
T Consensus 594 s~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~ 672 (717)
T KOG1048|consen 594 SRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEF 672 (717)
T ss_pred ccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHH
Confidence 99999988887 67899999999652 3678888999999999999989999999999999999998864 7899
Q ss_pred HHHHHHHHHhhcC
Q 004806 709 EKAQALLSYFRNQ 721 (729)
Q Consensus 709 ~~A~~lL~~L~~~ 721 (729)
+.|..+|..|-.+
T Consensus 673 kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 673 KAASSVLDVLWQY 685 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888777554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=136.30 Aligned_cols=172 Identities=23% Similarity=0.262 Sum_probs=122.2
Q ss_pred hHHHHHHHhhhcchhhH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHHHHHH-------
Q 004806 30 SLELCSQKIKHMEYEQT--SSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEIL-IEAVALEKLKENAEQ------- 99 (729)
Q Consensus 30 ~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~~~l~l~~~~~~~-~e~~~l~~~~~~~~~------- 99 (729)
++++|....+.++ |.| +..-...++++.-..+.+.....+.|+++.+....+-+ .+...+....+.+..
T Consensus 83 flg~~~l~s~~~~-eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~ 161 (284)
T KOG4642|consen 83 FLGQWLLQSKGYD-EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDREREL 161 (284)
T ss_pred HHHHHHHhhcccc-HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhhHHHHHHHHhccchhhHH
Confidence 5566666666665 444 33444478888888888999999999999987766554 232233322221111
Q ss_pred ---Hhh--hc-hH------------HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccCccccccCceecCCCcc
Q 004806 100 ---AEK--AG-EA------------EFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQT 161 (729)
Q Consensus 100 ---~~~--~~-~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~~G~t 161 (729)
.++ .. .. +.+..|.++..++.+ ...+.++|+.+||.|+++||+|||+.|+|.|
T Consensus 162 s~~~~N~~sde~~k~~q~~~~~~~d~~~kel~elf~~v~e---------~rk~rEvpd~lcgkIt~el~~~pvi~psgIt 232 (284)
T KOG4642|consen 162 SEWQENGESDEHLKTMQVPIEQDHDHTTKELSELFSKVDE---------KRKKREVPDYLCGKITLELMREPVITPSGIT 232 (284)
T ss_pred HHHHHcCCChHHHhhhcchhHHHHHHHHHHHHHHHHHHHH---------HhccccccchhhhhhhHHhhcCCccCccccc
Confidence 000 00 00 112222222222222 1246779999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 004806 162 YERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL 211 (729)
Q Consensus 162 y~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~~ 211 (729)
|+|..|.+|+..-+..+|+||.+|+..+++||+.|+..|..|..+|+|..
T Consensus 233 y~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~ 282 (284)
T KOG4642|consen 233 YDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWAD 282 (284)
T ss_pred hhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccccc
Confidence 99999999999877889999999999999999999999999999999863
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-11 Score=128.71 Aligned_cols=267 Identities=15% Similarity=0.247 Sum_probs=223.7
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhh-cCCccHHHHHhcCCH
Q 004806 453 LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLS-INDNNKSAIANANAI 529 (729)
Q Consensus 453 L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs-~~~~~k~~I~~~g~I 529 (729)
-.+++..+..+++..|..+....++ +.++.+...++.+|.. ++.++....+..+..-+ .++.||..+++.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 4466777788899999988876554 5567888999999854 46777777777776655 468899999999999
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhh----------hhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhccc
Q 004806 530 EPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKI----------KIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI 597 (729)
Q Consensus 530 ~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~----------~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~ 597 (729)
+.+...|. .+...+.....+++..|..+++.|. .|...|++..|++.|+-+ ++.+...++.+|..|+.
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 99997665 4556688888999999988777553 455568899999999876 78899999999999999
Q ss_pred CcHHHHHHHHcCcHHHHHHhcCC--C---HHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHc--cCCHHHHHHHH
Q 004806 598 YHENKARIVQAGAVKHLVDLMDP--A---AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE--LGSARGKENAA 670 (729)
Q Consensus 598 ~~en~~~lv~~G~V~~Lv~LL~~--~---~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~--s~s~~~ke~A~ 670 (729)
.++.+..+.+.|++..|+.++++ + ..+...++.+|..|+.+++.+..|++.|+.+.++.++. +.+|.+.+.++
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999999999999942 2 33567799999999999999999999999999999984 47899999999
Q ss_pred HHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCC--HHHHHHHHHHHHHhhcCcC
Q 004806 671 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT--PRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 671 ~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~--~rvr~~A~~lL~~L~~~~~ 723 (729)
.++.-||...|++...+++.|+-...++-|+..- ..+++.|.++++++..+.+
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999888888887653 6799999999999976543
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=159.98 Aligned_cols=224 Identities=21% Similarity=0.249 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CccHHHHHhcCCHHHHHH
Q 004806 458 LDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSIN--DNNKSAIANANAIEPLIH 534 (729)
Q Consensus 458 ~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~--~~~k~~I~~~g~I~~Lv~ 534 (729)
..+++.|..+|.+|++++..|+..+... |++..+|..|.+...+++.....+|.||++. .+.|..+.+.|-+..|+.
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 3467889999999999999999998875 9999999999998889988889999999985 455777888899999887
Q ss_pred H-hcCCCHHHHHHHHHHHHHhcc-Ccchhhhhhcc-CcHHHHHHhhcCC----CHHHHHHHHHHHHhccc----CcHHHH
Q 004806 535 V-LQTGSPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGNG----TPRGKKDAATALFNLSI----YHENKA 603 (729)
Q Consensus 535 l-L~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~-g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~----~~en~~ 603 (729)
. |+..........+.+||||+. ..+||..|..- |++..||.+|... ...+.+.|-.+|.|++. ..+.|+
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 5 455555677788999999998 58899999875 9999999999864 45788889999999875 677888
Q ss_pred HHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 604 RIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.+.+.+++..|+..|+ ....++.++|++||||.. +++.++.+++.|+|+.|..+|.+.+....+-++.+|.||..+.+
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 9999999999999995 567889999999999977 88999999999999999999999999999999999999998875
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.6e-12 Score=129.73 Aligned_cols=194 Identities=20% Similarity=0.204 Sum_probs=170.0
Q ss_pred HhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh
Q 004806 483 ANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK 561 (729)
Q Consensus 483 ~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k 561 (729)
.+.+.++.|+.+|+. .|+.+++.|+.+|.|.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.||+.+.+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 456778999999985 6899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhccCcHHHHHHhhcCC--CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC
Q 004806 562 IKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 562 ~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~ 638 (729)
..|- ..++.+++.+.+. +..++..++++|.||+..++....+. +.++.++.+| ..+..++..++.+|.||+.+
T Consensus 89 ~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 8874 3577777765544 67899999999999998877766554 4789999998 46778889999999999999
Q ss_pred cchHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhhCC
Q 004806 639 PDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQLCTNS 680 (729)
Q Consensus 639 ~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~A~~aL~nL~~~~ 680 (729)
+.....++...++..++.++... +.....+++....||..+-
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 99989998889999999999774 6778889999999997653
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-11 Score=134.81 Aligned_cols=277 Identities=16% Similarity=0.167 Sum_probs=224.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
.....+.|...|.++++.++..++..|+.++.++......+.+.+.++.++.+|.+++..+...|+.+|.+|+.++....
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 46788899999999999999999999999999887667777888999999999999999999999999999998887777
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e 600 (729)
.+...+.+..|..++...+..+|..+..++.+++.. ++....+...|+++.++..|.+.|.-++..|+.+|..|+..+.
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 788888899999999988888999999999999874 5566667778999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHHhcC---CCH---H-HHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 004806 601 NKARIVQAGAVKHLVDLMD---PAA---G-MVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 673 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL~---~~~---~-v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL 673 (729)
+...+.+.|+++.|+.++. .++ . +.-..+...++++......-.-.-...+..|.+++.+.++..+..|..+|
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 9999999999999999982 222 1 22334567777777522211111123456677777889999999999999
Q ss_pred HHHhhCCHhhHHHH-HhC-CC----HHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 674 LQLCTNSSRFCSMV-LQE-GA----VPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 674 ~nL~~~~~~~~~~v-l~~-G~----v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
..+|.... ....+ ... +. +..+.....++...+|..+..+|..+-
T Consensus 315 g~igst~~-G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 315 GQIGSTVE-GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHhCCHH-HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99997654 44444 333 23 444555556677889999999888874
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-12 Score=138.06 Aligned_cols=129 Identities=22% Similarity=0.282 Sum_probs=98.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHH---HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 004806 48 SLIKEAIRDQVDGVAPSSEILVK---VAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLV 124 (729)
Q Consensus 48 ~~i~~~~~~~~~~~~~~~~~~~~---i~~~l~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (729)
..|++++.| ++.++.+.|.+ |..+.-|.++.++ .|+..+....|+.+..+..+|+|
T Consensus 789 ~FveaVA~D---~rsf~~~~F~rA~~I~~~k~L~s~~~I-E~l~~f~nr~E~~r~~ea~EeED----------------- 847 (929)
T COG5113 789 KFVEAVASD---KRSFDIDFFRRALRICENKYLISESQI-EELRSFINRLEKVRVIEAVEEED----------------- 847 (929)
T ss_pred HHHHHHHcc---cccccHHHHHHHHHHHhccccCCHHHH-HHHHHHHHHHHHHHHHHhhhhhh-----------------
Confidence 346666655 77899999985 4555556666666 44444444444433333223333
Q ss_pred HHhhhccCCCCCCCCcccccCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 004806 125 MIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 203 (729)
Q Consensus 125 ~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~ 203 (729)
..+||++|.+|++..+|+|||++| +|.+.||+.|..|+..+ .++|+.|.||+.++.+||-+||+.|-.|
T Consensus 848 ---------~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd-~tDPFNRmPLtlddVtpn~eLrekIn~f 917 (929)
T COG5113 848 ---------MGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLDDVTPNAELREKINRF 917 (929)
T ss_pred ---------ccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC-CCCccccCCCchhhcCCCHHHHHHHHHH
Confidence 345999999999999999999997 68999999999999987 6799999999999999999999999999
Q ss_pred HHHc
Q 004806 204 CELN 207 (729)
Q Consensus 204 ~~~~ 207 (729)
....
T Consensus 918 ~k~k 921 (929)
T COG5113 918 YKCK 921 (929)
T ss_pred Hhcc
Confidence 6544
|
|
| >KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=144.53 Aligned_cols=121 Identities=30% Similarity=0.423 Sum_probs=95.0
Q ss_pred CCCCCCHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 004806 59 DGVAPSSEILVKVAESL---SLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPV 135 (729)
Q Consensus 59 ~~~~~~~~~~~~i~~~l---~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (729)
|+|.|+.+.|......+ +++...++ ++...|....++....+..+++++.|
T Consensus 813 D~RSys~~lF~~a~~~~~k~~l~~~~~I-e~~s~la~~~~~~~~~~~~eee~l~d------------------------- 866 (943)
T KOG2042|consen 813 DGRSYSEELFNHAISILRKRILKSSRQI-EEFSELAERVEATASIDAEEEEELGD------------------------- 866 (943)
T ss_pred cccccCHHHHhhhHHHHHHhhcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-------------------------
Confidence 57889999998666655 33333343 55555555554443333333333433
Q ss_pred CCCCcccccCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHc
Q 004806 136 PIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 207 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~ 207 (729)
+|++|..||+..+|+|||++| +|++.||+.|++|+..+ .++|+||.||+.+++.||.+||..|+.|..++
T Consensus 867 -vpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~-~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 867 -VPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD-CTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred -CchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC-CCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 899999999999999999999 89999999999999986 67999999999999999999999999997765
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.8e-09 Score=119.25 Aligned_cols=272 Identities=15% Similarity=0.130 Sum_probs=212.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc-HHHHHhcC
Q 004806 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN-KSAIANAN 527 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~-k~~I~~~g 527 (729)
++..|...+.+.-..++..|..+.... ..... ..+..+.|...|.++++.++..++..|.++..+... ...+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 778888777666667777787776632 22222 457889999999999999999999999999876655 44456679
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHH
Q 004806 528 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIV 606 (729)
Q Consensus 528 ~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv 606 (729)
.++.++..|..++.++...|+.+|.+|+.....-..+...+.+..|..++...+..++..+..++.+++. .++....+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999988777778888889999999999888888899999999987 566677777
Q ss_pred HcCcHHHHHHhcCC-CHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC--CH---H-HHHHHHHHHHHHhhC
Q 004806 607 QAGAVKHLVDLMDP-AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SA---R-GKENAAAALLQLCTN 679 (729)
Q Consensus 607 ~~G~V~~Lv~LL~~-~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~--s~---~-~ke~A~~aL~nL~~~ 679 (729)
+.|+++.++..++. |.-++..++.+|..|+..+.+...+.+.|+++.|+.++... ++ . ..-..+....+++..
T Consensus 200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 89999999999854 44566789999999999999999999999999999999653 23 1 112223455666665
Q ss_pred CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcCc
Q 004806 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRHG 724 (729)
Q Consensus 680 ~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~~ 724 (729)
.+..... .-...+..|..++.++++..+..|.+.|..+....+|
T Consensus 280 ~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 280 SPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred ChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 4321111 1123566677778888899999999999888765444
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.8e-10 Score=101.12 Aligned_cols=116 Identities=31% Similarity=0.421 Sum_probs=106.2
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-c
Q 004806 482 IANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-D 559 (729)
Q Consensus 482 I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e 559 (729)
+.+.|+++.|+.+|.+.++.+++.|+.+|.+++.+ +.....+.+.|+++.|+.+|.++++.++..++++|.+|+... .
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999887 778888888999999999999999999999999999999865 4
Q ss_pred hhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 560 NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 560 ~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
....+...|+++.|+.++...+..+++.|+++|.||+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 56667778999999999999999999999999999863
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-11 Score=90.45 Aligned_cols=39 Identities=31% Similarity=0.777 Sum_probs=31.5
Q ss_pred ccCccccccCceecCCCccccHHHHHHHHhcCC---CCCCCC
Q 004806 143 CPLSLELMTDPVIVASGQTYERAFIKKWIDLGL---FVCPKT 181 (729)
Q Consensus 143 CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~---~~cP~t 181 (729)
||||+++|+|||+++|||+||+.||.+||+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998643 359986
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9e-09 Score=111.58 Aligned_cols=275 Identities=16% Similarity=0.203 Sum_probs=188.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
+..|..||+.|.-.+.+........|..|+.- .+|+..+.+.|.|..|+.++-..+++++...+..|.||+.+...+..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 56888999999988888888888999999885 47999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC-CHHHHH---------------
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKK--------------- 586 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~-~~~v~~--------------- 586 (729)
++..|.+|.|+.+|.+... ..-|+..|..||.+++.|..+.-..+|+.+.+.+-.+ +.++-.
T Consensus 382 Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 9999999999999976542 2335556666666666666555555555555443322 222222
Q ss_pred ----------------------------------------------------------------HHHHHHHhcccCcHHH
Q 004806 587 ----------------------------------------------------------------DAATALFNLSIYHENK 602 (729)
Q Consensus 587 ----------------------------------------------------------------~Al~aL~nLs~~~en~ 602 (729)
.++.+|.||...+-..
T Consensus 460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw 539 (791)
T KOG1222|consen 460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW 539 (791)
T ss_pred ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence 2333333333322222
Q ss_pred HHHH-HcCcHHHHHHhcC---CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHH
Q 004806 603 ARIV-QAGAVKHLVDLMD---PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQL 676 (729)
Q Consensus 603 ~~lv-~~G~V~~Lv~LL~---~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL 676 (729)
..++ ...+||.+-..|. ...+++-..+-.++.++....+...++.++.|+.|+++|+. .+++..-.-+.+..++
T Consensus 540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~ 619 (791)
T KOG1222|consen 540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQF 619 (791)
T ss_pred HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 2222 2344444444442 11223333334444444444555566678899999999976 4556666677777888
Q ss_pred hhCCHhhHHHHHhCC-CHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 677 CTNSSRFCSMVLQEG-AVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 677 ~~~~~~~~~~vl~~G-~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
..+. ..+..++++. .-..|+.|+...+..+|+.+-.+|-++..+
T Consensus 620 l~He-~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 620 LKHE-LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHH-HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 8773 3555555554 455688999999999998887777777654
|
|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-11 Score=117.60 Aligned_cols=61 Identities=30% Similarity=0.573 Sum_probs=53.5
Q ss_pred CCCCCCcccccCccccccCceecCCCccccHHHHHHHHhc---------------CCCCCCCCCccCCCCCCcccH
Q 004806 134 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL---------------GLFVCPKTRQTLAHTTLIPNY 194 (729)
Q Consensus 134 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~---------------~~~~cP~t~~~l~~~~l~pN~ 194 (729)
.++..++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+.+++...++|.+
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 3456788999999999999999999999999999999852 234699999999999999975
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.9e-09 Score=110.99 Aligned_cols=278 Identities=16% Similarity=0.164 Sum_probs=212.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC----CC---HHHHHHHHHHHHHhhc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS----SE---TKIQENAVTALLNLSI 515 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s----~d---~~v~e~Al~aL~nLs~ 515 (729)
.+.+..|.+...+.+.++..+..++|.++|+.+.++|..+.+.|+-..++..|+. ++ .+....+...|.|-..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 4567777777778889999999999999999999999999999997777777753 22 3555666777888765
Q ss_pred C-CccHHHHHhcCCHHHHHHHhcCC----------------------------------------------CHHHHHHHH
Q 004806 516 N-DNNKSAIANANAIEPLIHVLQTG----------------------------------------------SPEARENAA 548 (729)
Q Consensus 516 ~-~~~k~~I~~~g~I~~Lv~lL~s~----------------------------------------------~~e~r~~Aa 548 (729)
+ +..+..+++.|+++.|..++.-+ .++..+...
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 4 55677888888888766554211 112333444
Q ss_pred HHHHHhccCcchhhhhhccCcHHHHHHhhcCC-C-------HHHHHHHHHHHHhcccCcHHHHHHHHcC-cHHHHHHhcC
Q 004806 549 ATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-T-------PRGKKDAATALFNLSIYHENKARIVQAG-AVKHLVDLMD 619 (729)
Q Consensus 549 ~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~-~-------~~v~~~Al~aL~nLs~~~en~~~lv~~G-~V~~Lv~LL~ 619 (729)
.+|...+.++..+..+.+.|.+..++++++.- + ....+.++....-|...++.-+++...+ .++.++..++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 56666667777788888889999999988762 1 1223344444444555566666666666 7888888884
Q ss_pred -CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc-----CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCH
Q 004806 620 -PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-----GSARGKENAAAALLQLCTNSSRFCSMVLQEGAV 693 (729)
Q Consensus 620 -~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s-----~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v 693 (729)
.+..+...+.-+++|++..++....+++.+.+..|+++|.. ++-+.+..++.+|.|+.---+ ++..++..|++
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aGvt 404 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAGVT 404 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-chhhccccchH
Confidence 56677778888999999999999999999999999999843 577899999999999987654 77899999999
Q ss_pred HHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 694 PPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 694 ~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
+.++..++...|++.-+-...|++++..
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence 9999999999999888888888877653
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-09 Score=96.89 Aligned_cols=116 Identities=28% Similarity=0.363 Sum_probs=107.4
Q ss_pred HHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC-cchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 604 RIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.+++.|+++.|+++| +.+..++..++.+|++++.. ++.+..+.+.++++.++.+|...++.++..|+++|++|+...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999 56678999999999999996 7888888999999999999999999999999999999999988
Q ss_pred hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 682 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 682 ~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
.....+.+.|+++.|..++..++.++++.|.++|..|.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 78888899999999999999999999999999999874
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-08 Score=111.23 Aligned_cols=273 Identities=15% Similarity=0.105 Sum_probs=204.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccHHHHH
Q 004806 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAIA 524 (729)
Q Consensus 446 V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~~~~~k~~I~ 524 (729)
...++.+|..++..++..|+..|..+...+..+.......-.+..|...|.+. +...+..|+.+|..|...+..|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45566678888888999999999988765443211111111334555666553 47778888999999999999999999
Q ss_pred hcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCc--
Q 004806 525 NANAIEPLIHVLQTG--SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH-- 599 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s~--~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~-- 599 (729)
+.++++.|+.+|+.. ...++++++-++|-|+..++....+...+.|+.|+++++.. ..++.+.++.+|.||....
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 999999999999763 46899999999999999877766666679999999999875 6789999999999998732
Q ss_pred -----HHHHHHHHcCcHHHHHHhcC---CCHHHHHHHH-------HHHHHHhCCcch-----------------------
Q 004806 600 -----ENKARIVQAGAVKHLVDLMD---PAAGMVDKAV-------AVLANLATIPDG----------------------- 641 (729)
Q Consensus 600 -----en~~~lv~~G~V~~Lv~LL~---~~~~v~e~Al-------~~L~nLa~~~e~----------------------- 641 (729)
.....++..|+.+.+-.|.. .+.++.+..- ..+..+++.++.
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 24456788888776666652 4455443222 222333332222
Q ss_pred -HHHHHhCC--cHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHH
Q 004806 642 -RVAIGQEN--GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717 (729)
Q Consensus 642 -r~~i~~~g--~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~ 717 (729)
...+-+.+ .+..|+++|. +.++.....||.=|..++++.|..+..+-+.|+=..+..++...++++|..|..++..
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 22333333 3788999994 5678888889999999999999888888899999999999999999999999998876
Q ss_pred h
Q 004806 718 F 718 (729)
Q Consensus 718 L 718 (729)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-08 Score=113.52 Aligned_cols=256 Identities=18% Similarity=0.170 Sum_probs=203.4
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhc-CCc
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSI-NDN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~-~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~-~~~ 518 (729)
..-+++|++-|... ++..|.+|+.+|. .|...+++.-.-+.-.-+||.|+.+|+++ +.+++..|+++|.+|+. -+.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 45789999999866 8889999999998 55666655555555557899999999885 79999999999999975 477
Q ss_pred cHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 519 NKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
....+++.++||.|+.-|. -...++-+.++.+|..|+.. .-..|.+.|++...+.+|.--+..+++.|+.+..|+|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788889999999987655 45689999999999999863 34567788999999999998889999999999999987
Q ss_pred --CcHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC----CcchHHHHHhCCcHHHHHHHHccC----CHHHH
Q 004806 598 --YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELG----SARGK 666 (729)
Q Consensus 598 --~~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~----~~e~r~~i~~~g~I~~Lv~lL~s~----s~~~k 666 (729)
.++.-..+++ ++|.|..+|. .+...++.++-++..++. .++--+.++..+.|....++|.-. +....
T Consensus 324 si~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 3343343443 7999999994 566777887777777765 334457788889999999988543 33455
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC
Q 004806 667 ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS 702 (729)
Q Consensus 667 e~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s 702 (729)
...+..|..+|.+++.....+.+.++...|..+++.
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 667778888899988888888889999999998875
|
|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-10 Score=126.54 Aligned_cols=68 Identities=16% Similarity=0.388 Sum_probs=63.0
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCE 205 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~ 205 (729)
+...|.||||+++|.+||+++|||+||+.||..|+... ..||.|+.++....+.+|+.|.++|+.|..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 55789999999999999999999999999999999875 469999999988899999999999999965
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-08 Score=106.29 Aligned_cols=223 Identities=18% Similarity=0.101 Sum_probs=151.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDM-LHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~L-L~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
..+..+.+++++.++.++..|++.|..|..... . ..-+++.|..+ ++++++.|+..|+.+|+++.......
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 455666677777777778888877777654211 0 12356667666 56667788888888887774322110
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
...++..+...+.+.+..+|..++.+|..+ ....+++.|+.+|.+.+..++..|+.+|..+....+
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~-- 191 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVI----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP-- 191 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--
Confidence 112345566667777778888888777644 234578888888888888888888888888733211
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.+++.|+.+| +.+..++..|+..|+.+-. ..+++.|++.|..++ ++..|+.+|..+...
T Consensus 192 ------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-- 251 (280)
T PRK09687 192 ------DIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-- 251 (280)
T ss_pred ------HHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--
Confidence 3566777777 5667778888888876432 246888888888765 455677777765542
Q ss_pred hhHHHHHhCCCHHHHHHhhh-CCCHHHHHHHHHHHHH
Q 004806 682 RFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLSY 717 (729)
Q Consensus 682 ~~~~~vl~~G~v~~Lv~Ll~-sg~~rvr~~A~~lL~~ 717 (729)
.+++.|..++. ..+++++.+|.+.|+-
T Consensus 252 ---------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 ---------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ---------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 26899999997 7789999999998863
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-08 Score=106.00 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=171.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
-.+..|++.|.+.+..++..|+..|..+.. ..+++.+..++.++++.++..|+++|..|......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 457889999999999999999999987643 34678889999999999999999999998543221
Q ss_pred HhcCCHHHHHHH-hcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 524 ANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 524 ~~~g~I~~Lv~l-L~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
....++.|..+ +++.++.++..|+.+|.++....... ...++..+...+.+.+..++..|+.+|..+.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------ 156 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN------ 156 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC------
Confidence 12356777766 67788999999999999985422111 1235667778888889999999999998763
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
...+++.|+.+| +++..++..|+.+|+.+.... ..+++.|+..|...+..++..|+++|..+-. +
T Consensus 157 ----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~ 222 (280)
T PRK09687 157 ----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD--K 222 (280)
T ss_pred ----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC--h
Confidence 233788999999 577789999999999984321 2457889999999999999999999987432 2
Q ss_pred hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 682 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 682 ~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
.+++.|+..++.+. ++..|...|..|
T Consensus 223 ---------~av~~Li~~L~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 223 ---------RVLSVLIKELKKGT--VGDLIIEAAGEL 248 (280)
T ss_pred ---------hHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence 36888888888876 344555555544
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-07 Score=103.52 Aligned_cols=249 Identities=19% Similarity=0.231 Sum_probs=197.3
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCH
Q 004806 462 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSP 541 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~ 541 (729)
+.|+..|.++|.+ ......++....|..|+..|...+..+.-..+..|..|++-.+||..+.+.|.+..|+++....++
T Consensus 281 rva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~ 359 (791)
T KOG1222|consen 281 RVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP 359 (791)
T ss_pred HHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH
Confidence 4577788899884 455566777899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-C-
Q 004806 542 EARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D- 619 (729)
Q Consensus 542 e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~- 619 (729)
+++...+..|+|||.+...+..++..|.+|.|+.+|.+.... ..|+..|+.++.++..+.-+..-.+|+.+++.+ .
T Consensus 360 dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~ 437 (791)
T KOG1222|consen 360 DLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSG 437 (791)
T ss_pred HHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999886532 347789999999999999999999999999865 3
Q ss_pred CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHH
Q 004806 620 PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA 698 (729)
Q Consensus 620 ~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL-~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~ 698 (729)
.+..+....++.--|||.+..+.+.+++..++..|++.- ...++.. ..++.|+..+.+..+..+++ .|..|..
T Consensus 438 ~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~ 511 (791)
T KOG1222|consen 438 TGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAG 511 (791)
T ss_pred CCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHH
Confidence 333333334444468999888888888877888888764 4444433 45778888887655556655 3667777
Q ss_pred hhhCCCH-HHHHHHHHHHHHhh
Q 004806 699 LSQSGTP-RAKEKAQALLSYFR 719 (729)
Q Consensus 699 Ll~sg~~-rvr~~A~~lL~~L~ 719 (729)
++...++ .-.-.+.+.|.+|.
T Consensus 512 i~~nd~~E~F~~EClGtlanL~ 533 (791)
T KOG1222|consen 512 IAKNDNSESFGLECLGTLANLK 533 (791)
T ss_pred HhhcCchHHHHHHHHHHHhhcc
Confidence 7776653 33344555555554
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.1e-08 Score=104.37 Aligned_cols=230 Identities=17% Similarity=0.176 Sum_probs=162.5
Q ss_pred CcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCC-ccHHHHHh------cCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 004806 486 GAINILVDMLHS--SETKIQENAVTALLNLSIND-NNKSAIAN------ANAIEPLIHVLQTGSPEARENAAATLFSLSV 556 (729)
Q Consensus 486 GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs~~~-~~k~~I~~------~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~ 556 (729)
+.+..++.+|+. .+.++....+..+..|..++ .....+.. .....++++++..++.-++..|+..|..|..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 345666666654 58889999999999986654 34444433 1368889999999999999999999999987
Q ss_pred CcchhhhhhccCcHHHHHHhhcCC----CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc------CCC--HHH
Q 004806 557 IEDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM------DPA--AGM 624 (729)
Q Consensus 557 ~~e~k~~I~~~g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL------~~~--~~v 624 (729)
....+..-...+.++.++++|.+. +...+..|+.+|.+|...++.|..+++.|+++.|+.++ ... ..+
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 655554443366778888887753 44567899999999999999999999999999999999 222 234
Q ss_pred HHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHh-hHHHHHhCCCHHHHHHhhhC
Q 004806 625 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQS 702 (729)
Q Consensus 625 ~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL~~~~~~-~~~~vl~~G~v~~Lv~Ll~s 702 (729)
.=.++-++|.|+..++....+.+.+.|+.|+++++. ..+++.+-++++|.||+...++ ....++..|+++.|-.|...
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 567999999999999999999999999999999975 5789999999999999988765 56666676666555555544
Q ss_pred C--CHHHHHHHHHHH
Q 004806 703 G--TPRAKEKAQALL 715 (729)
Q Consensus 703 g--~~rvr~~A~~lL 715 (729)
. ++++.+--..+-
T Consensus 295 k~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 295 KWSDEDLTEDLEFLK 309 (312)
T ss_dssp --SSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 3 466666544443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.9e-08 Score=103.59 Aligned_cols=219 Identities=18% Similarity=0.165 Sum_probs=162.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc------CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 448 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC------GAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 448 ~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~------GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
.|++.+ +.+.++....+..|..+...++.....+... .....++.++..+|..++..|+.+|..|......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 344444 4678889999999999999887666666552 357888889999999999999999999976544333
Q ss_pred HHHhcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhh-----cC--CCHHHHHHHHH
Q 004806 522 AIANANAIEPLIHVLQT----GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL-----GN--GTPRGKKDAAT 590 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s----~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL-----~~--~~~~v~~~Al~ 590 (729)
.....+.++.++..|.+ .+.+.+..++.+|.+|...+.+|..+.+.++++.|+.+| .. .+.+++..++.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 33335667778877765 335567899999999999999999999999999999999 22 25788899999
Q ss_pred HHHhcccCcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcc--hHHHHHhCCcHHHHHHHHcc--CCHH
Q 004806 591 ALFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPD--GRVAIGQENGIPVLVEVVEL--GSAR 664 (729)
Q Consensus 591 aL~nLs~~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e--~r~~i~~~g~I~~Lv~lL~s--~s~~ 664 (729)
+++-|+.+++....+...+.|+.|++++ .....++.-++++|.||..... ....++..++++.+-.+... .+++
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 9999999999999999999999999999 3678899999999999999666 67777777776666665544 4555
Q ss_pred HHH
Q 004806 665 GKE 667 (729)
Q Consensus 665 ~ke 667 (729)
..+
T Consensus 301 l~e 303 (312)
T PF03224_consen 301 LTE 303 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-07 Score=101.37 Aligned_cols=275 Identities=15% Similarity=0.122 Sum_probs=204.6
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CC-------HHHHHHHHHHHHHh
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SE-------TKIQENAVTALLNL 513 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d-------~~v~e~Al~aL~nL 513 (729)
...+-.|++.|.+. +++........|...+. +...+-.+++.|.+.-++.+++. .+ ......++....-|
T Consensus 222 ~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vll 300 (604)
T KOG4500|consen 222 CSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLL 300 (604)
T ss_pred chHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhh
Confidence 34566677777643 33444444455555544 66788889999999999999865 22 11223334443344
Q ss_pred hcCCccHHHHHhcC-CHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcC-----CCHHHHHH
Q 004806 514 SINDNNKSAIANAN-AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-----GTPRGKKD 587 (729)
Q Consensus 514 s~~~~~k~~I~~~g-~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~-----~~~~v~~~ 587 (729)
...++.-..+...+ ++.-++..+.+.+......++-+|.|++..++++..+++.+.+..|+++|.. ++.+.+.+
T Consensus 301 ltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA 380 (604)
T KOG4500|consen 301 LTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHA 380 (604)
T ss_pred hcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHH
Confidence 45566655565555 8889999999999999999999999999999999999999999999999863 57889999
Q ss_pred HHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcc-hHHHHHhC-CcHHHHHHHHccCCH-
Q 004806 588 AATALFNLSIYHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPD-GRVAIGQE-NGIPVLVEVVELGSA- 663 (729)
Q Consensus 588 Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e-~r~~i~~~-g~I~~Lv~lL~s~s~- 663 (729)
++.||+||.....|+.++..+|+++.++..++ ..+.++.+-++.|..+-...+ ...++.+. ..+..|++.-++.+-
T Consensus 381 ~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 381 CLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred HHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccc
Confidence 99999999999999999999999999999985 567788888898888876554 33444433 357888888877654
Q ss_pred HHHHHHHHHHHHHhhCC--HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 664 RGKENAAAALLQLCTNS--SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 664 ~~ke~A~~aL~nL~~~~--~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
.+.-...+.|..+..++ .+....+.+.|+|..++.++...+-..+..|.-.|-.+
T Consensus 461 Gv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 461 GVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLST 517 (604)
T ss_pred hhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence 46677788888888874 34556677889999999988887766666655544433
|
|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.3e-09 Score=77.25 Aligned_cols=38 Identities=29% Similarity=0.748 Sum_probs=33.3
Q ss_pred ccCccccccCc-eecCCCccccHHHHHHHHhcCCCCCCCC
Q 004806 143 CPLSLELMTDP-VIVASGQTYERAFIKKWIDLGLFVCPKT 181 (729)
Q Consensus 143 CpI~~~lm~dP-V~~~~G~ty~r~~I~~~~~~~~~~cP~t 181 (729)
||||.+.+.|| |+++|||+||+.||++|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 5789987
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-06 Score=107.08 Aligned_cols=225 Identities=23% Similarity=0.217 Sum_probs=147.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...+..|++.|++.++.+++.|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+....
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----
Confidence 3467899999999999999999999987642 357899999999999999999999998774211
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC----
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY---- 598 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~---- 598 (729)
...+.|...|.+.++.+|..|+.+|..+.. +....|+.+|.+.++.++..|+.+|..+-..
T Consensus 684 ----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~ 748 (897)
T PRK13800 684 ----PPAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVA 748 (897)
T ss_pred ----CchHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHH
Confidence 122455666666667777776666665421 1123445555555555555555555543110
Q ss_pred -------cHHHHHHH---------HcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC
Q 004806 599 -------HENKARIV---------QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG 661 (729)
Q Consensus 599 -------~en~~~lv---------~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~ 661 (729)
.+.|...+ ....++.|..++ +++..++..|+..|..+.... ..+..|+..|...
T Consensus 749 ~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~ 819 (897)
T PRK13800 749 GAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRAS 819 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCC
Confidence 00111000 011245666666 455566666666666653321 1234567777777
Q ss_pred CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 662 SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 662 s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
++.++..|+.+|..+... ..++.|+.++.+.+..||+.|...|..+
T Consensus 820 d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 820 AWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 778888888888765421 2579999999999999999999999876
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-06 Score=105.90 Aligned_cols=228 Identities=21% Similarity=0.185 Sum_probs=154.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-----
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND----- 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~----- 517 (729)
...++.|++.|++.+..++..|+..|..+.... ...+.|...|.++++.++..|+.+|..+...+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 557889999999999999999999888774311 12245556666666666666666665442110
Q ss_pred ------c--cHHH----HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHH
Q 004806 518 ------N--NKSA----IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGK 585 (729)
Q Consensus 518 ------~--~k~~----I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~ 585 (729)
+ .|.. +...+..+.|+.+|.+.++++|..++.+|..+... ....++.|..++++.++.++
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR 792 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVR 792 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHH
Confidence 0 0000 00112234455556666666666666666655321 11346788888888888888
Q ss_pred HHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHH
Q 004806 586 KDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 664 (729)
Q Consensus 586 ~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~ 664 (729)
..|+.+|.++..... ++..|+..| +++..++..|+.+|..+.. ...++.|+.+|...+..
T Consensus 793 ~aA~~aLg~~g~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 793 AAALAALAELGCPPD---------DVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLD 853 (897)
T ss_pred HHHHHHHHhcCCcch---------hHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHH
Confidence 888888888743211 234577777 5677888889999987642 23579999999999999
Q ss_pred HHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHH
Q 004806 665 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717 (729)
Q Consensus 665 ~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~ 717 (729)
++..|+.+|..+ ..++ ...+.|...+.+.++.||+.|...|..
T Consensus 854 VR~~A~~aL~~~-~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 854 VRKAAVLALTRW-PGDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhcc-CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999999999886 2222 247788889999999999999998863
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-06 Score=96.93 Aligned_cols=267 Identities=18% Similarity=0.243 Sum_probs=201.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCc-
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDN- 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~~~- 518 (729)
...|+.|++.+.+. -.+.++.|++.|..+++ ..|..++ +-|++.|+..|..+ |+++...++.+++++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 57899999998844 56789999999999998 5666655 45678888888764 89999999999999966542
Q ss_pred ------cH----------HH-HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc--Ccchhhhhhc-cCcHHHHHHhhc
Q 004806 519 ------NK----------SA-IANANAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGR-SGAIGPLVDLLG 578 (729)
Q Consensus 519 ------~k----------~~-I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~--~~e~k~~I~~-~g~I~~Lv~LL~ 578 (729)
.+ .. |-..+.|..|+..+...+..+|.++...|.+|-. ..+.+..+.. .-+|..|+++|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 22 11 2234889999999999999999999999999866 3556666655 488999999999
Q ss_pred CCCHHHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhcCC----CH-HHHHHHHHHHHHHhC-CcchHHHHHhCCcH
Q 004806 579 NGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMDP----AA-GMVDKAVAVLANLAT-IPDGRVAIGQENGI 651 (729)
Q Consensus 579 ~~~~~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL~~----~~-~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I 651 (729)
+....++-.|+..|..|+....+.+++|. .+++..|+.+++. +. -+++.|+.+|-||-. +..++..+.+.+.|
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 99999999999999999998888888876 8899999999942 22 467999999999998 55566777777789
Q ss_pred HHHHHHHcc---CCHH----------HHHHHHHHHHHHhhCC--H----hhHHHHHhCCCHHHHHHhhhCCC-H-HHHHH
Q 004806 652 PVLVEVVEL---GSAR----------GKENAAAALLQLCTNS--S----RFCSMVLQEGAVPPLVALSQSGT-P-RAKEK 710 (729)
Q Consensus 652 ~~Lv~lL~s---~s~~----------~ke~A~~aL~nL~~~~--~----~~~~~vl~~G~v~~Lv~Ll~sg~-~-rvr~~ 710 (729)
|.|.++|.. ++.+ ....|..++..+..-+ . .++..+.+.+++..|+.++.+.. | .++..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 999988742 3321 1233444555554422 1 23356677899999999988764 3 44444
Q ss_pred HHH
Q 004806 711 AQA 713 (729)
Q Consensus 711 A~~ 713 (729)
+.-
T Consensus 337 sii 339 (970)
T KOG0946|consen 337 SII 339 (970)
T ss_pred HHH
Confidence 333
|
|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.2e-09 Score=82.88 Aligned_cols=44 Identities=30% Similarity=0.592 Sum_probs=31.3
Q ss_pred CcccccCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCCCC
Q 004806 139 SDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPKTR 182 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~t~ 182 (729)
-.|.|||++..|+|||+- .|||+|||.+|.+|+..+ ...||+.|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 358999999999999985 899999999999999543 34599965
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.9e-07 Score=83.67 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
-+.+..||..+. ..+.+.+.+.+.-|.++++ ++-|-..+.+.++++.++..|...|..+.+.++..|+|++.+..|+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 478899999887 5688999999999999999 57899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc-hhhhhhccCcHH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIG 571 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e-~k~~I~~~g~I~ 571 (729)
.|.++++++.++..|.++...+.-.|+.+|..|+.... .+..+....++.
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~ 144 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVR 144 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHH
Confidence 99999999999999999998899899999999987433 345554433333
|
|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-08 Score=104.25 Aligned_cols=64 Identities=19% Similarity=0.381 Sum_probs=59.6
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 203 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~ 203 (729)
+-++|-||.+.|+-||++|||||||--||.+|+... ..||.|..+++...|.-|+.|-.+|+.|
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-p~CP~C~~~~~Es~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-PQCPTCCVTVTESDLRNNRILDEIVKSL 85 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC-CCCCceecccchhhhhhhhHHHHHHHHH
Confidence 347899999999999999999999999999999986 4599999999999999999999999887
|
|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-08 Score=74.55 Aligned_cols=36 Identities=25% Similarity=0.728 Sum_probs=23.4
Q ss_pred ccCccccccC----ceecCCCccccHHHHHHHHhcC---CCCCC
Q 004806 143 CPLSLELMTD----PVIVASGQTYERAFIKKWIDLG---LFVCP 179 (729)
Q Consensus 143 CpI~~~lm~d----PV~~~~G~ty~r~~I~~~~~~~---~~~cP 179 (729)
||||.+ |.+ ||+++|||+||+.||++++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 23477
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.6e-06 Score=91.68 Aligned_cols=233 Identities=16% Similarity=0.217 Sum_probs=169.3
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCccHH
Q 004806 445 QVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 445 ~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
.+..|...|++. +...+.-|+.+|..|.+. +..|..+.+.++++.|+.+|+.. +.+++.+++-+|+-|+.+++...
T Consensus 144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~ 222 (429)
T cd00256 144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence 445666666643 456677788999998885 57898888899999999999763 56899999999999999877666
Q ss_pred HHHhcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhccCc-------chhhhhhccCcHHHHHHhhcCC---CHHHHHHHH-
Q 004806 522 AIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVIE-------DNKIKIGRSGAIGPLVDLLGNG---TPRGKKDAA- 589 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~-~e~r~~Aa~aL~nLS~~~-------e~k~~I~~~g~I~~Lv~LL~~~---~~~v~~~Al- 589 (729)
.....+.|+.|+.+++... ..+..-++++|.||.... .....++..|+++ ++..|... ++++..+--
T Consensus 223 ~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~ 301 (429)
T cd00256 223 VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKF 301 (429)
T ss_pred hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHH
Confidence 6667799999999998765 668888999999998732 1233455556555 55555432 444432211
Q ss_pred ------HHHHhcccC------------------------cHHHHHHHHcC--cHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 004806 590 ------TALFNLSIY------------------------HENKARIVQAG--AVKHLVDLMD--PAAGMVDKAVAVLANL 635 (729)
Q Consensus 590 ------~aL~nLs~~------------------------~en~~~lv~~G--~V~~Lv~LL~--~~~~v~e~Al~~L~nL 635 (729)
.-+..++++ .+|..++-+.+ ++..|+++|+ .++.+..-||.=++.+
T Consensus 302 L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~ 381 (429)
T cd00256 302 LTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEY 381 (429)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHH
Confidence 122233321 24555665533 6788888883 3455556677778888
Q ss_pred hC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 636 AT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 636 a~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
+. .+.||..+-+.|+=..+++++.+.++.++.+|..++..|..+
T Consensus 382 vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 382 VRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 87 788999988899999999999999999999999999877543
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.9e-08 Score=72.32 Aligned_cols=39 Identities=36% Similarity=0.941 Sum_probs=35.8
Q ss_pred ccCccccccCce-ecCCCccccHHHHHHHHh-cCCCCCCCC
Q 004806 143 CPLSLELMTDPV-IVASGQTYERAFIKKWID-LGLFVCPKT 181 (729)
Q Consensus 143 CpI~~~lm~dPV-~~~~G~ty~r~~I~~~~~-~~~~~cP~t 181 (729)
||||++.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999999 555669987
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A .... |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.6e-06 Score=88.28 Aligned_cols=271 Identities=15% Similarity=0.135 Sum_probs=198.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcC-cHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHH
Q 004806 447 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCG-AINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIA 524 (729)
Q Consensus 447 ~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~G-aI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~ 524 (729)
...+.+|...+..+...+.+.|..++.-.... ....+.+ ....|...+.+ .+.+....|+.+|-.+...++.|..+.
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v 195 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV 195 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee
Confidence 45566777777777776778887777643211 1111111 12223334444 567777888999988988899999999
Q ss_pred hcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCc--
Q 004806 525 NANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH-- 599 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s--~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~-- 599 (729)
..+++..++..|.+ .+..++++..-++|-|+.++.....+...+.|+.|.+++++. ...+.+.++.++.|+....
T Consensus 196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 99999999998843 358899999999999999888887776669999999999976 6789999999999998755
Q ss_pred -----HHHHHHHHcCcHHHHHHhcC---CCHHHHHH-------HHHHHHHHhCCcchHH---------------------
Q 004806 600 -----ENKARIVQAGAVKHLVDLMD---PAAGMVDK-------AVAVLANLATIPDGRV--------------------- 643 (729)
Q Consensus 600 -----en~~~lv~~G~V~~Lv~LL~---~~~~v~e~-------Al~~L~nLa~~~e~r~--------------------- 643 (729)
+....++..++.+.+-.|.. ++.++++. .-.....|++.++...
T Consensus 276 ~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~e 355 (442)
T KOG2759|consen 276 RETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRE 355 (442)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHH
Confidence 45566777777776655552 44444432 2223333444433322
Q ss_pred ---HHHhCC--cHHHHHHHHccC-CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHH
Q 004806 644 ---AIGQEN--GIPVLVEVVELG-SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717 (729)
Q Consensus 644 ---~i~~~g--~I~~Lv~lL~s~-s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~ 717 (729)
.+-+.+ .+..|+++|+.. ++...-.|+.=+....++.|+.+..+.+-|+=+.+.+|+...+++||-.|..++..
T Consensus 356 Na~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~ 435 (442)
T KOG2759|consen 356 NADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQK 435 (442)
T ss_pred hHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 222222 478899999875 58888889999999999999999999999999999999999999999999887765
Q ss_pred h
Q 004806 718 F 718 (729)
Q Consensus 718 L 718 (729)
|
T Consensus 436 l 436 (442)
T KOG2759|consen 436 L 436 (442)
T ss_pred H
Confidence 4
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.8e-06 Score=98.00 Aligned_cols=214 Identities=17% Similarity=0.156 Sum_probs=174.1
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCcc
Q 004806 442 IETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNN 519 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s-~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL-~s~d~~v~e~Al~aL~nLs~~~~~ 519 (729)
++.+|+.|+.+|+. .+.+++..|+++|..|+..-+.....+++.++||.|+.-| .-...++.|+++.+|..|+...
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-- 286 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-- 286 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence 47899999999994 4789999999999999998888889999999999998755 4467889999999999998543
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC--cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
-.+|..+|+|-..+..|.--+..++..|+++..|+|.. .+.-..+ ..++|.|..+|...+.+..+.++.++..+..
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 35788999999999999888889999999999999873 2222222 4789999999999999999988888888764
Q ss_pred ----CcHHHHHHHHcCcHHHHHHhcCC-----CHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHc
Q 004806 598 ----YHENKARIVQAGAVKHLVDLMDP-----AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE 659 (729)
Q Consensus 598 ----~~en~~~lv~~G~V~~Lv~LL~~-----~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~ 659 (729)
.++--+.+...|+|.....|+.. +..+-...+..|..+|+ ++.....+.+.++...|..+|.
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 34445778889999999999842 23445567778888887 5788888888888888888875
|
|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.3e-08 Score=101.70 Aligned_cols=71 Identities=25% Similarity=0.573 Sum_probs=61.7
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 210 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~ 210 (729)
..+++.||||++.|++|++++|||+||+.||..+|. ....||.|+. . ...+.+|..+.++++.+...+...
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~~~~ 80 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLRLSR 80 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcCCcc
Confidence 457899999999999999999999999999999999 5567999996 2 228889999999999998876543
|
|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-07 Score=95.75 Aligned_cols=49 Identities=18% Similarity=0.378 Sum_probs=41.7
Q ss_pred CCCcccccCccccccCc--------eecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 137 IPSDFCCPLSLELMTDP--------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dP--------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
..++..||||++.+.+| |+.+|||+||+.||.+|+... .+||+||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~-~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK-NTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC-CCCCCCCCEee
Confidence 45678999999987764 567899999999999999864 68999999875
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.1e-06 Score=87.80 Aligned_cols=181 Identities=22% Similarity=0.191 Sum_probs=154.3
Q ss_pred CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHh
Q 004806 539 GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDL 617 (729)
Q Consensus 539 ~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~L 617 (729)
.+.+-++-|..-|..++.+-++...+...|++..|+.++++.+..++..|+++|...+. ++.....+.+.|+.+.|+.+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 35777888888888888888888899999999999999999999999999999999887 66778889999999999999
Q ss_pred cC--CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCC
Q 004806 618 MD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGA 692 (729)
Q Consensus 618 L~--~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~ 692 (729)
|. .+..++.+|+.++..|-. ++.+...+...+|...|...+.+ .+...+..|+..+..|..........+-..|.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 94 456677899999999988 77889999999999999999988 67889999999999999887766676667788
Q ss_pred HHHHHHhhhCCCHHHHHHHHH-HHHHhh
Q 004806 693 VPPLVALSQSGTPRAKEKAQA-LLSYFR 719 (729)
Q Consensus 693 v~~Lv~Ll~sg~~rvr~~A~~-lL~~L~ 719 (729)
...+..+..+....+.+.|.. +|..+.
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 888888888888888877766 444443
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-05 Score=85.28 Aligned_cols=182 Identities=19% Similarity=0.214 Sum_probs=143.6
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHH
Q 004806 455 STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLI 533 (729)
Q Consensus 455 s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv 533 (729)
+.+.+.+..|+..|..++. +.+|-.-+...|+...|+..|++.+..+++.|+++|...+.+ +..+..+++.|++..|+
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 4467778889999999987 568999999999999999999999999999999999999765 78899999999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcC--CCHHHHHHHHHHHHhcccC-cHHHHHHHHc
Q 004806 534 HVLQTGS-PEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGN--GTPRGKKDAATALFNLSIY-HENKARIVQA 608 (729)
Q Consensus 534 ~lL~s~~-~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~--~~~~v~~~Al~aL~nLs~~-~en~~~lv~~ 608 (729)
..|.+.+ ..++..|+.++++|-.+ ......+...++...|.++|++ .+.+.++.++..+..|... ......+-..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 9998655 66889999999999885 4455666667889999999998 4788899999999998773 3344444456
Q ss_pred CcHHHHHHhcC-CCHHHHHHHHHHHHHHhC
Q 004806 609 GAVKHLVDLMD-PAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 609 G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~ 637 (729)
|....++.+.. -+..+.+.++.++..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 66666666653 344555566555444433
|
|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.7e-08 Score=79.10 Aligned_cols=58 Identities=16% Similarity=0.348 Sum_probs=33.9
Q ss_pred cccccCccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALI 200 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I 200 (729)
-++|++|.++|++||. ..|.|+||+.||.+.+.. .||+|+.|-...++.-|+.|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 3789999999999996 579999999999886654 399999999999999999998886
|
|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7e-08 Score=96.64 Aligned_cols=56 Identities=25% Similarity=0.581 Sum_probs=50.6
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHhcCC--CCCCCCCccCCCCCCcccH
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGL--FVCPKTRQTLAHTTLIPNY 194 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~--~~cP~t~~~l~~~~l~pN~ 194 (729)
..|-|-||+++-+|||++.|||-||=.||.+|+.... ..||+|+..++.+.++|=+
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 3799999999999999999999999999999998533 3499999999999999965
|
|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-07 Score=74.20 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=40.6
Q ss_pred CcccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
+++.|+||++-+.+++++||||. ||..|+.+|+.. ...||+||++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46789999999999999999999 999999999995 467999999875
|
... |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-05 Score=92.63 Aligned_cols=253 Identities=19% Similarity=0.199 Sum_probs=176.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~ 521 (729)
--.+..+.+.|.++++.++..|++.|.+++. ++-.. ..++.+..+|.++++.|+..|+.++..+... ++
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--- 147 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--- 147 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---
Confidence 3477888899999999999999999999874 22222 2578889999999999999999999998643 22
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHh-ccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSL-SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nL-S~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e 600 (729)
.+... .++.+..+|.+.++.++..|+.++..+ ...+... . .-...+..|..++...++-++...+.+|..++....
T Consensus 148 ~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~ 224 (526)
T PF01602_consen 148 LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP 224 (526)
T ss_dssp CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH
T ss_pred HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh
Confidence 12222 588999999999999999999999999 2111111 1 113455666666678889999999999999887443
Q ss_pred HHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 601 NKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
....- ...++.+..++. .+..++-.++.++..+..... .-..+++.|+.++.+.++.++..|+..|..++..
T Consensus 225 ~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 225 EDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred hhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence 32211 456666777763 456677778888887776554 2334678888888888888888888888888877
Q ss_pred CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 680 ~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
.+ ..+. .....+..+..+.+..+|..|..+|..+..
T Consensus 298 ~~---~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 298 NP---PAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp CH---HHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred cc---hhhh--hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 62 2222 222223333336667788888887776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.2e-05 Score=79.36 Aligned_cols=270 Identities=17% Similarity=0.180 Sum_probs=186.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~-~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
..-.|++++.+.++.++..|...+..|+.. ..+..... .-.++.|..++...++ .+.|+.+|.|++.++..+..+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 456789999999999999999999988875 34444333 3568889999987666 688999999999998888777
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhc-------cCcHHHHHHhhcCC-CHHH-HHHHHHHHHh
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-------SGAIGPLVDLLGNG-TPRG-KKDAATALFN 594 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~-------~g~I~~Lv~LL~~~-~~~v-~~~Al~aL~n 594 (729)
... .+..++..+.......-...+.+|.||+..+.....+.. .|.+......+..+ +... ...-+-.+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 777 788888888777666777788999999997765444321 35555555555544 3222 3345568889
Q ss_pred cccCcHHHHHHHHcCcHHH--HHHhcCCCHHHH-HHHHHHHHHHhCCcchHHHHHhCC--cHHHHH--------------
Q 004806 595 LSIYHENKARIVQAGAVKH--LVDLMDPAAGMV-DKAVAVLANLATIPDGRVAIGQEN--GIPVLV-------------- 655 (729)
Q Consensus 595 Ls~~~en~~~lv~~G~V~~--Lv~LL~~~~~v~-e~Al~~L~nLa~~~e~r~~i~~~g--~I~~Lv-------------- 655 (729)
|+....+|..+.....++. |+.+-..+..++ ...+++|.|.|........++..+ .++.|+
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 9999999988887663322 222223334444 457889999998777666665532 233332
Q ss_pred -------HHHc-----cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHhhc
Q 004806 656 -------EVVE-----LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 720 (729)
Q Consensus 656 -------~lL~-----s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L~~ 720 (729)
++|- ..++.++..-+.+|..||.... .|+.+...|+.+.|-.+-... ++.+++++-.+..++-+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 2221 2466788888999999998765 566666666655555554443 47888888777777765
|
|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-07 Score=90.36 Aligned_cols=52 Identities=23% Similarity=0.540 Sum_probs=45.1
Q ss_pred cccccCccccccC--ceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 140 DFCCPLSLELMTD--PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 140 ~f~CpI~~~lm~d--PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
-|.||||++-+.. ||.+.|||.||+.||+..++.+ .+||.|++.++++++.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhee
Confidence 3899999988865 5567899999999999999986 56999999999888765
|
|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-07 Score=93.74 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=58.7
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCE 205 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~ 205 (729)
-++|-||.+.++-||+++||||||.-||.+|+... ..||+|+.+....-|.-+..++..++.|..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q-p~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ-PFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCC-CCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 46899999999999999999999999999999986 559999999988888888888888888743
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-05 Score=89.41 Aligned_cols=219 Identities=18% Similarity=0.208 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
+..++.+.+.+.++++.+|..|+.++..+.+.+++. +... .++.|..+|.+.++.++..|+.+|..+..++....
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~- 187 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK- 187 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-
Confidence 567788888999999999999999999998865542 3333 69999999999999999999999998811111100
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
-.-...+..|..++...++-.+...+.+|..++........- ...++.+..++.+.++.+...|+.++..+.....
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 111223444455556667777777777777765532221100 3456666666666666677777777776655444
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhh
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCT 678 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~ 678 (729)
.-..+++.|+.++ +.+..++-.++..|..++... ...+. .....+..+. +.+..++..++.+|..++.
T Consensus 264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 3334556666666 344556666666666666543 12221 1222233333 5566666666666666664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-05 Score=90.77 Aligned_cols=275 Identities=16% Similarity=0.127 Sum_probs=189.9
Q ss_pred chhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHH-h---cCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 004806 438 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIA-N---CGAINILVDMLHSSETKIQENAVTALLNL 513 (729)
Q Consensus 438 ~l~~~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~-~---~GaI~~Lv~LL~s~d~~v~e~Al~aL~nL 513 (729)
.+......++.|..+|.+.+...+..|..+|..++.++.+.-..=. . .-.+|.++.+.++..+.++..|+.++...
T Consensus 122 ~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 122 GLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred ccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 3445678999999999999888899999999999987643322200 1 13689999999999999999999999766
Q ss_pred hcCCccHHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 004806 514 SINDNNKSAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 592 (729)
Q Consensus 514 s~~~~~k~~I~-~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL 592 (729)
..... +..+. -..++..|..+-...++++|.+.+.+|..|......|..---.+++.-++...++.+..+...|+...
T Consensus 202 i~~~~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 202 IIIQT-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred eecCc-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 44332 22332 23678888888888899999999999998876544333222247788888888888999999999999
Q ss_pred HhcccCcHHHHHHHH--cCcHHHHHHhcC---CCH---------------------------------------------
Q 004806 593 FNLSIYHENKARIVQ--AGAVKHLVDLMD---PAA--------------------------------------------- 622 (729)
Q Consensus 593 ~nLs~~~en~~~lv~--~G~V~~Lv~LL~---~~~--------------------------------------------- 622 (729)
..++..+-.+..+.. ...||.|+.-+. .+.
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 999988754444433 567788777441 110
Q ss_pred ---------HHHH---HHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhC
Q 004806 623 ---------GMVD---KAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE 690 (729)
Q Consensus 623 ---------~v~e---~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~ 690 (729)
.++. .++.+|+|+-. ..+. .-.+|.|-+.|.+..-.++|.++.+|..++.+.-. -+...
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLanvf~-----~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~ 431 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLANVFG-----DELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPH 431 (885)
T ss_pred ccccccccccHhhccHHHHHHHHHhhH-----HHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccc
Confidence 1111 12222222211 1111 11245555555667788999999999999876532 11111
Q ss_pred --CCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 691 --GAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 691 --G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
..+|.|+.++.+..+-||....|.|..+..|-
T Consensus 432 LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 432 LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred hHHHHHHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 26888999999999999999999998887663
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.4e-05 Score=84.91 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=129.8
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI- 597 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~- 597 (729)
+..+.+.-....+..+....+...+..|+-++.+++. ...-+..+-...++.+||++|..+...++..++.+|+||..
T Consensus 370 ~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVme 449 (678)
T KOG1293|consen 370 KKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVME 449 (678)
T ss_pred HHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhh
Confidence 4444443333344444444566677666766766665 33344445556899999999999999999999999999976
Q ss_pred CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch--HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 004806 598 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG--RVAIGQENGIPVLVEVVELGSARGKENAAAALL 674 (729)
Q Consensus 598 ~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~--r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~ 674 (729)
+..-+.++++.|+|..|..++ +.+..++..++++|.++....+. +.+....-....++.+...++..++|.+...|.
T Consensus 450 fs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 450 FSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLR 529 (678)
T ss_pred cccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 788899999999999999998 57788899999999999985544 333344445678888899999999999999999
Q ss_pred HHhhCCHhhHHHHHh
Q 004806 675 QLCTNSSRFCSMVLQ 689 (729)
Q Consensus 675 nL~~~~~~~~~~vl~ 689 (729)
||..+..+..+.+++
T Consensus 530 Nl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 530 NLTCNSRKSVDFLLE 544 (678)
T ss_pred HhhcCcHHHHHHHHH
Confidence 999997766665554
|
|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-06 Score=66.02 Aligned_cols=44 Identities=34% Similarity=0.804 Sum_probs=39.0
Q ss_pred cccCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 142 CCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 142 ~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
.||||.+.+.+|+.+. |||.|++.|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999999999876 9999999999999998667799998753
|
|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=5e-07 Score=68.48 Aligned_cols=40 Identities=33% Similarity=0.728 Sum_probs=33.9
Q ss_pred cccCcccccc---CceecCCCccccHHHHHHHHhcCCCCCCCCC
Q 004806 142 CCPLSLELMT---DPVIVASGQTYERAFIKKWIDLGLFVCPKTR 182 (729)
Q Consensus 142 ~CpI~~~lm~---dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~ 182 (729)
.||||++-|. .++.++|||.|++.||.+|++.. .+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4999999984 56678999999999999999985 5899996
|
... |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.5e-05 Score=84.89 Aligned_cols=249 Identities=17% Similarity=0.081 Sum_probs=166.2
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHH
Q 004806 455 STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLI 533 (729)
Q Consensus 455 s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv 533 (729)
..+.+....|+.++..+++.-..-|.-+...+++.+|+.+|..++..++..++.+|+||... .+.|..+...|+|+.|.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 34566677788888888775444555566678999999999988999999999999999875 77899999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhccCcchh--hhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-cHHHHHHHHc-C
Q 004806 534 HVLQTGSPEARENAAATLFSLSVIEDNK--IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQA-G 609 (729)
Q Consensus 534 ~lL~s~~~e~r~~Aa~aL~nLS~~~e~k--~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~en~~~lv~~-G 609 (729)
..+.+.+..++..+.++|.++..+.+.. ......-....++.+..++++.+++.+...|+||.-+ .+....+++. +
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~ 547 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK 547 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence 9999999999999999999999865543 3333334456678888999999999999999999764 3444444442 1
Q ss_pred -cHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHH---H-----HccCCHHHHHHHHHHHHHHhh
Q 004806 610 -AVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE---V-----VELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 610 -~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~---l-----L~s~s~~~ke~A~~aL~nL~~ 678 (729)
.+......+ .....+.......+.++..--++...-.-.+..+.++- . ..+.......+++|.+.|+..
T Consensus 548 ~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~ 627 (678)
T KOG1293|consen 548 DVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTT 627 (678)
T ss_pred HHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccC
Confidence 222222222 23333444444444444443333222222233333222 1 233456677889999999887
Q ss_pred CCH--h-hHHHHHhCCCHHHHHHhhhCC
Q 004806 679 NSS--R-FCSMVLQEGAVPPLVALSQSG 703 (729)
Q Consensus 679 ~~~--~-~~~~vl~~G~v~~Lv~Ll~sg 703 (729)
... . .+......++......+..++
T Consensus 628 ~~s~s~~dr~~~~~n~i~e~~~k~~~sd 655 (678)
T KOG1293|consen 628 TDSSSNFDRSNLKLNCIWELNNKLWNSD 655 (678)
T ss_pred CCCCcccchhhccccceechhhhcccch
Confidence 542 2 333333445555555544444
|
|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-06 Score=89.69 Aligned_cols=55 Identities=25% Similarity=0.509 Sum_probs=48.2
Q ss_pred CCCC-cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 004806 136 PIPS-DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 191 (729)
Q Consensus 136 ~~p~-~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 191 (729)
.+|+ .+.|-||++-+.||--+||||.||=+||..|..+.. -||.||+++++..++
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSKVI 289 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-CCCcccccCCCccee
Confidence 3444 599999999999999999999999999999999864 499999999887654
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=74.07 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=130.1
Q ss_pred hhccCcHHHHHHhhcC-CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch
Q 004806 564 IGRSGAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 641 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~ 641 (729)
+.+.+.+..||+-... .+.+.++....-|.|.+.++-|-..+.+..++...++-| .++..+++.+++.|.|+|-.+.+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 3344677788876665 478899999999999999999999999999999999988 57788999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 642 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 642 r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
...|.++++++.++..+.+........|+.+|..||......++.++...++..+.+.-.+...+-+.-|...|.-.
T Consensus 92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888888887776777766665455555555565555443
|
|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-06 Score=61.89 Aligned_cols=39 Identities=41% Similarity=0.943 Sum_probs=35.9
Q ss_pred ccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCC
Q 004806 143 CPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKT 181 (729)
Q Consensus 143 CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t 181 (729)
||||++..++|++++|||.|+..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998655679986
|
E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s) |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00014 Score=79.44 Aligned_cols=261 Identities=16% Similarity=0.169 Sum_probs=182.9
Q ss_pred HHHHHHHHHHhcCCCHHH--HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcC-Cc
Q 004806 443 ETQVRKLVEDLKSTSLDT--QREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIN-DN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~ev--q~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~-~~ 518 (729)
.+.+..|++++.+++.+. +.+|.+.|-.+.. .+|+..++..| ...++.+-+ .+.++.+...+.+|.++-.+ ++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 567889999999888766 6788888877655 37899888876 444444443 35678889999999999776 45
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC--cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs 596 (729)
....+++.|+++.++-..+..++.+..+++-+|.|.+.+ ...+..|++..+-+-|..|-.+.+.-.+..|+.+++-|+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 677788999999999989888999999999999999874 567888888888888888877778888999999999999
Q ss_pred cCcHHHHHHHHcCc---HHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHhC---CcHHHHHHHHccCCHHHHHHHH
Q 004806 597 IYHENKARIVQAGA---VKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQE---NGIPVLVEVVELGSARGKENAA 670 (729)
Q Consensus 597 ~~~en~~~lv~~G~---V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~---g~I~~Lv~lL~s~s~~~ke~A~ 670 (729)
.+.+.-..+.+.|. |..|+..+++..-.++ . ....+. .-++.|+-+|.+.-.+.+-.++
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD--------------~-hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~A 400 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASLDPGRFARD--------------A-HDYAQGRGPDDLQRLVPLLDSNRLEAQCIGA 400 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhccCcchhhhh--------------h-hhhhccCChHHHHHhhhhhhcchhhhhhhHH
Confidence 88887666666664 4444444443221111 0 001111 1367788888754444433333
Q ss_pred HHHHHHhhC-CHhhHHHH-HhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 671 AALLQLCTN-SSRFCSMV-LQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 671 ~aL~nL~~~-~~~~~~~v-l~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.-|..=+.- +......| -+-|+|+.|.++..+.+.-..+-|.++|..+...
T Consensus 401 F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 401 FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 322221111 11233334 4569999999999987777777788888888653
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00015 Score=78.79 Aligned_cols=231 Identities=16% Similarity=0.202 Sum_probs=166.0
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 447 RKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 447 ~~Lv~~L~s-~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
..|-..+++ .+.+...-|+++|..+.+.. +.|..+..++++..|+..|.+ .+.++|.+.+-+++-|..++.....+
T Consensus 159 ~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~ 237 (442)
T KOG2759|consen 159 GFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKL 237 (442)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHH
Confidence 344444554 55666677899999999964 799999999999999999943 37889999999999999998887777
Q ss_pred HhcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhccCcc---hh----hhhhccCcHHHHHHhhcCC---CHHHHHHHHH--
Q 004806 524 ANANAIEPLIHVLQTGS-PEARENAAATLFSLSVIED---NK----IKIGRSGAIGPLVDLLGNG---TPRGKKDAAT-- 590 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~-~e~r~~Aa~aL~nLS~~~e---~k----~~I~~~g~I~~Lv~LL~~~---~~~v~~~Al~-- 590 (729)
...+.|+.|..+++... ..+..-.++++.|+..... .+ ..++. +.++.-++.|... ++++..+--.
T Consensus 238 ~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~ 316 (442)
T KOG2759|consen 238 KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLT 316 (442)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 77799999999998765 5577778888999876432 22 33343 4445555555432 3333222111
Q ss_pred -----HHHhcccC------------------------cHHHHHHHH--cCcHHHHHHhcC--CCHHHHHHHHHHHHHHhC
Q 004806 591 -----ALFNLSIY------------------------HENKARIVQ--AGAVKHLVDLMD--PAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 591 -----aL~nLs~~------------------------~en~~~lv~--~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~ 637 (729)
-...||++ .+|..++-+ ..++..|+.+|+ .++.+..-|+.=++....
T Consensus 317 e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr 396 (442)
T KOG2759|consen 317 EKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVR 396 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHH
Confidence 22223322 234445544 347888999994 345555566666666666
Q ss_pred -CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 638 -IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 638 -~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
.++|+..+.+.||=..++++|.+.++.++.+|+.++..|..+
T Consensus 397 ~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 397 HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999877654
|
|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.3e-06 Score=88.37 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=50.7
Q ss_pred CcccccCccc-cccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC----CcccHHHHHHHHHHH
Q 004806 139 SDFCCPLSLE-LMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT----LIPNYTVKALIANWC 204 (729)
Q Consensus 139 ~~f~CpI~~~-lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~----l~pN~~l~~~I~~~~ 204 (729)
++..||+|.. ....|= +.+|||+||++||.++|..+...||.|+.++.... ..++..+.+.|.--+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iRk 76 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIRK 76 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHHH
Confidence 5678999996 344553 23799999999999999887778999999998876 556666666655443
|
All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.4e-06 Score=84.06 Aligned_cols=55 Identities=13% Similarity=0.287 Sum_probs=43.3
Q ss_pred CCCcccccCccccccC---------ceecCCCccccHHHHHHHHhcC-----CCCCCCCCccCCCCCCccc
Q 004806 137 IPSDFCCPLSLELMTD---------PVIVASGQTYERAFIKKWIDLG-----LFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~d---------PV~~~~G~ty~r~~I~~~~~~~-----~~~cP~t~~~l~~~~l~pN 193 (729)
..++..|+||++...+ +++.+|||+||..||.+|.... ..+||.||+.+. ..+|+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 5677899999998644 4677999999999999999753 235999999875 34444
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0016 Score=78.65 Aligned_cols=274 Identities=17% Similarity=0.210 Sum_probs=161.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHH----cCCCHHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDML----HSSETKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL----~s~d~~v~e~Al~aL~nLs~~~ 517 (729)
....+.+.+.+...+..++..|++++..++...+.+....... ..+|.++..| ..+|.+....++.+|..|....
T Consensus 158 ~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 158 DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 4556667777776666699999999998888765344433332 4556555544 4456665666677776665432
Q ss_pred cc--HHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhccCcc----------------------------------
Q 004806 518 NN--KSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVIED---------------------------------- 559 (729)
Q Consensus 518 ~~--k~~I~~~g~I~~Lv~lL~s~--~~e~r~~Aa~aL~nLS~~~e---------------------------------- 559 (729)
.. +..+. ..|...+.+.++. +..+|..|+..|..++.+..
T Consensus 238 pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 238 PKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred hHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 11 11110 1122222222222 13334444433333322200
Q ss_pred ---------hh----hh-------hhcc----CcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-cHHHHHHHHcCcHHHH
Q 004806 560 ---------NK----IK-------IGRS----GAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHL 614 (729)
Q Consensus 560 ---------~k----~~-------I~~~----g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~en~~~lv~~G~V~~L 614 (729)
+. .. ++-. -.++.+-.+|.+.+..-+++|+.+|..++.. ++.-.. .=..+++..
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~V 394 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG-NLPKILPIV 394 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHH
Confidence 00 00 0000 1233444556677777788888888777552 221111 113356666
Q ss_pred HHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHhh-HHHHHhC
Q 004806 615 VDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSRF-CSMVLQE 690 (729)
Q Consensus 615 v~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL~~~~~~~-~~~vl~~ 690 (729)
+..| ++.+.++-.|+.+++.+++ ....-+.-...-.++.|+..+.+ .+++++.+|+.+|.|+....++. ..-.+ .
T Consensus 395 l~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d 473 (1075)
T KOG2171|consen 395 LNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-D 473 (1075)
T ss_pred HhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-H
Confidence 6666 6888999999999999998 34444444556678889999876 68899999999999998876531 11111 2
Q ss_pred CCHH-HHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 691 GAVP-PLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 691 G~v~-~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+.+. .|..+++++.+.+++.|...|.-...
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 4555 66677888999999999888765543
|
|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.8e-06 Score=83.55 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=59.1
Q ss_pred ccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCcc-CCCCCCcccHHHHHHHHHHHHHc
Q 004806 141 FCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQT-LAHTTLIPNYTVKALIANWCELN 207 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~-l~~~~l~pN~~l~~~I~~~~~~~ 207 (729)
+.||+|+.|.++||-+ +|||+||..||+..+......||.|... +-.+.|.|++..+..|+.+.+++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 9999999999999988 6899999999999988777889999653 55578999999999999998743
|
|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.9e-06 Score=90.86 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=56.9
Q ss_pred CCCcccccCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCccCC-CCCCcccHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLA-HTTLIPNYTVKALIANW 203 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~-~~~l~pN~~l~~~I~~~ 203 (729)
+=.+|.||||++|.+--.+++ |+|-||+.||-+-+..++..||.||+.+. ...|.++...-.+|.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 345789999999999999885 99999999999999999999999999975 45788776666666654
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0039 Score=74.75 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
+..+..+.+.+.+.++.++..|+.++..+...++ ..+.+.|.++.|..+|.+.|+.|+.+|+.+|..+....... .
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l 214 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-I 214 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-h
Confidence 4566777788889999999999999999977554 33456789999999999999999999999999996543221 2
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
-...+.+..|+..|..-++=.+...+.+|... .+...... ...+..+...|++.++.+.-.|+.++.++...
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 22345566677777666666666666666442 12111111 25667777778888888888888888887653
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00034 Score=84.17 Aligned_cols=234 Identities=18% Similarity=0.167 Sum_probs=152.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 521 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~ 521 (729)
-.++.+-.+|.+.++..+..|+.+|..++.+..+. .+... ..++..++.|.++++.|+..|+.+|..++.+ ...-.
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~--m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDV--MIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHH--HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence 45667777888999999999999999998865433 22222 6778888899999999999999999999876 22233
Q ss_pred HHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcch-hhhhhccCcHHH-HHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 522 AIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDN-KIKIGRSGAIGP-LVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~-Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
.-...-.++.|+..+.+. ++.++.+|+.+|.|++..-.. ...-.-.+.+.. |..|+.++.+.+++.++.+|...+..
T Consensus 426 k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 426 KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 333445677888888764 589999999999999763222 111112366663 33455678899999999999998764
Q ss_pred cHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhC--CcchHHHHHhC--CcHHHHHHH---HccCCHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLAT--IPDGRVAIGQE--NGIPVLVEV---VELGSARGKENA 669 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~--~~e~r~~i~~~--g~I~~Lv~l---L~s~s~~~ke~A 669 (729)
.+..-.-.-...+|.|..+|. .+.+.+.....++.+++. ..-|++.+... ..+..+..+ ....+...++..
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHH
Confidence 443332233557777777773 223333333333333322 23445555432 234555554 233455666777
Q ss_pred HHHHHHHhhC
Q 004806 670 AAALLQLCTN 679 (729)
Q Consensus 670 ~~aL~nL~~~ 679 (729)
.....++|+.
T Consensus 586 ~~~warmc~i 595 (1075)
T KOG2171|consen 586 IAFWARMCRI 595 (1075)
T ss_pred HHHHHHHHHH
Confidence 7777777764
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.001 Score=74.55 Aligned_cols=220 Identities=16% Similarity=0.052 Sum_probs=120.2
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
...++.|+..|. ..+.++...++..+. ....+ .++..|+..|.+.++.++..++.+|..+-
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~------- 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG------- 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------
Confidence 345677777774 445555544333332 22111 13667777777777777777777765441
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 601 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en 601 (729)
.....+.|+.+|.+.++.++..++.++... .....+.|..+|++.++.++..|+.+|..|-.
T Consensus 115 ---~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---- 176 (410)
T TIGR02270 115 ---GRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR---- 176 (410)
T ss_pred ---chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence 224456666666666666666555554431 12344566666666666666666666666522
Q ss_pred HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHh----C------------------CcHHHHHHHH
Q 004806 602 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQ----E------------------NGIPVLVEVV 658 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~----~------------------g~I~~Lv~lL 658 (729)
..+++.|...+ +.+..++..|+..|..+.. ++....+.. . ..++.|..++
T Consensus 177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll 249 (410)
T TIGR02270 177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELL 249 (410)
T ss_pred ------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHh
Confidence 22334444444 3455555555555544422 111111110 1 2344555555
Q ss_pred ccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 659 ELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 659 ~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+.. .+++.++.+|..+-.- ..++.|+..+.... +++.|.+.++.+..
T Consensus 250 ~d~--~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 250 QAA--ATRREALRAVGLVGDV-----------EAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred cCh--hhHHHHHHHHHHcCCc-----------chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 443 3666666666644322 36888888776543 88889988888765
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0015 Score=78.20 Aligned_cols=257 Identities=16% Similarity=0.111 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
......+++.+.+.+.++++-.--.|..++..+++.- . -+|..|.+=|.+.++.++-.|+++|.++-...
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela-l----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~----- 136 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA-L----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS----- 136 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH-H----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----
Confidence 4567777888888888888777777777777554321 1 24667777788889999999999998774311
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
+ -.-.+.++.+.|.+.++-+|..|+-++..|-... ...+.+.+.++.|.++|.+.++.+..+|+.+|..+.......
T Consensus 137 i-~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~--pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 137 V-LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD--MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 1 1124666778888999999999999999985422 233445688999999999999999999999999997643322
Q ss_pred HHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC-
Q 004806 603 ARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS- 680 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~- 680 (729)
. -...+.+..|+..+. -+.-.....+.+|... .+...... ...+..+...|++.++.+.-.|+.+++++....
T Consensus 214 l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~ 288 (746)
T PTZ00429 214 I-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS 288 (746)
T ss_pred h-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC
Confidence 2 123445566666662 2222223444444331 22221111 235677778888889999999999999887653
Q ss_pred HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 681 ~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
+.....+.. ....+|+.|+ ++.+.++-.+..-|..+.
T Consensus 289 ~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 289 QELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence 222222211 1234555553 455667766666555443
|
|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.2e-05 Score=61.01 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=35.1
Q ss_pred cccCccccc---cCceecCCCccccHHHHHHHHhcCCCCCCCCCc
Q 004806 142 CCPLSLELM---TDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQ 183 (729)
Q Consensus 142 ~CpI~~~lm---~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~ 183 (729)
.|+||.+.+ ..|++++|||+||..||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999999 468889999999999999999 44467999985
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0045 Score=71.91 Aligned_cols=247 Identities=16% Similarity=0.162 Sum_probs=189.0
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCh------hhH-----------HHHHhcCcHHHHHHHHcCCCHHHH
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNM------DNR-----------MVIANCGAINILVDMLHSSETKIQ 503 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~------~nr-----------~~I~~~GaI~~Lv~LL~s~d~~v~ 503 (729)
...++.|+.-|+.+ +++....++..+..+..+.+ ..+ .+|...|.|..|+.++...|..|+
T Consensus 60 a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR 139 (970)
T KOG0946|consen 60 AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVR 139 (970)
T ss_pred HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhh
Confidence 45677888888743 77888899999998887652 111 234446999999999999999999
Q ss_pred HHHHHHHHHhhcC--CccHHHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc-hhhhhhccCcHHHHHHhhcC
Q 004806 504 ENAVTALLNLSIN--DNNKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLGN 579 (729)
Q Consensus 504 e~Al~aL~nLs~~--~~~k~~I~~~-g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~~ 579 (729)
..|+..|.+|-.. .+.+..+... -+|..|+.+|.+....+|-.+.-.|..|..+.. .++.++-..++..|+.++..
T Consensus 140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988443 4556666654 799999999999888899999999999988544 45555567999999999985
Q ss_pred CC----HHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhcC----CC--------HHH--HHHHHHHHHHHhCCc-
Q 004806 580 GT----PRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMD----PA--------AGM--VDKAVAVLANLATIP- 639 (729)
Q Consensus 580 ~~----~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL~----~~--------~~v--~e~Al~~L~nLa~~~- 639 (729)
.. --+..+|+..|.||.. +..|...+.+.+-||.|..+|. .+ ..+ +..++.++..|....
T Consensus 220 EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~N 299 (970)
T KOG0946|consen 220 EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGN 299 (970)
T ss_pred cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence 41 2468899999999987 5578888899999999998882 11 112 245677777776521
Q ss_pred ------chHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhhCCHhhHHHHHh
Q 004806 640 ------DGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCTNSSRFCSMVLQ 689 (729)
Q Consensus 640 ------e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~A~~aL~nL~~~~~~~~~~vl~ 689 (729)
.++.++...+++..|..++.+. ...++..++-++.++.+++..++..+.+
T Consensus 300 t~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 300 TSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred cHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 1235667788899999988764 5678888999999999999888887765
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00089 Score=77.76 Aligned_cols=231 Identities=17% Similarity=0.164 Sum_probs=158.4
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc----cHHHHHhcCCHHHHHHHhcCC-------CHHHHHHHHHHHHHhc
Q 004806 487 AINILVDMLHSSETKIQENAVTALLNLSINDN----NKSAIANANAIEPLIHVLQTG-------SPEARENAAATLFSLS 555 (729)
Q Consensus 487 aI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~----~k~~I~~~g~I~~Lv~lL~s~-------~~e~r~~Aa~aL~nLS 555 (729)
.+...+.+|++.+.+=+-.++..+.++..+.+ .++.|.++=+.+-|-++|+++ ....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 35566778888774444555666666654322 345677887778888999873 3557888899999999
Q ss_pred cCcchhhhhhccCcHHHHHHhhcCCCH-HHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHH
Q 004806 556 VIEDNKIKIGRSGAIGPLVDLLGNGTP-RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLAN 634 (729)
Q Consensus 556 ~~~e~k~~I~~~g~I~~Lv~LL~~~~~-~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~n 634 (729)
..++....---.+-||.|++.+...+. .+...|+.+|..++..++++..+++.|+|+.|++.+.......+.|+.+|.+
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~ 165 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLN 165 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHH
Confidence 876665432224789999999988776 9999999999999999999999999999999999996566778999999999
Q ss_pred HhCCcchHHHHHh-C----CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhh-----HHHHHhCCCHHHHHHhhhCC-
Q 004806 635 LATIPDGRVAIGQ-E----NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRF-----CSMVLQEGAVPPLVALSQSG- 703 (729)
Q Consensus 635 La~~~e~r~~i~~-~----g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~-----~~~vl~~G~v~~Lv~Ll~sg- 703 (729)
++...... ..-+ . ..++.|...+.......+-..+..|..+-...+.. ...-+-..+...|..++++.
T Consensus 166 Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~ 244 (543)
T PF05536_consen 166 LLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRL 244 (543)
T ss_pred HHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCC
Confidence 98743321 1111 1 22445555555555566677788887776665311 11112223455567777776
Q ss_pred CHHHHHHHHHHHHHh
Q 004806 704 TPRAKEKAQALLSYF 718 (729)
Q Consensus 704 ~~rvr~~A~~lL~~L 718 (729)
++.-|..|..+...|
T Consensus 245 ~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 245 TPSQRDPALNLAASL 259 (543)
T ss_pred CHHHHHHHHHHHHHH
Confidence 355555555544444
|
|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1e-05 Score=89.54 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=58.5
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcC----CCCCCCCCccCCCCCCcccH----HHHHHHHHHHHHcC
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG----LFVCPKTRQTLAHTTLIPNY----TVKALIANWCELNN 208 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~----~~~cP~t~~~l~~~~l~pN~----~l~~~I~~~~~~~~ 208 (729)
.+.+..||||++-..=|+.+.|||.||=.||.+||..+ ...||.|+..+..++|.|-+ .-+..++..+..||
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 44589999999999999999999999999999999854 45699999999998887753 23445666666666
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00065 Score=78.88 Aligned_cols=192 Identities=19% Similarity=0.181 Sum_probs=139.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc----hhhhhhccCcHHHHHHhhcCC-------CHHHHHHHHHHHHhcc
Q 004806 528 AIEPLIHVLQTGSPEARENAAATLFSLSVIED----NKIKIGRSGAIGPLVDLLGNG-------TPRGKKDAATALFNLS 596 (729)
Q Consensus 528 ~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e----~k~~I~~~g~I~~Lv~LL~~~-------~~~v~~~Al~aL~nLs 596 (729)
.+...+.+|+..+++-|-.++..+..+....+ .+..|.+.=+.+-|-.||+++ ....+..|+.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46677889998887777777788888876433 244577775678888999873 3466778899999999
Q ss_pred cCcHHHHHHHHcCcHHHHHHhc-CCCH-HHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 004806 597 IYHENKARIVQAGAVKHLVDLM-DPAA-GMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674 (729)
Q Consensus 597 ~~~en~~~lv~~G~V~~Lv~LL-~~~~-~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~ 674 (729)
..++....---.+.||.|++++ ..+. .++..++.+|..++.+++|+.++++.|+++.|++.+.+ .+...+.|+.+|.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 9777654333356899999998 4444 89999999999999999999999999999999999987 6678999999999
Q ss_pred HHhhCCHhhHHH---HHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 675 QLCTNSSRFCSM---VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 675 nL~~~~~~~~~~---vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+++.......-. -.-..+++.|...+.......+-.+..+|..|-.
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~ 213 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLP 213 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcC
Confidence 998865411100 0001345566666665555555555555555433
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00045 Score=72.51 Aligned_cols=233 Identities=21% Similarity=0.262 Sum_probs=161.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc
Q 004806 489 NILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS 567 (729)
Q Consensus 489 ~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~-~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~ 567 (729)
.-|+.||.+.++.++..|+..|.++... ..+.... +...++.+.+++....+ .+.|+.+|.|++.....+..+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 3578899999999999999999888765 3333322 23567778888877665 678899999999999888888776
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH-------cCcHHHHHHhcCCCH---HHHHHHHHHHHHHhC
Q 004806 568 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-------AGAVKHLVDLMDPAA---GMVDKAVAVLANLAT 637 (729)
Q Consensus 568 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~-------~G~V~~Lv~LL~~~~---~v~e~Al~~L~nLa~ 637 (729)
.+..++..+.+.........+.+|.||+..+.....+.. .|.+.....+++.+. .-......++.||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 888888988888777888899999999997766554432 344444444554221 234567889999999
Q ss_pred CcchHHHHHhCCc--HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCC--CHHHHH----------------
Q 004806 638 IPDGRVAIGQENG--IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG--AVPPLV---------------- 697 (729)
Q Consensus 638 ~~e~r~~i~~~g~--I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G--~v~~Lv---------------- 697 (729)
...||..+.+... +..++.+-..++.--+...+.+|.|+|.... +...++.++ .++.|+
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~-~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~ 240 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK-LHEVLLDESINLLPAILLPLAGPEELSEEDMAK 240 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch-hHHHHhcchHHHHHHHHhhcCCccccCHHHHhc
Confidence 9999999987663 2233333333455556778889999998765 333333321 222221
Q ss_pred -----HhhhC-----CCHHHHHHHHHHHHHhhcCcCcCC
Q 004806 698 -----ALSQS-----GTPRAKEKAQALLSYFRNQRHGNA 726 (729)
Q Consensus 698 -----~Ll~s-----g~~rvr~~A~~lL~~L~~~~~~~~ 726 (729)
.++.. .++.++++-.++|-.|...++||+
T Consensus 241 LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe 279 (353)
T KOG2973|consen 241 LPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGRE 279 (353)
T ss_pred CCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHH
Confidence 23321 246788888888888877777653
|
|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.4e-05 Score=81.73 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=45.0
Q ss_pred CcccccCccccccCceecCCCccccHHHHHH-HHhcCCCCCCCCCccCCCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKK-WIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~-~~~~~~~~cP~t~~~l~~~~ 189 (729)
.+|.|+||.+.|.+|+-++|||.||=.||-. |-.+....||.||+......
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4899999999999999999999999999999 87776667999998765543
|
|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.1e-05 Score=89.74 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=49.3
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
-+.||.|..=.+|-|++.|||.||-.||+..+......||.|+..|...++.|
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 37899999999999999999999999999999988889999999998888765
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.8e-05 Score=55.76 Aligned_cols=40 Identities=38% Similarity=0.521 Sum_probs=37.8
Q ss_pred ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 004806 475 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 514 (729)
Q Consensus 475 s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs 514 (729)
+++++..+.+.|+|+.|+.+|++.+.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999996
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00084 Score=75.28 Aligned_cols=232 Identities=17% Similarity=0.152 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---cChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAK---HNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN 518 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~---~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~ 518 (729)
......-|..+|...+.+++..+-..|..+-. .++.. +--...++.|+.-+.++++.+|..|+..|.....-..
T Consensus 206 l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 206 LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC
Confidence 35677888999999999998655544443322 12211 1123678999999999999999999988877754333
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCH-HHHHHHHH---HHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 519 NKSAIANANAIEPLIHVLQTGSP-EARENAAA---TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~-e~r~~Aa~---aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
..-...-.|.+..++..+.+... .+++.+.. .|..+...+..+..|--...|..|...+.+.....+..++..+..
T Consensus 283 ~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 283 RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 33344455777777777766554 34444432 334444444444343223577888889999999999999999999
Q ss_pred cccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 004806 595 LSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 673 (729)
Q Consensus 595 Ls~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL 673 (729)
|-....+..........+.|+.-| +.+..++..++.+|+++|........ ...+..|+++......-....+..++
T Consensus 363 l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lII 439 (675)
T KOG0212|consen 363 LYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLII 439 (675)
T ss_pred HHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHH
Confidence 877777777667788889999888 67788999999999999997766511 12345556666667777888899999
Q ss_pred HHHhhC
Q 004806 674 LQLCTN 679 (729)
Q Consensus 674 ~nL~~~ 679 (729)
..||.-
T Consensus 440 RqlC~l 445 (675)
T KOG0212|consen 440 RQLCLL 445 (675)
T ss_pred HHHHHH
Confidence 999974
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.004 Score=65.92 Aligned_cols=248 Identities=14% Similarity=0.180 Sum_probs=178.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhH----HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR----MVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr----~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~ 518 (729)
...++.|-..|..++..++.-++..+..+..+...|- ..++.+|..+.++..+-.+|.++...|...|..++..+.
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 4567777777888888888888888887777655332 234577999999999999999999999999999999888
Q ss_pred cHHHHHhcCCHHHH--HHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcC-CCHHHHHHHHHHHHh
Q 004806 519 NKSAIANANAIEPL--IHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGN-GTPRGKKDAATALFN 594 (729)
Q Consensus 519 ~k~~I~~~g~I~~L--v~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~n 594 (729)
.-..|.+...++.+ ..+-..-+.-+|......+..+.+ .++.....-..|.+..|..=|+- .+.-++..++.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 88888888766654 333333445566667777776655 34444444556888877766654 577778888888999
Q ss_pred cccCcHHHHHHHHcCcHHHHHHhc---CCCHHHHHHHH----HHHHHHhCCcchHHHHHhC--CcHHHHHHHHccCCHHH
Q 004806 595 LSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAV----AVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARG 665 (729)
Q Consensus 595 Ls~~~en~~~lv~~G~V~~Lv~LL---~~~~~v~e~Al----~~L~nLa~~~e~r~~i~~~--g~I~~Lv~lL~s~s~~~ 665 (729)
|+..+..++.+.+.|+|+.+..++ +.++--.-.++ ..+.+.+.-.-.-+++++. -+|...++++...++..
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda 320 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA 320 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence 999999999999999999999998 23332222233 3444444333233445443 24667778888999999
Q ss_pred HHHHHHHHHHHhhCCHhhHHHHHhCC
Q 004806 666 KENAAAALLQLCTNSSRFCSMVLQEG 691 (729)
Q Consensus 666 ke~A~~aL~nL~~~~~~~~~~vl~~G 691 (729)
++.|+.+|..|.++.. ..+.+..-|
T Consensus 321 ieaAiDalGilGSnte-GadlllkTg 345 (524)
T KOG4413|consen 321 IEAAIDALGILGSNTE-GADLLLKTG 345 (524)
T ss_pred HHHHHHHHHhccCCcc-hhHHHhccC
Confidence 9999999999988765 445555544
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.011 Score=65.61 Aligned_cols=272 Identities=15% Similarity=0.168 Sum_probs=180.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d--~~v~e~Al~aL~nLs~~~~~k 520 (729)
...+..+..++-+++.+++..+.+.+|.+..+ ...-..+.+.+.--.++.-|..++ ..=+++|+..+..+..-..+.
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 34555555455556689999999999999884 466777777776667777776543 223678888887764332221
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcH
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e 600 (729)
.. ...|.+..|+.+....++..+..+..+|+.|+.. +-..+...|++..|++.+.++...+....+.++..+...+.
T Consensus 103 ~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 103 KE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 11 2447888999999999999999999999999863 22345567999999999988877788888889999988888
Q ss_pred HHHHHHHcCcHHHHHHhc-CC-------CH--HHHHHHHHHHHHHhCCcchHHHHHhC--CcHHHHHHHHccCCHHHHHH
Q 004806 601 NKARIVQAGAVKHLVDLM-DP-------AA--GMVDKAVAVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARGKEN 668 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL-~~-------~~--~v~e~Al~~L~nLa~~~e~r~~i~~~--g~I~~Lv~lL~s~s~~~ke~ 668 (729)
.|..+...--+..++.-+ +. +. .....+..++..+-.+=.|--.+... .++..|+..|..+++.+++.
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 887666544444444433 21 22 22333444444443333343333322 35677777777666666666
Q ss_pred HHHHHHHHhhCC--------------------------------------------H----h----hHHHHHhCCCHHHH
Q 004806 669 AAAALLQLCTNS--------------------------------------------S----R----FCSMVLQEGAVPPL 696 (729)
Q Consensus 669 A~~aL~nL~~~~--------------------------------------------~----~----~~~~vl~~G~v~~L 696 (729)
...++..+-.-. . . ....+++.|.++.|
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L 339 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL 339 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence 665555443100 0 0 11234678999999
Q ss_pred HHhhhCC-CHHHHHHHHHHHHHh
Q 004806 697 VALSQSG-TPRAKEKAQALLSYF 718 (729)
Q Consensus 697 v~Ll~sg-~~rvr~~A~~lL~~L 718 (729)
+.++.+. ++.+.+||.-+|..+
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHH
Confidence 9999998 688999999888754
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00028 Score=78.46 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=132.8
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHHHHhcCCCH
Q 004806 463 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSP 541 (729)
Q Consensus 463 ~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv~lL~s~~~ 541 (729)
.++.+|..+++.-..-|.-+.+...+++|+.+|..++..+.--+...++|+... .+-+..+.+.|.|..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 455566677775556777888889999999999887776777778888998654 5668888999999999999999999
Q ss_pred HHHHHHHHHHHHhccCcch--hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-cH---HHHHHHHcC----cH
Q 004806 542 EARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HE---NKARIVQAG----AV 611 (729)
Q Consensus 542 e~r~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~e---n~~~lv~~G----~V 611 (729)
.++.++.|+|..+-.+.+. +-.....-++..++++.+++.-.++..++..|.|++.+ .. .+..++++- ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999999886444 44556667789999999999999999999999999652 22 222222221 33
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHH
Q 004806 612 KHLVDLMD-PAAGMVDKAVAVLANLATIPDGRV 643 (729)
Q Consensus 612 ~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~ 643 (729)
+.|++.++ .++-..+..+.+|.+++.+.+...
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~ 600 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLD 600 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHH
Confidence 34444443 233334556777777777655543
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.013 Score=64.47 Aligned_cols=236 Identities=17% Similarity=0.183 Sum_probs=174.7
Q ss_pred HHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC------Ccc----HHHHHhcCCHHHHH
Q 004806 464 ATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN------DNN----KSAIANANAIEPLI 533 (729)
Q Consensus 464 Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~------~~~----k~~I~~~g~I~~Lv 533 (729)
.+..+..+|. -|.---.+++.++|+.|+.+|.+++.++....+..|..|.-. .+. -.++++.++++.|+
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 5566666666 566777889999999999999999999999888888888531 222 23455678888888
Q ss_pred HHhcCCC------HHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCC--CHHHHHHHHHHHHhccc-CcHHHH
Q 004806 534 HVLQTGS------PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAATALFNLSI-YHENKA 603 (729)
Q Consensus 534 ~lL~s~~------~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~aL~nLs~-~~en~~ 603 (729)
.-+..-+ .....++.+.+-|+.. .+.....+++.|.+.-|+.-+... -...+..|..+|.-+-. ..+++.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 8765432 3356677888888877 456677788888888887754432 23456667777776655 445888
Q ss_pred HHHHcCcHHHHHHhc------C----CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 004806 604 RIVQAGAVKHLVDLM------D----PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 673 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL------~----~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL 673 (729)
.+....+|..|++-+ + +...+.++....|..+...++++..++...|++...-+++. ....+-.|+.+|
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL 341 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL 341 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence 888889999998866 2 13467888899999999999999999988887765555554 445666788999
Q ss_pred HHHhhCCH--hhHHHHHhCCCHHHHHHhhh
Q 004806 674 LQLCTNSS--RFCSMVLQEGAVPPLVALSQ 701 (729)
Q Consensus 674 ~nL~~~~~--~~~~~vl~~G~v~~Lv~Ll~ 701 (729)
-....+.+ .+|...++.+++..+.-+..
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 88888765 68999999888877777665
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=3.1e-05 Score=83.67 Aligned_cols=51 Identities=27% Similarity=0.496 Sum_probs=46.8
Q ss_pred ccccCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 141 FCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
+.|.|++++-++||+-+ +||.|||+-|++|+.+. .+||+|+++|+.++|+|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~-G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET-GKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHc-CCCCCCCCcCCHHHeee
Confidence 57999999999999986 89999999999999986 45999999999988877
|
|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=5e-05 Score=83.73 Aligned_cols=72 Identities=25% Similarity=0.404 Sum_probs=60.0
Q ss_pred CCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC-----CCcccHHHHHHHHHHHHH
Q 004806 134 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-----TLIPNYTVKALIANWCEL 206 (729)
Q Consensus 134 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-----~l~pN~~l~~~I~~~~~~ 206 (729)
+..++.+|-|-||..++.+||++||||+||+.||.+.+... .-||.||.++.+. ...+|+.+..+|..|+..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~-~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQE-TECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccC-CCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 45579999999999999999999999999999999977754 4599999988642 334577888999988764
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00085 Score=73.50 Aligned_cols=181 Identities=16% Similarity=0.169 Sum_probs=139.3
Q ss_pred hHHHHHhcCcHHHHHHHHcCCCHH--HHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 004806 478 NRMVIANCGAINILVDMLHSSETK--IQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQT-GSPEARENAAATLFSL 554 (729)
Q Consensus 478 nr~~I~~~GaI~~Lv~LL~s~d~~--v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nL 554 (729)
....|..-|+++.|+.++..++-+ ++.+|...|..+. ..+|+..++..| +..++.+-+. ..++.....+.+|.+|
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 344566779999999999998755 4788888887763 345777777766 5555555543 3478888899999999
Q ss_pred ccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc--CcHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHH
Q 004806 555 SVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVA 630 (729)
Q Consensus 555 S~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~--~~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~ 630 (729)
-.+ ++....+++.|++..++-.++..++.+.++|+.+|.|+.. ..+.+.+|++..+..-|..|-. .+.-++-.|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 774 5567788889999999988999999999999999999887 4567888999988888888763 44445677888
Q ss_pred HHHHHhCCcchHHHHHhCCcHHHHHHHHcc
Q 004806 631 VLANLATIPDGRVAIGQENGIPVLVEVVEL 660 (729)
Q Consensus 631 ~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s 660 (729)
+++.|+++.+....+-..|.+..+--++.+
T Consensus 330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~ 359 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRKSGTLALVEPLVAS 359 (832)
T ss_pred HHhhhhhhhhhhHHHhhccchhhhhhhhhc
Confidence 999999988888888777765444334433
|
|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=97.56 E-value=7.4e-05 Score=63.13 Aligned_cols=44 Identities=30% Similarity=0.620 Sum_probs=34.7
Q ss_pred CCCcccccCccccccCc-------------eecCCCccccHHHHHHHHhcCCCCCCCCC
Q 004806 137 IPSDFCCPLSLELMTDP-------------VIVASGQTYERAFIKKWIDLGLFVCPKTR 182 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dP-------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~ 182 (729)
++++- |+||++-|.|| +..+|||.|-..||.+|+... .+||.||
T Consensus 17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR 73 (73)
T PF12678_consen 17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-NTCPLCR 73 (73)
T ss_dssp SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-SB-TTSS
T ss_pred CcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-CcCCCCC
Confidence 34443 99999999555 335899999999999999876 4899997
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D .... |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00075 Score=75.17 Aligned_cols=182 Identities=12% Similarity=0.109 Sum_probs=141.0
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
-|.-+.+....++|+++|..++..+.-.+...++|+.. ....+..+.+.|.|..|+.++.+.+...+....|.|++|..
T Consensus 423 LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmy 502 (743)
T COG5369 423 LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMY 502 (743)
T ss_pred HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhh
Confidence 36667778899999999998777777778888999877 56668888899999999999999899999999999999987
Q ss_pred CcH--HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc----chHHHHHhCC----cHHHHHHHHccCCHHHH
Q 004806 598 YHE--NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP----DGRVAIGQEN----GIPVLVEVVELGSARGK 666 (729)
Q Consensus 598 ~~e--n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~----e~r~~i~~~g----~I~~Lv~lL~s~s~~~k 666 (729)
+.+ .+-+++..-++..++++. ++...+.+.++.+|.|+.... +.+..++... ....|++.++..+|...
T Consensus 503 ncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i 582 (743)
T COG5369 503 NCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI 582 (743)
T ss_pred cCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh
Confidence 443 345667777888899998 688899999999999997722 2233222221 35667777888899888
Q ss_pred HHHHHHHHHHhhCCHhhHHHHHh-CCCHHHHHHhh
Q 004806 667 ENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALS 700 (729)
Q Consensus 667 e~A~~aL~nL~~~~~~~~~~vl~-~G~v~~Lv~Ll 700 (729)
+..+.+|.++++.++..++.|.+ ...+..+..++
T Consensus 583 ~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 583 LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 89999999999888766666664 34444444444
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0087 Score=65.20 Aligned_cols=184 Identities=24% Similarity=0.329 Sum_probs=131.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
..+..+++.+.+.+..++..|+..+..+.. .-+++.|..+|.+.++.++..|+.+|.++-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 468889999998888888888888555432 357899999999999999999999887773
Q ss_pred HhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHH------------HHHHHH
Q 004806 524 ANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG------------KKDAAT 590 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v------------~~~Al~ 590 (729)
....++.|+.+|. +.+..++..++.+|..+- ...++.+|+.++.+..... +..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 2357899999998 578889999999998763 3456888888888865332 333333
Q ss_pred HHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHH
Q 004806 591 ALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENA 669 (729)
Q Consensus 591 aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A 669 (729)
+|..+ -....++.+..++ +....++..|..+|..+.... ..+...+...+...+..++..+
T Consensus 172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 33332 2244667777777 455677788888888877654 2334666666666777776666
Q ss_pred HHHHHHH
Q 004806 670 AAALLQL 676 (729)
Q Consensus 670 ~~aL~nL 676 (729)
+.+|..+
T Consensus 234 ~~~l~~~ 240 (335)
T COG1413 234 LLALGEI 240 (335)
T ss_pred HHHhccc
Confidence 6665544
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0097 Score=65.98 Aligned_cols=248 Identities=15% Similarity=0.136 Sum_probs=170.6
Q ss_pred HHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCC--CHHHHH
Q 004806 468 LRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG--SPEARE 545 (729)
Q Consensus 468 L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~--~~e~r~ 545 (729)
|..+-+..+.-+..+.-....+.+..++-+++.+++..+.+++..+..+...-..+...+.---++.-|... ...-|+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~ 86 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVERE 86 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence 333344445555555444555666655656669999999999999988888877787777666666666554 356788
Q ss_pred HHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHH
Q 004806 546 NAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGM 624 (729)
Q Consensus 546 ~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v 624 (729)
+|...+..+.........+ -.|++..++.+..+.+.+.+..|+.+|+.|+..+ -..++..|++..|++.+ +....+
T Consensus 87 QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~ 163 (371)
T PF14664_consen 87 QALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSI 163 (371)
T ss_pred HHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhH
Confidence 9999888876553332222 3588999999999999999999999999998743 24567899999999987 555558
Q ss_pred HHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC-------CH--HHHHHHHHHHHHHhhCCHhhHHHHHh-CCCHH
Q 004806 625 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG-------SA--RGKENAAAALLQLCTNSSRFCSMVLQ-EGAVP 694 (729)
Q Consensus 625 ~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~-------s~--~~ke~A~~aL~nL~~~~~~~~~~vl~-~G~v~ 694 (729)
.+..+.++-.+..++..|..+...--+..++.-+... +. ..-..+..++..+-+.=+.....-.. ..++.
T Consensus 164 ~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lk 243 (371)
T PF14664_consen 164 SESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLK 243 (371)
T ss_pred HHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHH
Confidence 8889999999999999998876544455555444221 22 23344455554444332211111111 24788
Q ss_pred HHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 695 PLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 695 ~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
.|+..++..++++|+...++|--+
T Consensus 244 sLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 244 SLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH
Confidence 899999999999999888866544
|
|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.51 E-value=6e-05 Score=83.90 Aligned_cols=66 Identities=18% Similarity=0.451 Sum_probs=56.6
Q ss_pred CCCcccccCccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc-cHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP-NYTVKALIANW 203 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p-N~~l~~~I~~~ 203 (729)
+.+++.||||..++.||+. +.|||.||+.||..|+.. +..||.|+..+.....+| -..++..+..|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 6778999999999999999 499999999999999998 577999999988877776 34566666665
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0034 Score=74.79 Aligned_cols=202 Identities=19% Similarity=0.209 Sum_probs=153.9
Q ss_pred HhcCcHHHHHHHHcCCCHHHHHHHHHHHHH-hhcCCccHHHHHhcCCHHHHHHHhcC-C--CHHHHHHHHHHHHHhcc-C
Q 004806 483 ANCGAINILVDMLHSSETKIQENAVTALLN-LSINDNNKSAIANANAIEPLIHVLQT-G--SPEARENAAATLFSLSV-I 557 (729)
Q Consensus 483 ~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~n-Ls~~~~~k~~I~~~g~I~~Lv~lL~s-~--~~e~r~~Aa~aL~nLS~-~ 557 (729)
...|..|..++||++.-.+++---+-+=.. |+.++..+..++..++-...+.+|.. + +++-|..|+-+|..+.. +
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 345999999999999988877654444334 47788888888888888888888876 3 25788888888888877 4
Q ss_pred cchhhhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHH
Q 004806 558 EDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLAN 634 (729)
Q Consensus 558 ~e~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~n 634 (729)
.-.+....+.+.|...+..|.++ .+-++..++-+|..|-. ++++|+.-++.++...|..+| ++-.+++..|+.+|+.
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 55677777789999999999986 67888899999999865 788999889999999999999 5678899999999998
Q ss_pred HhCC-----cchHHHH------------HhCCcH---HHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhH
Q 004806 635 LATI-----PDGRVAI------------GQENGI---PVLVEVVELGSARGKENAAAALLQLCTNSSRFC 684 (729)
Q Consensus 635 La~~-----~e~r~~i------------~~~g~I---~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~ 684 (729)
+..+ ++....+ ++.... -.++.++..+++.++...+.+|..+..+...+.
T Consensus 669 fl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 669 FLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHL 738 (1387)
T ss_pred HhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHh
Confidence 8773 3332211 111122 256666777899998888888888877665433
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.015 Score=66.16 Aligned_cols=239 Identities=19% Similarity=0.234 Sum_probs=162.1
Q ss_pred HHHHHHHHHHh----------cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-----CHHHHHHHH
Q 004806 443 ETQVRKLVEDL----------KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-----ETKIQENAV 507 (729)
Q Consensus 443 ~~~V~~Lv~~L----------~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-----d~~v~e~Al 507 (729)
+..+..|+++- ...+..+..+|+++|.++...++..|..+.+.|..+.++..|+.. +.++.-...
T Consensus 21 ~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~ 100 (446)
T PF10165_consen 21 EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDS 100 (446)
T ss_pred HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHH
Confidence 45667777765 245778899999999999999999999999999999999999875 778888888
Q ss_pred HHHHHhhc-CCccHHHHH-hcCCHHHHHHHhcC-----------------CCHHHHHHHHHHHHHhccCcchhhhhhccC
Q 004806 508 TALLNLSI-NDNNKSAIA-NANAIEPLIHVLQT-----------------GSPEARENAAATLFSLSVIEDNKIKIGRSG 568 (729)
Q Consensus 508 ~aL~nLs~-~~~~k~~I~-~~g~I~~Lv~lL~s-----------------~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g 568 (729)
++|.-++. ....+..++ +.+++..|+..|.. ........++.+|||+.........-....
T Consensus 101 RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~ 180 (446)
T PF10165_consen 101 RLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSP 180 (446)
T ss_pred HHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhH
Confidence 88877754 445555554 45788877776531 134467788999999977433322211224
Q ss_pred cHHHHHHhhcC---------CCHHHHHHHHHHHHhcccC-cHH-------H----HHHHHcCcHHHHHHhcC------CC
Q 004806 569 AIGPLVDLLGN---------GTPRGKKDAATALFNLSIY-HEN-------K----ARIVQAGAVKHLVDLMD------PA 621 (729)
Q Consensus 569 ~I~~Lv~LL~~---------~~~~v~~~Al~aL~nLs~~-~en-------~----~~lv~~G~V~~Lv~LL~------~~ 621 (729)
.++.|+.+|.. ........++.+|.|+-.. ... . .......++..|+.+|+ ..
T Consensus 181 ~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~ 260 (446)
T PF10165_consen 181 SIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEA 260 (446)
T ss_pred HHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCc
Confidence 44444444321 1346677888888888321 111 0 00122447778888873 11
Q ss_pred ---HHHHHHHHHHHHHHhCC-cchHHHHHh--------------CC--cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 622 ---AGMVDKAVAVLANLATI-PDGRVAIGQ--------------EN--GIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 622 ---~~v~e~Al~~L~nLa~~-~e~r~~i~~--------------~g--~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.....-.+.+|..++.. ...|..+.. .| .-..|++++.+..+.++..++..|+.||..+.
T Consensus 261 ~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 261 LKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred ccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 24556677888888875 444554432 12 35789999988889999999999999998765
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.002 Score=73.55 Aligned_cols=268 Identities=14% Similarity=0.098 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
....++++++++++.++.++..|+.++-.+.-.. +....... .++.-|..+-.+++++|+.+.+.+|.-|..-...|
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk 249 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK 249 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh
Confidence 3678999999999999999999999998776532 33333332 46677777777889999999999998775322111
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc--CcHHHHHHhhcCCCH----------------
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGNGTP---------------- 582 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~--g~I~~Lv~LL~~~~~---------------- 582 (729)
-.---.+.++.+++.-++.+.++-..|+.....++..+-.+..+... ..||.|+.=+...+.
T Consensus 250 l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpD 329 (885)
T KOG2023|consen 250 LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPD 329 (885)
T ss_pred cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCc
Confidence 11111356777788888888889999999999998877666655442 566666653332110
Q ss_pred ----------------------------------------HHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc----
Q 004806 583 ----------------------------------------RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM---- 618 (729)
Q Consensus 583 ----------------------------------------~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL---- 618 (729)
.+++-.+.+|--| ..+....+++.++.+|
T Consensus 330 reeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVL-------anvf~~elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 330 REEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVL-------ANVFGDELLPILLPLLKEHL 402 (885)
T ss_pred hhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHH-------HHhhHHHHHHHHHHHHHHHc
Confidence 0111111111111 1123345566666665
Q ss_pred -CCCHHHHHHHHHHHHHHhCCcchHHHHHhC--CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHH
Q 004806 619 -DPAAGMVDKAVAVLANLATIPDGRVAIGQE--NGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVP 694 (729)
Q Consensus 619 -~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~--g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~ 694 (729)
.++..+++.++-+|+.+|. .+-.-+... ..||.|+.+|....+.++.-.+|+|...+..-- +..+.... .++.
T Consensus 403 ~~~~W~vrEagvLAlGAIAE--GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~ 479 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAE--GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLE 479 (885)
T ss_pred CcchhhhhhhhHHHHHHHHH--HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHH
Confidence 3567788888888888874 112222221 258889999999999999999999976554311 01111111 1355
Q ss_pred HHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 695 PLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 695 ~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.|++.+-.++.+|++.|..+...|...
T Consensus 480 ~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 480 GLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 566666778899999999988877664
|
|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=6.6e-05 Score=79.10 Aligned_cols=66 Identities=15% Similarity=0.331 Sum_probs=54.0
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCC----CCcccHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT----TLIPNYTVKALIANW 203 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~----~l~pN~~l~~~I~~~ 203 (729)
+=....|++|..+|.|+-++ -|=|||||+||-+||.. ..+||.|+..+..+ .+.++.+|+.++.++
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 44568899999999999986 59999999999999998 46799999877654 456677777776654
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.006 Score=66.48 Aligned_cols=189 Identities=29% Similarity=0.336 Sum_probs=131.2
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 565 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~ 565 (729)
..++.++.+|.+.+..++..|...|..+. ...+++.|..+|.+.+..+|..|+.+|..+ .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 57889999999999999999998876552 335789999999999999999999977765 3
Q ss_pred ccCcHHHHHHhhc-CCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHH-HHhCCcchH-
Q 004806 566 RSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLA-NLATIPDGR- 642 (729)
Q Consensus 566 ~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~-nLa~~~e~r- 642 (729)
...+++.|+.+|. +++..++..|+++|..+-. ..++..|+.++....... +...+. .+. ..|
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~--a~~~~~~~~~---~~r~ 167 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGS--AAAALDAALL---DVRA 167 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhh--hhhhccchHH---HHHH
Confidence 3578999999999 5899999999999998733 233667777774322111 111110 000 111
Q ss_pred ---HHH---HhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHH
Q 004806 643 ---VAI---GQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716 (729)
Q Consensus 643 ---~~i---~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~ 716 (729)
..+ .....++.+...+......++..|+.+|..+.... ..+.+.+...+..+...++.++...|.
T Consensus 168 ~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~ 238 (335)
T COG1413 168 AAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALG 238 (335)
T ss_pred HHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 111 12346889999999989999999999999888775 223455555555555556555555554
Q ss_pred Hh
Q 004806 717 YF 718 (729)
Q Consensus 717 ~L 718 (729)
.+
T Consensus 239 ~~ 240 (335)
T COG1413 239 EI 240 (335)
T ss_pred cc
Confidence 43
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00029 Score=52.32 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=37.7
Q ss_pred cchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 639 PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 639 ~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
++.+..+++.|+++.|+.+|.+.++.++++|+++|+|||+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5778999999999999999999999999999999999984
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.049 Score=60.03 Aligned_cols=238 Identities=16% Similarity=0.160 Sum_probs=171.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-----hhh----HHHHHhcCcHHHHHHHHcCCC------HHHHHHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHN-----MDN----RMVIANCGAINILVDMLHSSE------TKIQENAV 507 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s-----~~n----r~~I~~~GaI~~Lv~LL~s~d------~~v~e~Al 507 (729)
-..|+.|+++|.+.+.++-...+..|+.|+-.+ .+. -..+++.+.++.|+.-+..=| ..-..+++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 357899999999999999999999999887643 222 234555688888888775433 23356777
Q ss_pred HHHHHhhc-CCccHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhc---CC
Q 004806 508 TALLNLSI-NDNNKSAIANANAIEPLIHVLQTG--SPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLG---NG 580 (729)
Q Consensus 508 ~aL~nLs~-~~~~k~~I~~~g~I~~Lv~lL~s~--~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~---~~ 580 (729)
.++.|+.. .+.....+++.|.+..|+.-+... -..-+.+|..+|.-+-.+ .+++..++...+|..|+.-+. ..
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 88888854 567778888888888877755433 355788888888887775 448888888888888877653 11
Q ss_pred ------CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchH---HHHHhCCcH
Q 004806 581 ------TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGR---VAIGQENGI 651 (729)
Q Consensus 581 ------~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r---~~i~~~g~I 651 (729)
..+...+-..+|+.+...+.|+.+++...+++.+.-++....-.+-.++++|-.+...+++. ..+++..|+
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGL 363 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGL 363 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhH
Confidence 13456667778888888999999999988887766666544445567899999998877764 455666677
Q ss_pred HHHHHHHc-c---------CCHHHHHHHHHHHHHHhhCC
Q 004806 652 PVLVEVVE-L---------GSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 652 ~~Lv~lL~-s---------~s~~~ke~A~~aL~nL~~~~ 680 (729)
..++.+.. . .-...-++.+.+|+.+-.+.
T Consensus 364 rtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 364 RTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 66665543 1 22456788888888887654
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0062 Score=69.27 Aligned_cols=257 Identities=16% Similarity=0.164 Sum_probs=166.4
Q ss_pred HHHHHHhhccChhhHHHHHhcCcHHHHHHHH----------cCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHH
Q 004806 465 TAELRLLAKHNMDNRMVIANCGAINILVDML----------HSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLI 533 (729)
Q Consensus 465 l~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL----------~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv 533 (729)
+..|+.|+++ +.+...+....++..|+.+- ...+..+..+|+.+|+|+... +..|..+.+.|+.+.++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 5566667663 45555566556666666654 345788999999999998765 66788888999999999
Q ss_pred HHhcCC-----CHHHHHHHHHHHHHhcc-Ccchhhhhhcc-CcHHHHHHhhcC-----------------CCHHHHHHHH
Q 004806 534 HVLQTG-----SPEARENAAATLFSLSV-IEDNKIKIGRS-GAIGPLVDLLGN-----------------GTPRGKKDAA 589 (729)
Q Consensus 534 ~lL~s~-----~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~-g~I~~Lv~LL~~-----------------~~~~v~~~Al 589 (729)
..|+.. +.+..-...++||-++. ..+.+..+++. +++..++..|.. ........++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999877 68888899999998876 45566666654 777777766531 1234567889
Q ss_pred HHHHhcccCcHHHHHHHHcC----cHHHHHHhc---C---CCHHHHHHHHHHHHHHhCC-cch-------HHHH----Hh
Q 004806 590 TALFNLSIYHENKARIVQAG----AVKHLVDLM---D---PAAGMVDKAVAVLANLATI-PDG-------RVAI----GQ 647 (729)
Q Consensus 590 ~aL~nLs~~~en~~~lv~~G----~V~~Lv~LL---~---~~~~v~e~Al~~L~nLa~~-~e~-------r~~i----~~ 647 (729)
++++|+..+......--..+ ++..|..++ . +.......++.+|.|+--. .+. ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 99999976332221111222 334444441 1 2244566777777777211 111 1111 11
Q ss_pred CCcHHHHHHHHcc----CC----HHHHHHHHHHHHHHhhCCHhhHHHHHh----------------CCCHHHHHHhhhCC
Q 004806 648 ENGIPVLVEVVEL----GS----ARGKENAAAALLQLCTNSSRFCSMVLQ----------------EGAVPPLVALSQSG 703 (729)
Q Consensus 648 ~g~I~~Lv~lL~s----~s----~~~ke~A~~aL~nL~~~~~~~~~~vl~----------------~G~v~~Lv~Ll~sg 703 (729)
...+..|+.+|.. .. .....--+.+|..++..+...+..+.. ...-..|++++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2247777777743 11 234445666777778776555544432 13567799999998
Q ss_pred CHHHHHHHHHHHHHhhcCc
Q 004806 704 TPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 704 ~~rvr~~A~~lL~~L~~~~ 722 (729)
.+.+|..+.++|-.|....
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 8999999999998886543
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.026 Score=63.42 Aligned_cols=151 Identities=24% Similarity=0.150 Sum_probs=114.6
Q ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 486 GAINILVDMLH-SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 486 GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
.+++.|+..|. .++.++...++.+|. ..+. ..++..|+..|.+.++.++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWL---------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence 46888999994 566777665555553 2211 12389999999999999999999988754
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHH
Q 004806 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 643 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~ 643 (729)
...++.+.|+.+|.+.++.++..++.++.. ......+.|..+| +.+..+...|+.+|+.|..
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------ 176 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR------ 176 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 445788999999999999999888877766 2223456788888 5778889999999998764
Q ss_pred HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 644 AIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 644 ~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
...++.|...+.+.++.++..|+.+|..+.
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 245677888888899999999998886663
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.024 Score=67.59 Aligned_cols=134 Identities=21% Similarity=0.271 Sum_probs=103.4
Q ss_pred HHHHHHHHHhhccChhhHHHHHh----cCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHh
Q 004806 462 REATAELRLLAKHNMDNRMVIAN----CGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL 536 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~----~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL 536 (729)
..++.+|+++.+.+++....+.. .|-++.++.+|.. .+++++.-|+.++.-+..+.+.-..+++.+.+..|+.+|
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHH
Confidence 45888999999888866555543 2888888888875 588999999999988888888888899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhh-cCCCHHHHHHHHHHHHhcc
Q 004806 537 QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 537 ~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs 596 (729)
.+ -+..|+-++.+|..|+++.+....-.+.|++..+.+++ .+..++.+..|+..|..|.
T Consensus 1823 HS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1823 HS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred hc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 76 47789999999999999887766666677766666554 3445666666666666554
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0016 Score=66.95 Aligned_cols=179 Identities=20% Similarity=0.191 Sum_probs=110.3
Q ss_pred cCCCHHHHHHHHHHHHHhhccC--hhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCH
Q 004806 454 KSTSLDTQREATAELRLLAKHN--MDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAI 529 (729)
Q Consensus 454 ~s~~~evq~~Al~~L~~La~~s--~~nr~~I~~~--GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I 529 (729)
.+.+++.+.+|+..|+.+...+ ......+... ..+..++..+.+....+...|+.+|..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678999999999999998876 2333333321 55566777777667778899999998887542222111233578
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCc-HHHHHHhhcCCCHHHHHHHHHHHHhcccCcH-HHHHHHH
Q 004806 530 EPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGA-IGPLVDLLGNGTPRGKKDAATALFNLSIYHE-NKARIVQ 607 (729)
Q Consensus 530 ~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~-I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e-n~~~lv~ 607 (729)
+.|++.+.++...++..|..+|..+...-... ..+ ++.+...+.+.++.++..++..|..+..... ....+-.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 89999999988889999999999887643311 122 5666677788899999999998888765332 1111111
Q ss_pred ----cCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 608 ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 608 ----~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
..+++.+..++ |.+..+++.|-.++..+..
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 34666777777 6888999999888888865
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0014 Score=56.56 Aligned_cols=86 Identities=31% Similarity=0.430 Sum_probs=70.4
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhc
Q 004806 488 INILVDML-HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR 566 (729)
Q Consensus 488 I~~Lv~LL-~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~ 566 (729)
|+.|+..| +++++.++..|+.+|.++- ...+++.|+.+++++++.++..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 67899988 8889999999999998542 224599999999999999999999999976 34
Q ss_pred cCcHHHHHHhhcCC-CHHHHHHHHHHHH
Q 004806 567 SGAIGPLVDLLGNG-TPRGKKDAATALF 593 (729)
Q Consensus 567 ~g~I~~Lv~LL~~~-~~~v~~~Al~aL~ 593 (729)
..+++.|.+++.+. +..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 56899999999876 4566888888874
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.055 Score=61.23 Aligned_cols=252 Identities=19% Similarity=0.140 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc----
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN---- 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~---- 518 (729)
....+.|-..|++-...++.++++.+..|+..+. -..+. ..+|..|-.+|.+.....+-.|+++|..|+....
T Consensus 263 ~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 263 LQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence 3566677777777667889999999999887541 11111 2467788889999999999999999999986321
Q ss_pred -----cHHHHHhcC---CHHHHHHHhcCCCHHHHHHHHHHHHHhccC--cchhhhhhcc-------------CcHHHHHH
Q 004806 519 -----NKSAIANAN---AIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRS-------------GAIGPLVD 575 (729)
Q Consensus 519 -----~k~~I~~~g---~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~I~~~-------------g~I~~Lv~ 575 (729)
.-..|-+.+ ..-.+..+|+.|+.+....-+..+-+...+ +..|..+++. ..+.-|..
T Consensus 340 vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~ 419 (898)
T COG5240 340 VCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGS 419 (898)
T ss_pred ecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 122222221 233455667776655444434433333221 1122211110 01111111
Q ss_pred h-hcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHH-------HHh
Q 004806 576 L-LGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVA-------IGQ 647 (729)
Q Consensus 576 L-L~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~-------i~~ 647 (729)
. ++.|.-+.++.++.+ +.++++..+...+.|+..|+..-..-+..+. +.+
T Consensus 420 ~L~~eGg~eFK~~~Vda----------------------isd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~ 477 (898)
T COG5240 420 SLLQEGGLEFKKYMVDA----------------------ISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGR 477 (898)
T ss_pred HHHhcccchHHHHHHHH----------------------HHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcc
Confidence 1 112233333333333 3334433334444444444333221111110 011
Q ss_pred CC--------cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 648 EN--------GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 648 ~g--------~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
+| .+..+...+--.+.-++..|+.+|...+.+-. ..+..+.+...|.+.+...++.+|..|.-+|+.|+
T Consensus 478 EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 478 EGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 11 24555555545677788889999977766543 23334445667778888889999999999999998
Q ss_pred cCc
Q 004806 720 NQR 722 (729)
Q Consensus 720 ~~~ 722 (729)
..+
T Consensus 555 ~~d 557 (898)
T COG5240 555 LSD 557 (898)
T ss_pred hhh
Confidence 643
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.012 Score=62.26 Aligned_cols=225 Identities=14% Similarity=0.134 Sum_probs=156.4
Q ss_pred HHcCCCHHHHHHHHHHHHHhhcCCccHHHHH-hcCCHHHHHHHhcC--CCHHHHHHHHHHHHHhccCcchhhhhhcc-Cc
Q 004806 494 MLHSSETKIQENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQT--GSPEARENAAATLFSLSVIEDNKIKIGRS-GA 569 (729)
Q Consensus 494 LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~-~~g~I~~Lv~lL~s--~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~-g~ 569 (729)
+++.-++-++..|+.+|.++...++.|..+- +..+-..++.+++. |...++.+++-++|-|+........|-.. ..
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333355578889999999988877776654 44566678888876 45889999999999998877766444332 67
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHhccc-Cc-HHHHHHHHcCcHHHHHHhc-C---CCHHHHHHHH---HHH----HHH
Q 004806 570 IGPLVDLLGNG-TPRGKKDAATALFNLSI-YH-ENKARIVQAGAVKHLVDLM-D---PAAGMVDKAV---AVL----ANL 635 (729)
Q Consensus 570 I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~-~~-en~~~lv~~G~V~~Lv~LL-~---~~~~v~e~Al---~~L----~nL 635 (729)
|..|+.+.+.. ...+.+.++.++.|++. .+ .....+.-.|-+..-+++| + .+.+++...- ..| ..|
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 88888888875 56788899999999987 32 3344455555444555554 2 3333332111 111 111
Q ss_pred hCC---------------c---------chHHHHHhCC--cHHHHHHHHccCCHH-HHHHHHHHHHHHhhCCHhhHHHHH
Q 004806 636 ATI---------------P---------DGRVAIGQEN--GIPVLVEVVELGSAR-GKENAAAALLQLCTNSSRFCSMVL 688 (729)
Q Consensus 636 a~~---------------~---------e~r~~i~~~g--~I~~Lv~lL~s~s~~-~ke~A~~aL~nL~~~~~~~~~~vl 688 (729)
|.. + .+...+.+.+ .+..|.++++...+. ....|+.-+.++.+..|+....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 111 1 1223444433 478888999876555 445678888999999999999999
Q ss_pred hCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 689 QEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 689 ~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
.-|+-+.+..|+...++++|-.|..++..+
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 999999999999999999999999888765
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.1 Score=55.64 Aligned_cols=278 Identities=12% Similarity=0.160 Sum_probs=179.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHH--HHHHcCCCHHHHHHHHHHHHHh-hcCCcc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL--VDMLHSSETKIQENAVTALLNL-SINDNN 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~L--v~LL~s~d~~v~e~Al~aL~nL-s~~~~~ 519 (729)
.+..+.++.++...+.++-..|...|..++.. +..-..|.+....+.+ .++--..+.-++...+..+..+ +.++..
T Consensus 127 aeilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpes 205 (524)
T KOG4413|consen 127 AEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPES 205 (524)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHH
Confidence 56788999999988999999999999999884 4455555554433332 2332233444556666666666 556666
Q ss_pred HHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC--CHHHHHHHHH----HH
Q 004806 520 KSAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAAT----AL 592 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~----aL 592 (729)
....-..|.+..|..=|+- .+.-++.+.......|+..+..+..+.+.|.|..+..++.-. ++--+..++. .+
T Consensus 206 aneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff 285 (524)
T KOG4413|consen 206 ANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF 285 (524)
T ss_pred HhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 6666677888888877765 456678888899999999989999999999999998888643 3333333433 33
Q ss_pred HhcccCcHHHHHHHHc--CcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCc--HHHHHHH-HccCCHHHH
Q 004806 593 FNLSIYHENKARIVQA--GAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENG--IPVLVEV-VELGSARGK 666 (729)
Q Consensus 593 ~nLs~~~en~~~lv~~--G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~--I~~Lv~l-L~s~s~~~k 666 (729)
.++...+-.-+.+++. -+|...+++++ .+..+.+.|+.+|+.|.++.+|...+...|- ...++.- ....-..-+
T Consensus 286 gkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakq 365 (524)
T KOG4413|consen 286 GKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQ 365 (524)
T ss_pred cchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchH
Confidence 3333322112222221 12233333443 5677889999999999999999999988774 4444433 333334556
Q ss_pred HHHHHHHHHHhhCC---Hh----------hHHHHHhC-------CCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 667 ENAAAALLQLCTNS---SR----------FCSMVLQE-------GAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 667 e~A~~aL~nL~~~~---~~----------~~~~vl~~-------G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
+.++.+|.+++..- ++ .+..+... .-...+..+++...++++-.|...+..+..+
T Consensus 366 eaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 366 EAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred HHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence 77788888777532 11 11112111 2344566677888888888888777766554
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0036 Score=53.90 Aligned_cols=85 Identities=29% Similarity=0.435 Sum_probs=68.5
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH
Q 004806 529 IEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ 607 (729)
Q Consensus 529 I~~Lv~lL-~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~ 607 (729)
|+.|++.| +++++.+|..++.+|..+ ....+++.|+.+++++++.++..|+.+|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 67899988 888899999999999844 23367999999999999999999999999982 3
Q ss_pred cCcHHHHHHhcC--CCHHHHHHHHHHHH
Q 004806 608 AGAVKHLVDLMD--PAAGMVDKAVAVLA 633 (729)
Q Consensus 608 ~G~V~~Lv~LL~--~~~~v~e~Al~~L~ 633 (729)
..+++.|.+++. .+..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 448889999883 34455677777764
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.064 Score=61.48 Aligned_cols=268 Identities=15% Similarity=0.162 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHH-HHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN-AVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~-Al~aL~nLs~~~~~k~ 521 (729)
....+.+.+.+.......|..+...+..+.++. .-..+.+.+++..|...+.+.......+ +.-+......+-.
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg--- 207 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG--- 207 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---
Confidence 567788888888888888999999999988864 4455667788999999888765444333 2222211111100
Q ss_pred HHHhcCCHHHHHHHhc---CCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 522 AIANANAIEPLIHVLQ---TGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~---s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
...+...++.+-.+|. +....+|..|..+...+-. .+.+.. ...++.++.-+.....+.+..++..|..+..
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1123344444444443 4456677766655554422 111111 1234444444444477888899999998887
Q ss_pred CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchH------------------------HHHH------
Q 004806 598 YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR------------------------VAIG------ 646 (729)
Q Consensus 598 ~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r------------------------~~i~------ 646 (729)
...-.-...-..+||.|.+.| +....++..+..+|..++..-++- ..+.
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA 363 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence 776666677788999999988 677788887777777775422111 1111
Q ss_pred --hCCcHHHHHHHHcc----CCHHHHHHHHHHHHHHhhCC--HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHH-HH
Q 004806 647 --QENGIPVLVEVVEL----GSARGKENAAAALLQLCTNS--SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL-SY 717 (729)
Q Consensus 647 --~~g~I~~Lv~lL~s----~s~~~ke~A~~aL~nL~~~~--~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL-~~ 717 (729)
++..+..++-+|.. .+...+..++.+++|+|.-- +......+. -.+|.|-..+....|++|..|..+| ..
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 12234555555543 45667788999999999864 322222222 2577777777777899999988888 34
Q ss_pred hhc
Q 004806 718 FRN 720 (729)
Q Consensus 718 L~~ 720 (729)
+++
T Consensus 443 ~e~ 445 (569)
T KOG1242|consen 443 LER 445 (569)
T ss_pred HHH
Confidence 333
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.035 Score=62.74 Aligned_cols=270 Identities=15% Similarity=0.142 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
..+.|+.|-+.+..-++..+...+..|..|-... .+..+.-. ...+-|..+|.++..+++..+=.+|.++-..-.++
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 4678888888888888899999999998876532 34444432 67788899999999998877766666653211111
Q ss_pred HHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHH-HHHHHHH---HHHhc
Q 004806 521 SAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPR-GKKDAAT---ALFNL 595 (729)
Q Consensus 521 ~~I~~-~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~-v~~~Al~---aL~nL 595 (729)
...++ ...++.++.-+.+.++.++..|..-|..............-.|++..++.++.+.... ++..|.. .|..+
T Consensus 243 P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 243 PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKL 322 (675)
T ss_pred ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHH
Confidence 11112 2567888888999999999988777766655444444444457777777777766543 4443332 23344
Q ss_pred ccCcHHHHHHHHc-CcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHH
Q 004806 596 SIYHENKARIVQA-GAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 673 (729)
Q Consensus 596 s~~~en~~~lv~~-G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL 673 (729)
+........ ++. ..+..|.+.+ ++....+-.++..+..|-....++-........+.|+.-|...++.+...+...|
T Consensus 323 ~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 323 VSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred Hhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 443333333 343 3566677777 4556677788888888877777776666777889999999999999999999999
Q ss_pred HHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 674 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 674 ~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
.++|...... .. -..+..|+++...++--....+.-+++.|
T Consensus 402 a~i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 402 ASICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred HHHhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 9999876431 00 11233444444444443444444444443
|
|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00036 Score=72.60 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=43.5
Q ss_pred cccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 142 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 142 ~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
.|+||+.-|.-||.++|+|.||.-||+--...+..+||+||.++++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 49999999999999999999999999998777777899999999875
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0026 Score=65.32 Aligned_cols=182 Identities=16% Similarity=0.084 Sum_probs=112.7
Q ss_pred cCCCHHHHHHHHHHHHHhccCc---chhhhhhcc--CcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcH
Q 004806 537 QTGSPEARENAAATLFSLSVIE---DNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 611 (729)
Q Consensus 537 ~s~~~e~r~~Aa~aL~nLS~~~---e~k~~I~~~--g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V 611 (729)
.+.+.+.+..|+..|..+.... .....+... ..+..++..+.+....+.+.|+.+|..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567888999998888887643 222333221 45566777777777888999999999987643332222345577
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH---hhHH-H
Q 004806 612 KHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS---RFCS-M 686 (729)
Q Consensus 612 ~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~---~~~~-~ 686 (729)
+.|++.+ +....+.+.|..+|..++..-..-..+ .++.+...+.+.++.++..++..|..+....+ .... .
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 8888888 456677888999999998854411111 14566667788999999999999988876654 1111 1
Q ss_pred HHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 687 VLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 687 vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
..-...++.|..++.+.++.+|+.|..++..|....
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 111336788899999999999999999998886543
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0069 Score=69.27 Aligned_cols=212 Identities=19% Similarity=0.175 Sum_probs=129.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc---c----h
Q 004806 488 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE---D----N 560 (729)
Q Consensus 488 I~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~---e----~ 560 (729)
..-|+.+..+.|..++..|+.+|+.|+..-.- ..-.....++++++....+|..|+.+++-++.-. . .
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-----~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL-----SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccc-----cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 33477777888889999999998888642111 1123556778888888889999988877665311 1 1
Q ss_pred hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-cHHH-------------------------------------
Q 004806 561 KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENK------------------------------------- 602 (729)
Q Consensus 561 k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~en~------------------------------------- 602 (729)
...+. ..++..+...+++....++..|+.+|..+-.- .+..
T Consensus 275 e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 275 EEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 11111 25666677777777766666666666655321 1111
Q ss_pred -------------HHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHH
Q 004806 603 -------------ARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKEN 668 (729)
Q Consensus 603 -------------~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~ 668 (729)
..++..|+..+++.-|+ +--+++..|+..+..|+.+..+= ...++..|+.++...-..++..
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfNDE~~~VRL~ 429 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMFNDEIEVVRLK 429 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccHHHHHHHH
Confidence 12233444555555553 33567889999999998854331 1124778899999888999999
Q ss_pred HHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHH
Q 004806 669 AAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715 (729)
Q Consensus 669 A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL 715 (729)
|+.+|..++.+- .+++..++.++..+......+|+....+|
T Consensus 430 ai~aL~~Is~~l------~i~eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 430 AIFALTMISVHL------AIREEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred HHHHHHHHHHHh------eecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999888762 12222344444444444444444444333
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.067 Score=61.32 Aligned_cols=223 Identities=17% Similarity=0.155 Sum_probs=147.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
..++..|+..+...+..+|+....+|..+..... .....-+.+.+.+++......-+..|...++-+..+. .-..
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~----~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~ 169 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSK----GLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIES 169 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhh----ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhh
Confidence 4678999999999999999999999987765321 1112245677888888777777888888887775432 2334
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc---CCCHHHHHHHHHHHHhcccCc
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---NGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~---~~~~~v~~~Al~aL~nLs~~~ 599 (729)
+.+.+.+..|...+.......+..++..-+.... .+-....+...++.+-.+|. +....++..|..+...+..
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~--~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~-- 245 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQ--GNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR-- 245 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHH--HhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH--
Confidence 4566788888888876654433332211111100 00012223345555555444 4466777766665554422
Q ss_pred HHHHHHHHcCcHHHHHH-----hcCCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 004806 600 ENKARIVQAGAVKHLVD-----LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~-----LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~ 674 (729)
.+...+|+.++. +++..+.....++.+|..|+.+...+-...-...+|.|.+.|-...+++++.+..+|.
T Consensus 246 -----~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~ 320 (569)
T KOG1242|consen 246 -----CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLL 320 (569)
T ss_pred -----hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHH
Confidence 122333333332 3344566678899999999999998888888899999999999999999999999999
Q ss_pred HHhhC
Q 004806 675 QLCTN 679 (729)
Q Consensus 675 nL~~~ 679 (729)
.++.-
T Consensus 321 ~~~sv 325 (569)
T KOG1242|consen 321 KFGSV 325 (569)
T ss_pred HHHHh
Confidence 99864
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.08 Score=61.86 Aligned_cols=270 Identities=13% Similarity=0.087 Sum_probs=173.1
Q ss_pred HHHHHHHHHHhcCCCHH-HHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcC--CCHHHHHHHHHHHHHhhc---
Q 004806 443 ETQVRKLVEDLKSTSLD-TQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS--SETKIQENAVTALLNLSI--- 515 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~e-vq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs~--- 515 (729)
.+++..|+...-.+.+. ++..++..|..+|.+-. -....... .++..++.=... .+..++..|+.+|.|-..
T Consensus 128 p~li~~lv~nv~~~~~~~~k~~slealGyice~i~-pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 128 PELIVTLVSNVGEEQASMVKESSLEALGYICEDID-PEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCC-HHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence 67888888888765544 67788999999988632 22333222 444555544333 467889999999988532
Q ss_pred ----CCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHH
Q 004806 516 ----NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT 590 (729)
Q Consensus 516 ----~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~ 590 (729)
++.+|..| ....++.-.+++.+++..|..+|..+.. +.+.-..-.....+..-+.-+++.++++...|..
T Consensus 207 ~nF~~E~ern~i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiE 281 (859)
T KOG1241|consen 207 ANFNNEMERNYI-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIE 281 (859)
T ss_pred HhhccHhhhcee-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 12223222 3334555567788899999999887754 3333333333445566666777888888888887
Q ss_pred HHHhcccCcH----------------HHHHHH---HcCcHHHHHHhc-C-------CCHHHHHHHHHHHHHHhCCcchHH
Q 004806 591 ALFNLSIYHE----------------NKARIV---QAGAVKHLVDLM-D-------PAAGMVDKAVAVLANLATIPDGRV 643 (729)
Q Consensus 591 aL~nLs~~~e----------------n~~~lv---~~G~V~~Lv~LL-~-------~~~~v~e~Al~~L~nLa~~~e~r~ 643 (729)
.-.++|..+- ....+. -.+++|.|+++| + +++.....|..+|..++.+-+ .
T Consensus 282 FWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~--D 359 (859)
T KOG1241|consen 282 FWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG--D 359 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc--c
Confidence 7777763110 001111 146788999988 1 223444555555555554211 1
Q ss_pred HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 644 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 644 ~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.|+. .+++.+-+-+++++-+.++.|+.++..+..+....+..-+..+++|.++.++.+.+-.+++.+.|.|..+...
T Consensus 360 ~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 360 DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 1111 3344444556778999999999999999888766666666677899999999977778888898888766543
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0033 Score=45.94 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=35.7
Q ss_pred hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 004806 477 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 514 (729)
Q Consensus 477 ~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs 514 (729)
+++..+.+.|+++.|+.+|.+++++++..|+++|.||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 47888999999999999999999999999999999986
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.089 Score=61.12 Aligned_cols=253 Identities=15% Similarity=0.196 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+..++.|++.|..+++.+|..|...|+.||+.++.|.-.+ -|.+..+|.. .+.=+....+....+|+.-+.-
T Consensus 179 lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR- 252 (877)
T KOG1059|consen 179 LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR- 252 (877)
T ss_pred HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch-
Confidence 45678889999999999999999999999999888775544 4777777754 3444566667777777643221
Q ss_pred HHHHhcCCHHHHHHHhcCCC-HHHHHHHHHHHHHh--ccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 004806 521 SAIANANAIEPLIHVLQTGS-PEARENAAATLFSL--SVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~-~e~r~~Aa~aL~nL--S~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs 596 (729)
.....+++|..++.+.. +.+.+.++.++... +.. .++-..+ .-++..|-.++.+.++.++..++.|+..+.
T Consensus 253 ---LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ 327 (877)
T KOG1059|consen 253 ---LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKIL 327 (877)
T ss_pred ---hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence 12356899999998766 55666666665433 221 1221111 234666777778889999999999999887
Q ss_pred cCcH-HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHH
Q 004806 597 IYHE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAAL 673 (729)
Q Consensus 597 ~~~e-n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL 673 (729)
..+. ..+.. -+.++..| +.+..++-.|+.+|.-+..-. +..+| +..|+..+.. .....+..-+.-+
T Consensus 328 ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~eI-----Vk~LM~~~~~ae~t~yrdell~~I 396 (877)
T KOG1059|consen 328 KTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVSKK-NLMEI-----VKTLMKHVEKAEGTNYRDELLTRI 396 (877)
T ss_pred hhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHHH-----HHHHHHHHHhccchhHHHHHHHHH
Confidence 6443 22211 12455666 578889999999998887532 22222 4455554433 2334555556666
Q ss_pred HHHhhCCHhhHHHHHh-CCCHHHHHHhhhC-CCHHHHHHHHHHHHHh
Q 004806 674 LQLCTNSSRFCSMVLQ-EGAVPPLVALSQS-GTPRAKEKAQALLSYF 718 (729)
Q Consensus 674 ~nL~~~~~~~~~~vl~-~G~v~~Lv~Ll~s-g~~rvr~~A~~lL~~L 718 (729)
..+|+.+. -..|.+ +=.+..|+.|.+- |+......|..++...
T Consensus 397 I~iCS~sn--Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~ 441 (877)
T KOG1059|consen 397 ISICSQSN--YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVA 441 (877)
T ss_pred HHHhhhhh--hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHh
Confidence 67776653 123322 2245556665543 3445555555555444
|
|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.00068 Score=78.99 Aligned_cols=47 Identities=26% Similarity=0.584 Sum_probs=41.6
Q ss_pred CCcccccCccccccC-----ceecCCCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 138 PSDFCCPLSLELMTD-----PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 138 p~~f~CpI~~~lm~d-----PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
..+-.|+||.+.|.. |-.++|||.|...|+.+|++.. .+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-QTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-CcCCcchhhh
Confidence 346789999999999 7889999999999999999985 7899999843
|
|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.001 Score=69.20 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=49.1
Q ss_pred ccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 004806 141 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWC 204 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~ 204 (729)
|.|-||.+-|.+||++.|||+||..|-.+.++.+ ..|++|++.... .+-+...|......-.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~vC~~~t~g-~~~~akeL~~~L~~kk 303 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYVCSQQTHG-SFNVAKELLVSLKLKK 303 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccC-Ccceeccccccc-ccchHHHHHHHHHhhh
Confidence 7899999999999999999999999999999876 569999887543 4445555555444433
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.00094 Score=73.79 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=44.2
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHhc----CCCCCCCCCccCCCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL----GLFVCPKTRQTLAHTT 189 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~----~~~~cP~t~~~l~~~~ 189 (729)
.+..|-+|.+.-+||+...|.|+|||.||.+|... .+-+||.|..+|+.+.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 35789999999999999999999999999998763 3467999999888763
|
|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0017 Score=68.59 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=48.6
Q ss_pred CCCcccccCccccccC--ce--ecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc----cHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTD--PV--IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP----NYTVKALIANW 203 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~d--PV--~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p----N~~l~~~I~~~ 203 (729)
-...|.|||++..|.. +. +.+|||+|...+|.+-- ....||+|+.+|+..+++| +..+..+.+.+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~ 182 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERM 182 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCCccHHHHHHHHH
Confidence 3567999999999954 23 24999999999999983 2356999999999988774 23444444444
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0092 Score=53.62 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHH--ccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhC
Q 004806 625 VDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVV--ELGSARGKENAAAALLQLCTNSSRFCSMVLQE 690 (729)
Q Consensus 625 ~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL--~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~ 690 (729)
+...+.+|+|||. ++..+..+.+.|+++.++... ...+|-.+|+|+++|.|||.+++++++.|.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4567889999998 777889999999999999886 44689999999999999999999988888764
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.027 Score=65.91 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN 516 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~ 516 (729)
.+.....|.+.+++.++.++..|+..++++-.. +.......|+++.|-.++.+.++.+..+|+.+|..+...
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 356788999999999999999999999888663 455667789999999999999999999999999998654
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0081 Score=43.85 Aligned_cols=40 Identities=30% Similarity=0.433 Sum_probs=36.1
Q ss_pred CccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 004806 517 DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 556 (729)
Q Consensus 517 ~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~ 556 (729)
++++..+.+.|++++|+.+|.+++.+++..++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3477888999999999999999999999999999999963
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.14 Score=54.50 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHH-HhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCccHHHHHhc-CCHHHH
Q 004806 457 SLDTQREATAELRLLAKHNMDNRMVI-ANCGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAIANA-NAIEPL 532 (729)
Q Consensus 457 ~~evq~~Al~~L~~La~~s~~nr~~I-~~~GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs~~~~~k~~I~~~-g~I~~L 532 (729)
++-.+.-|..++.++... ++.|..+ ++...-..++.+|+. .+.++|.+.+-+++-|+.++.....|-.. ..+..|
T Consensus 162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 334566788888888884 4555544 444455667777765 36789999999999998887655444333 567777
Q ss_pred HHHhcCCC-HHHHHHHHHHHHHhccCcchhhhh---hccCcHHHHHHhhcCC---CHHHHHHHHH---HHH----hccc-
Q 004806 533 IHVLQTGS-PEARENAAATLFSLSVIEDNKIKI---GRSGAIGPLVDLLGNG---TPRGKKDAAT---ALF----NLSI- 597 (729)
Q Consensus 533 v~lL~s~~-~e~r~~Aa~aL~nLS~~~e~k~~I---~~~g~I~~Lv~LL~~~---~~~v~~~Al~---aL~----nLs~- 597 (729)
+.+.+... ..+-.-.++++.|+.. ...|..| +-.|-+.+.+++|..+ +.+++..--. .|. .||.
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 78777654 4466667777778765 2233333 3345566677776543 3333221110 110 1111
Q ss_pred -----------------------CcHHHHHHHH--cCcHHHHHHhcC--CCHHHHHHHHHHHHHHhC-CcchHHHHHhCC
Q 004806 598 -----------------------YHENKARIVQ--AGAVKHLVDLMD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQEN 649 (729)
Q Consensus 598 -----------------------~~en~~~lv~--~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g 649 (729)
.+.|...+.+ ...+..|..++. .......-|+.=+..+.. .++++..+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 1234444544 346777888883 222233445555555554 889999999999
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
+-..+++++.+.+++++..|+.++..+..
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999876543
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.14 Score=58.49 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh--hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCcc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM--DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNN 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~--~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~ 519 (729)
...|..++..|++..++++..|+.....|++--. .....+...|.| |..-|..+.+++.-..+.|++.+.. ..-.
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 5678899999999999999999988888776311 011223333332 4455667788888777777766532 1111
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhc-cCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
+-+--..|.+|.|..+|++....+..+....+..++.......-..+ ...-=.|+++|++.+.+++++|...+.-++.
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 11111257899999999999999999999998888764332211111 1333458888999999999988877777653
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.051 Score=65.21 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=129.6
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHh-cccCcHHHHHHHHcCcHHHHHHhcCC----CHHHHHHHHHHHHHHhC-Ccc
Q 004806 567 SGAIGPLVDLLGNGTPRGKKDAATALFN-LSIYHENKARIVQAGAVKHLVDLMDP----AAGMVDKAVAVLANLAT-IPD 640 (729)
Q Consensus 567 ~g~I~~Lv~LL~~~~~~v~~~Al~aL~n-Ls~~~en~~~lv~~G~V~~Lv~LL~~----~~~v~e~Al~~L~nLa~-~~e 640 (729)
-|.+|.+++||++...+++-.-+.+=.. |+.++..+..+++.++-...+..|++ +.+-+..|+.+|+.++. ..-
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 3999999999999988777655444444 45677788889998887777777754 24567788899999988 778
Q ss_pred hHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 641 GRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 641 ~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
|+.+..+.+.+...++.|..+ .+-.+..++-+|..|-.+.+.++-.=.+.++..+|..++...-++||..|.-+|..|-
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL 670 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh
Confidence 899999999999999999885 6889999999999999998888877788899999999999999999999999998875
Q ss_pred cC
Q 004806 720 NQ 721 (729)
Q Consensus 720 ~~ 721 (729)
..
T Consensus 671 ~~ 672 (1387)
T KOG1517|consen 671 SN 672 (1387)
T ss_pred cc
Confidence 53
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0029 Score=68.40 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=38.9
Q ss_pred ccccCccccccCc--e-ecCCCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 141 FCCPLSLELMTDP--V-IVASGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 141 f~CpI~~~lm~dP--V-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
+.|-||+|-|++= | ++||+|.|=..||..|+......||+|++..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 7999999988753 3 5899999999999999998767799998843
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.13 Score=60.57 Aligned_cols=268 Identities=18% Similarity=0.197 Sum_probs=148.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC---------------CCHHHHHHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS---------------SETKIQENAV 507 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s---------------~d~~v~e~Al 507 (729)
+.++....++|.+.+..+...++..+..+++.+++.-..+.+ .++-|+..|+. .||.+|...+
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 556666677777777788888889999999988877777665 66666666641 3799999999
Q ss_pred HHHHHhhcCCcc-HHHHHh-------------c-C------CHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhh-hh
Q 004806 508 TALLNLSINDNN-KSAIAN-------------A-N------AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK-IG 565 (729)
Q Consensus 508 ~aL~nLs~~~~~-k~~I~~-------------~-g------~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~-I~ 565 (729)
+.|.-|-.++.. ...+.+ + | +|..+..+ ..+..++..|+.+|...-.+.++... ++
T Consensus 256 rlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYva 333 (866)
T KOG1062|consen 256 RLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVA 333 (866)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeee
Confidence 999888665432 222210 0 0 11111111 12345666677666654443332211 10
Q ss_pred ----------ccCcH----HHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHH
Q 004806 566 ----------RSGAI----GPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVA 630 (729)
Q Consensus 566 ----------~~g~I----~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~ 630 (729)
+..++ ..++++|++.+..+++.|+..++.|... .|...| ++.|+.+| ..+.........
T Consensus 334 Ln~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~~m-----v~eLl~fL~~~d~~~k~~~as 407 (866)
T KOG1062|consen 334 LNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVRVM-----VKELLEFLESSDEDFKADIAS 407 (866)
T ss_pred hhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHHHH-----HHHHHHHHHhccHHHHHHHHH
Confidence 01111 2567788888889999999888887543 333333 34566666 345566655555
Q ss_pred HHHHHhC--CcchH------HHHH-------hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC---------------
Q 004806 631 VLANLAT--IPDGR------VAIG-------QENGIPVLVEVVELGSARGKENAAAALLQLCTNS--------------- 680 (729)
Q Consensus 631 ~L~nLa~--~~e~r------~~i~-------~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~--------------- 680 (729)
-+..++. .++.+ -.+. +..++..++.++.++.+...+.++..|+.-...+
T Consensus 408 ~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~ 487 (866)
T KOG1062|consen 408 KIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVAS 487 (866)
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 5555554 22222 1111 1234666676665553333333333332211111
Q ss_pred ---HhhHHHHH------------hCCCHHHHHHhhhCCC--HHHHHHHHHHHHHhhc
Q 004806 681 ---SRFCSMVL------------QEGAVPPLVALSQSGT--PRAKEKAQALLSYFRN 720 (729)
Q Consensus 681 ---~~~~~~vl------------~~G~v~~Lv~Ll~sg~--~rvr~~A~~lL~~L~~ 720 (729)
+++-+.++ +..++..|..++.+.. ..++..|..+|--|..
T Consensus 488 W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 488 WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 11222222 2346777888877664 5677777766655544
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.056 Score=62.13 Aligned_cols=216 Identities=19% Similarity=0.166 Sum_probs=137.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---C---
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN---D--- 517 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~---~--- 517 (729)
....-|+.+..+.+..++..|+..|..|.....-.+ -.....+.++.+++..++..|+.+++-.+.- +
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccH------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344448888888888899999999888866432211 2345678888888899998887776555421 1
Q ss_pred ccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC----------------------------------------
Q 004806 518 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---------------------------------------- 557 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~---------------------------------------- 557 (729)
.+-..-....++..+++.+++.+..+|..|+.+|..+-..
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 1111111224566677777777766666666655543211
Q ss_pred -----------cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHH
Q 004806 558 -----------EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMV 625 (729)
Q Consensus 558 -----------~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~ 625 (729)
++....|+..|+-..+|.=|.++-.+++++|+..++.|+.+... ....++..|++++ ++...++
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVR 427 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHH
Confidence 01112244445566666666666678999999999999874332 1123567899999 4556777
Q ss_pred HHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 004806 626 DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674 (729)
Q Consensus 626 e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~ 674 (729)
..|+.+|..++.+-. +++.-++.+++.|...+..+++..-..|.
T Consensus 428 L~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 428 LKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 889999998887522 23334667777777777777775444443
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0033 Score=63.63 Aligned_cols=53 Identities=23% Similarity=0.465 Sum_probs=46.9
Q ss_pred CcccccCccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 139 SDFCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
..|.||+|.+.+.+-+ +-+|||.|+..|.++.+..+ ..||+|+.+++.+++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEe
Confidence 5699999999988865 34899999999999999875 67999999999999987
|
|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0046 Score=53.29 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=34.6
Q ss_pred cccccCccccccC-ceec-CCCccccHHHHHHHHhcC--CCCCCCCCccCC
Q 004806 140 DFCCPLSLELMTD-PVIV-ASGQTYERAFIKKWIDLG--LFVCPKTRQTLA 186 (729)
Q Consensus 140 ~f~CpI~~~lm~d-PV~~-~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~ 186 (729)
+-.||.|..-=.| |++. .|||.|-..||.+|+... ...||.||++..
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3445555544334 6554 799999999999999853 467999999864
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.067 Score=51.93 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=98.1
Q ss_pred hhhccCcHHHHHHhhcCCC------HHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC---CCHHHHHHHHHHHH
Q 004806 563 KIGRSGAIGPLVDLLGNGT------PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD---PAAGMVDKAVAVLA 633 (729)
Q Consensus 563 ~I~~~g~I~~Lv~LL~~~~------~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~---~~~~v~e~Al~~L~ 633 (729)
.+...+++..|+.++.++. ......++.++..|....-..+..+....|..++.++. .+..+...|+++|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 4556789999999999876 36777889999999887666777888888889988883 36788899999999
Q ss_pred HHhCCcchH-HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHh
Q 004806 634 NLATIPDGR-VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 682 (729)
Q Consensus 634 nLa~~~e~r-~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~ 682 (729)
++..+.... ..+.++=-++.|+..|+..++..+.+|+..+-.|....++
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999977774 4444555699999999999999999999999888776543
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.034 Score=55.93 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhcccCcHHHHHHHHc----------------CcHHHHHHhc-C------CCHHHHHHHHHHHHHH
Q 004806 579 NGTPRGKKDAATALFNLSIYHENKARIVQA----------------GAVKHLVDLM-D------PAAGMVDKAVAVLANL 635 (729)
Q Consensus 579 ~~~~~v~~~Al~aL~nLs~~~en~~~lv~~----------------G~V~~Lv~LL-~------~~~~v~e~Al~~L~nL 635 (729)
+........++.+|.||+..+..+..+++. ..+..|++++ . ....-.+....+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 334445667888999999988888766652 2556677766 3 1234567899999999
Q ss_pred hCCcchHHHHHhCC--c--HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh--CCCHHHHHHhhh
Q 004806 636 ATIPDGRVAIGQEN--G--IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ--EGAVPPLVALSQ 701 (729)
Q Consensus 636 a~~~e~r~~i~~~g--~--I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~--~G~v~~Lv~Ll~ 701 (729)
+..++||..+.+.. . +..|+-++.+.+..-+.-++.+|.|+|.....+...+-. .+++|.|+.-+.
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999998643 4 778888888888888999999999999987755444433 367777777666
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0024 Score=62.49 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=40.9
Q ss_pred ccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 141 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
|.|-||.+=++.||++.|||.||-.|-.+-++.+ .+|-+|+.....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhcc
Confidence 9999999999999999999999999988888776 569999876543
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.21 Score=59.71 Aligned_cols=233 Identities=14% Similarity=0.110 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHH-HHHHHHHhhcCCccH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN-AVTALLNLSINDNNK 520 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~-Al~aL~nLs~~~~~k 520 (729)
...++..|++.|...+.++|..|.++|.-|+..-++.+.. -.+.-|..-+-++-...+.- ++.....++.-+...
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcc
Confidence 4678999999999999999999999999988643322211 12333433322222332222 222222222212222
Q ss_pred HHHHhcCCHHHHHHHhcCC-----C-HHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 521 SAIANANAIEPLIHVLQTG-----S-PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~-----~-~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
.......+++.+...|... + ..++..++..|..+-. ....-.. ...+.+..++.-|.+....+++.|+.+|.
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~ 199 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALG 199 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence 2222334444444444322 2 3366666666554322 1111111 22355666666677778889999999999
Q ss_pred hcccCcHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHH---ccCCHHHHHH
Q 004806 594 NLSIYHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV---ELGSARGKEN 668 (729)
Q Consensus 594 nLs~~~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL---~s~s~~~ke~ 668 (729)
.|+..-. ..+-.+++..|++-|. .....+.--+.+|+.+|.....|-----...++.+..+. +..+++.+|.
T Consensus 200 ~la~~~~---~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~ 276 (1233)
T KOG1824|consen 200 HLASSCN---RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREY 276 (1233)
T ss_pred HHHHhcC---HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHH
Confidence 9976322 1233446666777663 233344445566666665433332222234588888888 6678999999
Q ss_pred HHHHHHHHhhCCHh
Q 004806 669 AAAALLQLCTNSSR 682 (729)
Q Consensus 669 A~~aL~nL~~~~~~ 682 (729)
++.+|-.+....+.
T Consensus 277 ~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 277 CLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHHHHHhChh
Confidence 99998887776653
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.092 Score=62.94 Aligned_cols=138 Identities=16% Similarity=0.165 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhcc-Ccchhhhhhcc----CcHHHHHHhhcC-CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHH
Q 004806 543 ARENAAATLFSLSV-IEDNKIKIGRS----GAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD 616 (729)
Q Consensus 543 ~r~~Aa~aL~nLS~-~~e~k~~I~~~----g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~ 616 (729)
-.+.++.+|.||.. +++....++.. |.++.+..+|+. +++++++.|+..+.-++.+.+....++..|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 34567788888865 56555544432 788888888875 4789999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCC
Q 004806 617 LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 617 LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL-~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
+|.+-+..++.++.+|..|+++.+-..+..+.|++.-+..++ .+.++..+..|+..|..|.+..
T Consensus 1821 lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1821 LLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 998888999999999999999888776677777766666665 5678899999999999988753
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.84 Score=56.14 Aligned_cols=219 Identities=17% Similarity=0.191 Sum_probs=129.4
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCccHHHHHhc--CCHHHHHHHhcCCCHHHHHHHHHHHHHhccC--cchhhhhhccCcHH
Q 004806 496 HSSETKIQENAVTALLNLSINDNNKSAIANA--NAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIG 571 (729)
Q Consensus 496 ~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~--g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~I~~~g~I~ 571 (729)
++.+..+|..+..+|..++..+......... .....|..-+++.....+...+.+|..|-.. .+....+ ...|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 4457889999999999987664443333221 1222333344444445566666666555331 1222222 24556
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcC------cHHHHHHhc-----CCCHHHHHHHHHHHHHHhC-Cc
Q 004806 572 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG------AVKHLVDLM-----DPAAGMVDKAVAVLANLAT-IP 639 (729)
Q Consensus 572 ~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G------~V~~Lv~LL-----~~~~~v~e~Al~~L~nLa~-~~ 639 (729)
.++-.++..+...++.|..+|..|+. .....+.| .|...+.++ .....++...+-++..+.. ..
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 65555678889999999999998873 11122222 333333333 1122222221333333332 11
Q ss_pred chHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 640 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 640 e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
..-....-.+.+..+..+|.+.++.+...|+..+..++...++.+-.-..+-.++.+..+++..+..+|.+...+|..|-
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 11111111234566666778899999999999999999988864444444458999999999999999999998887775
Q ss_pred c
Q 004806 720 N 720 (729)
Q Consensus 720 ~ 720 (729)
+
T Consensus 898 r 898 (1176)
T KOG1248|consen 898 R 898 (1176)
T ss_pred H
Confidence 4
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.36 Score=56.41 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhh--HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-c
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDN--RMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN-N 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~n--r~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~-~ 519 (729)
...+..++..|++.++.++.+|+..+..++.--... -..+...|.| |..-|..+.+++.-..+.+|..+...-. .
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 456778888899999999999999999888742111 1233344443 5677778889887666666655531100 0
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
+..---.+.+|.|.-+|++.+..++++....+..++.. ++.-..=-....-=.|+++|+..+..++++|..++..++.
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 00001247789999999999999999999999988763 2311111111333457888888899999988887777653
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0043 Score=62.82 Aligned_cols=37 Identities=35% Similarity=0.598 Sum_probs=33.5
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhc
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL 173 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~ 173 (729)
|-+.=+|.+|++.++|||+.+.||.|||.||.+++..
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 5556689999999999999999999999999999864
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.17 Score=59.59 Aligned_cols=241 Identities=15% Similarity=0.166 Sum_probs=159.9
Q ss_pred ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH-HhhcCCccHHHHHhcCCHHHHHHHhcCCC-HHHHHHHHHHHH
Q 004806 475 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALL-NLSINDNNKSAIANANAIEPLIHVLQTGS-PEARENAAATLF 552 (729)
Q Consensus 475 s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~-nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~-~e~r~~Aa~aL~ 552 (729)
...-|...++.|+...|+.+.....+.....+..+|. .+... ..+ ....++++...+.... ---...++.+|.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GER----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 4456667778899999999998877787888888886 22221 110 1134555555554432 123456788999
Q ss_pred HhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHH-HH-cCcHHHHHHhcCC-CHHHHHHH
Q 004806 553 SLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI-VQ-AGAVKHLVDLMDP-AAGMVDKA 628 (729)
Q Consensus 553 nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~l-v~-~G~V~~Lv~LL~~-~~~v~e~A 628 (729)
||+.. +..|..|...-+++.+-.++...++..++.++..+.||...+..-.+. ++ ...++.....++. .......+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 99884 555777877766666667788889999999999999999887765544 44 4455665555542 23333445
Q ss_pred HHHHHHHhCCcchH-H-HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHH
Q 004806 629 VAVLANLATIPDGR-V-AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPR 706 (729)
Q Consensus 629 l~~L~nLa~~~e~r-~-~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~r 706 (729)
++++..++...++. . ...-..+...++.++.+.++.++...+.+.+|+.....+....+.....++.+..+-+-....
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence 56666555533332 2 233345678889999999999999999999997766666666666666666665554444456
Q ss_pred HHHHHHHHHHHhhc
Q 004806 707 AKEKAQALLSYFRN 720 (729)
Q Consensus 707 vr~~A~~lL~~L~~ 720 (729)
.++.|...|...-.
T Consensus 728 ~~~~~~~~l~~a~~ 741 (748)
T KOG4151|consen 728 KREDAAPCLSAAEE 741 (748)
T ss_pred hhhhhhhHHHHHHH
Confidence 66666666655443
|
|
| >KOG2979 consensus Protein involved in DNA repair [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0072 Score=62.04 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=47.1
Q ss_pred cccccCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCCCCcc----CCCCCCcccHHHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPKTRQT----LAHTTLIPNYTVKALIAN 202 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~t~~~----l~~~~l~pN~~l~~~I~~ 202 (729)
+++|||+......||+- .|||.|+|..|+.++... ...||+-+.. +....+.+...|+..|++
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 47999999999999985 799999999999998752 3459997766 223355555555555544
|
|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0059 Score=65.19 Aligned_cols=48 Identities=21% Similarity=0.471 Sum_probs=39.6
Q ss_pred CCcccccCccccccC-c------------eecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 138 PSDFCCPLSLELMTD-P------------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 138 p~~f~CpI~~~lm~d-P------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
-+|=.|-||.+=|-. | =.+||||.+--.|++.|+++. .|||.||.|+-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCccc
Confidence 356789999976433 3 579999999999999999986 68999999953
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.4 Score=56.00 Aligned_cols=241 Identities=13% Similarity=0.103 Sum_probs=152.4
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHHHhcCCHH
Q 004806 452 DLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIE 530 (729)
Q Consensus 452 ~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~k~~I~~~g~I~ 530 (729)
.+++.+...---|+..|..+...+ -. .+.-+-++.||.+.-+-++..|+.+|..+.. .++. -..++|
T Consensus 117 dl~S~n~ye~giAL~GLS~fvTpd-LA------RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~Fp 184 (877)
T KOG1059|consen 117 DLNSSNVYEVGLALSGLSCIVTPD-LA------RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCFP 184 (877)
T ss_pred HhccCccchhhheecccccccCch-hh------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhHH
Confidence 345555444444555555544422 11 2445678899999999999999999988753 2321 125689
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCcHHHHHHHHc
Q 004806 531 PLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKARIVQA 608 (729)
Q Consensus 531 ~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~en~~~lv~~ 608 (729)
.|..-|.++++.++-.|+.+++.|+. ++.+-..+ -|.+.++|... +.=+...-+..+.+|+-...- +..
T Consensus 185 rL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgK 255 (877)
T KOG1059|consen 185 RLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGK 255 (877)
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhh
Confidence 99999999999999999999999997 55554433 46777777643 333444556677777764331 334
Q ss_pred CcHHHHHHhcCCC--HHHHHHHHHHHH--HHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhH
Q 004806 609 GAVKHLVDLMDPA--AGMVDKAVAVLA--NLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 684 (729)
Q Consensus 609 G~V~~Lv~LL~~~--~~v~e~Al~~L~--nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~ 684 (729)
.+++.|.+++... ..+.-.++.++- +|...-....+-++ -+++.|-.++...++..+.-++-++.-+..-.+...
T Consensus 256 KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V 334 (877)
T KOG1059|consen 256 KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV 334 (877)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH
Confidence 5777888888532 223333332221 22221111111111 136677777788899999999999988888776533
Q ss_pred HHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 685 SMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 685 ~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
+.- -..+++.+.+.++.+|-.|..+|.-|.
T Consensus 335 qa~-----kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 335 QAH-----KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHh-----HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 322 345666777777777777877776554
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.41 Score=51.95 Aligned_cols=178 Identities=18% Similarity=0.227 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHh--cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC---cchhhhhhccCcHHHH
Q 004806 499 ETKIQENAVTALLNLSINDNNKSAIAN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIGRSGAIGPL 573 (729)
Q Consensus 499 d~~v~e~Al~aL~nLs~~~~~k~~I~~--~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~---~e~k~~I~~~g~I~~L 573 (729)
....++.|+..|.++.........+.. ...+..+.+.++.|..+-+..|+.++.-|+.. ......+. ....+.|
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~~~L 134 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELKPVL 134 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHH
Confidence 455666667666665433222222222 23567788888888876666777776666553 12233333 3677888
Q ss_pred HHhhcCCC--HHHHHHHHHHHHhccc----CcHHHHHHHHcCcHHHHHH--hcC-----------CCHHHHHHHHHHHHH
Q 004806 574 VDLLGNGT--PRGKKDAATALFNLSI----YHENKARIVQAGAVKHLVD--LMD-----------PAAGMVDKAVAVLAN 634 (729)
Q Consensus 574 v~LL~~~~--~~v~~~Al~aL~nLs~----~~en~~~lv~~G~V~~Lv~--LL~-----------~~~~v~e~Al~~L~n 634 (729)
...+.++. ..++..++.+|.-++. ..+..... ...+..+.. .++ ++..++..|+..++.
T Consensus 135 ~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~l 212 (309)
T PF05004_consen 135 KRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWAL 212 (309)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHH
Confidence 88888763 4555566666665543 11221111 112221111 121 124678889999998
Q ss_pred HhCCcch-HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 635 LATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 635 La~~~e~-r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
|.+.-+. .-.-.-...++.|+.+|.+.+..++..|..+|.-|...
T Consensus 213 Llt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 213 LLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 8874443 21111234689999999999999999998888766543
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG4367 consensus Predicted Zn-finger protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0037 Score=67.62 Aligned_cols=34 Identities=15% Similarity=0.447 Sum_probs=30.3
Q ss_pred CCcccccCccccccCceecCCCccccHHHHHHHH
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWI 171 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~ 171 (729)
.+++.||||+..|+||++++|||+.||.|-..-+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 4789999999999999999999999999976443
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.54 Score=48.55 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCC-----CHHHHHHHHHHHHHhccCcch--hhhhhccCcHHH
Q 004806 500 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDN--KIKIGRSGAIGP 572 (729)
Q Consensus 500 ~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~-----~~e~r~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~ 572 (729)
..-..+|+..|--++.+++.|..+..+..---|-.+|..+ ..-+|..++++|..|..+++. -..+...+++|-
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3344667777766788899999999887666666666543 356899999999999885443 445566799999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH----cCc----HHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchH
Q 004806 573 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ----AGA----VKHLVDLM--DPAAGMVDKAVAVLANLATIPDGR 642 (729)
Q Consensus 573 Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~----~G~----V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r 642 (729)
++..+..|+...+..|..++..+-.++.+-..+.. --+ +..++.-+ .++..+...++.+..+|+.++..|
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999988776654433332 122 22233223 367788889999999999999888
Q ss_pred HHHHh---CCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 643 VAIGQ---ENGIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 643 ~~i~~---~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
.++.. .+.-..-...+...++..+..-...+.|+|.
T Consensus 253 ~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 253 AALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence 88754 1111112222333455555555555555553
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.32 Score=58.24 Aligned_cols=265 Identities=16% Similarity=0.152 Sum_probs=141.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-HhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhc
Q 004806 448 KLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 526 (729)
Q Consensus 448 ~Lv~~L~s~~~evq~~Al~~L~-~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~ 526 (729)
.|++.+.+.+.+.+..|+.-|. .|-+++ .+-..=.+...+..|+++|.+.+.++|..|+.+|+-|+.- .+..-. .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK--vke~~l-e 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK--VKEDQL-E 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh--chHHHH-H
Confidence 7888999988899988887664 333321 1111112346788999999999999999999999988621 111000 0
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHH-HhccCcchhhhhhccCc----HHHHHHhhcC-C-CHHHHHHHHHHHHhccc-C
Q 004806 527 NAIEPLIHVLQTGSPEARENAAATLF-SLSVIEDNKIKIGRSGA----IGPLVDLLGN-G-TPRGKKDAATALFNLSI-Y 598 (729)
Q Consensus 527 g~I~~Lv~lL~s~~~e~r~~Aa~aL~-nLS~~~e~k~~I~~~g~----I~~Lv~LL~~-~-~~~v~~~Al~aL~nLs~-~ 598 (729)
..++.|+.-+-++....+..+.-.|. .++..+..-.......+ .+.|...+.. + ...++-.++..|..+-. .
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 12333333333344444443332222 22222211111111223 3333333322 2 23355555555554321 1
Q ss_pred cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQL 676 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL 676 (729)
..--.. ...+....++.-+ .+...++.+|+.+|+.|+..-.+ ... .+.+..|++-|.. .......--+.+|..+
T Consensus 165 g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~-~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 165 GTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR-DLY--VELIEHLLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred cccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH-HHH--HHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 110000 1233334444444 34567788999999999873221 111 1234444444432 3444555567778888
Q ss_pred hhCCHhhHHHHHhCCCHHHHHHhh---hCCCHHHHHHHHHHHHHhhcC
Q 004806 677 CTNSSRFCSMVLQEGAVPPLVALS---QSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 677 ~~~~~~~~~~vl~~G~v~~Lv~Ll---~sg~~rvr~~A~~lL~~L~~~ 721 (729)
|+..+. +-----...+|.+.... ..++++.|+...+.|..|-..
T Consensus 241 ~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 241 CRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred HHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 876542 11111124678888887 667789999999998887553
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.17 Score=60.21 Aligned_cols=143 Identities=19% Similarity=0.231 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
+....+.+++...+.+.++++-.=..|..+++..+ . .++. ++..+..=|+++++.++-.|++.|..|-..
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~-~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~~~----- 122 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-E-LALL---AVNTIQKDLQDPNEEIRGFALRTLSLLRVK----- 122 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-H-HHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcChH-----
Confidence 45677888888888888888877778888888765 2 2222 467777778899999999999999776321
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
-.-..+++++.+++.++++.+|.+|+-++.++= .-.+....+.|.+..+..++.+.++.+...|+.+|..+..
T Consensus 123 -el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly--~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 123 -ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY--RLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred -HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH--hcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 112346889999999999999999999999873 2334445556899999999999999999999999998854
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.02 Score=45.08 Aligned_cols=55 Identities=27% Similarity=0.161 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 541 PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 541 ~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
+.+|..|+.+|.+++........-....+++.|+.+|++.+..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999886555444445568999999999999999999999999885
|
... |
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.58 Score=48.34 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=109.1
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHhhcCC--ccHHHHHhcCCHHHHHH
Q 004806 462 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----SETKIQENAVTALLNLSIND--NNKSAIANANAIEPLIH 534 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-----~d~~v~e~Al~aL~nLs~~~--~~k~~I~~~g~I~~Lv~ 534 (729)
..|+..|.-++.+ ++.|..+.++-.--.|-.+|.. +.+-++..++.+|+.|..++ +.-..+...++||..++
T Consensus 97 cnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 5678888888885 5788888888766667777743 35678899999999997653 33455667899999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc--------CcHHHH-HHhhcCCCHHHHHHHHHHHHhcccCcHHHHHH
Q 004806 535 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPL-VDLLGNGTPRGKKDAATALFNLSIYHENKARI 605 (729)
Q Consensus 535 lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~--------g~I~~L-v~LL~~~~~~v~~~Al~aL~nLs~~~en~~~l 605 (729)
.+..|+...+.-|+.++-.+-.++..-.-|... ..+..+ ..+.+.++.++.++++++..+|+.++..+..+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL 255 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL 255 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999888877766654433321 233333 34556679999999999999999999877755
Q ss_pred HH
Q 004806 606 VQ 607 (729)
Q Consensus 606 v~ 607 (729)
..
T Consensus 256 ~~ 257 (293)
T KOG3036|consen 256 RS 257 (293)
T ss_pred Hh
Confidence 43
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.26 Score=58.78 Aligned_cols=167 Identities=20% Similarity=0.171 Sum_probs=117.4
Q ss_pred hcCCCHHHHHHHHHHH-HHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHH
Q 004806 453 LKSTSLDTQREATAEL-RLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEP 531 (729)
Q Consensus 453 L~s~~~evq~~Al~~L-~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~ 531 (729)
+.+.+...+..|++.+ +.++.+.. - .-..+-+++...+.|.+++.-.-.-|.+.+........+ ++..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-m------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-M------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-h------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence 5566666777777654 34444332 1 123455666666778888777666666666543322222 3666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcH
Q 004806 532 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAV 611 (729)
Q Consensus 532 Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V 611 (729)
+.+=|.++++.+|..|.++|..|=. +.. ...+++++.+++.++++.+++.|+.|+.+|=. -.+....+.|.+
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~----~el--~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~ 168 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRV----KEL--LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLI 168 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcCh----HHH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHH
Confidence 7778889999999999999887621 111 12568889999999999999999999999843 344556788999
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHhCC
Q 004806 612 KHLVDLM-DPAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 612 ~~Lv~LL-~~~~~v~e~Al~~L~nLa~~ 638 (729)
..+..++ ++++.++..|+.+|..+...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999998 67888889999999887653
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.052 Score=48.86 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc--CCCHHHHHHHHHHHHHhhcC-CccHHHHHhc
Q 004806 461 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLH--SSETKIQENAVTALLNLSIN-DNNKSAIANA 526 (729)
Q Consensus 461 q~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~--s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~ 526 (729)
+...++.|.+|++.++.++..+.+.|+|+.+++.-. ..+|.+++.|+.+|.||+.+ ++|+..|.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 455678899999999999999999999999999764 45899999999999999864 7788777654
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.046 Score=50.49 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS 514 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs 514 (729)
-..++.|++.|. +.++.+..-|+.-|..+++..+..|..+.+.|+-..+..++.++|++|+.+|+.++-.|.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 568999999994 556677778999999999999999999989999999999999999999999999987663
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.01 Score=61.30 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=40.9
Q ss_pred CCcccccCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCCCCccCC
Q 004806 138 PSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPKTRQTLA 186 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~ 186 (729)
-.+-.||+|++--.-|.++ +|||.||.-||..-+.-. ..+||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3567899999999999987 599999999999977643 357999998754
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.029 Score=44.16 Aligned_cols=55 Identities=24% Similarity=0.149 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004806 500 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL 554 (729)
Q Consensus 500 ~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nL 554 (729)
+.++..|+++|.+++........-.....++.|+.+|++.+..+|..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999876655444445567899999999999999999999999875
|
... |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.97 Score=53.23 Aligned_cols=191 Identities=18% Similarity=0.195 Sum_probs=118.8
Q ss_pred hhhHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004806 440 SGIETQVRKLVEDLKST-------SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLN 512 (729)
Q Consensus 440 ~~~~~~V~~Lv~~L~s~-------~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~n 512 (729)
.+...++|.|++.|... +......|-.+|..++.. .+..|+. -++|++-.-++++|..-++.|+.+++.
T Consensus 315 ~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGS 390 (859)
T KOG1241|consen 315 QALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGS 390 (859)
T ss_pred HHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHh
Confidence 34578899999998641 233456677788777763 1222222 233333334567888889999999988
Q ss_pred hhcCCc-cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc----CcHHHHHHhhcCCCHHHHHH
Q 004806 513 LSINDN-NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS----GAIGPLVDLLGNGTPRGKKD 587 (729)
Q Consensus 513 Ls~~~~-~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~----g~I~~Lv~LL~~~~~~v~~~ 587 (729)
+-..++ .+..-...+++|.++.++.++..-++..++++|..++..-. ..+... ..+..|+.-|. ..|++..+
T Consensus 391 Il~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~gL~-DePrva~N 467 (859)
T KOG1241|consen 391 ILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEGLN-DEPRVASN 467 (859)
T ss_pred hhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHHhh-hCchHHHH
Confidence 876644 44444567899999999998888889999999998876311 222222 33344433333 35788999
Q ss_pred HHHHHHhccc--CcHHHHH----HHH---cCcHHHHHHhcC----CCHHHHHHHHHHHHHHhC
Q 004806 588 AATALFNLSI--YHENKAR----IVQ---AGAVKHLVDLMD----PAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 588 Al~aL~nLs~--~~en~~~----lv~---~G~V~~Lv~LL~----~~~~v~e~Al~~L~nLa~ 637 (729)
++|++.+|+. ....... ... .-.|..|++.-+ ....++..|..+|..|..
T Consensus 468 ~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk 530 (859)
T KOG1241|consen 468 VCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIK 530 (859)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 9999999973 1111111 111 112233333322 235677788888888876
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.1 Score=51.24 Aligned_cols=271 Identities=11% Similarity=0.077 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhccChhhHHHHHhcCcHHH--HHHHHcC-CCHHHHHHHHHHHHH-hhc-
Q 004806 442 IETQVRKLVEDLKSTSL-DTQREATAELRLLAKHNMDNRMVIANCGAINI--LVDMLHS-SETKIQENAVTALLN-LSI- 515 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~-evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~--Lv~LL~s-~d~~v~e~Al~aL~n-Ls~- 515 (729)
..+.+..+++....+.+ ...+.++..+...+.. ..-...+...+.|-. ....++. .+..++..|+.+|.+ |-.
T Consensus 131 wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv 209 (858)
T COG5215 131 WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV 209 (858)
T ss_pred chHHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 36778888888775544 4567888888877763 223344444444322 2334443 467788899999988 321
Q ss_pred -----CCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHH
Q 004806 516 -----NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAA 589 (729)
Q Consensus 516 -----~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al 589 (729)
++.++..+ +...++.-+..+.+++..|..+|..+-. +...-..+.+..........+++.+.++...|+
T Consensus 210 ~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qav 284 (858)
T COG5215 210 QGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAV 284 (858)
T ss_pred HHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 22233332 3334555566778899888888887644 333333444444445556677888888888777
Q ss_pred HHHHhcccCc-----------------HHHHHHHHcCcHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCcchHHH
Q 004806 590 TALFNLSIYH-----------------ENKARIVQAGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVA 644 (729)
Q Consensus 590 ~aL~nLs~~~-----------------en~~~lv~~G~V~~Lv~LL~--------~~~~v~e~Al~~L~nLa~~~e~r~~ 644 (729)
..-..+|... .+-.+..-+.++|.|+.||. ++..+-..|..+|...+.... ..
T Consensus 285 EfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~ 362 (858)
T COG5215 285 EFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DK 362 (858)
T ss_pred HHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hH
Confidence 6554444311 01111222458899999981 123333344444444332110 11
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 645 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 645 i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
|.+. ++..+-.-+++.+...++.|+.++..+..+..+.+..-+-..++|.|..++.+.+-.++..++|++..+..+
T Consensus 363 i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 363 IMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 1111 233333445678899999999999999988765554444445788898888877778999999988877654
|
|
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.0081 Score=63.44 Aligned_cols=53 Identities=23% Similarity=0.373 Sum_probs=43.2
Q ss_pred CCCcccccCccccccCceecC-CCccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 004806 137 IPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 190 (729)
.|+.=.||+|+.--.+|-++. +|..||-.||-.|..+ ...||+|+.|..-.++
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDHL 350 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHHH
Confidence 355668999998888888775 6999999999999995 4679999988765443
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.64 Score=48.67 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHH-hcCcHHHHHHHH-------cCC--CH---HHHHHHHHHHHHhhcCCccHHHH
Q 004806 457 SLDTQREATAELRLLAKHNMDNRMVIA-NCGAINILVDML-------HSS--ET---KIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 457 ~~evq~~Al~~L~~La~~s~~nr~~I~-~~GaI~~Lv~LL-------~s~--d~---~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
+++.+..|+.+|..--...++---.+- ..|.+..|+.=+ ..+ .+ .-..+|+..|--++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 567788787777654333222222222 348888776532 222 12 22345566665667899999999
Q ss_pred HhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhccCc--chhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcc
Q 004806 524 ANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~-----~e~r~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs 596 (729)
.++...--|..+|+..+ ..+|..+.+++..|...+ +.-..+...+.+|..+..+..|+.-.+..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99986666666665443 458999999999998743 34455667799999999999999999999999999887
Q ss_pred cCcHHHHHHHH--------cCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHh
Q 004806 597 IYHENKARIVQ--------AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ 647 (729)
Q Consensus 597 ~~~en~~~lv~--------~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~ 647 (729)
.++.+-..+.+ ..++..++.-+ +++..+....+.+-..|+.++.+|.++..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77665544432 22333344333 57788889999999999999988888764
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.015 Score=60.76 Aligned_cols=47 Identities=15% Similarity=0.403 Sum_probs=37.7
Q ss_pred ccccCcccccc--Cce-ecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 141 FCCPLSLELMT--DPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 141 f~CpI~~~lm~--dPV-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.-|-||..=|. |-+ ++||.|.|-+.||.+|+..-...||+||.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 46999986542 334 589999999999999998655679999988754
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.086 Score=53.09 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHh----------------cCCHHHHHHHhcCC------CHHHHHHHHHHHHHhcc
Q 004806 499 ETKIQENAVTALLNLSINDNNKSAIAN----------------ANAIEPLIHVLQTG------SPEARENAAATLFSLSV 556 (729)
Q Consensus 499 d~~v~e~Al~aL~nLs~~~~~k~~I~~----------------~g~I~~Lv~lL~s~------~~e~r~~Aa~aL~nLS~ 556 (729)
.......++.+|.||+..+.....+.. ..++..|+..+..| ...-..+.+.+|.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 334556677888888776665554332 23677777777652 23456688999999999
Q ss_pred Ccchhhhhhcc--Cc--HHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcC
Q 004806 557 IEDNKIKIGRS--GA--IGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG 609 (729)
Q Consensus 557 ~~e~k~~I~~~--g~--I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G 609 (729)
.++.|..+.+. +. +..|+.++.+.+.--+.-++.+|.|+|...+....+....
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~ 144 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDD 144 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCch
Confidence 99999999875 44 7788888888877777788889999999888887777643
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.9 Score=51.02 Aligned_cols=259 Identities=20% Similarity=0.227 Sum_probs=149.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Cc----
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN---- 518 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~---- 518 (729)
...+.+=..|++-...+..+|++.+..|...+. |. +. .++..|-.+|.+...-++..|+++|..++.- +.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~-l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RE-LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCH--hh-cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 456666677777777889999999999977543 22 22 3888888999999999999999999999752 21
Q ss_pred -c---HHHHHhc---CCHHHHHHHhcCCCHHHHHHHHHHHHHhcc--Ccchhhhhhc-------------cCcHHHHHHh
Q 004806 519 -N---KSAIANA---NAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGR-------------SGAIGPLVDL 576 (729)
Q Consensus 519 -~---k~~I~~~---g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~--~~e~k~~I~~-------------~g~I~~Lv~L 576 (729)
| -..|-.. -.-..+.-+|+.|.......-...+.+... .+++|..+++ .+.+.-|..+
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1 1222222 234456677777765544333333333222 2333332221 1334444444
Q ss_pred hcC-CCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHH
Q 004806 577 LGN-GTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 654 (729)
Q Consensus 577 L~~-~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~L 654 (729)
|+. +.-+.+++.+.++..+.. +++.+.. ++..|...+. +......+..+|..|.. +|-.+.....-+..+
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIE-Dce~~~i~~rILhlLG~--EgP~a~~Pskyir~i 471 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIE-DCEFTQIAVRILHLLGK--EGPKAPNPSKYIRFI 471 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHH-hccchHHHHHHHHHHhc--cCCCCCCcchhhHHH
Confidence 443 334455555555554433 3333332 2233444442 11223344444444432 111111112235555
Q ss_pred HHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 655 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 655 v~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
...+--.+..++..|+.+|..+..+++. ....+.-.|.+.+.+.+..+|+.|.-.|+.+..
T Consensus 472 yNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 472 YNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 5666567788889999999998865542 233345566777778889999999999999984
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.22 Score=48.35 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=95.3
Q ss_pred HHHHHcCcHHHHHHhcCC-C------HHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHH
Q 004806 603 ARIVQAGAVKHLVDLMDP-A------AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG--SARGKENAAAAL 673 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL~~-~------~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~A~~aL 673 (729)
..++..|++..|+++++. . ..+...++.++..|-.+.-.-=.......|..++.++... +..+...|..+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 467889999999999932 2 3566778888888877644222344556788888888653 578899999999
Q ss_pred HHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 674 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 674 ~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
-++..+++.....|.++=-++.|+..++..++.++.+|..++..|-.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999999888899898899999999999999999999998877754
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.8 Score=51.45 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I 523 (729)
.+..|.+.|++.+..++..|+..|.+++... -. .+..|.+.++|++.++.++..|+.++..+-.- ++--.
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~E-ma------rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-- 178 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSPE-MA------RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-- 178 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCHH-Hh------HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH--
Confidence 4556777788888888889999998887631 11 24567788899999999999999888776432 22211
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLS 555 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS 555 (729)
-+++....+|.+.+..+...++..+..|+
T Consensus 179 ---~f~~~~~~lL~ek~hGVL~~~l~l~~e~c 207 (866)
T KOG1062|consen 179 ---HFVIAFRKLLCEKHHGVLIAGLHLITELC 207 (866)
T ss_pred ---HhhHHHHHHHhhcCCceeeeHHHHHHHHH
Confidence 12334444444444444444444444444
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.9 Score=52.39 Aligned_cols=237 Identities=18% Similarity=0.195 Sum_probs=142.3
Q ss_pred HHhcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhc----CCC----HHHHHHHH
Q 004806 482 IANCGAINILVDMLHSS-----ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ----TGS----PEARENAA 548 (729)
Q Consensus 482 I~~~GaI~~Lv~LL~s~-----d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~----s~~----~e~r~~Aa 548 (729)
+.+.|++..|+.+|.+- +..+....+.+|...+.-..||..+.+.|+++.|++.|. .+. .++-+...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 45679999999999752 344555566666656666889999999999999998874 333 45555555
Q ss_pred HHHHHhccCcc---hhhhhh----------ccCcHHHHHHhhcCC----CHHHHHHHHHHHHhcccCcHHHH-HHHHcCc
Q 004806 549 ATLFSLSVIED---NKIKIG----------RSGAIGPLVDLLGNG----TPRGKKDAATALFNLSIYHENKA-RIVQAGA 610 (729)
Q Consensus 549 ~aL~nLS~~~e---~k~~I~----------~~g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~~~en~~-~lv~~G~ 610 (729)
.++..|..... ...... ...-+..|++.+.+. ++.+....+++|-+|+.....+. .+++. .
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F 271 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-F 271 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-H
Confidence 55555533111 111100 112356666666654 67888888999999988655443 33331 1
Q ss_pred HHHHHHhc--CC----CH-HHHHHHHHHHHHHhCCcch---HHHHHhCCcHHHHHHHHccC--------CHH--------
Q 004806 611 VKHLVDLM--DP----AA-GMVDKAVAVLANLATIPDG---RVAIGQENGIPVLVEVVELG--------SAR-------- 664 (729)
Q Consensus 611 V~~Lv~LL--~~----~~-~v~e~Al~~L~nLa~~~e~---r~~i~~~g~I~~Lv~lL~s~--------s~~-------- 664 (729)
...+++= +. +. -..+..+.+..++-.+..| +..+++.|++...+.+|... ++.
T Consensus 272 -~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 -KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred -HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 1111211 11 11 1223333333334333333 78889999999888888542 222
Q ss_pred HHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHhhcC
Q 004806 665 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 665 ~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L~~~ 721 (729)
....+...|.-||.+.... +..+..++++.|..|=+.. ...+-..|-.+|..|+..
T Consensus 351 sLp~iL~lL~GLa~gh~~t-Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPT-QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred cHHHHHHHHHHHHhcCHHH-HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 2344777888888877643 4445667787777766554 345666777777777663
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.5 Score=50.12 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=133.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhc
Q 004806 447 RKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA 526 (729)
Q Consensus 447 ~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~ 526 (729)
..|..+|.+........|+..|..+...... -...+|..|+...+.+.+++.-.---|..-+..+.+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 4577788888888888898877655443322 2345788889899999998877666666666543332211
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHH
Q 004806 527 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARI 605 (729)
Q Consensus 527 g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~l 605 (729)
-|..+-+-|+++++.+|..|+++|..+ |..++..-.+-++-+...+..+.+++.|+.||-.|=. .++.+..+
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 355666778999999999998888876 2222222222333345567789999999999998855 44544433
Q ss_pred HHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 606 VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 606 v~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
+..+-.|| +.+..++-.|+.+...+|- +. -.++. +-...|..+|...+...|-..+..|..-|+
T Consensus 182 -----~e~I~~LLaD~splVvgsAv~AF~evCP--er-ldLIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 182 -----EEVIKKLLADRSPLVVGSAVMAFEEVCP--ER-LDLIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred -----HHHHHHHhcCCCCcchhHHHHHHHHhch--hH-HHHhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 33444556 5566677777777777663 22 22222 225666777766667777776766666654
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.44 E-value=2 Score=50.33 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHHhhcCCcc
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--TKIQENAVTALLNLSINDNN 519 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d--~~v~e~Al~aL~nLs~~~~~ 519 (729)
++..+..+-+.|.+.++.-+.-|+.++.++... +.+..+. .-|+ ++|-+.+ .-++..|+-+|+.|-.. +
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~--s 179 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRK--S 179 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhc--C
Confidence 345666667777788888888899999887653 2333332 2333 5665543 44666777777666432 1
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV 556 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~ 556 (729)
-..+--.+....++++|.+.+..+...+...+..|+.
T Consensus 180 pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 180 PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHH
Confidence 1122223567788888887776666666666666654
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.5 Score=49.44 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=117.9
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCC--ccHHHHHhcCCHHHHHH
Q 004806 462 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIND--NNKSAIANANAIEPLIH 534 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d-----~~v~e~Al~aL~nLs~~~--~~k~~I~~~g~I~~Lv~ 534 (729)
..|+..|..+|. +++.|..+.++...-.|..+|+..+ +.++..++.+++.|...+ +.-..+...+.+|..++
T Consensus 68 cnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 68 CNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 467778888888 5689999999999888999986542 557788889998887643 34555667899999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc--------CcHHHHHH-hhcCCCHHHHHHHHHHHHhcccCcHHHHHH
Q 004806 535 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPLVD-LLGNGTPRGKKDAATALFNLSIYHENKARI 605 (729)
Q Consensus 535 lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~--------g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~~~en~~~l 605 (729)
.+..|+.-.|..|.-++..+-.++..-..+... .++..++. +.+.+++++.+..+++-..|+.++..+..+
T Consensus 147 ~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL 226 (262)
T PF04078_consen 147 IMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREAL 226 (262)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999998888887766654444332 34444443 445779999999999999999999988877
Q ss_pred HHcCcHHHHHH------hcCCCHHHHHHHHHHHHHH
Q 004806 606 VQAGAVKHLVD------LMDPAAGMVDKAVAVLANL 635 (729)
Q Consensus 606 v~~G~V~~Lv~------LL~~~~~v~e~Al~~L~nL 635 (729)
.. .+|..+. ++..+..+...-...+.|+
T Consensus 227 ~~--~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 227 RQ--CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HH--HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HH--hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 64 2222111 2234555555444555554
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=94.20 E-value=1.6 Score=47.40 Aligned_cols=183 Identities=18% Similarity=0.139 Sum_probs=97.8
Q ss_pred hcCCCHHHHHHHHHHHHHhccCcchhhhhhc--cCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC---cHHHHHHHHcCc
Q 004806 536 LQTGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY---HENKARIVQAGA 610 (729)
Q Consensus 536 L~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~---~en~~~lv~~G~ 610 (729)
|.......|+.++..|..+.........+.. .-.+..+...++.+..+-+..|+.++.-|+.. ......+.+ .+
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~ 130 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-EL 130 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HH
Confidence 3334455666666666655432222222222 14577788888888776666777777666553 233333333 46
Q ss_pred HHHHHHhc-CC--CHHHHHHHHHHHHHHhCC-cchHHHHHh-CCcHHHHHH--HHcc----------CCHHHHHHHHHHH
Q 004806 611 VKHLVDLM-DP--AAGMVDKAVAVLANLATI-PDGRVAIGQ-ENGIPVLVE--VVEL----------GSARGKENAAAAL 673 (729)
Q Consensus 611 V~~Lv~LL-~~--~~~v~e~Al~~L~nLa~~-~e~r~~i~~-~g~I~~Lv~--lL~s----------~s~~~ke~A~~aL 673 (729)
.+.|..++ +. ....+..++.+|+.++.. ...-..+.+ ...+..+.. .+.. .++.+...|+.+-
T Consensus 131 ~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 131 KPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 77888877 32 233444555555555441 111111110 011221111 1221 1234555555554
Q ss_pred HHHhhCCHh-hHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 674 LQLCTNSSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 674 ~nL~~~~~~-~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
.-|...-+. .....+ ...++.|..+|++.+..+|..|.+.|.+|-.
T Consensus 211 ~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 444433332 222322 3369999999999999999999998888754
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.28 Score=43.85 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=55.4
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh--CCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 649 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ--EGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 649 g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~--~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
..++.++..+...+.+++..|+.+|.|++..... .++. ..++..|.+++...+++||..|.-+-++|+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~---~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARG---EILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 4688888999999999999999999999987542 3332 347888999999999999988877777665
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.28 Score=57.70 Aligned_cols=243 Identities=20% Similarity=0.243 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
+....+.+++.....+.+.+.-.--.|.+.++..+.- ..+++..++.=..+.++.++.-|++.+.-+-...
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~---- 117 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK---- 117 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH----
Confidence 4567888888888888777766666777777765431 2245555555556678988888888776553221
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 601 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en 601 (729)
+......+|.+.++++++.+|..++..+.++ +..+.......|.++.|.+++.+.++.+..+|+.+|..+...+.+
T Consensus 118 --i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 118 --ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred --HHHHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 1123578899999999999998888777665 445566666779999999999999999999999999998764432
Q ss_pred -HHHHHHcCcHHHHHHhcCCCHHHHH-HHHHHHHHHhCCc--chHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 602 -KARIVQAGAVKHLVDLMDPAAGMVD-KAVAVLANLATIP--DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 602 -~~~lv~~G~V~~Lv~LL~~~~~v~e-~Al~~L~nLa~~~--e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
-...+....+..++..+. +..+ .-+.+|.+++... +.+++. ..+..+.-.|.+.+..+.-.++.++.++.
T Consensus 194 ~~~~~l~~~~~~~lL~al~---ec~EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALN---ECTEWGQIFILDCLAEYVPKDSREAE---DICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred CCcccccHHHHHHHHHHHH---HhhhhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 111111112223333331 1111 1233444444411 111111 12344455555566666666666666665
Q ss_pred hCCHhhHHHHHhCCCHHHHHHhhhCCC
Q 004806 678 TNSSRFCSMVLQEGAVPPLVALSQSGT 704 (729)
Q Consensus 678 ~~~~~~~~~vl~~G~v~~Lv~Ll~sg~ 704 (729)
..-.... ..+-...-++|+.++....
T Consensus 268 ~~~~~~~-~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 268 KYLKQVN-ELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHHH-HHHHHHhcccceeeecccc
Confidence 5544322 2222234455555555443
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.97 Score=53.01 Aligned_cols=224 Identities=12% Similarity=0.129 Sum_probs=125.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCCccH---HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc-hhhhhhc
Q 004806 491 LVDMLHSSETKIQENAVTALLNLSINDNNK---SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGR 566 (729)
Q Consensus 491 Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k---~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e-~k~~I~~ 566 (729)
++..|++..+.++.+|+..+..|+.--..+ ..+...|. .|.+-|....+++.-..+.+|..+..... .+..-=.
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 344567778888888888887775321111 12222222 25566777778877777777766654221 2222122
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc-H---HHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCC--c
Q 004806 567 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-E---NKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATI--P 639 (729)
Q Consensus 567 ~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~-e---n~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~--~ 639 (729)
.+.+|.|..+|++...+++.++...+..++... + .|.-| ...--|+++|. .+..++..|...++.++.. +
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP 958 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP 958 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH
Confidence 488999999999999999999999999988632 2 22222 12223555553 4556666666555555431 1
Q ss_pred --------------chH---------HHHHhCC----cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCC
Q 004806 640 --------------DGR---------VAIGQEN----GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGA 692 (729)
Q Consensus 640 --------------e~r---------~~i~~~g----~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~ 692 (729)
+-+ ..+.+.. ++|.|+.=-+.....+|.-.+.+|..+...-.+....-+. -+
T Consensus 959 qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy-av 1037 (1172)
T KOG0213|consen 959 QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY-AV 1037 (1172)
T ss_pred HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH-Hh
Confidence 100 1111211 2344433334455566665555555554433222211111 13
Q ss_pred HHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 693 VPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 693 v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
.|.|-..+...+.--|+-|..++++|.-
T Consensus 1038 ~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1038 TPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred hHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 5556666666777778888888888764
|
|
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.068 Score=56.92 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=43.0
Q ss_pred CCC--CcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 136 PIP--SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 136 ~~p--~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
++| ++=.||||..=--..|..||||.-|..||.+|+.+. ..|-+|+.....
T Consensus 416 ~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv~~ 468 (489)
T KOG4692|consen 416 DLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTVID 468 (489)
T ss_pred CCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEecceeee
Confidence 355 678999999888888999999999999999999875 569999776543
|
|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.023 Score=61.24 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=41.1
Q ss_pred cccCccccccCceecCCCccccHHHHHHHHhcC-CCCCCCCCccCCCC
Q 004806 142 CCPLSLELMTDPVIVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHT 188 (729)
Q Consensus 142 ~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~ 188 (729)
.|-||-+==+|=-+-||||-.|-.|+..|.... +.+||+||..+..+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 599999998998888999999999999999654 78899999877654
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.6 Score=48.46 Aligned_cols=242 Identities=17% Similarity=0.195 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHH-HHHHHHHHHhhcCCc
Q 004806 442 IETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQ-ENAVTALLNLSINDN 518 (729)
Q Consensus 442 ~~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-d~~v~-e~Al~aL~nLs~~~~ 518 (729)
..+.|..+++.|. +....+|+.++-.|..-+. ++..|..+...|.+..++..+... +..+. ..++.++.-++.+..
T Consensus 19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 3567888888888 3355678888888887777 678999999999999999999543 33233 334444444555554
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCH-HHHHHH-HHHHHHhccCcchhhhhhccCcHHHHHHhhc---------CCCHHHHHH
Q 004806 519 NKSAIANANAIEPLIHVLQTGSP-EARENA-AATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---------NGTPRGKKD 587 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~-e~r~~A-a~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~---------~~~~~v~~~ 587 (729)
+-..+...+.+..++++|..... ...... ..-=.+++. + ....+..+..++. .....-+..
T Consensus 98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-------~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~l 169 (361)
T PF07814_consen 98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK-------V-QQKSRSLCKELLSSGSSWKSPKPPELSPQTL 169 (361)
T ss_pred chhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhH-------H-HHHHHHHHHHHHhccccccccCCcccccccH
Confidence 55555556677777888871100 000000 000000000 0 0111111222221 111223444
Q ss_pred HHHHHHhccc---------------CcHHHHHHHHcCcHHHHHHhcC----C-------------CHHHHHHHHHHHHHH
Q 004806 588 AATALFNLSI---------------YHENKARIVQAGAVKHLVDLMD----P-------------AAGMVDKAVAVLANL 635 (729)
Q Consensus 588 Al~aL~nLs~---------------~~en~~~lv~~G~V~~Lv~LL~----~-------------~~~v~e~Al~~L~nL 635 (729)
|+.+|..++. .+--+..+...|++..+++++. . .....+.++.+|.+.
T Consensus 170 all~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~ 249 (361)
T PF07814_consen 170 ALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESV 249 (361)
T ss_pred HHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 5555555530 1123566777888888888762 1 012456789999998
Q ss_pred hC-CcchHHHHHhC--CcHHHH-HHHHcc---CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCC
Q 004806 636 AT-IPDGRVAIGQE--NGIPVL-VEVVEL---GSARGKENAAAALLQLCTNSSRFCSMVLQEGA 692 (729)
Q Consensus 636 a~-~~e~r~~i~~~--g~I~~L-v~lL~s---~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~ 692 (729)
+. +.+.+..+... +.++.+ ..++.. ........++.+|.|+..+++..+..+...+.
T Consensus 250 T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l 313 (361)
T PF07814_consen 250 TFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL 313 (361)
T ss_pred HhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence 87 44555555432 233333 333322 23344678999999999999877777665433
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.022 Score=62.65 Aligned_cols=43 Identities=26% Similarity=0.566 Sum_probs=36.9
Q ss_pred ccccCccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 141 FCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 141 f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
=.||+|++=|-+-| ++.|.|+|--+|+.+|+.. +||+||--.+
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 37999999999887 3689999999999999975 5999986554
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.045 Score=59.64 Aligned_cols=43 Identities=26% Similarity=0.587 Sum_probs=38.0
Q ss_pred ccccCccccccC---ceecCCCccccHHHHHHHHhcCC--CCCCCCCc
Q 004806 141 FCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGL--FVCPKTRQ 183 (729)
Q Consensus 141 f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~--~~cP~t~~ 183 (729)
|.|||..+--.| |+.+.|||+.+|.+|.+-..+|. ..||.|..
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 689999988776 89999999999999999999886 56999953
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.25 Score=41.75 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchHHHHHhCC
Q 004806 585 KKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQEN 649 (729)
Q Consensus 585 ~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 649 (729)
.+.|++|+.+++..+.....+-+.++|+.++++.. +-..++--|+.+|..++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 57899999999999888888888999999999983 556788889999999999999999887765
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.48 E-value=3.8 Score=47.06 Aligned_cols=257 Identities=14% Similarity=0.080 Sum_probs=140.6
Q ss_pred hhhHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004806 440 SGIETQVRKLVEDLKS-------TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLN 512 (729)
Q Consensus 440 ~~~~~~V~~Lv~~L~s-------~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~n 512 (729)
.+....+|.|+.+|.. ++......|..+|..++.. ....|.+. ++..+-.-+.+++..-++.|+.+++.
T Consensus 317 aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 317 AAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhh
Confidence 4457789999999864 2344677888899888773 22233322 33333344567788888999999988
Q ss_pred hhcCCc--cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC---CHHHHHH
Q 004806 513 LSINDN--NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG---TPRGKKD 587 (729)
Q Consensus 513 Ls~~~~--~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~---~~~v~~~ 587 (729)
+-..+. ....+ -..++|.++....+...-++..+++++..++.+ ....|--.|-++..+.-+..+ .+....+
T Consensus 393 vm~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~--va~~i~p~~Hl~~~vsa~liGl~D~p~~~~n 469 (858)
T COG5215 393 VMHGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADH--VAMIISPCGHLVLEVSASLIGLMDCPFRSIN 469 (858)
T ss_pred hhcCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHH--HHHhcCccccccHHHHHHHhhhhccchHHhh
Confidence 755432 22222 346788888888877777899999999888642 122232335555555444333 5778889
Q ss_pred HHHHHHhcccC-cHHH---HHHHH---cCcHHHHHHhc---CCCHHHHHHHHHHHHHHhC-CcchHHHHHh---------
Q 004806 588 AATALFNLSIY-HENK---ARIVQ---AGAVKHLVDLM---DPAAGMVDKAVAVLANLAT-IPDGRVAIGQ--------- 647 (729)
Q Consensus 588 Al~aL~nLs~~-~en~---~~lv~---~G~V~~Lv~LL---~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~--------- 647 (729)
+.|+..||..+ .+.. ..++. ...+..|+..- ..+...+..+..+|..|.. +++....+..
T Consensus 470 csw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~k 549 (858)
T COG5215 470 CSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKK 549 (858)
T ss_pred hHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 99999998652 1111 11111 11222333321 2344555556666666654 3444333321
Q ss_pred -CCcHHHHHHHHccC----CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCC
Q 004806 648 -ENGIPVLVEVVELG----SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGT 704 (729)
Q Consensus 648 -~g~I~~Lv~lL~s~----s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~ 704 (729)
...+..+-..+... .++++-+-+.+|..+.+..+...+.+-+ -.+..+++++++..
T Consensus 550 l~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~ 610 (858)
T COG5215 550 LDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTK 610 (858)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccC
Confidence 01122222222211 2344555555555555544322222222 14566677777663
|
|
| >KOG3113 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.054 Score=55.35 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=42.8
Q ss_pred CcccccCccccccCce----ecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 139 SDFCCPLSLELMTDPV----IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV----~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
..|.|||++-.|.+=. +-+|||.|.-.++++.-. .+||+|++.+..++.++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika---s~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA---SVCHVCGAAYQEDDVIV 164 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhhh---ccccccCCcccccCeEe
Confidence 4699999999999875 458999999999888763 46999999999887654
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.33 E-value=7.6 Score=40.80 Aligned_cols=196 Identities=20% Similarity=0.204 Sum_probs=119.6
Q ss_pred hcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh
Q 004806 484 NCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK 561 (729)
Q Consensus 484 ~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k 561 (729)
...+++.|+..|... .+-++..|..+|.++. .+ ..++.+-+..+.+..++++....+|..+-..+...
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 347899999988764 5667889999998875 22 33445555555566667776666666553211110
Q ss_pred h------hh-------hccCcHHHHHHhhcCCCH-HH-HHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC-CCHHHH
Q 004806 562 I------KI-------GRSGAIGPLVDLLGNGTP-RG-KKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD-PAAGMV 625 (729)
Q Consensus 562 ~------~I-------~~~g~I~~Lv~LL~~~~~-~v-~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~-~~~~v~ 625 (729)
. .+ ...+-+..|-..|.+.+. .. +..|...|.|+-. ..+|..|++-+. ++.-.+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHH
Confidence 0 00 011234445444444322 22 2344445555411 124445555553 344456
Q ss_pred HHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC
Q 004806 626 DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 703 (729)
Q Consensus 626 e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg 703 (729)
..+..+|+.|-+ .-.|+.|.+.|.. ..+.++..|+.+|..++... .++.|.+.+...
T Consensus 205 hEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~e~~~D~ 263 (289)
T KOG0567|consen 205 HEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLKEYLGDE 263 (289)
T ss_pred HHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHHHHcCCc
Confidence 677778877653 2358889888864 68899999999999877542 477788888888
Q ss_pred CHHHHHHHHHHHHHhhc
Q 004806 704 TPRAKEKAQALLSYFRN 720 (729)
Q Consensus 704 ~~rvr~~A~~lL~~L~~ 720 (729)
.+-+++.+.-.|.++..
T Consensus 264 ~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 264 ERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887777776643
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.042 Score=59.70 Aligned_cols=61 Identities=20% Similarity=0.476 Sum_probs=49.1
Q ss_pred ccccCccccccCce-----ecCCCccccHHHHHHHHhcC-CCCCCCCCccCCCCCCcccHHHHHHHH
Q 004806 141 FCCPLSLELMTDPV-----IVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 201 (729)
Q Consensus 141 f~CpI~~~lm~dPV-----~~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN~~l~~~I~ 201 (729)
-.||||++-..=|+ ++.|||-|--.||++|+-+. ...||.|.-.-+..++.|-+.+|...+
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~ 71 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAM 71 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHH
Confidence 57999999888885 57899999999999999532 234999988888888998887765443
|
|
| >PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.092 Score=40.95 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=25.3
Q ss_pred ccccCccccccCceec-CCCcc--ccHHHHHHHHh-cCCCCCCCCCcc
Q 004806 141 FCCPLSLELMTDPVIV-ASGQT--YERAFIKKWID-LGLFVCPKTRQT 184 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~-~~G~t--y~r~~I~~~~~-~~~~~cP~t~~~ 184 (729)
+.|||+...|+-||.. .|.|. ||-....+... .+.-.||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 7899999999999974 68765 88755555444 444569999874
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.11 E-value=4 Score=50.51 Aligned_cols=217 Identities=18% Similarity=0.226 Sum_probs=119.9
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-C-ccHHHHHhcCCHH
Q 004806 455 STSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLHSSETKIQENAVTALLNLSIN-D-NNKSAIANANAIE 530 (729)
Q Consensus 455 s~~~evq~~Al~~L~~La~~s~~nr~~I~~~--GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~-~~k~~I~~~g~I~ 530 (729)
+.+..+|..+-+.|..+... +.......+. .....|..-+++...-++..++.+|..|-.. + +....+. ..|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHH
Confidence 44778999999999988875 3333332221 2333444444555666777778777666322 2 2222221 2355
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcc----CcchhhhhhccCcHHHHHHhhcCC--CHHHHHHH--HHHHHhcccCcHHH
Q 004806 531 PLIHVLQTGSPEARENAAATLFSLSV----IEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDA--ATALFNLSIYHENK 602 (729)
Q Consensus 531 ~Lv~lL~s~~~e~r~~Aa~aL~nLS~----~~e~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~A--l~aL~nLs~~~en~ 602 (729)
-++-.++.-+...+.+|..+|..|.. .+..... ....|...+..+..+ .......| +.++..+.. ..
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---EF 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---HH
Confidence 55555577778899999999998873 1111111 112455555555443 22222222 333333322 12
Q ss_pred HHHHHcCcHHHHHH----hc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 004806 603 ARIVQAGAVKHLVD----LM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~----LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL 676 (729)
..+.+.+.++.+++ .| .....++..|++.+..++. .++..-.-.....++.+..++.......+...-..|-.|
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 22333334444444 44 4678899999999999887 444433333344677777777766666666555555555
Q ss_pred hhC
Q 004806 677 CTN 679 (729)
Q Consensus 677 ~~~ 679 (729)
++.
T Consensus 897 irk 899 (1176)
T KOG1248|consen 897 IRK 899 (1176)
T ss_pred HHH
Confidence 544
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.00 E-value=3.7 Score=48.57 Aligned_cols=133 Identities=17% Similarity=0.242 Sum_probs=75.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcC-----------CCHHHHHHHHHHHHhccc-C
Q 004806 531 PLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN-----------GTPRGKKDAATALFNLSI-Y 598 (729)
Q Consensus 531 ~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~-----------~~~~v~~~Al~aL~nLs~-~ 598 (729)
-++++|.+++.+++..+.....-|+. ..-+..++.+|+. .+...+..-+.+|+..+. +
T Consensus 321 DvLrvLss~dldvr~Ktldi~ldLvs----------srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F 390 (948)
T KOG1058|consen 321 DVLRVLSSPDLDVRSKTLDIALDLVS----------SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF 390 (948)
T ss_pred HHHHHcCcccccHHHHHHHHHHhhhh----------hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC
Confidence 34455566666666666665555543 3445556666542 123446666677777665 4
Q ss_pred cHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQ 675 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~n 675 (729)
++ +.+.+|+.|++.+. .+.......+..+...-. .+.-|. ..+..|++-+.. .+....+.|+|++..
T Consensus 391 p~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~-----~ii~~l~~~~~~irS~ki~rgalwi~Ge 460 (948)
T KOG1058|consen 391 PE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRA-----SIIEKLLETFPQIRSSKICRGALWILGE 460 (948)
T ss_pred hH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHH-----HHHHHHHHhhhhhcccccchhHHHHHHH
Confidence 55 45668889999994 443333333332222211 222232 234555555533 567888899999999
Q ss_pred HhhCCHhh
Q 004806 676 LCTNSSRF 683 (729)
Q Consensus 676 L~~~~~~~ 683 (729)
-|....+.
T Consensus 461 Yce~~~~i 468 (948)
T KOG1058|consen 461 YCEGLSEI 468 (948)
T ss_pred HHhhhHHH
Confidence 98876643
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.98 Score=53.50 Aligned_cols=192 Identities=17% Similarity=0.168 Sum_probs=129.6
Q ss_pred CccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHH-hccCcchhhhhhccCcHHHHHHhhcCCC-HHHHHHHHHHHHh
Q 004806 517 DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFS-LSVIEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFN 594 (729)
Q Consensus 517 ~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~n-LS~~~e~k~~I~~~g~I~~Lv~LL~~~~-~~v~~~Al~aL~n 594 (729)
..-+...+..|+...|+++...+....+.....+|.. ++. +..+. ...++++...+.... -.-.-.++.++.|
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGERS----YEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 3345556778999999999999888888888888872 111 00000 144555555544332 2334578899999
Q ss_pred ccc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHH-h-CCcHHHHHHHHccCCHHHHHHHH
Q 004806 595 LSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIG-Q-ENGIPVLVEVVELGSARGKENAA 670 (729)
Q Consensus 595 Ls~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~-~-~g~I~~Lv~lL~s~s~~~ke~A~ 670 (729)
|+. +...++++++.-.++.+-.++ +++...+..++..+.||..++..-+..+ + ...++.....+..........++
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a 648 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGA 648 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcc
Confidence 987 556677888877777766555 6778888899999999999887654443 3 34677777777666666667777
Q ss_pred HHHHHHhhCCHhhHHHHH-hCCCHHHHHHhhhCCCHHHHHHHHH
Q 004806 671 AALLQLCTNSSRFCSMVL-QEGAVPPLVALSQSGTPRAKEKAQA 713 (729)
Q Consensus 671 ~aL~nL~~~~~~~~~~vl-~~G~v~~Lv~Ll~sg~~rvr~~A~~ 713 (729)
.++..+.......|..+. -......++.+++++.+.++.....
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 777767777666666322 2456777888888877666654443
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.85 E-value=1.1 Score=50.88 Aligned_cols=152 Identities=19% Similarity=0.161 Sum_probs=113.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCH----HHHHHHHHHHHhcccCcHHHHH
Q 004806 529 IEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP----RGKKDAATALFNLSIYHENKAR 604 (729)
Q Consensus 529 I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~----~v~~~Al~aL~nLs~~~en~~~ 604 (729)
...+.+++.+++...+..|...|.+|+.+......++...++..|..++.++.. .+...++.++..|....-..+.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 455778889999999989999999999998888888888899999999998754 5556666666665443323333
Q ss_pred HHHcCcHHHHHHhc---CCCHHHHHHHHHHHHHHhCCcch-HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 605 IVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 605 lv~~G~V~~Lv~LL---~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
.+....|.....+. ..+..+...|+..|.++..+... +..+.++--+..|+..|+..+...+..|...|-.+....
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 34444444444444 23455678899999999987664 566666667999999999999999999888887776554
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.36 Score=43.13 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHH
Q 004806 504 ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPR 583 (729)
Q Consensus 504 e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~ 583 (729)
..++.+|...+..-.....-.-...+++++..+.+.+..+|..|+.+|.|++..........-...+..|.+++.+.++.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 34455555554432222222223578999999999999999999999999986443322222347888899999999988
Q ss_pred HHHHHH
Q 004806 584 GKKDAA 589 (729)
Q Consensus 584 v~~~Al 589 (729)
++..|.
T Consensus 84 Vr~~a~ 89 (97)
T PF12755_consen 84 VRSAAE 89 (97)
T ss_pred HHHHHH
Confidence 877663
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=92.79 E-value=5.2 Score=43.04 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=110.1
Q ss_pred HHHHHHHH-HHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc--CCcc
Q 004806 443 ETQVRKLV-EDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI--NDNN 519 (729)
Q Consensus 443 ~~~V~~Lv-~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~--~~~~ 519 (729)
.+.+..|| ..+++.++.+|..|+.+|+.++--+.+.- ...++.+...+..++..++..|+.+|..+.. +...
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 45666666 67889999999999999999988654221 2347778888877899999999999998853 1111
Q ss_pred HH-------HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcC----CCHHHHHHH
Q 004806 520 KS-------AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN----GTPRGKKDA 588 (729)
Q Consensus 520 k~-------~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~----~~~~v~~~A 588 (729)
.. .......+..+.+.|.+.+++++..|+..++.|-....... ...++..|+-+.-+ .+.+++..-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11 12234567778888999999999999999998754322222 13344444433222 234444444
Q ss_pred HHHHHhcccCcHHHHHHHHcCcHHHHHHhc
Q 004806 589 ATALFNLSIYHENKARIVQAGAVKHLVDLM 618 (729)
Q Consensus 589 l~aL~nLs~~~en~~~lv~~G~V~~Lv~LL 618 (729)
...+-..+..+...+..+....++.+..++
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 445556666665556666677777777766
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=92.78 E-value=4.8 Score=39.85 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCC-HHHHHHH
Q 004806 457 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANA-IEPLIHV 535 (729)
Q Consensus 457 ~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~-I~~Lv~l 535 (729)
++.++..++..+..|+..-+.. + ...++.+...|.++++.++..|+.+|..|...+-.| -.|. +..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 3678889999999998854321 1 245888999999999999999999999996543221 1133 3778888
Q ss_pred hcCCCHHHHHHHHHHHHHhccC
Q 004806 536 LQTGSPEARENAAATLFSLSVI 557 (729)
Q Consensus 536 L~s~~~e~r~~Aa~aL~nLS~~ 557 (729)
|.+.+++++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999988654
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=92.75 E-value=1.2 Score=46.67 Aligned_cols=95 Identities=15% Similarity=0.227 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhh
Q 004806 624 MVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ 701 (729)
Q Consensus 624 v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~ 701 (729)
....|+.+|.-+|- ++..|..+.+..++..|+.+|. ...+.++-.++.+|..+...++.+...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567788887776 9999999999999999999995 467899999999999999999999999999999999999999
Q ss_pred CCC--HHHHHHHHHHHHHh
Q 004806 702 SGT--PRAKEKAQALLSYF 718 (729)
Q Consensus 702 sg~--~rvr~~A~~lL~~L 718 (729)
+.. ..+|-|..+.|-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 864 67888988866544
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.70 E-value=3 Score=51.65 Aligned_cols=107 Identities=19% Similarity=0.207 Sum_probs=67.9
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc----Ccchhh
Q 004806 488 INILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV----IEDNKI 562 (729)
Q Consensus 488 I~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~----~~e~k~ 562 (729)
+..|...++. ...+.+.+|+..|..|+..-..-.. -.-++|-+++++.+....+|..|+.+|..+-. .+..-.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~--LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK--LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH--HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 4444444443 3566778899999888864221111 12468999999999999999999999887643 233344
Q ss_pred hhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcc
Q 004806 563 KIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLS 596 (729)
Q Consensus 563 ~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs 596 (729)
.|.-.=.+|.|-.|+.+. ...++..-+..|..|+
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 455556788888888874 3334433333444443
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=92.63 E-value=2.4 Score=50.96 Aligned_cols=217 Identities=14% Similarity=0.132 Sum_probs=140.8
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhc--cCcHH
Q 004806 496 HSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIG 571 (729)
Q Consensus 496 ~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~--~g~I~ 571 (729)
.+..|.+.-.|.+++...+.. ..+...+ .-.+...+..+. +..+.++..|+++++..+.. ..+.. .+.+.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild 533 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLSLQPMILD 533 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccccchHHHH
Confidence 345666666777776654322 1121111 112333333333 33456787888888776621 11111 37788
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc---CCCHHHHHHHHHHHHHHhCCcchHHHHHhC
Q 004806 572 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRVAIGQE 648 (729)
Q Consensus 572 ~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL---~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~ 648 (729)
.|.++......++...-..+|...+..+.-.....++...|.++.++ ..++-++..+-.++..|+....+..-+ ..
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e 612 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QE 612 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HH
Confidence 88888887788888888888888888777777778888889888887 356667777777777777633332222 23
Q ss_pred CcHHHHHHHHccCC----HHHHHHHHHHHHHHhhCCHh-hHHHHHhCCCHHHHHHh-hhCCCHHHHHHHHHHHHHhhc
Q 004806 649 NGIPVLVEVVELGS----ARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVAL-SQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 649 g~I~~Lv~lL~s~s----~~~ke~A~~aL~nL~~~~~~-~~~~vl~~G~v~~Lv~L-l~sg~~rvr~~A~~lL~~L~~ 720 (729)
..||.|+..|.... .....-|+.+|..+.++.+. .-+.++. -++|++.++ +.+++..+-+.|.++|+.+-.
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 46999999998755 67778888888888877643 2233333 357777775 556678888999999988743
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.61 E-value=1.2 Score=51.39 Aligned_cols=105 Identities=17% Similarity=0.170 Sum_probs=69.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-c---cHHHHH
Q 004806 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND-N---NKSAIA 524 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~-~---~k~~I~ 524 (729)
|.+.|....+++.-..+.++..+.........+=.-.|.+|.|..+|++....++++.+..+..++.+. + .|..+.
T Consensus 651 LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR 730 (975)
T COG5181 651 LYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR 730 (975)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH
Confidence 334444556666555555555444321111001112388999999999999999999999999998753 2 233332
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 004806 525 NANAIEPLIHVLQTGSPEARENAAATLFSLSV 556 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~ 556 (729)
.--.|+..|++.+.++|.+|..++..++.
T Consensus 731 ---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 731 ---ICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 23357888999999999999999888864
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.55 E-value=28 Score=41.35 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=107.2
Q ss_pred HHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhc-CCCHH
Q 004806 464 ATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ-TGSPE 542 (729)
Q Consensus 464 Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~-s~~~e 542 (729)
.+-+.-+|+.+-+.....+. .++..|-.+|.+....++.-|+.-++.|+........+-.. .+.++..|+ ..+..
T Consensus 309 VLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 309 VLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVS 384 (938)
T ss_pred HHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchH
Confidence 44444556655444444444 46788889998888899999999999988776666555544 788899998 66788
Q ss_pred HHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc--Cc------HHHHHH-------HH
Q 004806 543 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--YH------ENKARI-------VQ 607 (729)
Q Consensus 543 ~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~--~~------en~~~l-------v~ 607 (729)
++..|+..|..++.. +|...| +..|+++|.+-+..+++.-+.=+.-|+. .. +..-.+ ++
T Consensus 385 irrravDLLY~mcD~-~Nak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs 458 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDV-SNAKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS 458 (938)
T ss_pred HHHHHHHHHHHHhch-hhHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc
Confidence 999999999988743 344434 4567777777777666654443333332 11 111111 12
Q ss_pred cCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHhCC
Q 004806 608 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQEN 649 (729)
Q Consensus 608 ~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 649 (729)
.++-..++++.-.+.++...|+..+...-..+...+.|++.|
T Consensus 459 deVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvg 500 (938)
T KOG1077|consen 459 DEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVG 500 (938)
T ss_pred HHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 233344444443445566666655554444444445554433
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=92.47 E-value=2 Score=47.04 Aligned_cols=197 Identities=13% Similarity=0.145 Sum_probs=140.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHH-----HHHhc--CcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRM-----VIANC--GAINILVDMLHSSETKIQENAVTALLNLSI 515 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~-----~I~~~--GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~ 515 (729)
.+.+..|+..|..-+-+.+..+......+.+.....+. .+... ..+..|+.-- +++++...+..+|.....
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 46778888888888888898888888888876555543 23221 3344444433 356666777778888877
Q ss_pred CCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Ccchhhhhhcc---CcHHHHHHhhcCCCHHHHHHHHHH
Q 004806 516 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRS---GAIGPLVDLLGNGTPRGKKDAATA 591 (729)
Q Consensus 516 ~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~---g~I~~Lv~LL~~~~~~v~~~Al~a 591 (729)
++.-...+.....+..+...+..++-++-..|..++..|-. +...-...... ..+.....||.+++--+++.++..
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 77777788888888889999999999999999999888644 33333333322 577788899999999999999999
Q ss_pred HHhcccCcHHHHHHHH----cCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch
Q 004806 592 LFNLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 641 (729)
Q Consensus 592 L~nLs~~~en~~~lv~----~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~ 641 (729)
|..|-.++.|...+.. ..-+..++.+| +....++-.|..++.....++..
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 9999998888776554 44667777788 56778889999999988775543
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF14447 Prok-RING_4: Prokaryotic RING finger family 4 | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.062 Score=42.35 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=35.0
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
+..|=.|...=...+++||||..|+.|-.- ++-+.||+|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCCC
Confidence 345667777777899999999999988332 33345999999987643
|
|
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.34 E-value=2.3 Score=51.58 Aligned_cols=252 Identities=15% Similarity=0.195 Sum_probs=153.3
Q ss_pred HHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHHHhcCCHHHHHHHhcCCC---
Q 004806 465 TAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGS--- 540 (729)
Q Consensus 465 l~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~k~~I~~~g~I~~Lv~lL~s~~--- 540 (729)
..+|..+.+.+.+|...+.++.++..++.+|-+ .+-+...+.++.-|.. ++.. +....+-.++..|++|.
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceec
Confidence 456777888899999999999999999888843 3333444455544432 2221 11234556777777642
Q ss_pred ---------HHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcC----------CCHHHHHHHHHHHHhc-----
Q 004806 541 ---------PEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGN----------GTPRGKKDAATALFNL----- 595 (729)
Q Consensus 541 ---------~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~----------~~~~v~~~Al~aL~nL----- 595 (729)
..+....++++|.+.. +...+..+++.+++..|...|.. ++..+...-...|+.+
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 2345556677777654 55667778888888888777641 1222222223333322
Q ss_pred ccCcHHHHHHH-------------HcC---------cHHHHHHhc-C--CCHHHH--HHHHHHHHHHhC------Cc---
Q 004806 596 SIYHENKARIV-------------QAG---------AVKHLVDLM-D--PAAGMV--DKAVAVLANLAT------IP--- 639 (729)
Q Consensus 596 s~~~en~~~lv-------------~~G---------~V~~Lv~LL-~--~~~~v~--e~Al~~L~nLa~------~~--- 639 (729)
|.++.|+.++. ..| +|..|.++- + ....+. ..|+..+-.+-. .+
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 33455554322 233 222222221 0 011111 123332222211 11
Q ss_pred --chHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhh---CCCHHHHHHHHHH
Q 004806 640 --DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ---SGTPRAKEKAQAL 714 (729)
Q Consensus 640 --e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~---sg~~rvr~~A~~l 714 (729)
..++.|...|++..|+..+....++.+-.-...|-.+++.++.+.......|.++.|++++. +|....--.|..+
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkI 976 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKI 976 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHH
Confidence 23677888899999999998889999999999999999999988888888899999998875 4555555566666
Q ss_pred HHHhhcCc
Q 004806 715 LSYFRNQR 722 (729)
Q Consensus 715 L~~L~~~~ 722 (729)
+.+|...+
T Consensus 977 vemLgayr 984 (2799)
T KOG1788|consen 977 VEMLGAYR 984 (2799)
T ss_pred HHHHhhcc
Confidence 66665554
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=92.28 E-value=2.1 Score=46.14 Aligned_cols=168 Identities=15% Similarity=0.177 Sum_probs=110.6
Q ss_pred CcHHHHH-HHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh--h
Q 004806 486 GAINILV-DMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK--I 562 (729)
Q Consensus 486 GaI~~Lv-~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k--~ 562 (729)
+.+.-|+ ..+.+.++.+++.|+.+|+-.+.-+.. + ....++.+...+..++.+++..|+.+|+.+....... .
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---L-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---H-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3444443 677889999999999999888754321 1 1234777888887788999999999999886532211 1
Q ss_pred -------hhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHh-cC----CCHHHHHHHHH
Q 004806 563 -------KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDL-MD----PAAGMVDKAVA 630 (729)
Q Consensus 563 -------~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~L-L~----~~~~v~e~Al~ 630 (729)
.......+..+.+.|.+.++.++..|+..++.|-....... ...++..|+-+ ++ .+..++.--..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 12223677788888888999999999999988765332221 12233333332 33 23445544445
Q ss_pred HHHHHhCCcchHHHHHhCCcHHHHHHHHcc
Q 004806 631 VLANLATIPDGRVAIGQENGIPVLVEVVEL 660 (729)
Q Consensus 631 ~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s 660 (729)
.+-..|......+..+....++.+..+...
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 566777766666677777788888887765
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.25 E-value=25 Score=42.18 Aligned_cols=247 Identities=12% Similarity=0.094 Sum_probs=132.4
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHH
Q 004806 453 LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPL 532 (729)
Q Consensus 453 L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~L 532 (729)
....++.++..|+.+|-.|-.-.++....+ +..+-.||.+.++.|.-.|+.+...++-+ .-..| .+....|
T Consensus 152 ~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLI--Hknyrkl 222 (968)
T KOG1060|consen 152 VTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLI--HKNYRKL 222 (968)
T ss_pred hcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHh--hHHHHHH
Confidence 346688999999999998877666655544 45566678888888888888888777632 11111 2335555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhccCc---c----------------------hhhhhhcc----CcHHHHHHhhcCCCHH
Q 004806 533 IHVLQTGSPEARENAAATLFSLSVIE---D----------------------NKIKIGRS----GAIGPLVDLLGNGTPR 583 (729)
Q Consensus 533 v~lL~s~~~e~r~~Aa~aL~nLS~~~---e----------------------~k~~I~~~----g~I~~Lv~LL~~~~~~ 583 (729)
+.+|.+-+.=.+.....+|..-+... . .+.-+... -.+...-.||.+.++.
T Consensus 223 C~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~s 302 (968)
T KOG1060|consen 223 CRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPS 302 (968)
T ss_pred HhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcH
Confidence 66554433223333333333322210 0 00011101 1223333455677889
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCc-----------------chH----
Q 004806 584 GKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIP-----------------DGR---- 642 (729)
Q Consensus 584 v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~-----------------e~r---- 642 (729)
+..+++.+.+.|+--.++. +.+..|+.+|.....++.-.+..++.++.-. ...
T Consensus 303 VVmA~aql~y~lAP~~~~~------~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~l 376 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKNQVT------KIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKIL 376 (968)
T ss_pred HHHHHHhHHHhhCCHHHHH------HHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHH
Confidence 9999999999987643222 2466788887544444444444444443211 111
Q ss_pred -----HHHHhCCcHHHH----HHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHH
Q 004806 643 -----VAIGQENGIPVL----VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQA 713 (729)
Q Consensus 643 -----~~i~~~g~I~~L----v~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~ 713 (729)
..++.++-+..+ -..+.+.+......|+.+|..++..... +....+..|+.++.+.+..+...|..
T Consensus 377 KleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~ 451 (968)
T KOG1060|consen 377 KLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVV 451 (968)
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHH
Confidence 111223333333 3334455555666666666665544321 12234666777777766666666655
Q ss_pred HHHHhh
Q 004806 714 LLSYFR 719 (729)
Q Consensus 714 lL~~L~ 719 (729)
.++.|-
T Consensus 452 vIk~Ll 457 (968)
T KOG1060|consen 452 VIKRLL 457 (968)
T ss_pred HHHHHH
Confidence 555543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.15 E-value=5 Score=49.84 Aligned_cols=263 Identities=16% Similarity=0.150 Sum_probs=142.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----Ccc
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN----DNN 519 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~----~~~ 519 (729)
.+..-++.++. .+.+..|+..|+.|+..-. +++ =.-++|.++.++.+...+|+..|+.+|..+... +..
T Consensus 426 ~lts~IR~lk~--~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 426 VLTSCIRALKT--IQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHhhhc--chhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 34444455544 3568899999999987532 221 124689999999999999999999998887421 111
Q ss_pred HHHHHhcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhccC-------------------cchhhhh---hcc------CcH
Q 004806 520 KSAIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVI-------------------EDNKIKI---GRS------GAI 570 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~-~e~r~~Aa~aL~nLS~~-------------------~e~k~~I---~~~------g~I 570 (729)
-..|.-.-.+|.|-+++.+.+ ..+|..-|..|..|+.. +++.... .+. ..+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 222333345666777777633 33444444444444321 0000000 000 112
Q ss_pred HH-HHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcC----cHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHH
Q 004806 571 GP-LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAG----AVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVA 644 (729)
Q Consensus 571 ~~-Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G----~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~ 644 (729)
.. .+.||.+..+-+++.-+..|.-||.+ +.+.+ .+..|+.+| +.+..++..-...+.-++..-.-|
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r-- 651 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR-- 651 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--
Confidence 22 22334444444444444454444431 11111 334444455 333333332222222222211111
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcC
Q 004806 645 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 645 i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~ 723 (729)
-+++..+|.|.+-|..+.+.+...|+.+|.-||...--.+..+.+ .++...-++...+.-+|+.+..++-...++..
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 023455788888888889999999999999999876422223332 24445556667788899999888776665543
|
|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.13 Score=39.69 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=22.3
Q ss_pred ccCccccc--cCceec--CCCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 143 CPLSLELM--TDPVIV--ASGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 143 CpI~~~lm--~dPV~~--~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
||+|.+-| +|=-.. +||+-+||.|..+-...++..||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888887 222233 57999999999888876667799999876
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.8 Score=42.84 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcC---------CCHHHHHHHHHHHHHh
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHS---------SETKIQENAVTALLNL 513 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~Lv~LL~s---------~d~~v~e~Al~aL~nL 513 (729)
.....+++.++...... ..+..|+..-+.. ..--..+.+.||+..|+.+|.. .+...+..++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 45567777777665432 4444554333332 2334556678999999998852 3567889999999988
Q ss_pred hcCCccHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 004806 514 SINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLFSLS 555 (729)
Q Consensus 514 s~~~~~k~~I~~-~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS 555 (729)
..+..+...+.. .+++..|+..|.+.+..++..++.+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 877776667665 589999999999999999999999998775
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=91.76 E-value=8.1 Score=42.40 Aligned_cols=197 Identities=12% Similarity=0.067 Sum_probs=140.3
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH-----HHHhc--CCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004806 482 IANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS-----AIANA--NAIEPLIHVLQTGSPEARENAAATLFS 553 (729)
Q Consensus 482 I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~-----~I~~~--g~I~~Lv~lL~s~~~e~r~~Aa~aL~n 553 (729)
+...|.+..|+..|..-+-+.+..++.+..++... .+.+. .+... ..+..|+.-- +++++-..+...|..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHH
Confidence 44558899999999888999999999999988654 22222 22221 2233333322 246666777788888
Q ss_pred hccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHc---CcHHHHHHhcCC-CHHHHHHH
Q 004806 554 LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQA---GAVKHLVDLMDP-AAGMVDKA 628 (729)
Q Consensus 554 LS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~---G~V~~Lv~LL~~-~~~v~e~A 628 (729)
...++.....|.....+..+.+.+..++-++..+|..++..|-. ++.....++.. ..+.....||.. +--++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 88887777777778888899999999999999999999998654 55555666653 355666677754 44456889
Q ss_pred HHHHHHHhCCcchHHHHHh----CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 629 VAVLANLATIPDGRVAIGQ----ENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 629 l~~L~nLa~~~e~r~~i~~----~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
+.+|+.|-..+.+...+.. ..-+..++.+|++.+..++..|.-+.--..++.
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999988887666543 234888999999999999999999988777765
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.72 E-value=1.1 Score=47.38 Aligned_cols=43 Identities=30% Similarity=0.638 Sum_probs=36.9
Q ss_pred ccccCccccccC---ceecCCCccccHHHHHHHHhcCCC--CCCCCCc
Q 004806 141 FCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLF--VCPKTRQ 183 (729)
Q Consensus 141 f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~--~cP~t~~ 183 (729)
|.||+..+.-.| ||++.|||..-+.++.+--++|.- .||.|..
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 899999998876 999999999999999988887743 4999953
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.43 E-value=2.2 Score=53.84 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=123.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHh-hc-CCccHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNL-SI-NDNNKS 521 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~-~GaI~~Lv~LL~s~d~~v~e~Al~aL~nL-s~-~~~~k~ 521 (729)
....|...+.+.++..+..++..|..+.+.-...+..... ......+..+|...|+.+|..|..-|.-. .. +...|.
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHH
Confidence 4445555666889999888777776665543323332222 24557788899999999999888776432 11 223333
Q ss_pred HHHhcCCHHHHHHHhcCCCHH----------------------HHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcC
Q 004806 522 AIANANAIEPLIHVLQTGSPE----------------------ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN 579 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e----------------------~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~ 579 (729)
. .+..|+.-|..|... .....-.=|+||+. .+++...|-..++|-++
T Consensus 899 ~-----LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~LAnh 967 (1702)
T KOG0915|consen 899 S-----LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQLANH 967 (1702)
T ss_pred H-----HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHHhhh
Confidence 3 344455544332211 01122233334432 23333455555555555
Q ss_pred C-CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch-HHHHHhCCcHHHHHH
Q 004806 580 G-TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVE 656 (729)
Q Consensus 580 ~-~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~I~~Lv~ 656 (729)
. ...-++-|+.=+..|+....-+.+-.-...||.|.++= |++..+......++..|...... ..... ..++..|+.
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~ 1046 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLV 1046 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHH
Confidence 4 23334444444444433221111112234666666654 77777776666666666654322 22222 234556666
Q ss_pred HHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 657 VVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 657 lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
-|.+..-+++|.++.||..|-.+.+
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCC
Confidence 6667788999999999999998865
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.8 Score=45.49 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhc-CCccHHHHHhcCCHHHHHHHhcC
Q 004806 461 QREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQT 538 (729)
Q Consensus 461 q~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~-~~~~k~~I~~~g~I~~Lv~lL~s 538 (729)
...|+..|.-++--++..|..+.....+..|+.+|.. ..+.++..++.+|..+.. ++.|.+.+-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 4567888888888889999999999999999999954 578899999999877654 58888999899999999999987
Q ss_pred CC--HHHHHHHHHHHHHh
Q 004806 539 GS--PEARENAAATLFSL 554 (729)
Q Consensus 539 ~~--~e~r~~Aa~aL~nL 554 (729)
.. .+++...+..|+-.
T Consensus 188 ~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFY 205 (257)
T ss_pred ccccHHHhHHHHHHHHHH
Confidence 64 66777777665543
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.07 Score=41.70 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=37.3
Q ss_pred cccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccC
Q 004806 142 CCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 142 ~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
.|-||.+---|-|+--|||. .|-.|=.+-|...+..||.||.|+
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 49999998888888899995 788888787776778899999875
|
|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.16 Score=53.20 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=40.3
Q ss_pred cccCcc-ccccCcee----cCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 004806 142 CCPLSL-ELMTDPVI----VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 142 ~CpI~~-~lm~dPV~----~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 190 (729)
.||+|. +.+..|-+ -+|||+.|-+|.-+-|..|...||.|+.+|....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 489987 56666653 28999999999999999998889999998866443
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.056 Score=64.19 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=41.5
Q ss_pred ccccCccccccCceecCCCccccHHHHHHHHhcCCC-CCCCCCccCCCCCC
Q 004806 141 FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLF-VCPKTRQTLAHTTL 190 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~-~cP~t~~~l~~~~l 190 (729)
+.|+||.+ -.+||++.|||.||+.|+...+..... .||.|+..+.+..+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 899999999999999999999876433 49999887765444
|
|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.28 Score=38.09 Aligned_cols=41 Identities=15% Similarity=0.414 Sum_probs=32.3
Q ss_pred cccCccc--cccCceecCCC-----ccccHHHHHHHHhcC-CCCCCCCC
Q 004806 142 CCPLSLE--LMTDPVIVASG-----QTYERAFIKKWIDLG-LFVCPKTR 182 (729)
Q Consensus 142 ~CpI~~~--lm~dPV~~~~G-----~ty~r~~I~~~~~~~-~~~cP~t~ 182 (729)
.|-||++ --.+|.+.||. +-|=+.|+.+|+... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3778875 55788888875 679999999999765 45699985
|
Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=90.86 E-value=7 Score=38.66 Aligned_cols=92 Identities=23% Similarity=0.263 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcH-HHHHHhh
Q 004806 499 ETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAI-GPLVDLL 577 (729)
Q Consensus 499 d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I-~~Lv~LL 577 (729)
++.++.+++.+|+.|+..-.+ .-...++.+...|+++++.+|..|+.+|..|...+-.|. .|-+ ..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence 577899999999999754221 112458889999999999999999999999975432222 2433 7788888
Q ss_pred cCCCHHHHHHHHHHHHhcccC
Q 004806 578 GNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 578 ~~~~~~v~~~Al~aL~nLs~~ 598 (729)
.+.++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999988664
|
|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.061 Score=45.07 Aligned_cols=47 Identities=17% Similarity=0.439 Sum_probs=23.3
Q ss_pred cccccCcccccc-C---ceec----CCCccccHHHHHHHHhc--CC--------CCCCCCCccCC
Q 004806 140 DFCCPLSLELMT-D---PVIV----ASGQTYERAFIKKWIDL--GL--------FVCPKTRQTLA 186 (729)
Q Consensus 140 ~f~CpI~~~lm~-d---PV~~----~~G~ty~r~~I~~~~~~--~~--------~~cP~t~~~l~ 186 (729)
+..|+||...+. + |+++ .||++|=..||.+||.. +. .+||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998654 2 5553 58999999999999974 11 24999998875
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=90.55 E-value=13 Score=43.45 Aligned_cols=132 Identities=23% Similarity=0.316 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA 522 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~ 522 (729)
..-..++...+ ++..+++-|+..|..+.++-++... .+|..++.|..++|..|+..|+..|-.++.+ ++....
T Consensus 23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k 96 (556)
T PF05918_consen 23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence 34455555555 5678888999999999988766544 4788999999999999999999999999876 333333
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc---CCCHHHHHHHHHHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG---NGTPRGKKDAATALF 593 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~---~~~~~v~~~Al~aL~ 593 (729)
+ ...|+++|.+.++.-...+-.+|..|-.. + -.+.+..|..-+. .++..+++.++..|.
T Consensus 97 v-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~-d------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 V-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQ-D------PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp H-----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred H-----HHHHHHHHhcccHHHHHHHHHHHHHHHhc-C------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 3 67788999887755444444444443211 0 1245555555544 566777777777664
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.16 Score=55.32 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=40.0
Q ss_pred CCcccccCccccccCce-----e---cCCCccccHHHHHHHHhcCC------CCCCCCCccCC
Q 004806 138 PSDFCCPLSLELMTDPV-----I---VASGQTYERAFIKKWIDLGL------FVCPKTRQTLA 186 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV-----~---~~~G~ty~r~~I~~~~~~~~------~~cP~t~~~l~ 186 (729)
-.+..|-||.+.-.+++ . .+|-|+||-.||.+|-.... ..||+||.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45889999999999998 3 45999999999999984332 45999997753
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=90.42 E-value=7.9 Score=43.25 Aligned_cols=216 Identities=15% Similarity=0.194 Sum_probs=127.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-C---CCHHHHHHHHHHHHHhhcCCccHH
Q 004806 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-S---SETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 446 V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s---~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
+..+++.-..--+.+...|+..+..+..+.|..-..|.++|.++.++..+. . ...++....-.+|..||.+.....
T Consensus 111 L~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~ 190 (379)
T PF06025_consen 111 LKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLE 190 (379)
T ss_pred HHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHH
Confidence 344444433334567888999999999999999999999999999999887 4 356666666778888899999999
Q ss_pred HHHhcCCHHHHHHHhcCCC-H-HHHH-HHH----HHHHHhccC-cchhhhhhcc--CcHHHHHHhhcCCCHHHHHHHHHH
Q 004806 522 AIANANAIEPLIHVLQTGS-P-EARE-NAA----ATLFSLSVI-EDNKIKIGRS--GAIGPLVDLLGNGTPRGKKDAATA 591 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~-~-e~r~-~Aa----~aL~nLS~~-~e~k~~I~~~--g~I~~Lv~LL~~~~~~v~~~Al~a 591 (729)
.+.+.+.++.+++++.+.. . .++. ..+ ..+-.|..+ +..|..+.+. ..+..++.+-+......-..+-..
T Consensus 191 ~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~g~~~~~~~~~~~~~~ 270 (379)
T PF06025_consen 191 KVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVELGKDKAPECGWGAKLW 270 (379)
T ss_pred HHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccc
Confidence 9999999999999987654 1 1111 222 333344442 3445444432 333333333333221110000000
Q ss_pred H-------------HhcccCcHHHHHHHHcC-cHHHHH-----------Hhc-C--------CCHHHHHHHHHHHHHHhC
Q 004806 592 L-------------FNLSIYHENKARIVQAG-AVKHLV-----------DLM-D--------PAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 592 L-------------~nLs~~~en~~~lv~~G-~V~~Lv-----------~LL-~--------~~~~v~e~Al~~L~nLa~ 637 (729)
. .+.....+ .......+ ...... .-. + .-......++..|..+-.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~YI~~v~rFLea~fs 349 (379)
T PF06025_consen 271 TEDSQGKPVVSGESSAVSTDEE-MEEDVEEDDDMESVDTSSQDSTEPDSESSEDEDPDSPELPLTDYIFNVVRFLEAFFS 349 (379)
T ss_pred ccccCCCCCCCCCccccccccc-cccccccccccccccccccCCCCCccccccccccCcccCcHHHHHHHHHHHHHHHcC
Confidence 0 00000000 00000000 000000 000 0 012457788888888888
Q ss_pred CcchHHHHHhCCcHHHHHHHHccCC
Q 004806 638 IPDGRVAIGQENGIPVLVEVVELGS 662 (729)
Q Consensus 638 ~~e~r~~i~~~g~I~~Lv~lL~s~s 662 (729)
+.+....+++.||+..|++++...+
T Consensus 350 N~~~C~~FVe~GGie~LLdLl~LPs 374 (379)
T PF06025_consen 350 NSDHCREFVEKGGIELLLDLLTLPS 374 (379)
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 8999999999999999999987653
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.073 Score=61.93 Aligned_cols=47 Identities=17% Similarity=0.389 Sum_probs=39.8
Q ss_pred cccccCccccccCcee---cCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 140 DFCCPLSLELMTDPVI---VASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~---~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.=.||+|..-+.|-.+ .+|||.||..||..|-+.. .+||.||..|..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhhe
Confidence 3469999999999887 4799999999999999865 679999987754
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.68 Score=42.88 Aligned_cols=70 Identities=10% Similarity=0.107 Sum_probs=59.1
Q ss_pred cHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 650 GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 650 ~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
.+..|+++|. +.++.....|+.=|..++...|..+..+-+.|+-..+..|+...++.+|..|..++..|-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4789999994 457788888999999999999988888888999999999999999999999999887653
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.16 Score=56.55 Aligned_cols=33 Identities=21% Similarity=0.560 Sum_probs=28.4
Q ss_pred ecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 155 IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 155 ~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
++||.|.|-|.|+++|.+.-.-.||+||++|+.
T Consensus 603 ~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 603 LTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 469999999999999999654569999999864
|
|
| >KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.2 Score=54.27 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=48.0
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
...+|.+++-.|.|||-+..|..||-..|--|++.. .+-|.|++++..++|++
T Consensus 39 P~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~-g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 39 PFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH-GTNPITGQKLDGKDLIK 91 (518)
T ss_pred ChhhceeccccccCcccccCCcEEeeehhhHHHHHc-CCCCCCCCcccccccee
Confidence 346899999999999999999999999999999975 46899999999999887
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.04 E-value=4.7 Score=46.18 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=111.7
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCC-----CHHHHHHHHHHHHHHhCCcchH
Q 004806 568 GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDP-----AAGMVDKAVAVLANLATIPDGR 642 (729)
Q Consensus 568 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~-----~~~v~e~Al~~L~nLa~~~e~r 642 (729)
.....+.+++.+++...+..|+..|..|+.++.....++...++..|..++.+ ...+....+.++..|-.+.-.-
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 34567788889999888888999999999999999999999999999999832 2334444555555444322110
Q ss_pred HHHHhCCcHHHHHHHHc--cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 643 VAIGQENGIPVLVEVVE--LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 643 ~~i~~~g~I~~Lv~lL~--s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
=......+|.....++. .....+-..|+..|-++..++....+.|.++--++.|+..++..+.++...|..+|..|-.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 00111223444444442 2345566778899999888888888999999999999999999999999999998877654
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=89.74 E-value=33 Score=41.97 Aligned_cols=210 Identities=20% Similarity=0.224 Sum_probs=118.3
Q ss_pred HHHHHHHHhcC-----CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc----CCC----HHHHHHHHHHHH
Q 004806 445 QVRKLVEDLKS-----TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH----SSE----TKIQENAVTALL 511 (729)
Q Consensus 445 ~V~~Lv~~L~s-----~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~----s~d----~~v~e~Al~aL~ 511 (729)
.+..|+..+.+ +..+.-...+..|+.+++. ..||..+.+.|+++.|+..|. ... ..+.+.-+.++.
T Consensus 118 GL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 118 GLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred CHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 34555555543 2223334456666677774 789999999999999999874 333 567777777766
Q ss_pred HhhcCCcc------HHHHH-------hcCCHHHHHHHhcCC----CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHH
Q 004806 512 NLSINDNN------KSAIA-------NANAIEPLIHVLQTG----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLV 574 (729)
Q Consensus 512 nLs~~~~~------k~~I~-------~~g~I~~Lv~lL~s~----~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv 574 (729)
-|...... ..... ....+..|+..+.+. ++.+....+++|-+|+..+..+....-. .+.+.+
T Consensus 197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~F~p~l 275 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-HFKPYL 275 (802)
T ss_pred HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-HHHHhc
Confidence 65322111 01000 112366666666654 4778888899999998754443322211 112222
Q ss_pred HhhcC-----CCHHHHHHHHHHHHhccc----C---cHHHHHHHHcCcHHHHHHhcC---C------CHH--------HH
Q 004806 575 DLLGN-----GTPRGKKDAATALFNLSI----Y---HENKARIVQAGAVKHLVDLMD---P------AAG--------MV 625 (729)
Q Consensus 575 ~LL~~-----~~~~v~~~Al~aL~nLs~----~---~en~~~lv~~G~V~~Lv~LL~---~------~~~--------v~ 625 (729)
++=+- .+.... +.+++.++. + ..-|..+++.|++...+++|. + +++ ..
T Consensus 276 ~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 276 DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 21111 112222 334443332 2 245778999999998888771 1 111 23
Q ss_pred HHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc
Q 004806 626 DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 660 (729)
Q Consensus 626 e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s 660 (729)
..++.+|.-||..-..-+.++...++ .++..|+.
T Consensus 353 p~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEq 386 (802)
T PF13764_consen 353 PYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQ 386 (802)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhc
Confidence 46778888888855544444556666 55555544
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.59 E-value=9.6 Score=46.17 Aligned_cols=263 Identities=17% Similarity=0.194 Sum_probs=149.9
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc--CCccH
Q 004806 444 TQVRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI--NDNNK 520 (729)
Q Consensus 444 ~~V~~Lv~~L-~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~--~~~~k 520 (729)
..++.++..+ +...+.++..++..+..+++.-+. .....+.++.++.++.++...+++.|...+.++.. +...
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~- 311 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD- 311 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-
Confidence 3344444444 355677888888888888885332 66677899999999998888899999888887743 2221
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc--C
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI--Y 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~--~ 598 (729)
=......+.++.....++...+...+...+.|+..-.. .......+++...+++.....++..++.-...++. +
T Consensus 312 --d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 312 --DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred --hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence 12234678888999999999999988888877652222 33444567778888887766666655554444443 2
Q ss_pred cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 599 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
.+....+.....++.+-.+. +.+..+....+.....+.-.-. ...- -....+.+...++...+.++.+-.+.+..+-
T Consensus 388 ~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~ 465 (759)
T KOG0211|consen 388 ASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLE 465 (759)
T ss_pred cccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC-ccccChhhhhhcchhhHHHHHhhHHHHHHHH
Confidence 23344455555566666665 4445555444444444432111 0000 0112455555555566666666655443332
Q ss_pred hCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHH
Q 004806 678 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716 (729)
Q Consensus 678 ~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~ 716 (729)
...+......+....++.|..+......|++.+..+-+.
T Consensus 466 ~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip 504 (759)
T KOG0211|consen 466 EVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIP 504 (759)
T ss_pred hccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHH
Confidence 222211122223334444444444444444444444333
|
|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.087 Score=54.35 Aligned_cols=55 Identities=18% Similarity=0.421 Sum_probs=43.3
Q ss_pred CcccccCccccccCce----------ecCCCccccHHHHHHHHhcC-CCCCCCCCccCCCCCCccc
Q 004806 139 SDFCCPLSLELMTDPV----------IVASGQTYERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV----------~~~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN 193 (729)
++=.|.+|++=+-+-| .++|+|+|---||..|.--| ..|||-|++.+..+.+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 3567999998776666 58999999999999997644 4689999988766555544
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.48 E-value=7.7 Score=45.43 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=103.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh---cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHh
Q 004806 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN---CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN 525 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~---~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~ 525 (729)
.+..+..-..+++.-|+..||.+.++...+-..+-. ..++.-|+..+. .++..+.-++++|.|+-.++.++..++.
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344444567788899999999999986555444332 235555666655 4577788899999999888777777765
Q ss_pred c--CCHHHHHHHhcCCCHHHHHHHHHHHHHhcc--CcchhhhhhccCcHHHHHHhhcC---C--CHHHHHHHHHHHHhcc
Q 004806 526 A--NAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGRSGAIGPLVDLLGN---G--TPRGKKDAATALFNLS 596 (729)
Q Consensus 526 ~--g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~--~~e~k~~I~~~g~I~~Lv~LL~~---~--~~~v~~~Al~aL~nLs 596 (729)
. -.+.+++..=...+..++...+....|++. ...+-. .+..+.|..++.. . +-+.....+.||.+|+
T Consensus 628 ~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 628 RLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred HHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 5 112222222122235566666666666654 222211 3445555444432 1 3345667788999999
Q ss_pred cCcHHHHHHHHcCcHHHHHHhc
Q 004806 597 IYHENKARIVQAGAVKHLVDLM 618 (729)
Q Consensus 597 ~~~en~~~lv~~G~V~~Lv~LL 618 (729)
..+....++.+.--|..++.-+
T Consensus 704 t~~~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 704 TVDASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred cccHHHHHHHHhcCHHHHHHHH
Confidence 8888888887766677776665
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=88.98 E-value=4 Score=42.96 Aligned_cols=183 Identities=16% Similarity=0.175 Sum_probs=111.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcC--CHHHHHHHhcC----CCHHHHHHHHHHHHHhccCcchh
Q 004806 488 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN--AIEPLIHVLQT----GSPEARENAAATLFSLSVIEDNK 561 (729)
Q Consensus 488 I~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g--~I~~Lv~lL~s----~~~e~r~~Aa~aL~nLS~~~e~k 561 (729)
+..+..++.....+-+--++-.+.-+..++..-..+...+ ....+..++.. ..+..+..+++++.|+-.+...+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 4455555555544445566667766666665555554432 24445555433 35778889999999998888888
Q ss_pred hhhhcc-C-cHHHHHHhhcCC----CHHHHHHHHHHHHhcccCc-HHH-HHHHHcCcHHHHHHhc-C--CCHHHHHHHHH
Q 004806 562 IKIGRS-G-AIGPLVDLLGNG----TPRGKKDAATALFNLSIYH-ENK-ARIVQAGAVKHLVDLM-D--PAAGMVDKAVA 630 (729)
Q Consensus 562 ~~I~~~-g-~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~~~-en~-~~lv~~G~V~~Lv~LL-~--~~~~v~e~Al~ 630 (729)
..+... + .+-..+..+... +..++..++.+++|++..- ..+ ..-....++..+++.+ . .+.+..-.++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 777665 3 444444444444 6788889999999997621 111 1111222455566633 2 57888899999
Q ss_pred HHHHHhCCcchHHHHHhCCcHHHHH-HHH-ccCCHHHHHHHH
Q 004806 631 VLANLATIPDGRVAIGQENGIPVLV-EVV-ELGSARGKENAA 670 (729)
Q Consensus 631 ~L~nLa~~~e~r~~i~~~g~I~~Lv-~lL-~s~s~~~ke~A~ 670 (729)
+|++|.............-++...+ ..- ....++.++.+.
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 9999998777766666643333333 332 335566666543
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.58 E-value=19 Score=40.01 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHhh-cCCccHHH-HHhcCCH
Q 004806 457 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-----ETKIQENAVTALLNLS-INDNNKSA-IANANAI 529 (729)
Q Consensus 457 ~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-----d~~v~e~Al~aL~nLs-~~~~~k~~-I~~~g~I 529 (729)
+.++..+|+++|.++.+++...|....+......++.++... ...+...=+..|.-|. .....|.+ +++.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 346788999999999999999999988887777777766431 1223344455554443 23444444 5677999
Q ss_pred HHHHHHhcCC---------C------HHHHHHHHHHHHHhccC
Q 004806 530 EPLIHVLQTG---------S------PEARENAAATLFSLSVI 557 (729)
Q Consensus 530 ~~Lv~lL~s~---------~------~e~r~~Aa~aL~nLS~~ 557 (729)
+.+...|.+. . ......++.+++|+..+
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence 9999988632 1 23455788889999774
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.40 E-value=9.6 Score=46.04 Aligned_cols=194 Identities=13% Similarity=0.107 Sum_probs=113.1
Q ss_pred HHHHhhc-CCccHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcchhhhhhccCcHH--HHHHhhcCCCH-H
Q 004806 509 ALLNLSI-NDNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIG--PLVDLLGNGTP-R 583 (729)
Q Consensus 509 aL~nLs~-~~~~k~~I~~~g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~--~Lv~LL~~~~~-~ 583 (729)
+|+++.. ++.+...+.+.|++..+.+.++.- ..+++..+.+.|.+++...+.+........+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 3444433 356677888999999999999854 47788899999999987665544433322222 22223333333 5
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHH-HHHHHc-cC
Q 004806 584 GKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPV-LVEVVE-LG 661 (729)
Q Consensus 584 v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~-Lv~lL~-s~ 661 (729)
.-..|+..|..+..+.+.. ...+ ....+.+.....+... ......+.....+.. +..++. +.
T Consensus 574 rsY~~~siLa~ll~~~~~~---~~~~----------~r~~~~~~l~e~i~~~---~~~~~~~~~~~~f~~~~~~il~~s~ 637 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKT---TECV----------FRNSVNELLVEAISRW---LTSEIRVINDRSFFPRILRILRLSK 637 (699)
T ss_pred HHHHHHHHHHHHHhCCCcC---cccc----------chHHHHHHHHHHhhcc---CccceeehhhhhcchhHHHHhcccC
Confidence 5566666666665533220 0000 0111111111111111 111111111122222 444553 46
Q ss_pred CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHh
Q 004806 662 SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYF 718 (729)
Q Consensus 662 s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L 718 (729)
.+..+..|++++.+++...++++..+.+.|+++.+..+.... ...++..+..++...
T Consensus 638 ~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 638 SDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred CCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 788999999999999999999999999999999998875443 456666666665544
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.39 E-value=2.9 Score=50.04 Aligned_cols=177 Identities=14% Similarity=0.065 Sum_probs=109.0
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHH
Q 004806 535 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHL 614 (729)
Q Consensus 535 lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~L 614 (729)
.+.++-..+|..++..|..+....+.+..+...+++...++.|++.++-+--.|...+..||.- .....++.|
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL 807 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL 807 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence 3444456678888888888887666666677779999999999999988888888877777651 223456666
Q ss_pred HH-hcC----CCHHHHHHHHHHHHHHhCC-cchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHH
Q 004806 615 VD-LMD----PAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL 688 (729)
Q Consensus 615 v~-LL~----~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl 688 (729)
.+ ... ...+.+-.+..++.+++.. .+-.... .+-.+...+..++.++..-+..++.+|.+||.........++
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 66 331 1123333444555554431 1111111 112345556666666666788889999999876542222222
Q ss_pred hCCCHHHHHHhhhCCC-HHHHHHHHHHHHHhhc
Q 004806 689 QEGAVPPLVALSQSGT-PRAKEKAQALLSYFRN 720 (729)
Q Consensus 689 ~~G~v~~Lv~Ll~sg~-~rvr~~A~~lL~~L~~ 720 (729)
- .++..++.+.+.+. .-+|+.|..++..+-+
T Consensus 887 ~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 887 H-EVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred H-HHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 2 14566666666554 6788888887766544
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=88.37 E-value=7.4 Score=43.95 Aligned_cols=187 Identities=16% Similarity=0.172 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL-~s~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
...+..++.... ..++..+..++..+..+...-+..- .+ ..++..+...+ ...+...+..++.++..+. |
T Consensus 188 ~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----K 259 (415)
T PF12460_consen 188 EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWIT-----K 259 (415)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----H
Confidence 457888888865 4456777888888888876521111 11 12333333333 2333444444444444332 2
Q ss_pred HHHHh-----cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cch--------hhhhhcc----CcHHHHHHhhcCCCH
Q 004806 521 SAIAN-----ANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDN--------KIKIGRS----GAIGPLVDLLGNGTP 582 (729)
Q Consensus 521 ~~I~~-----~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~--------k~~I~~~----g~I~~Lv~LL~~~~~ 582 (729)
..++. ...+..|+.+|.+ +++...|+..+.-|..+ ++. -..+... ..+|.|++-.+..+.
T Consensus 260 aLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 260 ALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred HHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 22222 1356678888866 66777888888877665 332 1122222 456777777777676
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCc
Q 004806 583 RGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLANLATIP 639 (729)
Q Consensus 583 ~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~ 639 (729)
..+...+.||.+|..+-.....+-+ ...+|.|++-|+ ++..++..++.+|..+....
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 6888888899998774332222222 457888888885 66778888999999888754
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=88.31 E-value=52 Score=37.52 Aligned_cols=186 Identities=13% Similarity=0.124 Sum_probs=111.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcC----CccHHHHHhcCCHHHHHHHhcCCC-----HH--HHHHHHHHHHHhccCcc
Q 004806 491 LVDMLHSSETKIQENAVTALLNLSIN----DNNKSAIANANAIEPLIHVLQTGS-----PE--ARENAAATLFSLSVIED 559 (729)
Q Consensus 491 Lv~LL~s~d~~v~e~Al~aL~nLs~~----~~~k~~I~~~g~I~~Lv~lL~s~~-----~e--~r~~Aa~aL~nLS~~~e 559 (729)
+..++...+.+=+-.|+-..-.+..+ ..+|+.+.++-+.+-+=++|.+++ ++ .+.-+..+|.-.+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 44455544444444455445555543 246778888877777888887542 22 45566777777777666
Q ss_pred hhhhhhccCcHHHHHHhhcCC-CH------HHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHH
Q 004806 560 NKIKIGRSGAIGPLVDLLGNG-TP------RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD--PAAGMVDKAVA 630 (729)
Q Consensus 560 ~k~~I~~~g~I~~Lv~LL~~~-~~------~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~ 630 (729)
....----..||.|..++..+ ++ -+..++..+|..++..+.+...++..|+++.+.++-. ....-...++.
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 432211126789998888754 22 3678899999999999999999999999999998752 21212233344
Q ss_pred HHHHHhC----CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 631 VLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 631 ~L~nLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
++..+.. .++.-..+..- |..+..=+...+...+...+..|..+-.
T Consensus 176 Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 176 VLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4433332 22222222211 3333333344455667777777765433
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=88.26 E-value=9.7 Score=42.56 Aligned_cols=219 Identities=16% Similarity=0.157 Sum_probs=130.5
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----CccHH--------HHHhcCCHH
Q 004806 463 EATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN----DNNKS--------AIANANAIE 530 (729)
Q Consensus 463 ~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~----~~~k~--------~I~~~g~I~ 530 (729)
.|++.|-.+....+..-..+.+.+++..++..|..+-..+.+. -.+...+ +..+. .......+.
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK 78 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE----NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLK 78 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----ccccCCCCCCCCCcccccccccccCHHHHHHHH
Confidence 3555666666655566667788999999999986432222221 0011100 11111 112223444
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcc-C---cchhhhhhc-cCcHHHHHHhhcCC---CHHHHHHHHHHHHhcccC-cHH
Q 004806 531 PLIHVLQTGSPEARENAAATLFSLSV-I---EDNKIKIGR-SGAIGPLVDLLGNG---TPRGKKDAATALFNLSIY-HEN 601 (729)
Q Consensus 531 ~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~---~e~k~~I~~-~g~I~~Lv~LL~~~---~~~v~~~Al~aL~nLs~~-~en 601 (729)
.|++++. .+.. . .+.-..+.+ ......|..++++. .+.+...|+.++..+-.+ +..
T Consensus 79 ~lLk~l~---------------~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~ 143 (379)
T PF06025_consen 79 SLLKFLS---------------HAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS 143 (379)
T ss_pred HHHHHHH---------------HHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch
Confidence 4444332 1111 1 111122334 34455566667665 467888888888887664 455
Q ss_pred HHHHHHcCcHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCH-------HHHHHH
Q 004806 602 KARIVQAGAVKHLVDLMD-----PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSA-------RGKENA 669 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL~-----~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~-------~~ke~A 669 (729)
-..+.++|+++.+++.+. +..++....-.+|..||-+..|.+.+.+.+.+..+++++.+..- .....-
T Consensus 144 ~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~l 223 (379)
T PF06025_consen 144 FSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNL 223 (379)
T ss_pred hHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHH
Confidence 667778999999998773 45666666778999999999999999999999999999876321 112222
Q ss_pred HHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhh
Q 004806 670 AAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ 701 (729)
Q Consensus 670 ~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~ 701 (729)
-..+-.|.++.+..+..+++. ++..|-++..
T Consensus 224 G~~~DEL~RH~p~Lk~~i~~~-ii~~l~~l~~ 254 (379)
T PF06025_consen 224 GNSFDELMRHHPSLKPDIIDA-IIKILDRLVE 254 (379)
T ss_pred HHHHHHHHccCHHHHHHHHHH-HHHHHHHHHH
Confidence 334556777877777666654 3333333333
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=88.18 E-value=1.8 Score=42.70 Aligned_cols=77 Identities=13% Similarity=0.258 Sum_probs=62.3
Q ss_pred HHHHHHcCcHHHHHHhcC----------CCHHHHHHHHHHHHHHhCCcchHHHHHh-CCcHHHHHHHHccCCHHHHHHHH
Q 004806 602 KARIVQAGAVKHLVDLMD----------PAAGMVDKAVAVLANLATIPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAA 670 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL~----------~~~~v~e~Al~~L~nLa~~~e~r~~i~~-~g~I~~Lv~lL~s~s~~~ke~A~ 670 (729)
...|++.|++..|+++|. .+......++.+|..|..+..|...++. .+++..|+..|.+.+..++..|+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 456788899999999871 2345677899999999999999988886 56799999999999999999999
Q ss_pred HHHHHHhh
Q 004806 671 AALLQLCT 678 (729)
Q Consensus 671 ~aL~nL~~ 678 (729)
.+|..+|.
T Consensus 180 eiL~~lc~ 187 (187)
T PF06371_consen 180 EILAALCL 187 (187)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 99999883
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.08 E-value=11 Score=45.40 Aligned_cols=184 Identities=13% Similarity=0.125 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
.......+..+.++.+.++..|+..|+.+.... +....+...+++...+..|++.|+-+--+|+..+..|+.-
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev------ 798 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV------ 798 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh------
Confidence 445677778888888889999999999999854 4555666779999999999999999988888877666531
Q ss_pred HHhcCCHHHHHH-HhcCCC---HHHHHHHHHHHHHhccCcchhhhhhc---cCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 523 IANANAIEPLIH-VLQTGS---PEARENAAATLFSLSVIEDNKIKIGR---SGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 523 I~~~g~I~~Lv~-lL~s~~---~e~r~~Aa~aL~nLS~~~e~k~~I~~---~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
.....++.|.. ..+... ++.+...-.++.++..- +..++. .-.+...+..+++++...+..++.++++|
T Consensus 799 -y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa---~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 799 -YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQA---LGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred -cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHH---hccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 22345565555 232211 23333333444433210 000000 01223333334455556677777777777
Q ss_pred ccCcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhC
Q 004806 596 SIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 596 s~~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~ 637 (729)
|.--..+..=.=..++..++.+. +...-++..|+-++..+-.
T Consensus 875 cq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 875 CQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 65222111001122344444444 2334455666666666554
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=87.92 E-value=18 Score=41.05 Aligned_cols=146 Identities=19% Similarity=0.138 Sum_probs=98.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccCcc----hhhhhhccCcHHHHHHhhcCC-------CHHHHHHHHHHHHhcccCc
Q 004806 531 PLIHVLQTGSPEARENAAATLFSLSVIED----NKIKIGRSGAIGPLVDLLGNG-------TPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 531 ~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e----~k~~I~~~g~I~~Lv~LL~~~-------~~~v~~~Al~aL~nLs~~~ 599 (729)
.+..++...+.+-+-.|+-....+..+++ +|..+.+.-+++-+-.+|.+. +.-.+..++..|...|..+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 34555655566666566655666665433 577788887788888888753 2334566777888888877
Q ss_pred HHHHHHHHcCcHHHHHHhcC----CC----HHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCC-HHHHHHHH
Q 004806 600 ENKARIVQAGAVKHLVDLMD----PA----AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS-ARGKENAA 670 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~LL~----~~----~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s-~~~ke~A~ 670 (729)
+....----..||.|++++. ++ ..+++.+-.+|..+++.+.|...++..|+++.+.++-...+ .-..+-|+
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal 174 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALAL 174 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHH
Confidence 75432222347899999882 22 34789999999999999999999999999999987754432 22233344
Q ss_pred HHHHHH
Q 004806 671 AALLQL 676 (729)
Q Consensus 671 ~aL~nL 676 (729)
.++.-+
T Consensus 175 ~Vlll~ 180 (698)
T KOG2611|consen 175 KVLLLL 180 (698)
T ss_pred HHHHHH
Confidence 444433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.55 E-value=3.8 Score=49.01 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=33.1
Q ss_pred ccccCccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCc
Q 004806 141 FCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQ 183 (729)
Q Consensus 141 f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~ 183 (729)
=.|..|...+.=|++ -.|||.|-+.|.+ .+...||.|+-
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 479999999999998 5899999999988 44466999964
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.23 E-value=4.5 Score=50.09 Aligned_cols=142 Identities=21% Similarity=0.156 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhc----CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLK----STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~----s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~~ 517 (729)
....+.+++..+ .++++.|..|..+|..|.--+.+... -..|.|+..+. ++++.++-+++.+|+.|+..-
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 456777777774 45799999999999887664432222 35789999997 789999999999999997542
Q ss_pred ccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 518 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
++- -...-+.|.+.|.+.++.+|..|..+|.+|-.++.. --.|.++.+..+|.+++.+++..|-.....|+.
T Consensus 993 pnl----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmi----KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 993 PNL----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMI----KVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccc----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhh----HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 211 112345677888899999999999999999654433 336999999999999999988877755555543
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.18 E-value=18 Score=38.16 Aligned_cols=195 Identities=24% Similarity=0.257 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc--
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDN-- 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~-- 518 (729)
...|+.|+.-|... .+-++.+|..+|..+.. . +..+.|-+..+++...+.+....+|..+-....
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-P----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-h----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 45678888887744 45567788888877652 1 345566666655666666655555555532110
Q ss_pred ---cHHHH--------HhcCCHHHHHHHhcCCC-HHH-HHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHH
Q 004806 519 ---NKSAI--------ANANAIEPLIHVLQTGS-PEA-RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGK 585 (729)
Q Consensus 519 ---~k~~I--------~~~g~I~~Lv~lL~s~~-~e~-r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~ 585 (729)
+.... ...+-+..|-..|...+ +.. ++.|.-.|.|+ +...+|..|++=|..++.-.+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHHH
Confidence 00011 11122444444444333 222 33333334433 224567777877887888888
Q ss_pred HHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-C--CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCC
Q 004806 586 KDAATALFNLSIYHENKARIVQAGAVKHLVDLM-D--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS 662 (729)
Q Consensus 586 ~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s 662 (729)
..++.++..| ...-+|+.|.+.| + +..-++..|+.+|+.++. ...++.|.+++....
T Consensus 205 hEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 205 HEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH
Confidence 8888888876 2334678888877 2 445567788888888774 346788888888888
Q ss_pred HHHHHHHHHHHHHHhh
Q 004806 663 ARGKENAAAALLQLCT 678 (729)
Q Consensus 663 ~~~ke~A~~aL~nL~~ 678 (729)
+-+++.|..+|-.+-.
T Consensus 265 ~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 265 RVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877755443
|
|
| >KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.17 E-value=0.33 Score=55.66 Aligned_cols=61 Identities=18% Similarity=0.345 Sum_probs=41.9
Q ss_pred CcccccCccccc----cCceecCCCccccHHHHHHHHhcCCCCCC--CCCcc--CCCCCCcccHHHHHHHHH
Q 004806 139 SDFCCPLSLELM----TDPVIVASGQTYERAFIKKWIDLGLFVCP--KTRQT--LAHTTLIPNYTVKALIAN 202 (729)
Q Consensus 139 ~~f~CpI~~~lm----~dPV~~~~G~ty~r~~I~~~~~~~~~~cP--~t~~~--l~~~~l~pN~~l~~~I~~ 202 (729)
+-++|+||..+| ..||.+-||||.||.|.+.-... +|| .-.-. ...+.+.-|++|-+.+..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~~d 78 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRREHD 78 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhhcc
Confidence 347899997776 57999999999999999987765 477 22111 122345557777665543
|
|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
Probab=86.53 E-value=0.46 Score=50.58 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=36.2
Q ss_pred CcccccCccccccC--cee--cCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 004806 139 SDFCCPLSLELMTD--PVI--VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 139 ~~f~CpI~~~lm~d--PV~--~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 190 (729)
+++ ||+|.+-|.- --. -+||+..||-|-...-+.-+..||.||..++.+..
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 455 9999998742 222 36899999999655444434569999998887643
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=86.31 E-value=16 Score=44.76 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=110.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
+.+.+-..+.+.++..+.+|+..+........ ........|.+..++.... +.+..+.-.|+.+|..|+..-.....=
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 34555566667888888999999887776432 1111111233444444332 346667777888887776431111111
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-Cc-HH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YH-EN 601 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~-en 601 (729)
...+.++.|+.-+......++..+..++-..+. .-.....++.+...++++++.++..+...+..... .. .+
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 233677888888877766676666655554432 11112567778888999999998887776665433 22 22
Q ss_pred HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 602 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
...-.-.++++.++... +.+..++..|..+++.+-.
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 22223345666666666 6778888877777665543
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=86.28 E-value=3.3 Score=43.63 Aligned_cols=135 Identities=17% Similarity=0.133 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHhcccCcHHHHHHHHcC--cHHHHHHhc-CC----CHHHHHHHHHHHHHHhCCc-chHH-HHHhCCc
Q 004806 580 GTPRGKKDAATALFNLSIYHENKARIVQAG--AVKHLVDLM-DP----AAGMVDKAVAVLANLATIP-DGRV-AIGQENG 650 (729)
Q Consensus 580 ~~~~v~~~Al~aL~nLs~~~en~~~lv~~G--~V~~Lv~LL-~~----~~~v~e~Al~~L~nLa~~~-e~r~-~i~~~g~ 650 (729)
..+..+..+++++.|+-.+...+..+.+.. .+-..+..+ .. +..++..+..++.|++..- ..+. .=.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 467788889999999988888888777633 233333333 33 4566677778888887511 0000 0000112
Q ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC-CCHHHHHHHHHH
Q 004806 651 IPVLVEVVEL--GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-GTPRAKEKAQAL 714 (729)
Q Consensus 651 I~~Lv~lL~s--~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s-g~~rvr~~A~~l 714 (729)
+..+++.+.. .++++..+++.+|++|+..++.........|+...+...... ..+|+++.+.+|
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 4555553322 689999999999999998776555555445666665555544 458999888765
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.87 E-value=0.5 Score=51.32 Aligned_cols=52 Identities=15% Similarity=0.376 Sum_probs=37.9
Q ss_pred CCcccccCccccccCcee-----c-CCCccccHHHHHHHHhcCCC--CCCCCCccCCCCCCc
Q 004806 138 PSDFCCPLSLELMTDPVI-----V-ASGQTYERAFIKKWIDLGLF--VCPKTRQTLAHTTLI 191 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~-----~-~~G~ty~r~~I~~~~~~~~~--~cP~t~~~l~~~~l~ 191 (729)
|---.|.||-+.+ |+. + .|||+|.-.|+.+||+..+. +||.|+-.+......
T Consensus 2 pi~A~C~Ic~d~~--p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 2 PIMAECHICIDGR--PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred CccceeeEeccCC--ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 3345699996654 442 3 49999999999999997655 699998556554443
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=85.63 E-value=1.4 Score=30.45 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=25.1
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 004806 487 AINILVDMLHSSETKIQENAVTALLNLSI 515 (729)
Q Consensus 487 aI~~Lv~LL~s~d~~v~e~Al~aL~nLs~ 515 (729)
.+|.|++++.+++++++..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999998863
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.91 E-value=17 Score=43.96 Aligned_cols=119 Identities=16% Similarity=0.233 Sum_probs=82.6
Q ss_pred HHHHHcCcHHHHHHhcC---------CCHHHHHHHHHHHHHHhCCcchHHHHHhC--------CcHHHHHHHHcc----C
Q 004806 603 ARIVQAGAVKHLVDLMD---------PAAGMVDKAVAVLANLATIPDGRVAIGQE--------NGIPVLVEVVEL----G 661 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL~---------~~~~v~e~Al~~L~nLa~~~e~r~~i~~~--------g~I~~Lv~lL~s----~ 661 (729)
..+.+.++|..++++.. +..+++..|+.+|..+...++.+.+++.. .||..++..-.. .
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~ 674 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIV 674 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence 45667788888888862 23578889999999999999999888642 145555444321 4
Q ss_pred CHHHHHHHHHHHHHHhhCCHh-----------------------------------hHHHHHhCCCHHHHHHhhhCCC--
Q 004806 662 SARGKENAAAALLQLCTNSSR-----------------------------------FCSMVLQEGAVPPLVALSQSGT-- 704 (729)
Q Consensus 662 s~~~ke~A~~aL~nL~~~~~~-----------------------------------~~~~vl~~G~v~~Lv~Ll~sg~-- 704 (729)
++..+..|+.+|.|+.+..+. ....|....+|..|++|++...
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 789999999999887654311 1223344578999999998653
Q ss_pred ---HHHHHHHHHHHHHhhcC
Q 004806 705 ---PRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 705 ---~rvr~~A~~lL~~L~~~ 721 (729)
..+|.-|...|--|.++
T Consensus 755 t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARD 774 (1516)
T ss_pred CcHHHHHHHHHHHHhccccC
Confidence 45777777777666554
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=84.44 E-value=34 Score=41.71 Aligned_cols=229 Identities=15% Similarity=0.097 Sum_probs=135.5
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccHHHHH--hcCCHHH
Q 004806 455 STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAIA--NANAIEP 531 (729)
Q Consensus 455 s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~~~~~k~~I~--~~g~I~~ 531 (729)
+..+..-..|...+..++....-+...+- -+....+..+.-+ .+-++..|+.+++-.+. ...+. ..+.++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence 44555555666666655543222222211 1223333333332 34455666666655441 11111 2356777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc--CCCHHHHHHHHHHHHhcccCcHHHHHHHHcC
Q 004806 532 LIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG--NGTPRGKKDAATALFNLSIYHENKARIVQAG 609 (729)
Q Consensus 532 Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~--~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G 609 (729)
|+++....+.++.-.-+.+|+..+..+.....-.+.-..|..+.++. +.++.+...+-.++..|+....|. .-....
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g~m~e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-GPMQER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-cchHHH
Confidence 88888777788888888888888876555555555666777766654 457777777777777776633332 223455
Q ss_pred cHHHHHHhcC-CC----HHHHHHHHHHHHHHhCCcch--HHHHHhCCcHHHHHHHH-ccCCHHHHHHHHHHHHHHhhCCH
Q 004806 610 AVKHLVDLMD-PA----AGMVDKAVAVLANLATIPDG--RVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 610 ~V~~Lv~LL~-~~----~~v~e~Al~~L~nLa~~~e~--r~~i~~~g~I~~Lv~lL-~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.+|.|+..|. +. ..++..++.+|..+....+. -..+. .-+.|.+.+.. .+++.....+|-.+|..+...+.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 8999999983 22 56777788888877663322 22222 23456666665 56778888899999999888876
Q ss_pred hhHHHHHhCC
Q 004806 682 RFCSMVLQEG 691 (729)
Q Consensus 682 ~~~~~vl~~G 691 (729)
+....--.++
T Consensus 693 eq~~t~~~e~ 702 (1005)
T KOG2274|consen 693 EQLLTWHDEP 702 (1005)
T ss_pred HHHHhhccCC
Confidence 5443333333
|
|
| >KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.14 E-value=0.61 Score=50.48 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=37.5
Q ss_pred CCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 134 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 134 ~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
..+.|-.-.|-||.+=.++-|.+||||+.| |+.-... ...||+||+..
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI 346 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI 346 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence 445677778999999999999999999988 5544333 24599999865
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.00 E-value=86 Score=35.94 Aligned_cols=261 Identities=13% Similarity=0.099 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCccH
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL-~s~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
...++..+....++++...+..|++.|.+.+..-+.....-. .-.+..++.-| +..+.+|+-+|+.+|.-+...-.+.
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 356777788888888888888999999999987443222222 23344555544 4457888888888887665322111
Q ss_pred HHHHhcCCH---HHHHHHhcCCCHHHHHHHHHHHHHhccCcch--hhhhhc--cCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 521 SAIANANAI---EPLIHVLQTGSPEARENAAATLFSLSVIEDN--KIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 521 ~~I~~~g~I---~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~--k~~I~~--~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
. .+.+.+ -.+..+..+.+++++.+|..+...|+..... +..+.+ .+...+|+.-|.+.++.+-.+ ++...
T Consensus 335 ~--l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A-Cr~~~ 411 (533)
T KOG2032|consen 335 D--LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA-CRSEL 411 (533)
T ss_pred c--hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHH-HHHHH
Confidence 1 122223 3455677888899999999888888764333 233332 134455556667777765543 34433
Q ss_pred hcccCcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHH-----Hh-CCcchHHHHHhCCcHHHHHHHHccCCHHHHH
Q 004806 594 NLSIYHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLAN-----LA-TIPDGRVAIGQENGIPVLVEVVELGSARGKE 667 (729)
Q Consensus 594 nLs~~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~n-----La-~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke 667 (729)
..|.-.-.+. ...++++..++. .+. -...+.| |. .+++--..+ ......++.+.-+.+++
T Consensus 412 ~~c~p~l~rk--e~~~~~q~~ld~-----~~~--~~q~Fyn~~c~~L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~ 477 (533)
T KOG2032|consen 412 RTCYPNLVRK--ELYHLFQESLDT-----DMA--RFQAFYNQWCIQLNHIHPDILMLL-----LTEDQHIFSSSWEQVRE 477 (533)
T ss_pred HhcCchhHHH--HHHHHHhhhhHH-----hHH--HHHHHHHHHHHHHhhhCHHHHHHH-----HHhchhheecchHHHHH
Confidence 3333222222 112222222211 110 1111111 11 111110000 11112222333334454
Q ss_pred HHHHHHHHHhhCC-HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 668 NAAAALLQLCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 668 ~A~~aL~nL~~~~-~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
.|+..-.++.-+- +.++..+-..-....|..+.+...+.+++.|..+|..+..
T Consensus 478 aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 478 AAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 4444333333222 2233333222345667777778889999999888877654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.90 E-value=19 Score=42.41 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=102.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHh----cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc-
Q 004806 493 DMLHSSETKIQENAVTALLNLSINDNNKSAIAN----ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS- 567 (729)
Q Consensus 493 ~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~----~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~- 567 (729)
..|.....+++--|+-+|.-+..+...-..+.. +..+..++..+. +.+..+..++++|.|+-.+...+..+...
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~ 629 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRL 629 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344445666777777777666655433333222 246666666666 66778889999999998876666655433
Q ss_pred -CcHHHHHHhhcCCCHHHHHHHHHHHHhccc--CcHHHHHHHHcCcHHHHHHhc----CC--CHHHHHHHHHHHHHHhCC
Q 004806 568 -GAIGPLVDLLGNGTPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLVDLM----DP--AAGMVDKAVAVLANLATI 638 (729)
Q Consensus 568 -g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~--~~en~~~lv~~G~V~~Lv~LL----~~--~~~v~e~Al~~L~nLa~~ 638 (729)
-.+..++..=...+..++.+-+....|++. ...+-+ .|..+.|..++ ++ +.+..-.++.+|.+|+..
T Consensus 630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 630 ESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 122222222122245556555555666654 122211 45555555544 32 223344677889999998
Q ss_pred cchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHH
Q 004806 639 PDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAA 672 (729)
Q Consensus 639 ~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~a 672 (729)
+.....+.+.-.+..+++.+++ .+.....+.+..
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence 8888888887778888888865 333333333333
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.38 E-value=36 Score=40.49 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=75.5
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 485 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 485 ~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
.|.+..|++...+++..|+...+.+|..|+.........+-.+....|..-|.+..+.+|..|+.+|..+=.++..-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 36777788888889999999999999888653333333344566677777777888999999999999885321111
Q ss_pred hccCcHHHHHHhhcC-CCHHHHHHHHHHHHh
Q 004806 565 GRSGAIGPLVDLLGN-GTPRGKKDAATALFN 594 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~n 594 (729)
+..+...++.+++. +++++++.|+..|.+
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 12566778888875 578999887665543
|
|
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=83.17 E-value=57 Score=35.67 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cChhhHHHHHh-cCc-HHHHHHHHcCC-----C--------HHHHHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAK-HNMDNRMVIAN-CGA-INILVDMLHSS-----E--------TKIQENA 506 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~-~s~~nr~~I~~-~Ga-I~~Lv~LL~s~-----d--------~~v~e~A 506 (729)
...++.+.+.|.+.....+..+++.|..++. .+......+.. -+. .+.|..++.-. + +.++...
T Consensus 55 ~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~f 134 (330)
T PF11707_consen 55 QNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNF 134 (330)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHH
Confidence 3457888888888888888899999999888 66454444444 344 44566666321 1 2778888
Q ss_pred HHHHHHhhc--CCccHHHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHH-hccC----cchhhhhhccCcHHHHHHhhc
Q 004806 507 VTALLNLSI--NDNNKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFS-LSVI----EDNKIKIGRSGAIGPLVDLLG 578 (729)
Q Consensus 507 l~aL~nLs~--~~~~k~~I~~~-g~I~~Lv~lL~s~~~e~r~~Aa~aL~n-LS~~----~e~k~~I~~~g~I~~Lv~LL~ 578 (729)
+..+..+.. ++..+..+.+. +.+..+.+-|.....++....+.+|.. +..+ ...|..+....++..|+.+..
T Consensus 135 I~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 135 IRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc
Confidence 877666543 34456666654 678888999989889999999988885 3333 234666777789999999887
Q ss_pred CCCH----HHHHHHHHHHHhcccCcH
Q 004806 579 NGTP----RGKKDAATALFNLSIYHE 600 (729)
Q Consensus 579 ~~~~----~v~~~Al~aL~nLs~~~e 600 (729)
..+. .+...+-..|..+|.++.
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCCC
Confidence 7666 778888888888886543
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.96 E-value=0.57 Score=55.95 Aligned_cols=45 Identities=18% Similarity=0.465 Sum_probs=33.9
Q ss_pred cccCcccccc--C---ceec--CCCccccHHHHHHHHhcC-CCCCCCCCccCC
Q 004806 142 CCPLSLELMT--D---PVIV--ASGQTYERAFIKKWIDLG-LFVCPKTRQTLA 186 (729)
Q Consensus 142 ~CpI~~~lm~--d---PV~~--~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~ 186 (729)
.|+||..+.. | |--. .|.|.|--+|+-+|+..+ ..+||.||..++
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 5999998864 3 2221 267899999999999865 467999997654
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=82.71 E-value=22 Score=41.56 Aligned_cols=98 Identities=18% Similarity=0.303 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
+..+..+++++...+..+|.+|++.|-.+|+++++....+ +..|+.+|.++++.-...+-.+|..|...+
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d----- 127 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD----- 127 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-----
Confidence 5678899999999999999999999999999877766665 568999999888664444444554442111
Q ss_pred HHhcCCHHHHHHHhc---CCCHHHHHHHHHHHH
Q 004806 523 IANANAIEPLIHVLQ---TGSPEARENAAATLF 552 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~---s~~~e~r~~Aa~aL~ 552 (729)
-.+.+..|...+. +++..+|+.+...|.
T Consensus 128 --~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 128 --PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 1234555555444 566667877776664
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.49 E-value=1.1 Score=50.14 Aligned_cols=178 Identities=17% Similarity=0.090 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc----C-CccHHHHHh--cCCHHHH
Q 004806 460 TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI----N-DNNKSAIAN--ANAIEPL 532 (729)
Q Consensus 460 vq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~----~-~~~k~~I~~--~g~I~~L 532 (729)
++.+|++++.-+.-+..-....+--.++...++..|.+..-..++.+.+++.|++. + +..+..--. .-.+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 34456666665555443222333334666777777777777889999999999952 1 222222111 1123333
Q ss_pred HHHhc---CCCHHHHHHHHHHHHHhccCcch--h--hhhhccCcHHHHHHh-hcCCCHHHHHHHHHHHHhcccCcHHHHH
Q 004806 533 IHVLQ---TGSPEARENAAATLFSLSVIEDN--K--IKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSIYHENKAR 604 (729)
Q Consensus 533 v~lL~---s~~~e~r~~Aa~aL~nLS~~~e~--k--~~I~~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~~~en~~~ 604 (729)
+..-. .....++.+|..+|.|++..-+. + ......+.+..+... +-.+...++-+|+.+|.||-.++.-+-.
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 33222 22367999999999999763221 1 111112444444332 3345778999999999999876543211
Q ss_pred --HHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhC
Q 004806 605 --IVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 605 --lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~ 637 (729)
=...-+++.|..|+ ..+..++..|.++|..-..
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 12234667777777 3566777788888776655
|
|
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.45 E-value=46 Score=41.25 Aligned_cols=220 Identities=19% Similarity=0.214 Sum_probs=123.6
Q ss_pred HHHHHHHHHhcCCC--------HH----HHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC----------CCHH
Q 004806 444 TQVRKLVEDLKSTS--------LD----TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS----------SETK 501 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~--------~e----vq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s----------~d~~ 501 (729)
..+-.||..|+++- .+ ....-+..++.....+...+..++++|++.+|...|.. .|.-
T Consensus 720 qelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlc 799 (2799)
T KOG1788|consen 720 QELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLC 799 (2799)
T ss_pred HHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhh
Confidence 45556777777631 11 22334566777776677888899999888888887732 1222
Q ss_pred HHHHHHHHHHHh---h--cCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhh--hccCcHHHHH
Q 004806 502 IQENAVTALLNL---S--INDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI--GRSGAIGPLV 574 (729)
Q Consensus 502 v~e~Al~aL~nL---s--~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I--~~~g~I~~Lv 574 (729)
+...-..+|..+ + .+..|+..+-..-.-..+..+|+... |-.....|..| ...-++
T Consensus 800 vyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresg-------------llcvnler~viqlllElal---- 862 (2799)
T KOG1788|consen 800 VYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESG-------------LLCVNLERHVIQLLLELAL---- 862 (2799)
T ss_pred hHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhc-------------cceecchHHHHHHHHHHHH----
Confidence 223333444333 2 23344433322212222333332111 00111111111 001111
Q ss_pred HhhcCCCHHHHHHHHHHHHhccc-----------CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-Ccch
Q 004806 575 DLLGNGTPRGKKDAATALFNLSI-----------YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDG 641 (729)
Q Consensus 575 ~LL~~~~~~v~~~Al~aL~nLs~-----------~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~ 641 (729)
+.+..+....-..|+..+..+-. ....++++..+|++..|++.+ ...+.+.-.-+.+|..++. ++.+
T Consensus 863 evlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfn 942 (2799)
T KOG1788|consen 863 EVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFN 942 (2799)
T ss_pred HhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCc
Confidence 11222222223344444544321 234678899999999999966 6677888888899999988 6667
Q ss_pred HHHHHhCCcHHHHHHHH---ccCCHHHHHHHHHHHHHHhhCC
Q 004806 642 RVAIGQENGIPVLVEVV---ELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 642 r~~i~~~g~I~~Lv~lL---~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
.+.....|.+..|++++ .+++....-+|..++--||...
T Consensus 943 aelltS~gcvellleIiypflsgsspfLshalkIvemLgayr 984 (2799)
T KOG1788|consen 943 AELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAYR 984 (2799)
T ss_pred hhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhcc
Confidence 77777789999999887 4566666677788877777653
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=82.25 E-value=2.8 Score=28.92 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=25.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 651 IPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 651 I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
+|.+++++...++.++..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999998864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.80 E-value=19 Score=42.93 Aligned_cols=132 Identities=22% Similarity=0.216 Sum_probs=87.3
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHH-hcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~l-L~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
++=+.+-.++.+.|+-++...+.++. |+..- -..+++|..|+++ .++.+.++|..|+-+|.-++..+
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~a-lAy~G-----Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~d------ 586 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLA-LAYVG-----TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD------ 586 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHH-HHHhc-----cCchhhHHHhhcccccccchHHHHHHHHHheeeEecC------
Confidence 55566667778888888888777663 32110 0123577888887 66778999999999988765532
Q ss_pred hccCcHHHHHHhhcC-CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 565 GRSGAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
....+..|.+|.. .++-++-.|+.+|.--|....++.. +..|-.|. ++..-++..|+-+++.+..
T Consensus 587 --p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 587 --PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred --hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 2456677777764 5899999999999988776555542 23333333 3444566667777776543
|
|
| >COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.62 E-value=1.2 Score=45.33 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=48.9
Q ss_pred cccccCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCC--CCccCCCCCCcccHHH--HHHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPK--TRQTLAHTTLIPNYTV--KALIANWCE 205 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~--t~~~l~~~~l~pN~~l--~~~I~~~~~ 205 (729)
+.+|||++.-..-|++- .|.|.|||..|..+++-. ...||. |-+.+..+.++-.+.| |..|...++
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir~ 260 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIRN 260 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHHh
Confidence 35899999999999874 799999999999999843 235886 6666777777766655 444444433
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.50 E-value=20 Score=43.47 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSA 522 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~-s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~ 522 (729)
.++.....++....+.+..++.....++.. +...+..+...-.+|.+-.+..+.+..++...+..+.+++-- +..+
T Consensus 356 ~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~-- 433 (759)
T KOG0211|consen 356 LVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER-- 433 (759)
T ss_pred chhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc--
Confidence 456666677766666666666666666553 223344555556678887888777777776666665555321 1000
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
.-...++.++..++...++++.+....+..+-. ++.....+...-.++.++.+-.....+++.+....+.-++.
T Consensus 434 -ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 434 -TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL 508 (759)
T ss_pred -CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 012355666777778788888887766655433 23334444445667777777666677777777777776655
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=81.43 E-value=58 Score=34.49 Aligned_cols=214 Identities=18% Similarity=0.155 Sum_probs=122.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCc-cHHHHHh
Q 004806 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSINDN-NKSAIAN 525 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs~~~~-~k~~I~~ 525 (729)
|=..|.++++.+|..|+..|......-+... ....-+..|+.++.+ +|......++.+|..|..... .... .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--A 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--H
Confidence 4456788888999999998887665433221 222336667766644 466666666777776653222 1111 0
Q ss_pred cCCHHHHHHHhc--CCCHHHHHHHHHHHHHhccCcchhhhhhc--cCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCcH
Q 004806 526 ANAIEPLIHVLQ--TGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 526 ~g~I~~Lv~lL~--s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~e 600 (729)
...+..+.+-.. +-....|..+..+|..|... ....+.. .+.+..+++++..+ +|+....+...+..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 111222222111 12245677777777777543 2223322 36778888888755 88888877777776654222
Q ss_pred HHHHHHHcCcHHHHHHhc--------CC--CH--HHH--HHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHH
Q 004806 601 NKARIVQAGAVKHLVDLM--------DP--AA--GMV--DKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK 666 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL--------~~--~~--~v~--e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~k 666 (729)
. ...++.|.+.+ .+ +. ++. +...++...|+.++.- ..-++|.|++.|.+.++.+|
T Consensus 157 ~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 157 I------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred c------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHH
Confidence 1 22333444433 11 11 222 2233444445544322 23468999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 004806 667 ENAAAALLQLCTNS 680 (729)
Q Consensus 667 e~A~~aL~nL~~~~ 680 (729)
..+..+|..++..-
T Consensus 226 ~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 226 LDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHHC
Confidence 99999998877654
|
|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.28 E-value=1.5 Score=37.15 Aligned_cols=44 Identities=34% Similarity=0.573 Sum_probs=32.1
Q ss_pred cccCcccccc----Cceec-CCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 142 CCPLSLELMT----DPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 142 ~CpI~~~lm~----dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
.||-|+-=|. =||+- -|.|.|---||.+|+... ..||.++++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk-~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK-GVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC-CCCCCCCceeE
Confidence 4666665441 13433 589999999999999985 56999999853
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.25 E-value=2.5 Score=43.83 Aligned_cols=79 Identities=25% Similarity=0.233 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHc-------CcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchH--HHHHhCCcH
Q 004806 583 RGKKDAATALFNLSIYHENKARIVQA-------GAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGR--VAIGQENGI 651 (729)
Q Consensus 583 ~v~~~Al~aL~nLs~~~en~~~lv~~-------G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r--~~i~~~g~I 651 (729)
.-++.|+.+|+.||..+.|..-++.- ..+..|++++ ..+.-.+|.|+.+|.+||...+.. ..-.+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 45889999999999988888766653 3556666776 356677899999999999966653 333567889
Q ss_pred HHHHHHHccC
Q 004806 652 PVLVEVVELG 661 (729)
Q Consensus 652 ~~Lv~lL~s~ 661 (729)
..|+.+++..
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999754
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.94 E-value=8.7 Score=39.42 Aligned_cols=143 Identities=17% Similarity=0.148 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHhhcCCc--cHHHHHhcCCHHHHHH
Q 004806 462 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----SETKIQENAVTALLNLSINDN--NKSAIANANAIEPLIH 534 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-----~d~~v~e~Al~aL~nLs~~~~--~k~~I~~~g~I~~Lv~ 534 (729)
..|+..|.-++.+ ++.+..+.++-+--.|..+|.. ..+.++..++.+++.|..++. .-..+.....+|.+++
T Consensus 118 cnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 4678888888884 6788888887665566666643 235577888999999877643 3444556689999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc--------CcHHHHH-HhhcCCCHHHHHHHHHHHHhcccCcHHHHHH
Q 004806 535 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPLV-DLLGNGTPRGKKDAATALFNLSIYHENKARI 605 (729)
Q Consensus 535 lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~--------g~I~~Lv-~LL~~~~~~v~~~Al~aL~nLs~~~en~~~l 605 (729)
++..|+.-.+.-|+.++..+-.++..-..|... ..+..++ ++...+..+..+.++++-..||..+..|..+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 999999888888887777766666554433321 2333333 3344568899999999999999888877644
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=80.67 E-value=56 Score=38.42 Aligned_cols=164 Identities=19% Similarity=0.130 Sum_probs=85.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCC----CHHHHHHHHHHHHhccc----C
Q 004806 528 AIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNG----TPRGKKDAATALFNLSI----Y 598 (729)
Q Consensus 528 ~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~----~~~v~~~Al~aL~nLs~----~ 598 (729)
++..+.+.+.++..... .++.++..+... .... ...+..+..+++++ ...++..|+.++.+|.. .
T Consensus 358 a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~Pt-----~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~ 431 (574)
T smart00638 358 ALKFIKQWIKNKKITPL-EAAQLLAVLPHTARYPT-----EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVN 431 (574)
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcCC-----HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 56667777777653221 222222222110 1111 24567777777754 45566667777766642 2
Q ss_pred cHHHHHHHHcCcHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHc---cCCHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLMD-----PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE---LGSARGKENAA 670 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~-----~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~---s~s~~~ke~A~ 670 (729)
.+.+...+....++.|...|. .+..-+..++.+|+|+... ..+..|..++. ..+..++..|+
T Consensus 432 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av 501 (574)
T smart00638 432 TPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAI 501 (574)
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 222112222345566666551 2223334456666665531 23555555554 23578899999
Q ss_pred HHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC--CHHHHHHHHHHH
Q 004806 671 AALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALL 715 (729)
Q Consensus 671 ~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg--~~rvr~~A~~lL 715 (729)
++|..++...+. .+.+.|+.+..+. .+++|-.|..+|
T Consensus 502 ~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 502 LALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 999988765543 1344455555553 356666655544
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=80.64 E-value=55 Score=36.97 Aligned_cols=128 Identities=17% Similarity=0.204 Sum_probs=80.8
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-c--------HHHHHHHHcC----cHHHHHHhcC-CCHHHHHHHHHHHH
Q 004806 568 GAIGPLVDLLGNGTPRGKKDAATALFNLSIY-H--------ENKARIVQAG----AVKHLVDLMD-PAAGMVDKAVAVLA 633 (729)
Q Consensus 568 g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~--------en~~~lv~~G----~V~~Lv~LL~-~~~~v~e~Al~~L~ 633 (729)
..+..|+.+|.+ +.+...|+.++.-|..+ + .+..-+.+.. .+|.|++... .+...+...+.+|.
T Consensus 271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 345667777776 55667777777776654 2 2333344433 4555555553 34446677788888
Q ss_pred HHhCCcchHHHHHh-CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHH
Q 004806 634 NLATIPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA 698 (729)
Q Consensus 634 nLa~~~e~r~~i~~-~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~ 698 (729)
+|..+-.....+-+ ...+|.|++-|...+..++..+..+|..+....+.....=++ ..|+.|++
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 88875443222222 236899999999899999999999999999887643332111 34555544
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.62 E-value=1.4 Score=47.42 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=47.3
Q ss_pred cccCcccccc------CceecCCCccccHHHHHHHHhcCCCCCCCCCccC--C---CCCCcccHHHHHHHHHH
Q 004806 142 CCPLSLELMT------DPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL--A---HTTLIPNYTVKALIANW 203 (729)
Q Consensus 142 ~CpI~~~lm~------dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l--~---~~~l~pN~~l~~~I~~~ 203 (729)
.|=||.+-+. -|=++.||||+|..|+.+.+..+.-.||+||.+. . .+.|..|+.+-..|+..
T Consensus 5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred ceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 3555554443 3556779999999999999988777799999983 2 24778888888888776
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.55 E-value=99 Score=37.18 Aligned_cols=150 Identities=18% Similarity=0.144 Sum_probs=84.4
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHh-hcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCc
Q 004806 533 IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDL-LGNGTPRGKKDAATALFNLSI-YHENKARIVQAGA 610 (729)
Q Consensus 533 v~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~L-L~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~ 610 (729)
-+++.+.++-+|...+.++.. +.. --+..++|..|+.+ ..+.+.++++.|+.+|.-++. +++ .
T Consensus 525 ~el~~dkdpilR~~Gm~t~al-Ay~-----GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~ 589 (929)
T KOG2062|consen 525 KELLRDKDPILRYGGMYTLAL-AYV-----GTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------Q 589 (929)
T ss_pred HHHhcCCchhhhhhhHHHHHH-HHh-----ccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------h
Confidence 345555566666655544331 110 11223667777777 556789999999999988766 444 3
Q ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh-hCCHhhHHHH
Q 004806 611 VKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC-TNSSRFCSMV 687 (729)
Q Consensus 611 V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~-~~~~~~~~~v 687 (729)
++..+.+|. -+..++-.+.-+|+.-|.....++++ ..|--++.....-++.-|+-++.-+. ..++..+..+
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv 663 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV 663 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH
Confidence 455666773 45677777788888877766555544 22333333445556666666665543 3333222222
Q ss_pred HhCCCHHHHHHhhhCCCH
Q 004806 688 LQEGAVPPLVALSQSGTP 705 (729)
Q Consensus 688 l~~G~v~~Lv~Ll~sg~~ 705 (729)
.+....+.+++.+.+.
T Consensus 664 --~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 664 --NGFRKQLEKVINDKHE 679 (929)
T ss_pred --HHHHHHHHHHhhhhhh
Confidence 1234445555555443
|
|
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.52 E-value=0.43 Score=40.06 Aligned_cols=49 Identities=31% Similarity=0.496 Sum_probs=33.1
Q ss_pred CCcccccCccccccC-ceec-CCCccccHHHHHHHHhcC--CCCCCCCCccCC
Q 004806 138 PSDFCCPLSLELMTD-PVIV-ASGQTYERAFIKKWIDLG--LFVCPKTRQTLA 186 (729)
Q Consensus 138 p~~f~CpI~~~lm~d-PV~~-~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~ 186 (729)
|-+=+||-|.-.=.| |.++ -|-|.|-+-||.+|+... ...||.|||...
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 444455555433222 4444 589999999999999753 345999999764
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.46 E-value=43 Score=40.54 Aligned_cols=190 Identities=16% Similarity=0.157 Sum_probs=111.6
Q ss_pred HHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHH--HHHHHhcCCC-HH
Q 004806 467 ELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANANAIE--PLIHVLQTGS-PE 542 (729)
Q Consensus 467 ~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~--~Lv~lL~s~~-~e 542 (729)
.|...+..++++...+.+.|++..+...++. ....++..++..|.|++...+.+........+. .+-.++...+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7889999999999999999999999999986 467789999999999987654444433332222 3333444444 47
Q ss_pred HHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHH-HHHhc--C
Q 004806 543 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKH-LVDLM--D 619 (729)
Q Consensus 543 ~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~-Lv~LL--~ 619 (729)
.-++|+.+|..+..+.+. ....+.-+..-.++ ..++.. ......++.....+.. +..++ .
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l-----------~e~i~~---~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRNSVNELL-----------VEAISR---WLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchHHHHHHH-----------HHHhhc---cCccceeehhhhhcchhHHHHhccc
Confidence 778888888887664333 11112111111111 111111 1112222222222222 44444 2
Q ss_pred CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHH
Q 004806 620 PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAAL 673 (729)
Q Consensus 620 ~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL 673 (729)
...+..-.|++++.++.. .++....+...++++.+.++-.. ....+++.+...+
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 345566778888888887 55556666777777777665432 2344444444444
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.35 E-value=0.79 Score=49.75 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=42.6
Q ss_pred cccccCccccccC---ceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 140 DFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 140 ~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
.+.|.|++++|.| |++.|.|++|-...|+.|=..++-.||.++..+....
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 3679999999986 9999999999999999998776677999988776543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 729 | ||||
| 1t1h_A | 78 | Nmr Solution Structure Of The U Box Domain From Atp | 5e-21 | ||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 3e-11 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 6e-05 | ||
| 2c2v_S | 78 | Crystal Structure Of The Chip-Ubc13-Uev1a Complex L | 8e-05 | ||
| 2oxq_C | 80 | Structure Of The Ubch5 :chip U-Box Complex Length = | 1e-04 | ||
| 2f42_A | 179 | Dimerization And U-Box Domains Of Zebrafish C-Termi | 1e-04 | ||
| 1wa5_B | 530 | Crystal Structure Of The Exportin Cse1p Complexed W | 5e-04 | ||
| 2c1t_A | 454 | Structure Of The Kap60p:nup2 Complex Length = 454 | 8e-04 | ||
| 1un0_A | 443 | Crystal Structure Of Yeast Karyopherin (Importin) A | 9e-04 | ||
| 1ee4_A | 423 | Crystal Structure Of Yeast Karyopherin (Importin) A | 9e-04 |
| >pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 | Back alignment and structure |
|
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78 | Back alignment and structure |
|
| >pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80 | Back alignment and structure |
|
| >pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179 | Back alignment and structure |
|
| >pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530 | Back alignment and structure |
|
| >pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454 | Back alignment and structure |
|
| >pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443 | Back alignment and structure |
|
| >pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 6e-73
Identities = 52/236 (22%), Positives = 117/236 (49%), Gaps = 5/236 (2%)
Query: 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVT 508
+ + L S + Q AT + + + + + GA+ LV +L S +I + A+
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 509 ALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK-IGR 566
AL N++ + A+ +A A+ L+ +L + + + + A L +++ + +I+ +
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 567 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM-DPAAGM 624
+GA+ LV LL + + ++A AL N++ E ++ AGA+ LV L+ P +
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 196
Query: 625 VDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679
+ +A+ L+N+A+ + + A+ + + L ++ + + ++ A AL +L ++
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 3e-39
Identities = 42/203 (20%), Positives = 92/203 (45%), Gaps = 4/203 (1%)
Query: 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL-SVIEDNKIKIGRSGAIGPLVDLL 577
+ + + + + L + + + +A + S + + +GA+ LV LL
Sbjct: 4 SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63
Query: 578 GNGTPRGKKDAATALFNLSIYHENKAR-IVQAGAVKHLVDLMD-PAAGMVDKAVAVLANL 635
+ + ++A AL N++ + + ++ AGA+ LV L+ P ++ +A+ L+N+
Sbjct: 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 636 ATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVP 694
A+ + A+ +P LV+++ + + + A AL + + + V+ GA+P
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183
Query: 695 PLVALSQSGTPRAKEKAQALLSY 717
LV L S + ++A LS
Sbjct: 184 ALVQLLSSPNEQILQEALWALSN 206
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 3/165 (1%)
Query: 557 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLV 615
+ + + + L + + + A + E ++ AGA+ LV
Sbjct: 1 MRGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALV 60
Query: 616 DLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAAL 673
L+ P ++ +A+ L+N+A+ + A+ +P LV+++ + + + A AL
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Query: 674 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718
+ + + V+ GA+P LV L S + ++A LS
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
+ LV+ L S + +EA L +A + + + GA+ L + KIQ+
Sbjct: 182 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241
Query: 506 AVTALLNLSIN 516
A AL L +
Sbjct: 242 AQEALEKLQSH 252
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 238 bits (608), Expect = 3e-70
Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 8/275 (2%)
Query: 446 VRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 504
V +V +++T+ ++T R L L+ H + + I G I LV ML S +
Sbjct: 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 119
Query: 505 NAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKI 562
A+T L NL + + K A+ A ++ ++ +L + + L L+ +++K+
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179
Query: 563 KIGRSGAIGPLVDLLGNGTPRGKKDAAT-ALFNLSIYHENKARIVQAGAVKHLVDLM-DP 620
I SG LV+++ T + L LS+ NK IV+AG ++ L + DP
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 239
Query: 621 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680
+ +V + L NL+ + + E + LV+++ AA L L N+
Sbjct: 240 SQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297
Query: 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715
+ MV Q G + LV R A+
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 3e-64
Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 8/276 (2%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQE 504
+ +L + L +A + L+K ++ + ++ +V + ++++ +
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 505 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 563
L NLS + AI + I L+ +L + A TL +L + E K+
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMDP-- 620
+ +G + +V LL + L L+ + E+K I+ +G + LV++M
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
Query: 621 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680
++ VL L+ + AI + G+ L + S R +N L L +
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258
Query: 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716
++ EG + LV L S A +LS
Sbjct: 259 TK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 3e-57
Identities = 66/280 (23%), Positives = 123/280 (43%), Gaps = 11/280 (3%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQE 504
++K+V L T++ T L++LA N +++++I G LV+++ + + K+
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 204
Query: 505 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564
L LS+ +NK AI A ++ L L S +N TL +LS + +
Sbjct: 205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 262
Query: 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM---DP 620
G G +G LV LLG+ AA L NL+ + +NK + Q G ++ LV +
Sbjct: 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322
Query: 621 AAGMVDKAVAVLANLATIPD----GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676
+ + A+ L +L + + A+ G+PV+V+++ S A L++
Sbjct: 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382
Query: 677 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716
+ + ++GA+P LV L + + +
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 422
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 4e-57
Identities = 64/303 (21%), Positives = 101/303 (33%), Gaps = 35/303 (11%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
++ L L S + LR L+ G + LV +L S + +
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTC 285
Query: 506 AVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSP--EARENAAATLFSLSVI----E 558
A L NL+ N NK + IE L+ + + E A L L+ E
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345
Query: 559 DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF-NLSIYHENKARIVQAGAVKHLVDL 617
+ + + +V LL + A L NL++ N A + + GA+ LV L
Sbjct: 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 405
Query: 618 M-----------------------DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 654
+ +V+ L LA R+ I N IP+
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 465
Query: 655 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 714
V+++ + AA L +L + + EGA PL L S A A+
Sbjct: 466 VQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 524
Query: 715 LSY 717
L
Sbjct: 525 LFR 527
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-38
Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 7/215 (3%)
Query: 509 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS- 567
A++NL IN + A AI L +L AA + LS E ++ I RS
Sbjct: 1 AVVNL-INYQDD-AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 568 GAIGPLVDLLGNGT-PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMV 625
+ +V + N + A L NLS + E I ++G + LV ++ P ++
Sbjct: 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118
Query: 626 DKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 684
A+ L NL +G ++A+ G+ +V ++ + + L L +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178
Query: 685 SMVLQEGAVPPLVALSQSGTPRA-KEKAQALLSYF 718
++L G LV + ++ T +L
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 4e-29
Identities = 39/170 (22%), Positives = 59/170 (34%), Gaps = 22/170 (12%)
Query: 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ----- 503
+V+ L S +AT L N + GAI LV +L + Q
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 419
Query: 504 -----------------ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEAREN 546
E AL L+ + +N+ I N I + +L + +
Sbjct: 420 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRV 479
Query: 547 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 596
AA L L+ ++ I GA PL +LL + AA LF +S
Sbjct: 480 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 8e-67
Identities = 67/275 (24%), Positives = 116/275 (42%), Gaps = 8/275 (2%)
Query: 446 VRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 504
V +V +++T+ ++T R L L+ H + + I G I LV ML S +
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 116
Query: 505 NAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKI 562
A+T L NL ++ + K A+ A ++ ++ +L + + L L+ +++K+
Sbjct: 117 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176
Query: 563 KIGRSGAIGPLVDLLGNGTPRGKK-DAATALFNLSIYHENKARIVQAGAVKHLVDLM-DP 620
I SG LV+++ T + L LS+ NK IV+AG ++ L + DP
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 236
Query: 621 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680
+ +V + L NL+ G E + LV+++ AA L L N+
Sbjct: 237 SQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294
Query: 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715
+ MV Q G + LV R A+
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 3e-62
Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 8/276 (2%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQE 504
+ +L + L +A + L+K ++ + ++ +V + ++++ +
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 505 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 563
L NLS + AI + I L+ +L + A TL +L + E K+
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMD--P 620
+ +G + +V LL + L L+ + E+K I+ +G + LV++M
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 621 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680
++ VL L+ + AI + G+ L + S R +N L L +
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 255
Query: 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716
++ EG + LV L S A +LS
Sbjct: 256 TK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 1e-56
Identities = 66/282 (23%), Positives = 122/282 (43%), Gaps = 11/282 (3%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-TKIQE 504
++K+V L T++ T L++LA N +++++I G LV+++ + K+
Sbjct: 142 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201
Query: 505 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564
L LS+ +NK AI A ++ L L S +N TL +LS + +
Sbjct: 202 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 259
Query: 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM---DP 620
G G +G LV LLG+ AA L NL+ + +NK + Q G ++ LV +
Sbjct: 260 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 319
Query: 621 AAGMVDKAVAVLANLATIPD----GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676
+ + A+ L +L + + A+ G+PV+V+++ S A L++
Sbjct: 320 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 379
Query: 677 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718
+ + ++GA+P LV L + + +
Sbjct: 380 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 421
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 191 bits (486), Expect = 3e-52
Identities = 63/317 (19%), Positives = 110/317 (34%), Gaps = 36/317 (11%)
Query: 430 TSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAIN 489
+ A + + G+ + LV+ L S ++ A L L +N N+M++ G I
Sbjct: 252 SDAATKQEGMEGL---LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308
Query: 490 ILVDML--HSSETKIQENAVTALLNLSI----NDNNKSAIANANAIEPLIHVLQTGSPEA 543
LV + I E A+ AL +L+ + ++A+ + ++ +L S
Sbjct: 309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 368
Query: 544 RENAAATLFS-LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT------------ 590
A L L++ N + GAI LV LL ++ +
Sbjct: 369 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 428
Query: 591 ----------ALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP 639
AL L+ N+ I + V L+ P + A VL LA
Sbjct: 429 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 488
Query: 640 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 699
+ AI E L E++ + AAA L ++ + + +V +L
Sbjct: 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP---QDYKKRLSVELTSSL 545
Query: 700 SQSGTPRAKEKAQALLS 716
++ E A L
Sbjct: 546 FRTEPMAWNETADLGLD 562
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 1e-44
Identities = 46/246 (18%), Positives = 93/246 (37%), Gaps = 5/246 (2%)
Query: 477 DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND-NNKSAIANANAIEPLIHV 535
AI L +L+ + + A + LS + + + + + + ++
Sbjct: 5 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64
Query: 536 LQTGS-PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 594
+Q + E A TL +LS + + I +SG I LV +LG+ A T L N
Sbjct: 65 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124
Query: 595 LSIYHEN-KARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATI-PDGRVAIGQENGI 651
L ++ E K + AG ++ +V L++ + L LA + ++ I G
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184
Query: 652 PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 711
LV ++ + + +L++ + S +++ G + L + R +
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244
Query: 712 QALLSY 717
L
Sbjct: 245 LWTLRN 250
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 6e-36
Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 7/210 (3%)
Query: 512 NLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS-GAI 570
NL IN + A AI L +L AA + LS E ++ I RS +
Sbjct: 1 NL-INYQDD-AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 58
Query: 571 GPLVDLLGNGT-PRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKA 628
+V + N + A L NLS + E I ++G + LV ++ P ++ A
Sbjct: 59 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 118
Query: 629 VAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMV 687
+ L NL +G ++A+ G+ +V ++ + + L L + ++
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178
Query: 688 LQEGAVPPLVALSQSGTPRA-KEKAQALLS 716
L G LV + ++ T +L
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLK 208
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 2e-29
Identities = 44/214 (20%), Positives = 71/214 (33%), Gaps = 25/214 (11%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQ-- 503
+ +V+ L S +AT L N + GAI LV +L + Q
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 413
Query: 504 --------------------ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEA 543
E AL L+ + +N+ I N I + +L +
Sbjct: 414 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 473
Query: 544 RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA 603
+ AA L L+ ++ I GA PL +LL + AA LF +S +
Sbjct: 474 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS--EDKPQ 531
Query: 604 RIVQAGAVKHLVDLMDPAAGMVDK-AVAVLANLA 636
+ +V+ L ++ A L A
Sbjct: 532 DYKKRLSVELTSSLFRTEPMAWNETADLGLDIGA 565
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 3/178 (1%)
Query: 423 FVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVI 482
+PR+V + + + T L +LA+ NR+VI
Sbjct: 395 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVI 453
Query: 483 ANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPE 542
I + V +L+S IQ A L L+ + AI A PL +L + +
Sbjct: 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 513
Query: 543 ARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600
AAA LF +S ED + ++ L + A L +
Sbjct: 514 VATYAAAVLFRMS--EDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEP 569
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 3e-65
Identities = 63/308 (20%), Positives = 119/308 (38%), Gaps = 32/308 (10%)
Query: 436 RADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML 495
A G++ + + + A L L+ ++R + G + + ++L
Sbjct: 28 EAHEPGMD----QDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELL 82
Query: 496 HSSET-----------KIQENAVTALLNLSIND-NNKSAI-ANANAIEPLIHVLQTGSPE 542
++ A AL NL+ D NK+ + + + L+ L++ S +
Sbjct: 83 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 142
Query: 543 ARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIYH 599
++ A+ L +LS D +K + G++ L++ K +AL+NLS +
Sbjct: 143 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202
Query: 600 -ENKARIVQA-GAVKHLVDLMDPAA-----GMVDKAVAVLANL----ATIPDGRVAIGQE 648
ENKA I GA+ LV + + +++ +L N+ AT D R + +
Sbjct: 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262
Query: 649 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAK 708
N + L++ ++ S NA L L + + + GAV L L S
Sbjct: 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 322
Query: 709 EKAQALLS 716
+ A L
Sbjct: 323 MGSAAALR 330
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 2e-44
Identities = 49/272 (18%), Positives = 104/272 (38%), Gaps = 19/272 (6%)
Query: 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR-MVIANCGAINILVDMLHSSET 500
++ S+ +R A L L ++ N+ + + G + LV L S
Sbjct: 82 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 141
Query: 501 KIQENAVTALLNLSI--NDNNKSAIANANAIEPLIHVLQTGS-PEARENAAATLFSLSVI 557
+Q+ + L NLS + N+K + +++ L+ ++ + L++LS
Sbjct: 142 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201
Query: 558 -EDNKIKIGR-SGAIGPLVDLLGNGTPRG----KKDAATALFNLSIY----HENKARIVQ 607
+NK I GA+ LV L + + L N+S +++ + +
Sbjct: 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 261
Query: 608 AGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARG 665
++ L+ + + +V A L NL+ P + A+ + +L ++
Sbjct: 262 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 321
Query: 666 KENAAAALLQLCTNSS---RFCSMVLQEGAVP 694
+AAAL L N + +++ ++P
Sbjct: 322 AMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 151 bits (382), Expect = 2e-40
Identities = 51/242 (21%), Positives = 106/242 (43%), Gaps = 18/242 (7%)
Query: 429 STSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLA-KHNMDNRMVIANCGA 487
+ +A L ++ +R LV LKS S D Q+ + LR L+ + +++++ + G+
Sbjct: 112 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 171
Query: 488 INILVDML-HSSETKIQENAVTALLNLSI-NDNNKSAIANAN-AIEPLIHVL----QTGS 540
+ L++ + ++ ++AL NLS NK+ I + A+ L+ L QT +
Sbjct: 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231
Query: 541 PEARENAAATLFSLSVI----EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS 596
E+ L ++S + ED++ + + + L+ L + + +A L+NLS
Sbjct: 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291
Query: 597 IYH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT----IPDGRVAIGQENG 650
+ +++ + GAV L +L+ + + A L NL + +
Sbjct: 292 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351
Query: 651 IP 652
+P
Sbjct: 352 LP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 6e-40
Identities = 47/289 (16%), Positives = 101/289 (34%), Gaps = 31/289 (10%)
Query: 458 LDTQREATAELRLLAKH----NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 513
+ L LL + A+ ++ + + + AV L+ L
Sbjct: 1 MGHHHHHHM-LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 59
Query: 514 SINDNNKSAIANANAIEPLIHVLQTG-----------SPEARENAAATLFSLSVIED-NK 561
S ++ ++ A+ ++ + +LQ S R A L +L+ + NK
Sbjct: 60 SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 119
Query: 562 IKIGRS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIYH--ENKARIVQAGAVKHLVDLM 618
+ G + LV L + + ++ A+ L NLS +K + + G+VK L++
Sbjct: 120 ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179
Query: 619 DPA--AGMVDKAVAVLANLATI-PDGRVAIGQENG-IPVLVEVV----ELGSARGKENAA 670
+ ++ L NL+ + + I +G + LV + + + E+
Sbjct: 180 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 239
Query: 671 AAL---LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716
L L + ++ + + L+ +S + A L
Sbjct: 240 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 288
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-30
Identities = 39/224 (17%), Positives = 79/224 (35%), Gaps = 22/224 (9%)
Query: 516 NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVD 575
+ A+ ++ + + A L LS E+++ + G + + +
Sbjct: 21 ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 80
Query: 576 LLGNGTPRGKKD-----------AATALFNLSIY-HENKARIVQ-AGAVKHLVDLMD-PA 621
LL A AL NL+ NKA + G ++ LV + +
Sbjct: 81 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140
Query: 622 AGMVDKAVAVLANLATI--PDGRVAIGQENGIPVLVE-VVELGSARGKENAAAALLQLCT 678
+ +VL NL+ + + + + + L+E +E+ ++ +AL L
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200
Query: 679 NSSRFC-SMVLQEGAVPPLVAL----SQSGTPRAKEKAQALLSY 717
+ + + +GA+ LV SQ+ T E +L
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 244
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 229 bits (584), Expect = 8e-65
Identities = 66/275 (24%), Positives = 121/275 (44%), Gaps = 8/275 (2%)
Query: 446 VRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 504
V +V +++T+ ++T R + L L+ H+ + + I G I LV+ML S +
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSPVDSVLF 252
Query: 505 NAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKI 562
+A+T L NL ++ + K A+ A ++ ++ +L + + L L+ +++K+
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 312
Query: 563 KIGRSGAIGPLVDLLGNGTPRGKK-DAATALFNLSIYHENKARIVQAGAVKHLVDLM-DP 620
I SG LV+++ T + L LS+ NK IV+AG ++ L + DP
Sbjct: 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 372
Query: 621 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680
+ +V + L NL+ + + E + LV+++ AA L L N+
Sbjct: 373 SQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430
Query: 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715
+ MV Q G + LV R A+
Sbjct: 431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 4e-56
Identities = 66/281 (23%), Positives = 123/281 (43%), Gaps = 11/281 (3%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQE 504
++K+V L T++ T L++LA N +++++I G LV+++ + + K+
Sbjct: 278 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 337
Query: 505 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564
L LS+ +NK AI A ++ L L S +N TL +LS + +
Sbjct: 338 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 395
Query: 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM---DP 620
G G +G LV LLG+ AA L NL+ + +NK + Q G ++ LV +
Sbjct: 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 455
Query: 621 AAGMVDKAVAVLANLATIPDG----RVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676
+ + A+ L +L + + A+ G+PV+V+++ S A L++
Sbjct: 456 REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 515
Query: 677 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717
+ + ++GA+P LV L + + +
Sbjct: 516 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 556
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 193 bits (491), Expect = 3e-52
Identities = 64/303 (21%), Positives = 102/303 (33%), Gaps = 35/303 (11%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
++ L L S + LR L+ G + LV +L S + +
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTC 418
Query: 506 AVTALLNLSINDN-NKSAIANANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDNKI 562
A L NL+ N+ NK + IE L+ + + E A L L+ +
Sbjct: 419 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAE 478
Query: 563 K----IGRSGAIGPLVDLLGNGTPRGKKDAATALF-NLSIYHENKARIVQAGAVKHLVDL 617
+ + +V LL + A L NL++ N A + + GA+ LV L
Sbjct: 479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538
Query: 618 MDPA-----------------------AGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 654
+ A +V+ L LA R+ I N IP+
Sbjct: 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLF 598
Query: 655 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 714
V+++ + AA L +L + + EGA PL L S A A+
Sbjct: 599 VQLLYSPIENIQRVAAGVLCELAQDK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 657
Query: 715 LSY 717
L
Sbjct: 658 LFR 660
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 4e-31
Identities = 49/257 (19%), Positives = 81/257 (31%), Gaps = 31/257 (12%)
Query: 446 VRKLVEDL--KSTSLDTQREATAELRLLAKHNMDNRMV---IANCGAINILVDMLHSSET 500
+ LV + D A LR L + D M + + ++V +LH
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502
Query: 501 KIQENAVTALL-NLSINDNNKSAIANANAIEPLIHVLQTGSPEAR--------------- 544
A L+ NL++ N + + AI L+ +L + +
Sbjct: 503 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 562
Query: 545 -------ENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597
E L L+ N+I I I V LL + ++ AA L L+
Sbjct: 563 VRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 622
Query: 598 YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE 656
E I GA L +L+ G+ A AVL ++ D + + +
Sbjct: 623 DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE--DKPQDYKKRLSVELTSS 680
Query: 657 VVELGSARGKENAAAAL 673
+ E L
Sbjct: 681 LFRTEPMTWNETGDLGL 697
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-26
Identities = 44/282 (15%), Positives = 76/282 (26%), Gaps = 14/282 (4%)
Query: 440 SGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE 499
SGI + L + ++ + + I+ +
Sbjct: 33 SGIHSGATTTAPSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADID-----GQYAM 87
Query: 500 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED 559
T+ Q + +A + L S + I
Sbjct: 88 TRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNL------INY 141
Query: 560 NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLM 618
+ AI L LL + AA + LS ++ I++ V +V M
Sbjct: 142 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 201
Query: 619 DPA--AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676
L NL+ +G +AI + GIP LV ++ +A L L
Sbjct: 202 QNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNL 261
Query: 677 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718
+ V G + +VAL + L
Sbjct: 262 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 3e-61
Identities = 62/308 (20%), Positives = 117/308 (37%), Gaps = 28/308 (9%)
Query: 436 RADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML 495
E + + + + A L L+ ++R + G + + ++L
Sbjct: 140 WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELL 198
Query: 496 HSSET-----------KIQENAVTALLNLSIND-NNKSAI-ANANAIEPLIHVLQTGSPE 542
++ A AL NL+ D NK+ + + + L+ L++ S +
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258
Query: 543 ARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY- 598
++ A+ L +LS D +K + G++ L++ K +AL+NLS +
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318
Query: 599 HENKARIVQA-GAVKHLVDLMDPAA-----GMVDKAVAVLANL----ATIPDGRVAIGQE 648
ENKA I GA+ LV + + +++ +L N+ AT D R + +
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378
Query: 649 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAK 708
N + L++ ++ S NA L L + + + GAV L L S
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 438
Query: 709 EKAQALLS 716
+ A L
Sbjct: 439 MGSAAALR 446
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 9e-45
Identities = 48/256 (18%), Positives = 98/256 (38%), Gaps = 16/256 (6%)
Query: 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNR-MVIANCGAINILVDMLHSSET 500
++ S+ +R A L L ++ N+ + + G + LV L S
Sbjct: 198 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257
Query: 501 KIQENAVTALLNLSI--NDNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVI 557
+Q+ + L NLS + N+K + +++ L+ + ++ + L++LS
Sbjct: 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317
Query: 558 -EDNKIKIGR-SGAIGPLVDLLGNGTPRG----KKDAATALFNLSIY----HENKARIVQ 607
+NK I GA+ LV L + + L N+S +++ + +
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377
Query: 608 AGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARG 665
++ L+ + + +V A L NL+ P + A+ + +L ++
Sbjct: 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 437
Query: 666 KENAAAALLQLCTNSS 681
+AAAL L N
Sbjct: 438 AMGSAAALRNLMANRP 453
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 2e-38
Identities = 49/324 (15%), Positives = 108/324 (33%), Gaps = 50/324 (15%)
Query: 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL----------- 491
++ S + + A+A L + D++ +++L
Sbjct: 81 GNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCW 140
Query: 492 -------------VDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQT 538
+ + + AV L+ LS ++ ++ A+ ++ + +LQ
Sbjct: 141 EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQV 200
Query: 539 G-----------SPEARENAAATLFSLSVI-EDNKIKIGRS-GAIGPLVDLLGNGTPRGK 585
S R A L +L+ NK + G + LV L + + +
Sbjct: 201 DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260
Query: 586 KDAATALFNLSIYH--ENKARIVQAGAVKHLVDLMDPA--AGMVDKAVAVLANLATI-PD 640
+ A+ L NLS +K + + G+VK L++ + ++ L NL+ +
Sbjct: 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320
Query: 641 GRVAIGQENG-IPVLVEVV----ELGSARGKENAAAAL---LQLCTNSSRFCSMVLQEGA 692
+ I +G + LV + + + E+ L L + ++ +
Sbjct: 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380
Query: 693 VPPLVALSQSGTPRAKEKAQALLS 716
+ L+ +S + A L
Sbjct: 381 LQTLLQHLKSHSLTIVSNACGTLW 404
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 6e-36
Identities = 54/346 (15%), Positives = 112/346 (32%), Gaps = 60/346 (17%)
Query: 431 SGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINI 490
S + T+V + L + + + L ++ + D+ + + G + +
Sbjct: 16 PRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMS-SSQDSCISMRQSGCLPL 74
Query: 491 LVDMLHSSE------------TKIQENAVTALLNLSINDNNKSAIANANAIEPL------ 532
L+ +LH ++ + + A AL N+ + + + L
Sbjct: 75 LIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRA 134
Query: 533 -------------------IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPL 573
+ + A L LS E+++ + G + +
Sbjct: 135 YCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAI 194
Query: 574 VDLLGNGTPRGKKD-----------AATALFNLSIYH-ENKARIVQ-AGAVKHLVDLMD- 619
+LL A AL NL+ NKA + G ++ LV +
Sbjct: 195 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS 254
Query: 620 PAAGMVDKAVAVLANLATIPDG--RVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQL 676
+ + +VL NL+ D + + + + L+E E+ ++ +AL L
Sbjct: 255 ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 314
Query: 677 CTNSSRFC-SMVLQEGAVPPLVAL----SQSGTPRAKEKAQALLSY 717
+ + + +GA+ LV SQ+ T E +L
Sbjct: 315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-29
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
Query: 446 VRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDML----HSSE 499
V+ L+E + T + + L L+ H +N+ I GA+ LV L ++
Sbjct: 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347
Query: 500 TKIQENAVTALLNLSI----NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 555
I E+ L N+S N++++ + N ++ L+ L++ S NA TL++LS
Sbjct: 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407
Query: 556 V-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR 604
++ + GA+ L +L+ + +A AL NL K +
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 40/289 (13%), Positives = 90/289 (31%), Gaps = 53/289 (18%)
Query: 490 ILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQ------------ 537
++ +L T +++ LL +S + ++ ++ + + LI +L
Sbjct: 33 MVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNS 92
Query: 538 TGSPEARENAAATLFSLSVIEDN-------------------------KIKIGRSGAIGP 572
GS EAR A+A L ++ + + + + +
Sbjct: 93 RGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQ 152
Query: 573 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM------------DP 620
+ + A L LS E++ + + G ++ + +L+
Sbjct: 153 DKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHY 212
Query: 621 AAGMVDKAVAVLANLATIPDG--RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 678
+ + A L NL + + LV ++ S ++ A+ L L
Sbjct: 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 272
Query: 679 NSSRFCSMVLQE-GAVPPLV-ALSQSGTPRAKEKAQALLSYFRNQRHGN 725
+ L+E G+V L+ + + + L N
Sbjct: 273 RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 2e-60
Identities = 42/196 (21%), Positives = 91/196 (46%), Gaps = 4/196 (2%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
+ ++V+ L S + A +L +A + + + GA+ LV +L S +I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 506 AVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 563
A+ AL N++ + A+ +A A+ L+ +L + + + + A L +++ +
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR-IVQAGAVKHLVDLM-DPA 621
+ +GA+ LV LL + + ++A AL N++ + + + +AGA++ L L
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 622 AGMVDKAVAVLANLAT 637
+ +A L L +
Sbjct: 194 EKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 1e-41
Identities = 41/207 (19%), Positives = 104/207 (50%), Gaps = 5/207 (2%)
Query: 478 NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVL 536
+ + + +V L+S + + ++A+ L ++ + A+ +A A+ L+ +L
Sbjct: 4 SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63
Query: 537 QTGSPEARENAAATLFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595
+ + + + A L +++ + +I+ + +GA+ LV LL + + ++A AL N+
Sbjct: 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 596 S-IYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIP 652
+ +E ++ AGA+ LV L+ P ++ +A+ L+N+A+ + + A+ + +
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183
Query: 653 VLVEVVELGSARGKENAAAALLQLCTN 679
L ++ + + ++ A AL +L ++
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-26
Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Query: 557 IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLV 615
+ + + +V L + + + A L ++ E ++ AGA+ LV
Sbjct: 1 MRGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV 60
Query: 616 DLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAAL 673
L+ P ++ +A+ L+N+A+ + A+ +P LV+++ + + + A AL
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Query: 674 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKA 711
+ + + V+ GA+P LV L S + ++A
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 6e-09
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
+ LV+ L S + +EA L +A + + + GA+ L + KIQ+
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 199
Query: 506 AVTALLNLSIN 516
A AL L +
Sbjct: 200 AQEALEKLQSH 210
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 1e-56
Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 7/278 (2%)
Query: 446 VRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 504
V + VE LK + Q E+ L +A N ++ GA+ I +++L S +QE
Sbjct: 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125
Query: 505 NAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSP-EARENAAATLFSLSVIEDNKI 562
AV AL N++ + + + + N + PL+ + + NA L +L +
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185
Query: 563 KIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-D 619
+ + S + L LL DA AL LS ++ ++ AG + LV+L+
Sbjct: 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245
Query: 620 PAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 678
+V A+ + N+ T D I + + L+ ++ K+ A + +
Sbjct: 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305
Query: 679 NSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716
+ V+ P L+++ Q+ R +++A ++
Sbjct: 306 GNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 8e-41
Identities = 57/279 (20%), Positives = 109/279 (39%), Gaps = 7/279 (2%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQE 504
V +E L S D Q +A L +A + R + +C + L+ + + +
Sbjct: 109 VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTR 168
Query: 505 NAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 563
NAV AL NL + A + + L +L + +A L LS ++KI+
Sbjct: 169 NAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQ 228
Query: 564 -IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMD-P 620
+ +G LV+LL + + A A+ N+ I+ A++ L+ L+ P
Sbjct: 229 AVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP 288
Query: 621 AAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679
+ +A ++N+ + N P L+ +++ R ++ AA A+ +
Sbjct: 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348
Query: 680 SSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717
S +++ G + PL L + + A L
Sbjct: 349 GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN 387
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 47/235 (20%), Positives = 99/235 (42%), Gaps = 5/235 (2%)
Query: 432 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 491
G + + + + L L + D +A L L+ D + + G L
Sbjct: 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239
Query: 492 VDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAAT 550
V++L ++ K+ A+ A+ N+ + +D I N +A++ L+H+L + ++ A T
Sbjct: 240 VELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299
Query: 551 LFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH--ENKARIVQ 607
+ +++ +I+ + + L+ +L R +K+AA A+ N + E +V+
Sbjct: 300 ISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE 359
Query: 608 AGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG 661
G +K L DL+ + +V A+ L N+ + + P + E
Sbjct: 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAY 414
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-26
Identities = 47/217 (21%), Positives = 76/217 (35%), Gaps = 8/217 (3%)
Query: 509 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN---KIKIG 565
A+ NN +I ++ + SPE + +A L E N I
Sbjct: 2 AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61
Query: 566 RSGAIGPLVDLLGNGT-PRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLM-DPAA 622
G + V+ L + ++A L N+ S ++QAGAV ++L+
Sbjct: 62 TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121
Query: 623 GMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVV-ELGSARGKENAAAALLQLCTNS 680
+ ++AV L N+A R + N +P L+++ + NA AL LC
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181
Query: 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717
S + L L A LSY
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSY 218
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 175 bits (444), Expect = 2e-47
Identities = 58/282 (20%), Positives = 106/282 (37%), Gaps = 11/282 (3%)
Query: 446 VRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 504
+ K V L K+ Q E+ L +A + + + GAI + +L S I E
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 505 NAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPE-----ARENAAATLFSLSVIE 558
AV AL N++ + + AI+PL+ +L N TL +L +
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221
Query: 559 DNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVD 616
+ + + LV LL + P D+ A+ L+ E +V+ G V LV
Sbjct: 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281
Query: 617 LM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674
L+ +V A+ + N+ T D + + V ++ ++ A +
Sbjct: 282 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341
Query: 675 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716
+ V+ G VP LV + + +++A ++
Sbjct: 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 383
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-32
Identities = 46/280 (16%), Positives = 103/280 (36%), Gaps = 13/280 (4%)
Query: 452 DLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALL 511
DL + + R T L L ++ + A + LV +LH ++ ++ ++ A+
Sbjct: 198 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257
Query: 512 NLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGA 569
L+ + + + L+ +L A + ++ D K+ +GA
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 317
Query: 570 IGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMDPAAGMVDK- 627
+ LL N +K+A + N+ + + ++V G V LV ++ A K
Sbjct: 318 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 377
Query: 628 AVAVLANLAT--IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT------N 679
A + N + + V + I L+ ++ + + A+ +
Sbjct: 378 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 437
Query: 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS-YF 718
+ + M+ + G + + AL + + + L+ YF
Sbjct: 438 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-23
Identities = 33/202 (16%), Positives = 77/202 (38%), Gaps = 11/202 (5%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
V +LV+ L +T L A + + + + + GA+ + +L + +T IQ+
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335
Query: 506 AVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK--I 562
A + N+ + + + N + L+ VL + ++ AA + + + + +
Sbjct: 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV 395
Query: 563 KIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR-------IVQAGAVKHLV 615
+ G I PL++LL + + A+ N+ E I + G + +
Sbjct: 396 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE 455
Query: 616 DLMD-PAAGMVDKAVAVLANLA 636
L + ++ ++
Sbjct: 456 ALQRHENESVYKASLNLIEKYF 477
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 99.3 bits (247), Expect = 5e-22
Identities = 47/226 (20%), Positives = 85/226 (37%), Gaps = 11/226 (4%)
Query: 503 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK- 561
+ T + ++ D + ++E ++ + + + E++ A L E
Sbjct: 33 SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92
Query: 562 -IKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLM 618
I R+G I V LG + ++A AL N+ S E +V GA+ + L+
Sbjct: 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 619 D-PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARG-----KENAAA 671
P A + ++AV L N+A R + + I L+ ++ + N
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212
Query: 672 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717
L LC N + + E +P LV L P + +SY
Sbjct: 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 1e-43
Identities = 61/301 (20%), Positives = 125/301 (41%), Gaps = 7/301 (2%)
Query: 425 PRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIA 483
+S + + S ++ ++ ++ + L S + Q AT + R +L++ + V+
Sbjct: 68 DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI 127
Query: 484 NCGAINILVDMLHSSE-TKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSP 541
G + LV+ + ++ +Q A AL N+ S + +A+A+ I +L TGS
Sbjct: 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV 187
Query: 542 EARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600
E +E A L +++ D + + + A+ P++ L + P + A L NL +
Sbjct: 188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247
Query: 601 NKARIVQ-AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENG-IPVLVEV 657
+ + A+ L L+ + A ++ L+ P + + LVE+
Sbjct: 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 307
Query: 658 VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717
+ S + A A+ + T + +V+ G +P L L S K++A +S
Sbjct: 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367
Query: 718 F 718
Sbjct: 368 I 368
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 3e-41
Identities = 54/280 (19%), Positives = 109/280 (38%), Gaps = 8/280 (2%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
V ++ L + S++ + +A L +A + D R + C A+ ++ + +S++ +
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 234
Query: 506 AVTALLNLSINDNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564
A L NL + A+ L ++ + E +A + LS I+
Sbjct: 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQA 294
Query: 565 G-RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLMD-PA 621
LV+LL + + + A A+ N+ ++ AG + L L+ P
Sbjct: 295 VIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK 354
Query: 622 AGMVDKAVAVLANL-ATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC--- 677
+ +A ++N+ A + A+ N IP LV+++E+ + K+ A A+
Sbjct: 355 ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414
Query: 678 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717
++ +G + PL L + R E L
Sbjct: 415 LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 155 bits (392), Expect = 2e-40
Identities = 56/279 (20%), Positives = 116/279 (41%), Gaps = 6/279 (2%)
Query: 446 VRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 504
V +LVE ++ + Q EA L +A V+ + A+ + + +L++ +++E
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191
Query: 505 NAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIK 563
A+ AL N++ + + + + NA+EP++ + + P A TL +L + +
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251
Query: 564 IGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLS-IYHENKARIVQAGAVKHLVDLM-DP 620
S A+ L L+ + DA A+ LS E ++ K LV+L+
Sbjct: 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311
Query: 621 AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679
+ + A+ + N+ T + +P L ++ K+ A + +
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371
Query: 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718
++ V+ +PPLV L + + K++A +S
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 2e-26
Identities = 54/297 (18%), Positives = 109/297 (36%), Gaps = 38/297 (12%)
Query: 432 GAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINIL 491
G + + D S + + L + + S +T +A + L+ + + + L
Sbjct: 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRL 304
Query: 492 VDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAAT 550
V++L T +Q A+ A+ N+ ND + NA + L +L + ++ A T
Sbjct: 305 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT 364
Query: 551 LFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR----I 605
+ +++ + + + I PLV LL + KK+A A+ N S + +
Sbjct: 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL 424
Query: 606 VQAGAVKHLVDLMDPA-AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 664
V G +K L DL++ A +++ + L N+
Sbjct: 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENIL---------------------------- 456
Query: 665 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS-YFRN 720
+ A N + + + G + + Q+ + EKA ++ YF
Sbjct: 457 --KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 2e-16
Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 5/184 (2%)
Query: 540 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599
P + SV D + + + L + + + A +
Sbjct: 59 IPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSRE 118
Query: 600 EN--KARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVL 654
++QAG V LV+ M + + +A L N+A+ + + +P+
Sbjct: 119 HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF 178
Query: 655 VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 714
++++ GS KE A AL + +S+ + VLQ A+ P++ L S P A
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238
Query: 715 LSYF 718
LS
Sbjct: 239 LSNL 242
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 160 bits (405), Expect = 8e-43
Identities = 52/318 (16%), Positives = 96/318 (30%), Gaps = 36/318 (11%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
+ K V+ L S Q ++ + + + G I LVD+L S +Q+
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 506 AVTALLNLSI-NDNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIK 563
A AL NL + NK N I + +L +TG+ E ++ L++LS ++ K +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 564 IGRSGAIGPLVDLL---GNGTPRGK-------------KDAATALFNLSIYHENKARIVQ 607
+ A+ L D + +G G +A L NLS + +
Sbjct: 124 LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182
Query: 608 -AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG----- 661
+G + L+ + + N + ++
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242
Query: 662 -----------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 710
S + N L + + + A+ + L A +
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302
Query: 711 AQALLSYFRNQRHGNAGR 728
A A G
Sbjct: 303 ACAGALQNLTASKGLMSS 320
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 101 bits (251), Expect = 9e-23
Identities = 23/174 (13%), Positives = 62/174 (35%), Gaps = 15/174 (8%)
Query: 444 TQVRKLVEDLKSTSLDTQREATAE-LRLLAKHN-----MDNRMVIANCGAINILVDMLHS 497
+R + + + D EA A L+ L ++++ + + +L S
Sbjct: 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342
Query: 498 SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSP------EARENAAATL 551
+ + + + L N+S + + N + +L + + + +A T+
Sbjct: 343 GNSDVVRSGASLLSNMSRHPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTV 401
Query: 552 FSLSVI-EDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHENKA 603
+L + S + +++L + +P+ + A L ++ E +
Sbjct: 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-22
Identities = 38/294 (12%), Positives = 93/294 (31%), Gaps = 32/294 (10%)
Query: 454 KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 513
+ + AT LR L+ + + + G I+ L+ + + + + + +
Sbjct: 153 EVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCM 212
Query: 514 SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAA----------------TLFSLSVI 557
+ N + + +++ L
Sbjct: 213 CVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN 272
Query: 558 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAAT-ALFNLSIYHENKAR------IVQAGA 610
+ S AI ++L+G +A AL NL+ + ++
Sbjct: 273 PKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG 332
Query: 611 VKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK--- 666
+ + L+ + +V ++L+N++ P +G P + ++ +
Sbjct: 333 LPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSE 391
Query: 667 ---ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLS 716
+A + L + + + ++ L +S +P+A E A+ LLS
Sbjct: 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 93.0 bits (230), Expect = 5e-20
Identities = 34/251 (13%), Positives = 77/251 (30%), Gaps = 23/251 (9%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
V + L + S E R L + + ++ G + S+ + N
Sbjct: 208 VENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC------FSNKSDKMMNNN 261
Query: 506 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGS-PEARENAAATLFSLSV------IE 558
L N + +++AI ++++ E A L +L+
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321
Query: 559 DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM 618
+++ + + + LL +G + A+ L N+S + + + L+
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV-FPEVTRLL 380
Query: 619 DPAAGMVDK-------AVAVLANLATI-PDGRVAIGQENGIPVLVEVVELG-SARGKENA 669
G A + NL P + + ++ + S + E A
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440
Query: 670 AAALLQLCTNS 680
L + ++
Sbjct: 441 RLLLSDMWSSK 451
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 440 SGIETQVRKLVEDL--KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 497
R L S S D A +R L + +N ++++ S
Sbjct: 371 QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS 430
Query: 498 SET-KIQENAVTALLNLSINDNNKSAI 523
S + K E A L ++ + + +
Sbjct: 431 SASPKAAEAARLLLSDMWSSKELQGVL 457
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 5e-42
Identities = 67/380 (17%), Positives = 129/380 (33%), Gaps = 64/380 (16%)
Query: 400 EFPSRVMETRSRSQVIWRRPS--ERFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTS 457
+ E Q W + ER + + + + ++ +++ L
Sbjct: 2 SPEFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRL 61
Query: 458 LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-- 515
+ A A L+ L N + + I +LV +L + ++ A AL N+S
Sbjct: 62 DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121
Query: 516 NDNNKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLV 574
+ +NK AI N + + L+ +L+ + E TL++LS + K++I A+ L
Sbjct: 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALT 180
Query: 575 DLL---GNGTPRGKKDA---------------ATALFNLSIYHEN--KARIVQAGAVKHL 614
D + +G R + A L N+S + G V L
Sbjct: 181 DEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDAL 240
Query: 615 VDLM-------DPAAGMVDKAVAVLANL--------------------------ATIPDG 641
+ ++ D + +V+ V +L NL + G
Sbjct: 241 IFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARG 300
Query: 642 RVAIGQENGIPVLVEVVELGSARG-KENAAAALLQLCTN----SSRFCSMVLQEGAVPPL 696
+ Q + + + +++ E +A A+ LC S + QE A+ +
Sbjct: 301 YELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360
Query: 697 VALSQSGTPRAKEKAQALLS 716
L + R + A L
Sbjct: 361 ADLLTNEHERVVKAASGALR 380
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 105 bits (261), Expect = 1e-23
Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 17/180 (9%)
Query: 446 VRKLVEDLK-STSLDTQREATAELRLLAKHNM----DNRMVIANCGAINILVDMLHSSET 500
VR + LK S + + ++ L R + A++ + D+L +
Sbjct: 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHE 369
Query: 501 KIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG--------SPEARENAAATLF 552
++ + A AL NL+++ NK I +AI L+ L G S + + T+
Sbjct: 370 RVVKAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN 428
Query: 553 SLSVI-EDNKIKIGRSGAIGPLVDLL--GNGTPRGKKDAATALFNLSIYHENKARIVQAG 609
+ + K+ + I LV + GN + + + AA L + Y E + + + G
Sbjct: 429 EVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 53/285 (18%), Positives = 99/285 (34%), Gaps = 50/285 (17%)
Query: 439 LSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS 497
SG E + + + LR ++ + R + C G ++ L+ ++ +
Sbjct: 187 HSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246
Query: 498 S------ETKIQENAVTALLNLS--------------------------INDNNKSAIAN 525
++K+ EN V L NLS +
Sbjct: 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ 306
Query: 526 ANAIEPLIHVLQTGS-PEARENAAATLFSLS-----VIEDNKIKIGRSGAIGPLVDLLGN 579
+ I +L+ P E +A + +L + + + A+ + DLL N
Sbjct: 307 PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366
Query: 580 GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDL---------MDPAAGMVDKAVA 630
R K A+ AL NL++ NK I + A+ +LV + + V +
Sbjct: 367 EHERVVKAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILN 425
Query: 631 VLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674
+ + + + + GI LV + + G+ KE AAAL+
Sbjct: 426 TINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALV 470
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 3e-05
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 2/106 (1%)
Query: 457 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLS 514
S DT + + N++ + I LV + S K A L +
Sbjct: 416 SEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475
Query: 515 INDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN 560
+ + + V + ++ + + +L +I+ N
Sbjct: 476 GYKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRN 521
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 8e-40
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Query: 65 SEILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRL- 123
S ++++ L + LI A +L + +Q++ + + +M S + +
Sbjct: 29 SIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMDMD 88
Query: 124 -VMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTR 182
+ + + IP C +S ELM +P I SG TY+R I++ + P TR
Sbjct: 89 ELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTR 148
Query: 183 QTLAHTTLIPNYTVKALIANWCELN 207
L LIPN +K +I + + N
Sbjct: 149 SPLTQDQLIPNLAMKEVIDAFIQEN 173
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 2e-38
Identities = 43/74 (58%), Positives = 56/74 (75%)
Query: 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 196
P F CP+SLELM DPVIV++GQTYER+ I+KW+D G CPK+++TL H L PNY +
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 197 KALIANWCELNNVK 210
K+LIA WCE N ++
Sbjct: 65 KSLIALWCESNGIE 78
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 135 bits (340), Expect = 5e-36
Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 30/226 (13%)
Query: 440 SGIETQVRKLVEDLKSTSLD--TQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 497
+ +E + + V L++ + A ++ + R + I L+ +L
Sbjct: 4 ADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV 63
Query: 498 SETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLS 555
+Q AL NL +++NK +A N + L+ VL QT E ++ L++LS
Sbjct: 64 QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123
Query: 556 VIEDNKIKIGRSGAIGPLVDLL---GNGTPRGKKD-------------AATALFNLSIYH 599
+ K + A+ L + + +G P G L N+S
Sbjct: 124 SNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182
Query: 600 -ENKARIVQA-GAVKHLVDLM-------DPAAGMVDKAVAVLANLA 636
+ + + + G + LV + P + V +L NL+
Sbjct: 183 ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 3e-11
Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 47/176 (26%)
Query: 529 IEPLIHVLQTGS--PEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGK 585
+E + +L+ P AA + + + + ++ + I L+ LL +
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 586 KDAATALFNLSIYH-ENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVA 644
+ AL NL +NK + +
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELN----------------------------------- 94
Query: 645 IGQENGIPVLVEVVELGSARG-KENAAAALLQLCTNSSRFCSMVLQEGAVPPLVAL 699
G+P L++V++ K+ L L +N ++ A+ L
Sbjct: 95 -----GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL--KNLMITEALLTLTEN 143
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 6e-08
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 608 AGAVKHLVDLM---DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSA 663
++ V ++ + A + + + R + Q GI L++++++ +
Sbjct: 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66
Query: 664 RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA-LSQSGTPRAKEKAQALLS 716
+ AL L + V + VP L+ L Q+ K++ LL
Sbjct: 67 DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLW 120
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 144 bits (363), Expect = 8e-36
Identities = 48/292 (16%), Positives = 96/292 (32%), Gaps = 8/292 (2%)
Query: 433 AETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILV 492
T +L + L E ++ Q V+AN G L
Sbjct: 442 VTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501
Query: 493 DMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLF 552
+ + QE L + + + ++ L+ + G+ + + +A L
Sbjct: 502 ALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALA 561
Query: 553 SLSVIEDNKIKIGRSG---AIGPLVDLLGNG-TPRGKKDAATALFNL-SIYHENKARIVQ 607
+ + + ++ I PL++LL T ++ AL NL S+ + RI++
Sbjct: 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK 621
Query: 608 AGAVKHLVDLMDPAAGMVDK-AVAVLANLATIPDGRVAIGQENG-IPVLVEVVELGSARG 665
V + + + + A L NL D N + L + E
Sbjct: 622 EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEET 681
Query: 666 KENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQALLS 716
A AL + + S + C +L + L L + +P + + ++
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 2e-33
Identities = 51/320 (15%), Positives = 103/320 (32%), Gaps = 40/320 (12%)
Query: 438 DLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS 497
+ R+ + D +R A L L +I + +I+ L+D+
Sbjct: 374 AALKLAEACRRFLIKP-GKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG 432
Query: 498 SETKIQENAVTALLNLS---------------------------------INDNNKSAIA 524
VT +NL + + +A
Sbjct: 433 GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA 492
Query: 525 NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG 584
N L + +T S ++E A L ++ +++ + K+ + G + L+ + GT +G
Sbjct: 493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKG 552
Query: 585 KKDAATALFNLSIYHENKARIVQAG---AVKHLVDLMDPAAGMVDK--AVAVLANLATIP 639
K+ A AL + I + ++ L++L+ ++ ++ L NLA++
Sbjct: 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612
Query: 640 DG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVA 698
+ R I +E G+ + + AA L L + V L
Sbjct: 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLAL 672
Query: 699 LSQSGTPRAKEKAQALLSYF 718
L + L+
Sbjct: 673 LCEDEDEETATACAGALAII 692
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 91.4 bits (226), Expect = 4e-19
Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 5/214 (2%)
Query: 426 RIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQR-EATAELRLLAKHNMDNRMVIAN 484
RI T E +R L+ L+ + E+ L LA N R I
Sbjct: 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK 621
Query: 485 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANAN-AIEPLIHVLQTGSPEA 543
++ + L + A L NL ++++ N ++ L + + E
Sbjct: 622 EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEET 681
Query: 544 RENAAATLFSLSVIEDNKIK--IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-E 600
A L ++ + + + + + L L+ N +P + + N+ E
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE 741
Query: 601 NKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLAN 634
++ + ++ L L KA V
Sbjct: 742 IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQ 775
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 5e-13
Identities = 20/148 (13%), Positives = 49/148 (33%), Gaps = 2/148 (1%)
Query: 430 TSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD-NRMVIANCGAI 488
+ G +V+ L + +T L ++ ++ ++A +
Sbjct: 651 VMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWL 710
Query: 489 NILVDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENA 547
+IL ++ + +Q + +LN+ + + + + +E L + Q +
Sbjct: 711 DILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAR 770
Query: 548 AATLFSLSVIEDNKIKIGRSGAIGPLVD 575
L+ E +I A P V
Sbjct: 771 EVATQCLAAAERYRIIERSDNAEIPDVF 798
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 2e-05
Identities = 20/180 (11%), Positives = 52/180 (28%), Gaps = 5/180 (2%)
Query: 540 SPEARENAAATLFSL--SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL-S 596
+ + A+ L + ++ D + D L K A+ L +
Sbjct: 217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLN 276
Query: 597 IYHENKARIVQA-GAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLV 655
+ ++V G ++ ++ + + + A+ + E G+ +L
Sbjct: 277 GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILK 336
Query: 656 EVVELGSARGKENAAAALLQLCTNS-SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQAL 714
+ + + A L +L + +GA L + + +
Sbjct: 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIR 396
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-28
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 196
P +F PL LMTDPV + SG +R+ I + + P RQTL + L P +
Sbjct: 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPT-DPFNRQTLTESMLEPVPEL 84
Query: 197 KALIANWCE 205
K I W
Sbjct: 85 KEQIQAWMR 93
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-28
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 196
P +F PL LMTDPV + SG +R+ I + + P RQ L + L P +
Sbjct: 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPT-DPFNRQMLTESMLEPVPEL 69
Query: 197 KALIANWCELNNVK 210
K I W
Sbjct: 70 KEQIQAWMREKQSS 83
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 5e-25
Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 66 EILVKVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGE----------AEFMDQMISL 115
++L + S Q I AVA ++ N +A + EF++++++
Sbjct: 808 DLLKALTTVYINLSEQSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNF 867
Query: 116 VTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG 174
+ ++ ++ + +P +F PL +M DPVI+ S +R+ IK + L
Sbjct: 868 ANKAEEQRKADEEEDLEYG-DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LS 925
Query: 175 LFVCPKTRQTLAHTTLIPNYTVKALIANWCE 205
P R L + PN ++ I + +
Sbjct: 926 DSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 9e-25
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 126 IKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQ-TYERAFIKKWIDLGLFVCPKTRQT 184
++Q + + +F P+ LM DPV++ S + T +R+ I + + P R
Sbjct: 8 LQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT-DPFNRSP 66
Query: 185 LAHTTLIPNYTVKALIANWCELN 207
L + PN +K I W
Sbjct: 67 LTMDQIRPNTELKEKIQRWLAER 89
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 97.0 bits (241), Expect = 3e-22
Identities = 41/251 (16%), Positives = 84/251 (33%), Gaps = 8/251 (3%)
Query: 434 ETRADLSGIETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILV 492
+ ++ L + + + + + + A L L NMDN +++LV
Sbjct: 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLV 87
Query: 493 D-MLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQT-GSPEARENAAA 549
L + ++ A + + + A+ L+ +L R A
Sbjct: 88 GRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALF 147
Query: 550 TLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQ 607
+ L E ++ R L+ + + K +A L NL + H E+K +
Sbjct: 148 AISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS 207
Query: 608 AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGK 666
G V+ LV L+ + + + L +L T V +E + + + +
Sbjct: 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ 267
Query: 667 ENAAAALLQLC 677
L+ C
Sbjct: 268 HEEYQEELEFC 278
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 1e-18
Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 7/210 (3%)
Query: 516 NDNNKSAIANANAIEPLIHVL--QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPL 573
+ KS + + P Q + RE A L L DN + + L
Sbjct: 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLL 86
Query: 574 VD-LLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM--DPAAGMVDKAV 629
V L G + AA + S + +++ GA++ L+ L+ D + KA+
Sbjct: 87 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146
Query: 630 AVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL 688
++ L G + + +G VL+ ++ + K +A L L +
Sbjct: 147 FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206
Query: 689 QEGAVPPLVALSQSGTPRAKEKAQALLSYF 718
G V LVAL ++ E L
Sbjct: 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSL 236
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 3e-21
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 6/144 (4%)
Query: 70 KVAESLSLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLV----- 124
++ + L S LI A +L+E E + + + + HD+ +
Sbjct: 132 RIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191
Query: 125 MIKQSQI-CSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQ 183
+ Q IP C +S ELM +P I SG TY+R I++ + P TR
Sbjct: 192 LFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRS 251
Query: 184 TLAHTTLIPNYTVKALIANWCELN 207
L LIPN +K +I + N
Sbjct: 252 PLTQEQLIPNLAMKEVIDAFISEN 275
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 1e-15
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 138 PSDFCCPLSLELMTDPVIVAS-GQTYERAFIKKWID-----LGLFVCPKT---RQTLAHT 188
S F CP++ E M PV G TYE I + I+ CP+ + +
Sbjct: 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64
Query: 189 TLIPNYTVKALIANWCELNNVKLPDPTKTA 218
LI + ++ I N + + +
Sbjct: 65 DLIQDEALRRAIENHNKKRHRHSESGPSSG 94
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 2e-15
Identities = 40/261 (15%), Positives = 87/261 (33%), Gaps = 35/261 (13%)
Query: 474 HNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLI 533
+ N I I+ L +H+ ++ V + N++ + N +A A++ ++
Sbjct: 445 ILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIIL 504
Query: 534 HVLQTGSP---EARENAAATLFSLSVIEDNKI---KIGRSGAIGPLVDLLGNGTPRGKK- 586
L R L + + + + K AI L +LL TP
Sbjct: 505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNP 564
Query: 587 -------------DAATALFNLSIYHEN------KARIVQAGAVKHLVDLMDPAAGMVDK 627
+A AL NL+ + K + + +LM + +
Sbjct: 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624
Query: 628 A-VAVLANLATIPDGRVAIGQENGIP-------VLVEVVELGSARGKENAAAALLQLCTN 679
+ + +++N+ + P A P +LV++++L + AA + T
Sbjct: 625 STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684
Query: 680 SSRFCSMVLQ-EGAVPPLVAL 699
+L + + + +
Sbjct: 685 IPLIAKELLTKKELIENAIQV 705
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 1e-09
Identities = 29/246 (11%), Positives = 77/246 (31%), Gaps = 33/246 (13%)
Query: 503 QENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 562
+ I N+ I I L + SP ++ +++++ ++
Sbjct: 433 DKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP 492
Query: 563 KIGRSGAIGPLVDLLGNGTPRGKKD---AATALFNLSIY---HENKARIVQAGAVKHLVD 616
++ + GA+ +++ L N G+ AL + I+ + A+ L +
Sbjct: 493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFE 552
Query: 617 LMDPAAGMVD---------------KAVAVLANLATIPDG------RVAIGQENGIPVLV 655
L+ + + D +A+ L NLA+ + + + +
Sbjct: 553 LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612
Query: 656 EVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG------AVPPLVALSQSGTPRAKE 709
++ + + + + + ++ + LV L Q ++
Sbjct: 613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQR 672
Query: 710 KAQALL 715
A+
Sbjct: 673 AVAAIF 678
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 36/247 (14%), Positives = 81/247 (32%), Gaps = 50/247 (20%)
Query: 488 INILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA-NANAIEPLIHVLQTGS------ 540
I ++ + E +V AL LS+ + K I N + E L+ ++++
Sbjct: 336 SEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLY 395
Query: 541 ----------------------------------PEARENAAATLFSLSVIEDNKIKIGR 566
P A + A ++ N+ I R
Sbjct: 396 GLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR 455
Query: 567 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMDPAAGMVD 626
+ I L + N +P K+ ++N++ ++ Q GAVK +++ + + +
Sbjct: 456 TELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGE 515
Query: 627 K----AVAVLANLATIPDGRVAIGQE---NGIPVLVEVVELGSARGKENAAAALLQLCTN 679
L + + + + N IP L E+ L + ++ +
Sbjct: 516 PIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFEL--LPRSTPVDDNPLHNDEQIKL 573
Query: 680 SSRFCSM 686
+ + ++
Sbjct: 574 TDNYEAL 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 1e-13
Identities = 92/714 (12%), Positives = 190/714 (26%), Gaps = 248/714 (34%)
Query: 25 ELSSTSLELCSQKIKHMEYEQTSSLIKE----AIRDQVDGVAPSSEI--LVKVAESLS-- 76
+ + + + I + +E + + ++D + EI ++ +++S
Sbjct: 8 DFETGEHQYQYKDILSV-FED--AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 77 ------LRSNQEILIEAVALEKLKENAE------QAEKAGEAEFMDQMISLVTRMHDRLV 124
L S QE +++ E L+ N + + E+ + I R+++
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 125 MIKQSQICSPVPIPSDFCCPLSL-----ELMTDPVIVASGQTYERAFIKKWIDLGLFVCP 179
+ + + P L L EL ++ G LG
Sbjct: 125 VFAKYNVSRLQPY-------LKLRQALLELRPAKNVLIDG------------VLG---SG 162
Query: 180 KTRQTLAHTTLIPNYTVKALIAN---WCELNNVKLP--------------DPTKTASLNQ 222
KT +A +Y V+ + W L N P DP T+ +
Sbjct: 163 KT--WVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 223 PSPLFVHADSNAPRDSHIFPHTRGNQQ--IM-----PESTRSTNSPAKNLVSLNNTREGS 275
S + + S + ++ ++ + N K L++ TR
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT---TR--- 273
Query: 276 SPLHPHSTSETSYSGIAGNGPGLDIARISLTSSEDRFSNSEERSMELV------------ 323
+ + ISL + E L+
Sbjct: 274 ------------FKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKYLDCRPQDLP 319
Query: 324 -----GQP---SM-SKSIKEFPATIDTSEQSSHIHNRTASASSVLSNLNLSQGDANETSE 374
P S+ ++SI++ AT D + +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHV-------------------------NCDK 354
Query: 375 LSNHSDASGEGKLESQPATTMRRE-------PE---FPSRVMETRSRSQVIWRRPSERFV 424
L+ ++S L R+ P P+ ++ +IW + V
Sbjct: 355 LTTIIESS----LNVLEPAEYRKMFDRLSVFPPSAHIPTILLS------LIWFDVIKSDV 404
Query: 425 PRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN 484
+V+ KL + S L+ K ++ + I
Sbjct: 405 MVVVN------------------KLHK--YS--------------LVEKQPKESTISI-- 428
Query: 485 CGAINILVDMLHS--SETKIQENAVTALLNLSINDNNKSAIANANAIEPLI--------- 533
S E K++ AL ++ N +++ + P
Sbjct: 429 -----------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 534 --HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLG----------- 578
H+ PE +E KI+ + A G +++ L
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 579 --NGTPRGKKDAATALFNLS--IYHENKARIVQAGAVKHLVDLMDPAAGMVDKA 628
R L + + +++ LM + ++A
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA-------LMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 6e-05
Identities = 47/435 (10%), Positives = 122/435 (28%), Gaps = 149/435 (34%)
Query: 1 MSKIRTSGLDI-MLQ-----LKSSLQYFPGELSSTSLELCSQK------IKHMEYEQTSS 48
+ + + MLQ + + S+ L + S + +K YE
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--C 246
Query: 49 LI-------KEAIR------------------DQVDGVAPSSEILVKVAESLSLRSNQEI 83
L+ +A D + + L + +L+ + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 84 LIEAVALEKLKENAEQAEK------AGEAEFMDQMISLVTR----MHDRLVMIKQSQI-- 131
L++ + + ++ + + AE + ++ D+L I +S +
Sbjct: 307 LLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 132 ------------CS--P--VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWI---- 171
S P IP+ + +++ V+V + ++ + ++K
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 172 ----DLGLFVCPKTRQTLA-HTTLIPNYTVKALIANWCELNNVKLPDPT----------- 215
+ L + K A H +++ +Y + + ++ +P
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHY---NIPKTFD--SDDLIPPYLDQYFYSHIGHH 480
Query: 216 -KTASLNQPSPLF--------------VHADS--NAPRD------------SHIFPHTRG 246
K + LF H + NA +I +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 247 NQQIMPESTRSTNSPAKNLVSLNNTREGSSPLHPHSTSETSYSGIAGNGPGLDIARISLT 306
++++ +NL+ ++ D+ RI+L
Sbjct: 541 YERLVNAILDFLPKIEENLIC-----------SKYT----------------DLLRIALM 573
Query: 307 SSEDRFSNSEERSME 321
+ ++ + ++
Sbjct: 574 AEDEAIFEEAHKQVQ 588
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 6e-12
Identities = 48/235 (20%), Positives = 84/235 (35%), Gaps = 52/235 (22%)
Query: 487 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEAREN 546
+ + + L ++ A AL I + A+EPLI L+ R
Sbjct: 20 KVEMYIKNLQDDSYYVRRAAAYAL----------GKIGDERAVEPLIKALKDEDAWVRRA 69
Query: 547 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV 606
AA L +IG A+ PL+ L + ++ AA AL +I
Sbjct: 70 AADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVAL----------GQIG 109
Query: 607 QAGAVKHLVD-LMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARG 665
AV+ L+ L D + A L IG E + L++ ++
Sbjct: 110 DERAVEPLIKALKDEDWFVRIAAAFALGE----------IGDERAVEPLIKALKDEDGWV 159
Query: 666 KENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720
+++AA AL ++ E + L+++GT A++ A L ++
Sbjct: 160 RQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-11
Identities = 48/232 (20%), Positives = 79/232 (34%), Gaps = 52/232 (22%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
V +++L+ S +R A L I + A+ L+ L + ++
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALG-----------KIGDERAVEPLIKALKDEDAWVRRA 69
Query: 506 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 565
A AL I + A+EPLI L+ R++AA L +IG
Sbjct: 70 AADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVAL----------GQIG 109
Query: 566 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGM 624
A+ PL+ L + + AA AL I AV+ L+ + D +
Sbjct: 110 DERAVEPLIKALKDEDWFVRIAAAFAL----------GEIGDERAVEPLIKALKDEDGWV 159
Query: 625 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676
A L IG E + ++ E G+ ++ A L
Sbjct: 160 RQSAADALGE----------IGGERVRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-11
Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 139 SDFCCPLSLELMTDPVI-VASGQTYERAFIKKWI-DLGLFVCPKTRQTLAHTTLIPNYT 195
S C +S ++ PV+ S +E++ +++++ D G P T + L+ ++
Sbjct: 2 SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLSIEEIVEIVP 58
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 48/229 (20%), Positives = 79/229 (34%), Gaps = 52/229 (22%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
V +++L+ S +R A L I + A+ L+ L + ++
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALG-----------KIGDERAVEPLIKALKDEDAWVRRA 64
Query: 506 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 565
A AL I + A+EPLI L+ R++AA L +IG
Sbjct: 65 AADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALG----------QIG 104
Query: 566 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGM 624
A+ PL+ L + + AA AL I AV+ L+ + D +
Sbjct: 105 DERAVEPLIKALKDEDWFVRIAAAFAL----------GEIGDERAVEPLIKALKDEDGWV 154
Query: 625 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAAL 673
A L IG E + ++ E G+ ++ A L
Sbjct: 155 RQSAADALGE----------IGGERVRAAMEKLAETGTGFARKVAVNYL 193
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 6e-09
Identities = 45/210 (21%), Positives = 69/210 (32%), Gaps = 58/210 (27%)
Query: 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTP 582
+ +E I LQ S R AA L KIG A+ PL+ L +
Sbjct: 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYAL----------GKIGDERAVEPLIKALKDEDA 59
Query: 583 RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG 641
++ AA AL +I AV+ L+ + D + A L
Sbjct: 60 WVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ------- 102
Query: 642 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLV---- 697
IG E + L++ ++ + AA AL ++ E AV PL+
Sbjct: 103 ---IGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALK 148
Query: 698 ------------ALSQSGTPRAKEKAQALL 715
AL + G R + + L
Sbjct: 149 DEDGWVRQSAADALGEIGGERVRAAMEKLA 178
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 | Back alignment and structure |
|---|
Score = 61.1 bits (147), Expect = 2e-10
Identities = 20/193 (10%), Positives = 61/193 (31%), Gaps = 9/193 (4%)
Query: 25 ELSSTSLELCSQKIKHMEYEQTSSLIKEAIRDQVDGVAPSSEILVKVAESLSLRSNQEIL 84
+++ST L + + + +++ +K+ + D L + + L
Sbjct: 65 DITSTYKLLSTYESESNSFDEHIKDLKKNFKQSSDACPQID--LSTWDKYRTGELTAPKL 122
Query: 85 IEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVMIKQSQICSPVPIPS---DF 141
E E A + + + + + ++ + I +
Sbjct: 123 SELYLNMPTPEPATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIEL 182
Query: 142 CCPLSLELMTDPVIVAS-GQTYERAFIKKWIDL-GLFVCPKT--RQTLAHTTLIPNYTVK 197
CP++ + P+I ++R I+ ++ CP+ Q ++ + + ++
Sbjct: 183 TCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIME 242
Query: 198 ALIANWCELNNVK 210
+ +
Sbjct: 243 LRCKIAKMKESQE 255
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 5e-09
Identities = 52/292 (17%), Positives = 106/292 (36%), Gaps = 35/292 (11%)
Query: 431 SGAETRADLSGIETQVRKLVEDL-KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAIN 489
G + ET ++KL + + ST LD +R A L+ L+K R+ + A+
Sbjct: 9 GGQSAGPQHTEAET-IQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVGI-QAME 63
Query: 490 ILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAA 549
L+ +L D + S I A++ L +++ E E +
Sbjct: 64 HLIHVLQ-------------------TDRSDSEIIGY-ALDTLYNIISNDEEEEVEENST 103
Query: 550 TLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR---IV 606
+ +I I + + L+ LL + L +L + + +V
Sbjct: 104 RQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILV 163
Query: 607 QAGAVKHLVDLMDPAAGMV-DKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVEL-GSA 663
V L+DL+ + ++ + V +L L + + EN L++++ G++
Sbjct: 164 SPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNS 223
Query: 664 RGK---ENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQ 712
G E+ L L N++ + + + + + G + AQ
Sbjct: 224 DGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQ 275
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 7e-05
Identities = 30/187 (16%), Positives = 72/187 (38%), Gaps = 8/187 (4%)
Query: 362 LNLSQGDANETSELSNHSDASGEGKLESQPATTMRREPEFPSRVMETRSRSQVIWRRPSE 421
N+ D E E ++ + L SQ ++ E + ++ R P
Sbjct: 87 YNIISNDEEEEVEENSTRQSE---DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGV 143
Query: 422 RFVPRIVSTSGAETRADLSGIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV 481
+ + ++ G + + + V +L++ L + + + L+ L + N + +
Sbjct: 144 KLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKI 203
Query: 482 IANCGAINILVDMLH----SSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVL 536
+A A L+D++ S + E+ + L NL N++N++ + I+ +
Sbjct: 204 VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF 263
Query: 537 QTGSPEA 543
+ G +
Sbjct: 264 EVGDENS 270
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 3e-08
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 133 SPVPIPSDFCCPLSLELMTDPVIVAS-GQTYERAFIKK-WIDLGLFVCPKTRQTLAHT-T 189
PIP + C + ++MTD V++ G +Y I+ ++ CP Q
Sbjct: 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 65
Query: 190 LIPNYTVKALIANW 203
LI N ++ + N+
Sbjct: 66 LIANKFLRQAVNNF 79
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 33/245 (13%), Positives = 70/245 (28%), Gaps = 54/245 (22%)
Query: 487 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEAREN 546
+ L +L + + ++ L +A+ I + R+
Sbjct: 24 NDDELFRLLDDHNSLKRISSARVL----------QLRGGQDAVRLAIEFCSDKNYIRRDI 73
Query: 547 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV 606
A L G I + +D + ++ +K+ V
Sbjct: 74 GAFIL----------------GQI---------KICKKCEDNVFNIL-NNMALNDKSACV 107
Query: 607 QAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRV---------AIGQENGIPVLVEV 657
+A A++ K V A V I + IP+L+ +
Sbjct: 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINL 167
Query: 658 VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717
++ + + AA A+ ++ V + Q + +A LSY
Sbjct: 168 LKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSY 218
Query: 718 FRNQR 722
+++R
Sbjct: 219 RKDKR 223
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 32/147 (21%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
+ + + +R+ + L + A L++ L + + +I+
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGA 61
Query: 506 AVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 565
A + + A+EPLI +L+ S R AA +L +IG
Sbjct: 62 AAWII----------GNFQDERAVEPLIKLLEDDSGFVRSGAARSL----------EQIG 101
Query: 566 RSGAIGPLVDLLGNGTPRGKKDAATAL 592
+ L GT +K A L
Sbjct: 102 GERVRAAMEKLAETGTGFARKVAVNYL 128
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 32/150 (21%)
Query: 525 NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRG 584
+++ + P + + R + + L ++G A PL++ L N R
Sbjct: 10 HSSGLVPRGSHMADENKWVRRDVSTAL----------SRMG-DEAFEPLLESLSNEDWRI 58
Query: 585 KKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 643
+ AA + AV+ L+ L+ D + + A L
Sbjct: 59 RGAAAWII----------GNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQ--------- 99
Query: 644 AIGQENGIPVLVEVVELGSARGKENAAAAL 673
IG E + ++ E G+ ++ A L
Sbjct: 100 -IGGERVRAAMEKLAETGTGFARKVAVNYL 128
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 5e-07
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 133 SPVPIPSDFCCPLSLELMTDPVIVAS-GQTYERAFIKK-WIDLGLFVCPKTRQTL 185
PIP + C + ++MTD V++ G +Y I+ ++ CP Q
Sbjct: 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 4e-06
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TLIPNYTVK 197
F C EL+ PV + +++ +F CP R L +IPN ++
Sbjct: 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQ 136
Query: 198 ALI 200
L+
Sbjct: 137 TLL 139
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 4e-06
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 133 SPVPIPSDFCCPLSLELMTDPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TL 190
SP + S+ CP+ L+++ + + + I + G CP R+ L +L
Sbjct: 47 SPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106
Query: 191 IPNYTVKALIA 201
P+ ALI+
Sbjct: 107 RPDPNFDALIS 117
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-06
Identities = 18/67 (26%), Positives = 27/67 (40%)
Query: 134 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193
P+ S + CP+ L + + V G + +A I K I CP + L L P+
Sbjct: 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71
Query: 194 YTVKALI 200
K I
Sbjct: 72 NFAKREI 78
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 7e-06
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TLIPNY 194
+ F C EL+ P+ + + + +F CP R L + + N
Sbjct: 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQ 107
Query: 195 TVKALI 200
++ ++
Sbjct: 108 PLQTVL 113
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-05
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 137 IPSDFCCPLSLELMTDPVIVAS-GQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYT 195
I F C + +E + D + + + I++W+ CP R L L+
Sbjct: 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78
Query: 196 VKALIANWCELNNVKLPDPTK 216
+ + +L+ ++L TK
Sbjct: 79 AEEVTQ---QLDTLQLCSLTK 96
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 134 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193
P+ S + CP+ L + + V G + +A I K I CP + L L P+
Sbjct: 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71
Query: 194 YTVKALIAN 202
K I +
Sbjct: 72 NFAKREILS 80
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 2e-04
Identities = 4/50 (8%), Positives = 16/50 (32%)
Query: 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTL 185
+ + C ++ P G + + + + C ++++
Sbjct: 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 136 PIPSDFCCPLSLELMTDPVIVAS-GQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 194
I C + E +I+ Y I+K++ CP T+ L N
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKNNR 76
Query: 195 TVKALIANW 203
+ L+ +
Sbjct: 77 ILDELVKSL 85
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 4e-04
Identities = 8/77 (10%), Positives = 19/77 (24%)
Query: 134 PVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193
+ + + C ++ P G Y + + G C + I
Sbjct: 25 GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISI 84
Query: 194 YTVKALIANWCELNNVK 210
+ + V+
Sbjct: 85 LESSSAFPDNAARREVE 101
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 5e-04
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 133 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI- 191
+P S+ C + +E++ +PV + T + + ++ CP R+ ++ T
Sbjct: 8 DAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYH 67
Query: 192 --PNYTVKALIANWCE 205
N V + +
Sbjct: 68 TRRNSLVNVELWTIIQ 83
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTLIPNYTVK 197
CP+ LEL+ +PV + + + K ++ G CP + + +L +
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80
Query: 198 ALI 200
L+
Sbjct: 81 QLV 83
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 6e-04
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWID-----LGLFVCPKTRQTLAHTTLIPNY 194
+ CP+ LEL+ +PV ++ RA I + G CP R L PN
Sbjct: 19 EVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78
Query: 195 TVKALI 200
V ++
Sbjct: 79 HVANIV 84
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
Score = 37.9 bits (88), Expect = 7e-04
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 133 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192
+ P + C + L+ PV + + +K LG C RQ + L
Sbjct: 8 NTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPEDFLDS 66
Query: 193 NY 194
Sbjct: 67 GP 68
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.97 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.96 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.95 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.95 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.95 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.95 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.95 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.95 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.94 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.94 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.94 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.93 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.93 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.93 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.93 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.93 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.93 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.93 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.92 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.92 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.92 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.91 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.9 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.9 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.89 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.89 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.89 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.87 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 99.87 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.86 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.86 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.86 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.86 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.86 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 99.85 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 99.85 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 99.84 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.8 | |
| 3m62_A | 968 | Ubiquitin conjugation factor E4; armadillo-like re | 99.79 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 99.79 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.78 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.77 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.76 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 99.74 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 99.61 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 99.59 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 99.5 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 99.48 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.46 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 99.46 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 99.4 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.37 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 99.36 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 99.35 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 99.35 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 99.34 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 99.33 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 99.33 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 99.32 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 99.31 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 99.31 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 99.3 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 99.3 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 99.29 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 99.28 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 99.28 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.26 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 99.24 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.23 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.22 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.2 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 99.2 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 99.19 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 99.19 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.19 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 99.19 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 99.17 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 99.11 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 99.1 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.05 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 99.04 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 99.02 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.01 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 99.0 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 99.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.99 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 98.95 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 98.95 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 98.91 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.9 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.9 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.86 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.81 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.8 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.8 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.77 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 98.77 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 98.76 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 98.76 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 98.75 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 98.73 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 98.72 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 98.68 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 98.67 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 98.66 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 98.64 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 98.59 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 98.58 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.58 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.52 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.48 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.47 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 98.47 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 98.45 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.4 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.4 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.37 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.34 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 98.33 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 98.3 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.29 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.23 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 98.23 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.22 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 98.17 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.16 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 98.11 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 98.08 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.04 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.0 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 98.0 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.98 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.96 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 97.95 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.92 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 97.85 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.83 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.8 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.77 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.77 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 97.67 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.64 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.54 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.46 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.45 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.41 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.33 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.19 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.04 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.98 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.68 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 96.44 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 96.41 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.23 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 96.15 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.07 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 95.9 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 95.89 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 95.65 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 95.49 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 95.3 | |
| 3i2d_A | 371 | E3 SUMO-protein ligase SIZ1; signal transduction, | 95.06 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 94.95 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 94.59 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 94.33 | |
| 2jun_A | 101 | Midline-1; B-BOX, TRIM, ring finger, alternative s | 94.25 | |
| 4fo9_A | 360 | E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom | 93.93 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 93.35 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 93.04 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 92.94 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 92.94 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 92.29 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 92.06 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 90.95 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 90.7 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 90.24 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 89.93 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 89.86 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 89.74 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 89.46 | |
| 3pwf_A | 170 | Rubrerythrin; non heme iron peroxidases, oxidative | 88.16 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 86.57 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 86.09 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 84.85 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 84.16 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 83.9 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 82.71 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 82.49 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 82.36 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 80.85 | |
| 2kkx_A | 102 | Uncharacterized protein ECS2156; methods developme | 80.71 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 80.61 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 80.41 |
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=272.51 Aligned_cols=264 Identities=22% Similarity=0.274 Sum_probs=237.4
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCc-cHHHHHhc
Q 004806 459 DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDN-NKSAIANA 526 (729)
Q Consensus 459 evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-----------~d~~v~e~Al~aL~nLs~~~~-~k~~I~~~ 526 (729)
..+.+|+++|.+++.+ +++|..+.+.|+++.|+.+|.. .++.++++|+++|.||+.+.. +|..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3456899999999996 7999999999999999999952 246799999999999998754 77777655
Q ss_pred -CCHHHHHHHhcCCCHHHHHHHHHHHHHhccC--cchhhhhhccCcHHHHHHhh-cCCCHHHHHHHHHHHHhccc-CcHH
Q 004806 527 -NAIEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSI-YHEN 601 (729)
Q Consensus 527 -g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs~-~~en 601 (729)
|+|+.|+.+|++++.++++.|+++|.||+.. +++|..|++.|+|+.|+++| ++++..+++.|+.+|+||+. .+++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 5699999999999999999999999999984 57899999999999999975 66789999999999999999 7789
Q ss_pred HHHHH-HcCcHHHHHHhcC-CCH----HHHHHHHHHHHHHhC----CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 004806 602 KARIV-QAGAVKHLVDLMD-PAA----GMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 671 (729)
Q Consensus 602 ~~~lv-~~G~V~~Lv~LL~-~~~----~v~e~Al~~L~nLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~ 671 (729)
+..++ ..|+++.|+.+|. .+. .+++.|+++|.||+. .++.+..+.+.|+++.|+++|.+++..++++|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 98888 7999999999994 222 589999999999995 8889999999999999999999999999999999
Q ss_pred HHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcC
Q 004806 672 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 672 aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~ 723 (729)
+|+||+..+++.+..+++.|+++.|+.+++++++++++.|.++|++|.....
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999998888899999999999999999999999999999999999987543
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=282.44 Aligned_cols=278 Identities=23% Similarity=0.271 Sum_probs=243.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I 523 (729)
.++.|+++|+++++++|..|+..|++|+.+++.++..+.+.|+||.|+.+|+++++.+++.|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 378999999999999999999999999998888898999999999999999999999999999999999986 8899999
Q ss_pred HhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc--------CC--------CHHHHH
Q 004806 524 ANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG--------NG--------TPRGKK 586 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~--------~~--------~~~v~~ 586 (729)
++.|+|++|+++|. +++++++++|+++|+||+..+++|..|++ |+++.|+.+|. ++ +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999899999999 99999999993 22 456777
Q ss_pred HHHHHHHhcccCcHHHHHHHHc-CcHHHHHHhcC-------CCHHHHHHHHHHHHHHhCC--------------------
Q 004806 587 DAATALFNLSIYHENKARIVQA-GAVKHLVDLMD-------PAAGMVDKAVAVLANLATI-------------------- 638 (729)
Q Consensus 587 ~Al~aL~nLs~~~en~~~lv~~-G~V~~Lv~LL~-------~~~~v~e~Al~~L~nLa~~-------------------- 638 (729)
.|+++|.||+..++++..+++. |+++.|+.+|. .+..+++.++.+|.||+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998999999997 99999999994 3556889999999999742
Q ss_pred -------------------------------cchHHHHHhCCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCHh----
Q 004806 639 -------------------------------PDGRVAIGQENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSSR---- 682 (729)
Q Consensus 639 -------------------------------~e~r~~i~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL~~~~~~---- 682 (729)
+.+.+.+++.++++.|+.+|.. .++..++.|+++|+|||.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 1233445566778999999975 5799999999999999987643
Q ss_pred h-HHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcC
Q 004806 683 F-CSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 683 ~-~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~ 723 (729)
. +..+.++|+++.|+.++.+++.++++.|.++|++|....+
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 2 2344468999999999999999999999999999987543
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=283.00 Aligned_cols=279 Identities=22% Similarity=0.257 Sum_probs=242.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CccHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DNNKS 521 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~--~~~k~ 521 (729)
..++.||++|.++++++|..|+..|++++..+..+|..|++.|+||.|+.+|.+++..++++|+++|.||+.+ +++|.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3589999999999999999999999999998999999999999999999999999999999999999999984 78999
Q ss_pred HHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc------------------CCCH
Q 004806 522 AIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG------------------NGTP 582 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~------------------~~~~ 582 (729)
.|++.|+|++|+.+|++ .+.+++++|+++|++||.++++|..|+. ++++.|+.+|. ..+.
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 99999999999999997 5789999999999999999999999995 67999999872 2257
Q ss_pred HHHHHHHHHHHhcccCc-HHHHHHHH-cCcHHHHHHhcC-------CCHHHHHHHHHHHHHHhCCcc-------------
Q 004806 583 RGKKDAATALFNLSIYH-ENKARIVQ-AGAVKHLVDLMD-------PAAGMVDKAVAVLANLATIPD------------- 640 (729)
Q Consensus 583 ~v~~~Al~aL~nLs~~~-en~~~lv~-~G~V~~Lv~LL~-------~~~~v~e~Al~~L~nLa~~~e------------- 640 (729)
.+++.|+++|.||+... +++..+++ .|+++.|+.++. .+...++.|+++|.||+...+
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 99999999999999866 45888888 567789999983 456789999999999997521
Q ss_pred -------------hHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCH----hhHHHHHhCCCHHHHHHhhhC
Q 004806 641 -------------GRVAIGQENGIPVLVEVVE-LGSARGKENAAAALLQLCTNSS----RFCSMVLQEGAVPPLVALSQS 702 (729)
Q Consensus 641 -------------~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~~----~~~~~vl~~G~v~~Lv~Ll~s 702 (729)
+.+.+++.++++.|+.+|. +.++.++++|+++|+|||.+.. ..+..+.++|+++.|+.|+.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 2223334456788899996 4689999999999999998762 234456668999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCcC
Q 004806 703 GTPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 703 g~~rvr~~A~~lL~~L~~~~~ 723 (729)
+++++++.|.++|++|.....
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHhCChh
Confidence 999999999999999987654
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=275.49 Aligned_cols=260 Identities=23% Similarity=0.283 Sum_probs=234.7
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCc-cHHHHHhc-CC
Q 004806 462 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDN-NKSAIANA-NA 528 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-----------~d~~v~e~Al~aL~nLs~~~~-~k~~I~~~-g~ 528 (729)
.+|+++|.+++.+ +++|..+.+.|+++.|+.+|.. .++.++++|+++|.||+.+++ ++..+... |+
T Consensus 166 ~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 166 CPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 4899999999885 8999999999999999999952 246789999999999998765 67677654 66
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccC--cchhhhhhccCcHHHHHHhh-cCCCHHHHHHHHHHHHhccc-CcHHHHH
Q 004806 529 IEPLIHVLQTGSPEARENAAATLFSLSVI--EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSI-YHENKAR 604 (729)
Q Consensus 529 I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~I~~~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs~-~~en~~~ 604 (729)
|+.|+.+|.+++.++++.|+++|.||+.. +++|..|++.|+|+.|+.+| .+++..+++.|+.+|+||+. .++++..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999984 56889999999999999975 56789999999999999999 7889999
Q ss_pred HH-HcCcHHHHHHhcC-CC-H---HHHHHHHHHHHHHhC----CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 004806 605 IV-QAGAVKHLVDLMD-PA-A---GMVDKAVAVLANLAT----IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674 (729)
Q Consensus 605 lv-~~G~V~~Lv~LL~-~~-~---~v~e~Al~~L~nLa~----~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~ 674 (729)
++ ..|+++.|+.+|. .+ . .+++.|+++|.||+. .++.+..+.+.|+++.|+.+|.+++..++++|+++|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 98 7999999999994 22 2 589999999999994 8888999999999999999999999999999999999
Q ss_pred HHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 675 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 675 nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
||+..+++++..+++.|+++.|+.++.++++++++.|.++|++|....
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999888889999999999999999999999999999999999998764
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-27 Score=262.53 Aligned_cols=281 Identities=21% Similarity=0.263 Sum_probs=244.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~~~~k~ 521 (729)
.+.|+.|+++|+++++++|..|+++|++|+.++++++..|++.|+|+.|+.+|. +.++++++.|+++|+||+.++.+|.
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 578999999999999999999999999999988999999999999999999999 8899999999999999999988999
Q ss_pred HHHhcCCHHHHHHHhc--------CC--------CHHHHHHHHHHHHHhccCcchhhhhhcc-CcHHHHHHhhcCC----
Q 004806 522 AIANANAIEPLIHVLQ--------TG--------SPEARENAAATLFSLSVIEDNKIKIGRS-GAIGPLVDLLGNG---- 580 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~--------s~--------~~e~r~~Aa~aL~nLS~~~e~k~~I~~~-g~I~~Lv~LL~~~---- 580 (729)
.+++ |++++|+.+|. ++ +..+..+|+++|+||+..++++..+.+. |+++.|+.+|+++
T Consensus 123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 201 (457)
T 1xm9_A 123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201 (457)
T ss_dssp HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHT
T ss_pred HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhcccc
Confidence 9999 99999999993 32 3556679999999999998889999987 9999999887630
Q ss_pred --------------------------------------------------------------------------------
Q 004806 581 -------------------------------------------------------------------------------- 580 (729)
Q Consensus 581 -------------------------------------------------------------------------------- 580 (729)
T Consensus 202 ~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (457)
T 1xm9_A 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH 281 (457)
T ss_dssp CTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGS
T ss_pred CCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC
Confidence
Q ss_pred ---------------CHHHHHHHHHHHHhcccCcH-----HHHHHH-HcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC
Q 004806 581 ---------------TPRGKKDAATALFNLSIYHE-----NKARIV-QAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 581 ---------------~~~v~~~Al~aL~nLs~~~e-----n~~~lv-~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~ 638 (729)
++.+++.|+++|.||+.... ..+.++ +.|+++.|+++| ..+..++..|+++|.||+.+
T Consensus 282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 24556678999999987432 212334 689999999999 46788999999999999998
Q ss_pred cchHHHHHhCCcHHHHHHHHccCC------HHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHH
Q 004806 639 PDGRVAIGQENGIPVLVEVVELGS------ARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKA 711 (729)
Q Consensus 639 ~e~r~~i~~~g~I~~Lv~lL~s~s------~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A 711 (729)
.+.+..+. .++++.|+++|...+ +.+...++++|.++...++.+...+.+.|++++|+.|+.++ +++++++|
T Consensus 362 ~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A 440 (457)
T 1xm9_A 362 PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440 (457)
T ss_dssp GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHH
Confidence 87777665 479999999998753 46888999999999999888999999999999999999999 99999999
Q ss_pred HHHHHHhhcCcCcC
Q 004806 712 QALLSYFRNQRHGN 725 (729)
Q Consensus 712 ~~lL~~L~~~~~~~ 725 (729)
.++|.++-.+++-+
T Consensus 441 ~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 441 RLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHTTSSSTTCS
T ss_pred HHHHHHHHcchhhh
Confidence 99999887766543
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=263.97 Aligned_cols=278 Identities=20% Similarity=0.229 Sum_probs=250.2
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.|+.||++|+ ++++++|.+|+++|.+++.++++++..+++.|+||.|+.+|.+++..+++.|+++|+||+.+ +..+
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 478999999997 55689999999999999999999999999999999999999999999999999999999986 5678
Q ss_pred HHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhccCcchhhhhh-ccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 521 SAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~-----~e~r~~Aa~aL~nLS~~~e~k~~I~-~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
..+.+.|++++|+.+|...+ ..++.+++++|.+++........+. ..++++.|+.+|.+.+..++..|+++|.+
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~ 258 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999998654 4578899999999998765554443 35899999999999999999999999999
Q ss_pred cccCcHH-HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC-cchHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 004806 595 LSIYHEN-KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAA 671 (729)
Q Consensus 595 Ls~~~en-~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~ 671 (729)
|+..... ...+++.|+++.|+.+| ..+..++..++.+|+||+.. +..+..+++.|+++.|+.+|.+.++.+++.|++
T Consensus 259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~ 338 (510)
T 3ul1_B 259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338 (510)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHH
T ss_pred HhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHH
Confidence 9986654 45667899999999999 46788999999999999884 455778889999999999999999999999999
Q ss_pred HHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 672 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 672 aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+|.||+.+++..+..+.+.|+++.|+.++.+++.++++.|.++|.++..
T Consensus 339 aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998864
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-26 Score=261.46 Aligned_cols=278 Identities=20% Similarity=0.228 Sum_probs=251.5
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.|+.||++|+ +.++++|.+|+++|.+++.++..++..+++.|+||.|+.+|.+++..+++.|+++|+||+.+ +.++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 578999999997 55689999999999999999999999999999999999999999999999999999999976 6789
Q ss_pred HHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhccCcchhhhhh-ccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 521 SAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~-----~e~r~~Aa~aL~nLS~~~e~k~~I~-~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
..+.+.|++++|+.+|...+ ..++.+++++|.+++........+. ..++++.|+.+|.++++.++..|+++|.+
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 277 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999998654 4578899999999998765554443 46899999999999999999999999999
Q ss_pred cccCcH-HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 004806 595 LSIYHE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 671 (729)
Q Consensus 595 Ls~~~e-n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~ 671 (729)
|+.... ....++..|+++.|+.+| +.+..++..++.+|+||+. .++.+..+++.|+++.|+.+|.+.++.++..|+|
T Consensus 278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 278 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 998655 456677899999999999 4678899999999999988 4556788899999999999999999999999999
Q ss_pred HHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 672 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 672 aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+|.||+.+++..+..+++.|+++.|+.++.+++.++++.|.++|.+|..
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998864
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=273.26 Aligned_cols=280 Identities=16% Similarity=0.198 Sum_probs=250.7
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-----------------------------hhH---HHHHhcCcH
Q 004806 441 GIETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-----------------------------DNR---MVIANCGAI 488 (729)
Q Consensus 441 ~~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-----------------------------~nr---~~I~~~GaI 488 (729)
...+.++.||++|++++..+|..|++.|.+|+...+ .++ ..+.++|+|
T Consensus 418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaV 497 (810)
T 3now_A 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497 (810)
T ss_dssp HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCH
Confidence 346899999999999999999999999999998542 123 678899999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh---
Q 004806 489 NILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG--- 565 (729)
Q Consensus 489 ~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~--- 565 (729)
|.|+.+|.++++.++++|+++|.||+.+++++..+++.|++++|+.+|.++++..+++|+++|.+|+...+....+.
T Consensus 498 p~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 99999999999999999999999999988899999999999999999999999999999999999987544443332
Q ss_pred ccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccC-cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchH
Q 004806 566 RSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR 642 (729)
Q Consensus 566 ~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~-~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r 642 (729)
..|++++|+.+|.++ +...+..|+++|.||+.. ++++..+++.|+++.|+.+| +.+..++..|+.+|+||+.+++.+
T Consensus 578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence 147999999999876 445567999999999986 57899999999999999998 567789999999999999999998
Q ss_pred HHHHh-CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHh-CCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 643 VAIGQ-ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQ-EGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 643 ~~i~~-~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~-~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
..+.+ .|+++.|+.++.+.+..+++.|+++|.+|+.+++..++.+++ .|+++.|+.++.+++.++++.|.++|.++..
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 88885 688999999999999999999999999999988888888998 8999999999999999999999999999865
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=260.17 Aligned_cols=278 Identities=18% Similarity=0.222 Sum_probs=242.3
Q ss_pred HHHHHHHHHHhcC------------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcH----------HHHHHHHcCCC-
Q 004806 443 ETQVRKLVEDLKS------------TSLDTQREATAELRLLAKHNMDNRMVIANCGAI----------NILVDMLHSSE- 499 (729)
Q Consensus 443 ~~~V~~Lv~~L~s------------~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI----------~~Lv~LL~s~d- 499 (729)
.+.++.||++|+. ++++.|.+|+++|.+++...++......+.|++ +.++.+|.+..
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 6789999999995 337999999999999999988888888888888 66677776642
Q ss_pred -HH-----HHH-------HHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcC-----------CCHHHHHHHHHHHHHhc
Q 004806 500 -TK-----IQE-------NAVTALLNLSINDNNKSAIANANAIEPLIHVLQT-----------GSPEARENAAATLFSLS 555 (729)
Q Consensus 500 -~~-----v~e-------~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s-----------~~~e~r~~Aa~aL~nLS 555 (729)
.+ +.+ +|+++|.|++.++++|..|.+.|++++|+.+|.. .++.++.+|+++|.||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 11 444 9999999999999999999999999999999952 23678999999999999
Q ss_pred cCcc-hhhhhhc-cCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC--cHHHHHHHHcCcHHHHHHhc-C-CCHHHHHHHH
Q 004806 556 VIED-NKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY--HENKARIVQAGAVKHLVDLM-D-PAAGMVDKAV 629 (729)
Q Consensus 556 ~~~e-~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~--~en~~~lv~~G~V~~Lv~LL-~-~~~~v~e~Al 629 (729)
..++ ++..+.. .|+|+.|+.+|+++++.++..|+++|.||+.. ++++..+++.|+|+.|+++| . .+..+++.|+
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 8655 6666654 47799999999999999999999999999984 67999999999999999975 4 5678899999
Q ss_pred HHHHHHhC-CcchHHHHH-hCCcHHHHHHHHccCCH----HHHHHHHHHHHHHhh---CCHhhHHHHHhCCCHHHHHHhh
Q 004806 630 AVLANLAT-IPDGRVAIG-QENGIPVLVEVVELGSA----RGKENAAAALLQLCT---NSSRFCSMVLQEGAVPPLVALS 700 (729)
Q Consensus 630 ~~L~nLa~-~~e~r~~i~-~~g~I~~Lv~lL~s~s~----~~ke~A~~aL~nL~~---~~~~~~~~vl~~G~v~~Lv~Ll 700 (729)
.+|+||+. +++.+..+. ..|+++.|+++|...++ .++++|+++|+||+. .++++++.+++.|+++.|+.++
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 99999999 778888887 78999999999987654 489999999999997 6788999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHHhhc
Q 004806 701 QSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 701 ~sg~~rvr~~A~~lL~~L~~ 720 (729)
.+++..+++.|.++|.+|..
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHS
T ss_pred cCCChHHHHHHHHHHHHHHc
Confidence 99999999999999999974
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-26 Score=270.07 Aligned_cols=279 Identities=18% Similarity=0.168 Sum_probs=250.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
.+.|+.|+.+|+++++.+|.+|++.|.+++. +.++|..+.++|++++|+.+|.+.++.+++.|+++|.||+.+.+....
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 4789999999999999999999999999997 567999999999999999999999999999999999999875443332
Q ss_pred H---HhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 523 I---ANANAIEPLIHVLQTG-SPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 523 I---~~~g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
+ ...|++++|+.+|.++ +...+..|+++|.||+.. ++++..|++.|+++.|+.+|.++++.+++.|+++|.||+.
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 2 1246999999999876 355667899999999986 5788899999999999999999999999999999999999
Q ss_pred CcHHHHHHHH-cCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC-CcchHHHHHh-CCcHHHHHHHHccCCHHHHHHHHHHH
Q 004806 598 YHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLANLAT-IPDGRVAIGQ-ENGIPVLVEVVELGSARGKENAAAAL 673 (729)
Q Consensus 598 ~~en~~~lv~-~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~-~~e~r~~i~~-~g~I~~Lv~lL~s~s~~~ke~A~~aL 673 (729)
.++.+..++. .|+++.|+.+++ .+..++..|+++|+||+. ++.....+++ .|+++.|+.+|.+++..+++.|+++|
T Consensus 653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL 732 (810)
T 3now_A 653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVII 732 (810)
T ss_dssp SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999888886 799999999994 678899999999999999 6778888888 89999999999999999999999999
Q ss_pred HHHhhCCHhhHHHHHhCCCHHHHHHhhhCC---CHHHHHHHHHHHHHhhcCc
Q 004806 674 LQLCTNSSRFCSMVLQEGAVPPLVALSQSG---TPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 674 ~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg---~~rvr~~A~~lL~~L~~~~ 722 (729)
.|++..+++....+.+.|+++.|+.+++.. ++++.+.|.++|+.+-.+.
T Consensus 733 ~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 733 LNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 999998888899999999999999999765 5899999999999986653
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=259.88 Aligned_cols=278 Identities=21% Similarity=0.264 Sum_probs=234.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~-s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+.|+.||++|++++.++|..|+++|++|+.+ +.++|..|++.|+|+.|+.+|.+ .+.+++++|+.+|+||+.++.+|
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 46899999999999999999999999999995 68999999999999999999997 68899999999999999999999
Q ss_pred HHHHhcCCHHHHHHHhc------------------CCCHHHHHHHHHHHHHhccCc-chhhhhhcc-CcHHHHHHhhcC-
Q 004806 521 SAIANANAIEPLIHVLQ------------------TGSPEARENAAATLFSLSVIE-DNKIKIGRS-GAIGPLVDLLGN- 579 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~------------------s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~-g~I~~Lv~LL~~- 579 (729)
..|+. ++|++|+++|. ..+.+++++|+++|.||+... ++|..|++. |+++.|+.+|+.
T Consensus 169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247 (584)
T ss_dssp HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99995 57999999872 224789999999999999865 457777764 556666666542
Q ss_pred -------------------------------------------------------------------------CCHHHHH
Q 004806 580 -------------------------------------------------------------------------GTPRGKK 586 (729)
Q Consensus 580 -------------------------------------------------------------------------~~~~v~~ 586 (729)
.++.+++
T Consensus 248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E 327 (584)
T 3l6x_A 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327 (584)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence 2344556
Q ss_pred HHHHHHHhcccCc-----HHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc
Q 004806 587 DAATALFNLSIYH-----ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL 660 (729)
Q Consensus 587 ~Al~aL~nLs~~~-----en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s 660 (729)
.|++||.|||... .++..+.+.|+++.|++|| ..+..++..|+++|.||+.+...+..| ..|+++.|+.+|.+
T Consensus 328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~ 406 (584)
T 3l6x_A 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPG 406 (584)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcC
Confidence 6666777776532 2233344578999999999 467889999999999999988888766 67899999999987
Q ss_pred C--------CHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC--CHHHHHHHHHHHHHhhcCc
Q 004806 661 G--------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 661 ~--------s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg--~~rvr~~A~~lL~~L~~~~ 722 (729)
+ +..+...|+++|.||+..++.+.+.+++.|+|+.|+.++.++ .+++++.|.++|..|-.+.
T Consensus 407 ~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 407 GQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp SSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred CcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 5 578899999999999999999999999999999999999987 7999999999999986654
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=249.99 Aligned_cols=240 Identities=21% Similarity=0.260 Sum_probs=215.9
Q ss_pred HHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHH
Q 004806 443 ETQVRKLVEDLKS-----------TSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTAL 510 (729)
Q Consensus 443 ~~~V~~Lv~~L~s-----------~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL 510 (729)
.+.++.|+.+|.. .++++|.+|++.|.+|++.+..++..+... |+||.|+.+|.++++++++.|+++|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 151 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4678888888852 246789999999999999888899888654 6699999999999999999999999
Q ss_pred HHhhcC--CccHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhcc-Ccchhhhhh-ccCcHHHHHHhhcCCCH---
Q 004806 511 LNLSIN--DNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSV-IEDNKIKIG-RSGAIGPLVDLLGNGTP--- 582 (729)
Q Consensus 511 ~nLs~~--~~~k~~I~~~g~I~~Lv~lL-~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~-~~g~I~~Lv~LL~~~~~--- 582 (729)
.||+.. +.+|..|.+.|+|++|+++| ++++.++++.|+.+|+||+. .++++..|+ ..|+++.|+.+|.+++.
T Consensus 152 ~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~ 231 (354)
T 3nmw_A 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231 (354)
T ss_dssp HHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred HHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence 999975 56899999999999999975 66789999999999999999 678888888 68999999999997754
Q ss_pred -HHHHHHHHHHHhccc----CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHH
Q 004806 583 -RGKKDAATALFNLSI----YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLV 655 (729)
Q Consensus 583 -~v~~~Al~aL~nLs~----~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv 655 (729)
.+++.|+++|.||+. .++++..+++.|+++.|+.+| +.+..+++.|+++|+||+. +++.+..+++.|+++.|+
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv 311 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 311 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 589999999999995 889999999999999999999 4678899999999999995 788899999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHHhhCCHh
Q 004806 656 EVVELGSARGKENAAAALLQLCTNSSR 682 (729)
Q Consensus 656 ~lL~s~s~~~ke~A~~aL~nL~~~~~~ 682 (729)
++|.++++.+++.|+++|.||+.+.+.
T Consensus 312 ~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 312 NLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999998764
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=247.84 Aligned_cols=279 Identities=23% Similarity=0.252 Sum_probs=253.8
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~-~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.++.|+++|++++ +.+|..|+++|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+.+ +.++
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 467999999999876 99999999999999998899999999999999999999999999999999999999876 5578
Q ss_pred HHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc
Q 004806 521 SAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL-~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 599 (729)
..+...|++++|+.+| ...+..++..|+++|.+|+............++++.|+.+|.++++.++..|+++|.+|+...
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999 567899999999999999987555555556899999999999999999999999999999866
Q ss_pred HHH-HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccC-CHHHHHHHHHHHHH
Q 004806 600 ENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELG-SARGKENAAAALLQ 675 (729)
Q Consensus 600 en~-~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~-s~~~ke~A~~aL~n 675 (729)
..+ ..+++.|+++.|+.+| +.+..++..|+.+|++|+. .+.....+++.|+++.|+.+|.+. ++.++..|+++|.|
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 554 6778899999999999 4678899999999999998 555677888999999999999998 99999999999999
Q ss_pred HhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 676 LCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 676 L~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
|+..++.....+++.|+++.|+.++.++++.+++.|.++|.+|...
T Consensus 356 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9998888888999999999999999999999999999999998754
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=219.62 Aligned_cols=240 Identities=26% Similarity=0.345 Sum_probs=223.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSIND-NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIK 563 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~-~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~ 563 (729)
|+|+.|+.+|.+++++++..|+++|.+++... .++..+.+.|+++.|+.+|++++.+++..|+++|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 68999999999999999999999999998765 4889999999999999999999999999999999999997 888999
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcc-cCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc-c
Q 004806 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLS-IYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP-D 640 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs-~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~-e 640 (729)
+.+.|+++.|+.+|+++++.++..|+++|.||+ ..++++..+++.|+++.|+.++ +.+..++..++++|++|+... +
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 5788999999999999999999 467889999999999999854 4
Q ss_pred hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 641 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 641 ~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
.+..+.+.|+++.|+.++.+.++.++..|+++|.+|+..++..+..+.+.|+++.|+.+++++++.+++.|.++|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 45888899999999999999999999999999999999888889999999999999999999999999999999999988
Q ss_pred CcCcC
Q 004806 721 QRHGN 725 (729)
Q Consensus 721 ~~~~~ 725 (729)
...+.
T Consensus 242 ~~~~~ 246 (252)
T 4hxt_A 242 GGWLE 246 (252)
T ss_dssp TCBCC
T ss_pred CCCcc
Confidence 76554
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=220.12 Aligned_cols=237 Identities=29% Similarity=0.385 Sum_probs=221.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I 523 (729)
.++.|++.|+++++++|..|++.|.+++..+++++..+.+.|+++.|+.+|.++++.++..|+++|.+|+.+ +.++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 589999999999999999999999999998888999999999999999999999999999999999999987 7889999
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhc-cCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLS-VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHEN 601 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS-~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en 601 (729)
.+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+.+.|+++.|+.+|+++++.++..|+++|.||+. .+.+
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999 467888889999999999999999999999999999999998 4556
Q ss_pred HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 602 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
+..+++.|+++.|+.++ +.+..++..|+.+|.+|+. .++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+..
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 68899999999999999 4678899999999999998 556678889999999999999999999999999999999987
Q ss_pred CH
Q 004806 680 SS 681 (729)
Q Consensus 680 ~~ 681 (729)
.+
T Consensus 243 ~~ 244 (252)
T 4hxt_A 243 GW 244 (252)
T ss_dssp CB
T ss_pred CC
Confidence 64
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=245.91 Aligned_cols=278 Identities=19% Similarity=0.228 Sum_probs=248.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d-----~~v~e~Al~aL~nLs~~~ 517 (729)
.+.|+.|+.+|.+++.+++..|+++|.+|+.+++.+|..+.+.|+++.|+.+|...+ ..++..++++|.|++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999999999999999998653 457889999999998875
Q ss_pred cc-HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcch-hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 518 NN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 518 ~~-k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
.. .......++++.|+.+|.+++++++..|+++|.+|+..... ...+...|+++.|+.+|.+.+..++..|+.+|.||
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 43 33444568899999999999999999999999999986554 55667789999999999999999999999999999
Q ss_pred cc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 004806 596 SI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 672 (729)
Q Consensus 596 s~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~a 672 (729)
+. .+..+..+++.|+++.|+.+| +++..++..|+++|.||+. ..+.+..+.+.|+++.|+.+|.+++..++..|+++
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~a 400 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWA 400 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 87 566788899999999999999 4678899999999999998 45567888899999999999999999999999999
Q ss_pred HHHHhhC-CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 673 LLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 673 L~nL~~~-~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
|.|++.+ +.+.+..+++.|+++.|+.++.+.+++++..+.++|.++-.
T Consensus 401 L~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 401 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999975 56778889999999999999999999999999998887753
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=244.20 Aligned_cols=278 Identities=19% Similarity=0.231 Sum_probs=246.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d-----~~v~e~Al~aL~nLs~~~ 517 (729)
.+.|+.|+++|++++.+++..|+++|.+++.+++..|..+.+.|+++.|+.+|...+ ..++..++++|.|++.+.
T Consensus 142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 221 (510)
T 3ul1_B 142 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221 (510)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999999999999999999999999999999999998754 457889999999999875
Q ss_pred cc-HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcch-hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 518 NN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 518 ~~-k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
.. .......++++.|+++|.+++.+++..|+++|.+|+..... ...+...|+++.|+.+|.+.+..++..|+++|.||
T Consensus 222 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl 301 (510)
T 3ul1_B 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301 (510)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence 43 33344468899999999999999999999999999986554 45567789999999999999999999999999999
Q ss_pred cc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 004806 596 SI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 672 (729)
Q Consensus 596 s~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~a 672 (729)
+. .+.++..+++.|+++.|+.+| +++..++..|+++|.||+. ..+.+..+.+.|+++.|+.++.+++..++..|+++
T Consensus 302 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~a 381 (510)
T 3ul1_B 302 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381 (510)
T ss_dssp TTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 77 556778899999999999999 4678899999999999998 55667888999999999999999999999999999
Q ss_pred HHHHhhC-CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 673 LLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 673 L~nL~~~-~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
|.|++.. +.+++..+++.|+++.|+.++.+.+++++..+.++|.++-.
T Consensus 382 L~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 382 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999986 46678889999999999999999999999999998887643
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-24 Score=241.89 Aligned_cols=279 Identities=20% Similarity=0.209 Sum_probs=253.9
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.++.|+++|+++ ++.+|..|++.|.+++..++.++..+...|+++.|+.+|.+.++.+++.|+++|.+|+.+ +.++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 46799999999987 899999999999999998888999999999999999999999999999999999999876 5678
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY- 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~- 598 (729)
..+...|+++.|+.+|.+.+..++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 88889999999999999989999999999999999865 4445555679999999999999999999999999999975
Q ss_pred cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC-cchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL 676 (729)
++....+++.|+++.|+.+| +.+..++..|+.+|.+|+.. +.....+++.|+++.|+.+|.+.++.++..|+++|.+|
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46677888999999999999 56788999999999999984 45567788899999999999999999999999999999
Q ss_pred hhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 677 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 677 ~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
+..++.....+++.|+++.|+.++.++++.+++.|.++|.+|...
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 998888888888999999999999999999999999999998653
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-24 Score=242.47 Aligned_cols=277 Identities=19% Similarity=0.180 Sum_probs=250.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHHHHHHhhcC-CccH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHSSE-TKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-~nr~~I~~~GaI~~Lv~LL~s~d-~~v~e~Al~aL~nLs~~-~~~k 520 (729)
..++.|++.|.++++++|..|+..|+.++.... .....+...|+++.|+.+|.+++ +.++..|+++|.+|+.+ +.++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458999999999999999999999999866543 67788889999999999999886 99999999999999876 6788
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhh-cCCCHHHHHHHHHHHHhcccC
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs~~ 598 (729)
..+++.|+++.|+.+|.++++.++..|+++|.+|+.. +.++..+...|+++.|+.+| .+.+..++..|+++|.||+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999999999999999999975 55688888899999999999 567899999999999999987
Q ss_pred cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchH-HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR-VAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r-~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL 676 (729)
..........|+++.|+.+| +.+..++..++++|.+|+...+.+ ..+.+.|+++.|+.+|.+.++.++..|+++|.+|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 55555556799999999999 467889999999999999866554 6778899999999999999999999999999999
Q ss_pred hhCCHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHhhc
Q 004806 677 CTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRN 720 (729)
Q Consensus 677 ~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L~~ 720 (729)
+.+.+.....+++.|+++.|+.++.++ ++.+++.|.++|.+|..
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 999988888999999999999999999 89999999999999975
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=221.38 Aligned_cols=235 Identities=22% Similarity=0.323 Sum_probs=215.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~k~~I 523 (729)
..+.+++.|+++++++|..|++.|+.+...+..++..+.+.|+|+.|+.+|.+.++.++..|+++|.+|+. ++.++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46889999999999999999999976655577888999999999999999999999999999999999997 57889999
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh-hhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHEN 601 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k-~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en 601 (729)
.+.|+++.|+.+|+++++.++..|+++|.+|+.....+ ..+.+.|+++.|+.+|.+++..++..|+++|.||+. .+++
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999999999999999988888 888889999999999999999999999999999998 5567
Q ss_pred HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 602 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
+..+++.|+++.|+.+| +++..++..|+++|.+|+. .++.+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.+
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence 78889999999999999 5678899999999999996 566788889999999999999999999999999999999853
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-23 Score=229.47 Aligned_cols=276 Identities=21% Similarity=0.224 Sum_probs=249.2
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 004806 444 TQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 521 (729)
Q Consensus 444 ~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~ 521 (729)
+.++.|++.|+++ ++++|..|++.|.+++..+.++...+.+.|+++.|+.+|.++++.+++.|+++|.+|+.+ +..+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6899999999988 899999999999999998888888888999999999999999999999999999999876 45788
Q ss_pred HHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhccCc--chhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 522 AIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
.+.+.|+++.|+.+|.+ .+..++..|+++|.+|+... ..+..+. .++++.|+.+|.+++..++..|+++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999996 67999999999999999753 3333333 79999999999999999999999999999985
Q ss_pred -cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcc-hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 004806 599 -HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 675 (729)
Q Consensus 599 -~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e-~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~n 675 (729)
++++..++..|+++.|+.+| +.+..++..|+.+|.+|+...+ ....+.+.|+++.|+.+|.+.++.++..|+++|.+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46777888999999999999 5678899999999999998654 45667888999999999999999999999999999
Q ss_pred HhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 676 LCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 676 L~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
++.+++...+.+++.|+++.|+.++.++++++++.|.++|.+|..
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 999888888889999999999999999999999999999998864
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-24 Score=216.24 Aligned_cols=235 Identities=20% Similarity=0.274 Sum_probs=217.8
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHh-hcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Ccchhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIK 563 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nL-s~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~ 563 (729)
..++.++.+|.+++++++..|+++|.++ +.++.++..+.+.|+++.|+.+|++++++++..|+++|.+|+. .++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5689999999999999999999999775 4456778889999999999999999999999999999999998 6788999
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH-HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC-cc
Q 004806 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK-ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI-PD 640 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~-~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~-~e 640 (729)
+.+.|+++.|+.+|+++++.++..|+++|.||+..++++ ..+++.|+++.|+.+| +.+..++..|+++|.+|+.. ++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998888 8899999999999999 56788999999999999984 46
Q ss_pred hHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 641 GRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 641 ~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
.+..+.+.|+++.|+.+|.++++.+++.|+++|.+|+..++..+..+.+.|+++.|+.++.++++++++.|.++|.+|..
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 67788899999999999999999999999999999999998889999999999999999999999999999999998864
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-23 Score=226.31 Aligned_cols=277 Identities=20% Similarity=0.211 Sum_probs=247.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCC--cc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSIND--NN 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~--~~ 519 (729)
.+.++.|++.|++++++++..|++.|.+++..++.++..+.+.|+++.|+.+|.+ .+..++..|+++|.+|+.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 4689999999999999999999999999999888899999999999999999996 68999999999999998653 33
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 520 KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
+..+. .++++.|+.+|.+++..++..++++|.+|+.. ++.+..+...|+++.|+.+|.+.++.++..|+++|.+|+..
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 22222 78999999999999999999999999999985 45666777789999999999999999999999999999985
Q ss_pred cH-HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 004806 599 HE-NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQ 675 (729)
Q Consensus 599 ~e-n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~n 675 (729)
.+ ....+++.|+++.|+.+| +++..++..|+++|.+|+. .++....+++.++++.|+.+|.++++.++..|+++|.+
T Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 54 456678899999999999 4678899999999999997 56677788889999999999999999999999999999
Q ss_pred HhhC-CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 676 LCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 676 L~~~-~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
++.. ++.....+++.|+++.|+.++..+++++++.|.++|..|..
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9986 56777788899999999999999999999999999988765
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=231.51 Aligned_cols=278 Identities=19% Similarity=0.215 Sum_probs=249.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND-NNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~-~~k~ 521 (729)
.+.++.|++.|++++++++..|++.|.+++..++.++..+...|+++.|+.+|.+.+..++..|+++|.+|+.+. ....
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 356899999999999999999999999999988889999999999999999999999999999999999999764 4445
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-c
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-H 599 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~ 599 (729)
.....++++.|+.+|.+++..++..|+++|.+|+.. ++....+.+.|+++.|+.+|.+.+..++..|+++|.||+.. +
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 566789999999999999999999999999999975 44566777789999999999999999999999999999974 5
Q ss_pred HHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 600 ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
.....+++.|+++.|+.+| +.+..++..|+++|.+|+. ..+....+++.|+++.|+.+|..+++.++..|+++|.+++
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 6677788899999999999 4678899999999999997 5566777888999999999999999999999999999999
Q ss_pred hCC-H--hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 678 TNS-S--RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 678 ~~~-~--~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
... + .....+++.|+++.|+.++...+++++..|.++|..|-.
T Consensus 412 ~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 864 3 677888899999999999999999999999999987754
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-22 Score=226.01 Aligned_cols=278 Identities=21% Similarity=0.222 Sum_probs=240.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+.++.|+++|+++++.+|..|+..|.+++.+. .++..+... |+++.|+.+|.+ ++++++..|+.+|.+|+.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 467999999999999999999999999999854 577666654 999999999975 48999999999999999988899
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-C
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~ 598 (729)
..+.+.|+++.|+.+|+++++.++..|+++|.+|+.. +..+..+.+.|+++.|+.+|.+++.+++..++.+|.+|+. +
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999986 5667788889999999999999999999999999999987 5
Q ss_pred cHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHH---------------------
Q 004806 599 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLV--------------------- 655 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv--------------------- 655 (729)
++++..+++.|+++.|+.+|. ........++.+|.+|+.+++.+..+.+.|+++.|+
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 788888899999999999883 445666778888999988888888887777665554
Q ss_pred ------------------HHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC--CHHHHHHHHHHH
Q 004806 656 ------------------EVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG--TPRAKEKAQALL 715 (729)
Q Consensus 656 ------------------~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg--~~rvr~~A~~lL 715 (729)
++|.+.++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.++... .+.+++.|..+|
T Consensus 255 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 445556778888899999999988888899999999999999999863 379999999999
Q ss_pred HHhhcC
Q 004806 716 SYFRNQ 721 (729)
Q Consensus 716 ~~L~~~ 721 (729)
.+|...
T Consensus 335 ~nl~~~ 340 (529)
T 1jdh_A 335 RHLTSR 340 (529)
T ss_dssp HHHTSS
T ss_pred HHHHcC
Confidence 998653
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-22 Score=223.91 Aligned_cols=278 Identities=23% Similarity=0.249 Sum_probs=243.2
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.++.|++.|.++ +++++..|+..|++|+.. ++++..+.+.|+++.|+.+|.++++.++..|+++|.||+.+ +..+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 47899999999754 899999999999999985 56999999999999999999999999999999999999876 5678
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCC-HHHHHHHHHHHHhcccC
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~-~~v~~~Al~aL~nLs~~ 598 (729)
..+.+.|+++.|+.+|.+++..++..++.+|.+|+. +++++..+++.|+++.|+.+|++++ ...+..++.+|.||+..
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999998 5788899999999999999999774 55667788899999999
Q ss_pred cHHHHHHHHcCcHHHHHHhcC----------------------------------------CCHHHHHHHHHHHHHHhCC
Q 004806 599 HENKARIVQAGAVKHLVDLMD----------------------------------------PAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~----------------------------------------~~~~v~e~Al~~L~nLa~~ 638 (729)
++++..+++.|+++.|+.++. .+..++..++++|++|+..
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 999999999998887776652 3455667788888888875
Q ss_pred -cchHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCCHh---hHHHHHhCCCHHHHHHhhhCCC-HHHHHHH
Q 004806 639 -PDGRVAIGQENGIPVLVEVVEL--GSARGKENAAAALLQLCTNSSR---FCSMVLQEGAVPPLVALSQSGT-PRAKEKA 711 (729)
Q Consensus 639 -~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL~~~~~~---~~~~vl~~G~v~~Lv~Ll~sg~-~rvr~~A 711 (729)
++.+..+.+.|+++.|+++|.. .++.+++.|+.+|++|+..++. .+..+.+.|+++.|+.++.++. +.+++.|
T Consensus 297 ~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a 376 (529)
T 1jdh_A 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHH
Confidence 4678889999999999999975 3489999999999999987543 5678889999999999999987 6999999
Q ss_pred HHHHHHhhcC
Q 004806 712 QALLSYFRNQ 721 (729)
Q Consensus 712 ~~lL~~L~~~ 721 (729)
.++|+++...
T Consensus 377 ~~~l~nl~~~ 386 (529)
T 1jdh_A 377 VGLIRNLALC 386 (529)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhcC
Confidence 9999998764
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-22 Score=232.02 Aligned_cols=277 Identities=21% Similarity=0.212 Sum_probs=245.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSS-ETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+.++.|+++|+++++.+|..|+..|.+|+.+. .++..+... |+++.|+.+|.+. +++++..|+.+|.+|+.+++++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 467899999999999999999999999999976 577777654 9999999999875 8999999999999999988899
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-C
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~ 598 (729)
..+.+.|+++.|+.+|+++++.++..|+.+|.+|+.. +..+..+.+.|+++.|+.+|++++.+++..++.+|.+|+. +
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999985 5667778889999999999999999999999999999996 7
Q ss_pred cHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHH-------------------
Q 004806 599 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEV------------------- 657 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~l------------------- 657 (729)
++++..+++.|+++.|+.+|. ....++..++.+|.+|+.+++.+..+++.|+++.|+.+
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999994 34667788999999999999999999888877666554
Q ss_pred --------------------HccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC-C-HHHHHHHHHHH
Q 004806 658 --------------------VELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-T-PRAKEKAQALL 715 (729)
Q Consensus 658 --------------------L~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~-~rvr~~A~~lL 715 (729)
|.+.++.+++.|+++|.+|+.+++..+..+++.|+++.|+.++... + +.++..|..+|
T Consensus 252 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 4456777888888888888888888889999999999999999873 3 79999999999
Q ss_pred HHhhc
Q 004806 716 SYFRN 720 (729)
Q Consensus 716 ~~L~~ 720 (729)
.+|..
T Consensus 332 ~nL~~ 336 (644)
T 2z6h_A 332 RHLTS 336 (644)
T ss_dssp HHHTS
T ss_pred HHHhc
Confidence 99964
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=206.72 Aligned_cols=195 Identities=20% Similarity=0.236 Sum_probs=176.0
Q ss_pred HHHHHHHHHHhcCCCH--HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCcc
Q 004806 443 ETQVRKLVEDLKSTSL--DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNN 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~--evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~ 519 (729)
...++.||++|+++++ ++|..|+..|++|++.++.+|..+.+.|+||.|+.+|.++++++|+.|+++|.||+. ++++
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3568999999999887 889999999999999999999999999999999999999999999999999999997 5789
Q ss_pred HHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc----------------CCCH
Q 004806 520 KSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----------------NGTP 582 (729)
Q Consensus 520 k~~I~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~----------------~~~~ 582 (729)
|..|++.|+|++|+++|+ +++.+++++|+.+|||||..+++|..|++ +++++|++++. ..+.
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999999998 57899999999999999999999999986 57999998763 1256
Q ss_pred HHHHHHHHHHHhccc-CcHHHHHHHHc-CcHHHHHHhcC-------CCHHHHHHHHHHHHHHhCC
Q 004806 583 RGKKDAATALFNLSI-YHENKARIVQA-GAVKHLVDLMD-------PAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 583 ~v~~~Al~aL~nLs~-~~en~~~lv~~-G~V~~Lv~LL~-------~~~~v~e~Al~~L~nLa~~ 638 (729)
.++..|..+|+||+. ++++|..|.+. |+|+.|+.+++ .+...++.|+.+|.||+..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999988 56899999985 78999999982 3567899999999999974
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-21 Score=226.17 Aligned_cols=278 Identities=23% Similarity=0.247 Sum_probs=243.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.++.|++.|.++ +.+++..|+..|+.|+.. .+++..+.+.|+++.|+.+|.++++.++..|+++|.||+.+ +..+
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 47899999999865 899999999999999996 46999999999999999999999999999999999999876 5677
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCC-HHHHHHHHHHHHhcccC
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATALFNLSIY 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~-~~v~~~Al~aL~nLs~~ 598 (729)
..+.+.|+++.|+.+|++++..++..++.+|.+|+. +++++..+++.|+++.|+.+|++.+ ...+..++.+|.||+.+
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 788899999999999999999999999999999997 7888999999999999999999874 67788999999999999
Q ss_pred cHHHHHHHHcCcHHHHHHhcC----------------------------------------CCHHHHHHHHHHHHHHhCC
Q 004806 599 HENKARIVQAGAVKHLVDLMD----------------------------------------PAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~----------------------------------------~~~~v~e~Al~~L~nLa~~ 638 (729)
++++..+++.|+++.|+.++. .+..+++.|+++|.+|+..
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999998888877652 3455667778888888774
Q ss_pred -cchHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhhCCH---hhHHHHHhCCCHHHHHHhhhCCC-HHHHHHH
Q 004806 639 -PDGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCTNSS---RFCSMVLQEGAVPPLVALSQSGT-PRAKEKA 711 (729)
Q Consensus 639 -~e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~A~~aL~nL~~~~~---~~~~~vl~~G~v~~Lv~Ll~sg~-~rvr~~A 711 (729)
++.+..+.+.|+++.|+.+|... .+.+++.|+++|.+|+...+ ..+..++..|+++.|+.++.+.. +.+++.|
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 46688888999999999999863 37999999999999998654 34556888999999999999886 7999999
Q ss_pred HHHHHHhhcC
Q 004806 712 QALLSYFRNQ 721 (729)
Q Consensus 712 ~~lL~~L~~~ 721 (729)
.++|.+|...
T Consensus 374 ~~~L~nLa~~ 383 (644)
T 2z6h_A 374 VGLIRNLALC 383 (644)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHccC
Confidence 9999998764
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-20 Score=224.26 Aligned_cols=277 Identities=21% Similarity=0.240 Sum_probs=239.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSS-ETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+.++.|+++|.+.++.+|..|+..|..|+... .++..+... |+++.|+.+|.+. ++.++..|+.+|.+|+.++.++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 678999999999999999999999999999954 567777754 8999999999764 8999999999999999988889
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-C
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~ 598 (729)
..+.+.|+|+.|+.+|+++++.++..|+++|.+|+.. +..+..+.+.|+++.|+.+|.+.+..++..|+.+|.+|+. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999986 5667777788999999999999999999999999999986 5
Q ss_pred cHHHHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHH----------------------
Q 004806 599 HENKARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL---------------------- 654 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~L---------------------- 654 (729)
++++..+++.|+++.|+.+|. ......+.++.+|.+|+.+.+.+..+++.|+++.|
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 788888888899999999884 33455667888888888887777777766655544
Q ss_pred -----------------HHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC-CC-HHHHHHHHHHH
Q 004806 655 -----------------VEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-GT-PRAKEKAQALL 715 (729)
Q Consensus 655 -----------------v~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s-g~-~rvr~~A~~lL 715 (729)
+.+|.+.++.+++.|+++|.+|+.+++..+..+++.|+++.|+.++.. ++ +.++..|..+|
T Consensus 388 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 388 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 445556678888999999999999888888999999999999999986 33 58999999999
Q ss_pred HHhhc
Q 004806 716 SYFRN 720 (729)
Q Consensus 716 ~~L~~ 720 (729)
.+|..
T Consensus 468 ~nL~~ 472 (780)
T 2z6g_A 468 RHLTS 472 (780)
T ss_dssp HHTTS
T ss_pred HHHHh
Confidence 99865
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=197.66 Aligned_cols=96 Identities=29% Similarity=0.467 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 107 EFMDQMISLVTRMHDRLVMIKQSQICSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
+.++++..++.++.+. .....+|++|+||||+++|+|||+++|||||||.||++||..++.+||+||++++
T Consensus 82 ~~i~~~~~l~~~~~~~---------~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 82 KYLMDMDELFSQVDEK---------RKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp HHHHHHHHHHHHHHHG---------GGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HHHHHHHHHHHHHhhh---------ccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3455566665554331 1345689999999999999999999999999999999999886568999999999
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCCC
Q 004806 187 HTTLIPNYTVKALIANWCELNNVKL 211 (729)
Q Consensus 187 ~~~l~pN~~l~~~I~~~~~~~~~~~ 211 (729)
..+|+||+.|+++|+.|+..|||.+
T Consensus 153 ~~~L~pN~~Lk~~Ie~~~~~~~~~~ 177 (179)
T 2f42_A 153 QDQLIPNLAMKEVIDAFIQENGWVE 177 (179)
T ss_dssp GGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred hhhCcchHHHHHHHHHHHHHCCCcC
Confidence 9999999999999999999999964
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=186.96 Aligned_cols=196 Identities=22% Similarity=0.306 Sum_probs=179.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~k~ 521 (729)
.+..+.|+.+|++.++++|..|++.|.+++..++.++..+.+.|+++.|+.+|.++++.+++.|+++|.||+. ++.++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3567899999999999999999999999998899999999999999999999999999999999999999985 567888
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-c
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-H 599 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~ 599 (729)
.+.+.|+++.|+.+|+++++.++..|+++|.+|+.. ++.+..+.+.|+++.|+.+|++++..++..|+++|.||+.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999974 55567788899999999999999999999999999999986 7
Q ss_pred HHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCC
Q 004806 600 ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~ 638 (729)
+++..+++.|+++.|+.++ +.+..+++.|+.+|.+|+.+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 8888899999999999999 57789999999999999863
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=218.14 Aligned_cols=280 Identities=16% Similarity=0.154 Sum_probs=236.8
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCh--------------------------------------hhHHHH
Q 004806 442 IETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNM--------------------------------------DNRMVI 482 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s-~~~evq~~Al~~L~~La~~s~--------------------------------------~nr~~I 482 (729)
..+.++.|++.++. .+..+...++..|.+|+...+ .++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 36778889999984 666778888888888887432 156778
Q ss_pred HhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHH---HHHHHHHHHHHhccCcc
Q 004806 483 ANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPE---ARENAAATLFSLSVIED 559 (729)
Q Consensus 483 ~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e---~r~~Aa~aL~nLS~~~e 559 (729)
.++|+|+.|+.++.+.++.+++.|+++|.||+.++.+|..+++.|++++|+.+|.++... .+.+|+.+|.+|+...+
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999999999988755 89999999999997666
Q ss_pred hhhhhhc---cCcHHHHHHhhcC--CCH------------HHHHHHHHHHHhcccCc-----HHHHHHHHc-CcHHHHHH
Q 004806 560 NKIKIGR---SGAIGPLVDLLGN--GTP------------RGKKDAATALFNLSIYH-----ENKARIVQA-GAVKHLVD 616 (729)
Q Consensus 560 ~k~~I~~---~g~I~~Lv~LL~~--~~~------------~v~~~Al~aL~nLs~~~-----en~~~lv~~-G~V~~Lv~ 616 (729)
....+.. .|+|++|+.||.. +.. .-+..|+.||.||+..+ +.+.++++. |+++.|..
T Consensus 534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 5554432 3999999999983 211 23779999999999976 347889995 99999999
Q ss_pred hc-CCCHHHHHHHHHHHHHHhCCcchH-HHHHhCC------cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHH
Q 004806 617 LM-DPAAGMVDKAVAVLANLATIPDGR-VAIGQEN------GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVL 688 (729)
Q Consensus 617 LL-~~~~~v~e~Al~~L~nLa~~~e~r-~~i~~~g------~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl 688 (729)
+| +.+..++..|+.+|.||+.+++++ +.+.+.+ .++.|+.++.+++...+..|+++|.+++..++..+..++
T Consensus 614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll 693 (778)
T 3opb_A 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELL 693 (778)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 99 567788899999999999998886 3554322 388999999999999999999999999988887888888
Q ss_pred hC-CCHHHHHHhhhC--CCHHHHHHHHHHHHHhhcC
Q 004806 689 QE-GAVPPLVALSQS--GTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 689 ~~-G~v~~Lv~Ll~s--g~~rvr~~A~~lL~~L~~~ 721 (729)
+. ++++.|+.+++. +++.++..+..++.+|...
T Consensus 694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 87 799999999999 7899999999999999874
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=198.00 Aligned_cols=192 Identities=20% Similarity=0.247 Sum_probs=173.1
Q ss_pred cHHHHHHHHcCCCH--HHHHHHHHHHHHhhc-CCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Ccchhh
Q 004806 487 AINILVDMLHSSET--KIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKI 562 (729)
Q Consensus 487 aI~~Lv~LL~s~d~--~v~e~Al~aL~nLs~-~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~ 562 (729)
.++.|+.+|.++++ +++..|+++|.+|+. ++.++..|.+.|+||+|+.+|+++++++++.|+++|.||+. ++++|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999887 899999999999985 57789999999999999999999999999999999999998 588999
Q ss_pred hhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhcC-----------------CCHHH
Q 004806 563 KIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLMD-----------------PAAGM 624 (729)
Q Consensus 563 ~I~~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL~-----------------~~~~v 624 (729)
.|++.|+|+.|+++|+ .++..+++.|+.+|+||+..++++..+++. +++.|+.++. .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 579999999999999999999999999875 6999998751 14578
Q ss_pred HHHHHHHHHHHhC-CcchHHHHHhC-CcHHHHHHHHccC------CHHHHHHHHHHHHHHhhC
Q 004806 625 VDKAVAVLANLAT-IPDGRVAIGQE-NGIPVLVEVVELG------SARGKENAAAALLQLCTN 679 (729)
Q Consensus 625 ~e~Al~~L~nLa~-~~e~r~~i~~~-g~I~~Lv~lL~s~------s~~~ke~A~~aL~nL~~~ 679 (729)
.+.|.++|.||+. ++++|..|.+. |+|+.|+.+++.. +...+|+|+.+|+||+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 8999999999998 56999999986 5689999999752 568999999999999975
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=222.64 Aligned_cols=271 Identities=19% Similarity=0.217 Sum_probs=229.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
..++.+++.|.+++.+++..++..|+.. ++..+. .|+|+.|+.+|.+.++.+++.|+.+|.+|+.+..++..+
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3578999999999888888888888744 344554 799999999999999999999999999999887778777
Q ss_pred Hhc-CCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-cH
Q 004806 524 ANA-NAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HE 600 (729)
Q Consensus 524 ~~~-g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~-~e 600 (729)
... |+++.|+++|+++ +++++.+|+.+|.+|+...+++..+++.|+|+.|+.+|+++++.++..|+++|.||+.. ..
T Consensus 188 ~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp TTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 754 8999999999866 79999999999999999988899999999999999999999999999999999999985 56
Q ss_pred HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCC-HHHHHHHHHHHHHHh
Q 004806 601 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGS-ARGKENAAAALLQLC 677 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s-~~~ke~A~~aL~nL~ 677 (729)
.+..+++.|+++.|+.+| +.+..+...++.+|.+|+. +++++..+.+.++++.|+.+|+..+ ...++.|+.+|++|+
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 347 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 677777899999999999 4667888899999999997 6788999999999999999998764 556778999999999
Q ss_pred hCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 678 TNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 678 ~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
.. ...+..+++.|+++.|+.++.++++.+++.|.++|..|....
T Consensus 348 ~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 348 VC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp TS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred cC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 75 457889999999999999999999999999999999887643
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-20 Score=184.63 Aligned_cols=196 Identities=20% Similarity=0.279 Sum_probs=180.1
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHH
Q 004806 525 NANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENK 602 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~ 602 (729)
..++.+.|+.+|.+.+++++..|+++|.+|+. .++.+..+.+.|+++.|+.+|+++++.++..|+++|.||+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35789999999999999999999999999995 67778889999999999999999999999999999999995 67889
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
..+++.|+++.|+.+| +.+..++..|+++|.||+. .++.+..+.+.|+++.|+.+|.++++.+++.|+++|.+|+..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 4678899999999999997 5556678889999999999999999999999999999999998
Q ss_pred HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 681 ~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+..+..+.+.|+++.|+.++.++++.+++.|.++|..|..
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999998864
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=173.79 Aligned_cols=77 Identities=25% Similarity=0.335 Sum_probs=72.0
Q ss_pred CCCCCCCcccccCccccccCceecCCC-ccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004806 133 SPVPIPSDFCCPLSLELMTDPVIVASG-QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 210 (729)
Q Consensus 133 ~~~~~p~~f~CpI~~~lm~dPV~~~~G-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~ 210 (729)
....+|++|.||||+++|+|||+++|| |+|||.||++||.. +.+||+||++|+..+|+||+.|+++|+.|+.++++.
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 345689999999999999999999999 99999999999987 468999999999999999999999999999999875
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-22 Score=171.23 Aligned_cols=76 Identities=30% Similarity=0.385 Sum_probs=70.4
Q ss_pred CCCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCC
Q 004806 133 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNV 209 (729)
Q Consensus 133 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~ 209 (729)
+...+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||+||++++..+|+||..|+++|+.|+.+|+.
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 34568999999999999999999999999999999999996 46899999999999999999999999999998753
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-21 Score=174.37 Aligned_cols=75 Identities=32% Similarity=0.406 Sum_probs=70.3
Q ss_pred CCCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcC
Q 004806 133 SPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNN 208 (729)
Q Consensus 133 ~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~ 208 (729)
....+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||+||++++..+|+||+.|+++|+.|+.+|+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 34568999999999999999999999999999999999985 5789999999999999999999999999999885
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=202.66 Aligned_cols=276 Identities=14% Similarity=0.149 Sum_probs=228.4
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCc-
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHS-SETKIQENAVTALLNLSINDN- 518 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~- 518 (729)
+...++.++++|..++.+.+..|+..|..++.+ ++.|..+++. |+++.|+.+++. .+..+...++.+|.||+.+.+
T Consensus 332 i~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 332 LKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 356788899999888777799999999999985 5788888775 889999999995 788899999999999976321
Q ss_pred --------------------------------------cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcch
Q 004806 519 --------------------------------------NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN 560 (729)
Q Consensus 519 --------------------------------------~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~ 560 (729)
++..+.+.|+++.|+.+++++++.+++.|+++|.+|+.+.++
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~ 490 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNF 490 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 345567789999999999999999999999999999999999
Q ss_pred hhhhhccCcHHHHHHhhcCCCHH---HHHHHHHHHHhcccCcHHHHHHHH---cCcHHHHHHhcC--CCH----------
Q 004806 561 KIKIGRSGAIGPLVDLLGNGTPR---GKKDAATALFNLSIYHENKARIVQ---AGAVKHLVDLMD--PAA---------- 622 (729)
Q Consensus 561 k~~I~~~g~I~~Lv~LL~~~~~~---v~~~Al~aL~nLs~~~en~~~lv~---~G~V~~Lv~LL~--~~~---------- 622 (729)
|..+++.|+++.|+.+|.++... ++..|+.||.+|+...+....+-. .|+|+.|+.||. +..
T Consensus 491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 99999999999999999988644 899999999999875444333311 499999999996 221
Q ss_pred ---HHHHHHHHHHHHHhCCc-----chHHHHHhC-CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhH-HHHHhCC-
Q 004806 623 ---GMVDKAVAVLANLATIP-----DGRVAIGQE-NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC-SMVLQEG- 691 (729)
Q Consensus 623 ---~v~e~Al~~L~nLa~~~-----e~r~~i~~~-g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~-~~vl~~G- 691 (729)
-....|+.+|.|||..+ +.|..++.. |+++.|..+|.+.+..++..|+++|.||+.+.. .+ +.+...+
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~ 649 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL-TIAAKFFNLEN 649 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSS
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcC
Confidence 12568999999999976 347888885 999999999999999999999999999998543 32 2333222
Q ss_pred -----CHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 692 -----AVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 692 -----~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
.++.|+.|+..++.++|+.|.++|.++.
T Consensus 650 ~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 650 PQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999984
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=213.76 Aligned_cols=129 Identities=22% Similarity=0.324 Sum_probs=102.1
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 004806 50 IKEAIRDQVDGVAPSSEILVKVAESL----SLRSNQEILIEAVALEKLKENAEQAEKAGEAEFMDQMISLVTRMHDRLVM 125 (729)
Q Consensus 50 i~~~~~~~~~~~~~~~~~~~~i~~~l----~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (729)
|.++++ |||+|+.+.|.+++..+ |+.+...+ .++..+.+.+++++...+++|.+.
T Consensus 827 ~~aVa~---DgRSy~~elF~~a~~il~~~~~l~~~~~i-~~~~~l~~~~~~~~~~~~~~e~~~----------------- 885 (968)
T 3m62_A 827 ISAVAK---DERSFNRNLFVRAVDILGRKTGLASPEFI-EKLLNFANKAEEQRKADEEEDLEY----------------- 885 (968)
T ss_dssp HHHHHH---CTTTCCHHHHHHHHHHHTTSTTSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHh---cCCCCCHHHHHHHHHHHHHhhcCCCHHHH-HHHHHHHHHHHHHHHHHHhhhccc-----------------
Confidence 444444 47889999999777655 46666666 566666665655443332222222
Q ss_pred HhhhccCCCCCCCCcccccCccccccCceecCCC-ccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 004806 126 IKQSQICSPVPIPSDFCCPLSLELMTDPVIVASG-QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWC 204 (729)
Q Consensus 126 ~~~~~~~~~~~~p~~f~CpI~~~lm~dPV~~~~G-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~ 204 (729)
.++|++|+|||++++|+|||++|+| +||||.+|++|+.. +.+||+||++|+..+++||++||+.|++||
T Consensus 886 ---------~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 886 ---------GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFK 955 (968)
T ss_dssp ---------CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred ---------cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHH
Confidence 2499999999999999999999998 79999999999987 468999999999999999999999999999
Q ss_pred HHcCC
Q 004806 205 ELNNV 209 (729)
Q Consensus 205 ~~~~~ 209 (729)
.+++.
T Consensus 956 ~~~~~ 960 (968)
T 3m62_A 956 KQKKE 960 (968)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99864
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-20 Score=154.82 Aligned_cols=76 Identities=57% Similarity=1.055 Sum_probs=72.0
Q ss_pred CCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004806 135 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 210 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~ 210 (729)
..+|++|.||||+++|+|||+++|||+||+.||.+|+..+..+||.||+++...++.||..|+++|+.|+++|++.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 4589999999999999999999999999999999999987788999999999999999999999999999999873
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.3e-18 Score=178.16 Aligned_cols=222 Identities=19% Similarity=0.148 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHH-HhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhh
Q 004806 500 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIH-VLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLL 577 (729)
Q Consensus 500 ~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~-lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL 577 (729)
.+-+..|+..|.+++.+.++...+...|++++|+. +|.++++.++..|+++|.+++.+ +..+..+++.|+++.|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45678889999999988788888999999999999 99999999999999999999984 66788899999999999999
Q ss_pred cCC-CHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHH
Q 004806 578 GNG-TPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPV 653 (729)
Q Consensus 578 ~~~-~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~ 653 (729)
++. +..+++.|+++|.||+. ++.+...+++.|+++.|+.+| +.+..++..|+++|.+|+. .++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 964 88999999999999997 456677899999999999999 5788999999999999987 5778999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhC-CCH-HHH---HHhhh-CC-CHHHHHHHHHHHHHhhcC
Q 004806 654 LVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQE-GAV-PPL---VALSQ-SG-TPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 654 Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~-G~v-~~L---v~Ll~-sg-~~rvr~~A~~lL~~L~~~ 721 (729)
|+.+|.+.+..+++.|+.+|.+|+...+......... ..+ ..| .+-++ .. +..+.++|..+|..+-..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999866443333221 112 211 23344 23 467888999999877643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-19 Score=187.05 Aligned_cols=80 Identities=33% Similarity=0.466 Sum_probs=75.1
Q ss_pred CCCCCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 004806 132 CSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL 211 (729)
Q Consensus 132 ~~~~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~~ 211 (729)
....++|++|.||||+++|+|||+++|||||||.||++||..++.+||+||++++..+|+||..|+++|+.|+.+|||.+
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~ 279 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence 35678999999999999999999999999999999999999876779999999999999999999999999999999864
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=176.05 Aligned_cols=182 Identities=21% Similarity=0.212 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHH-hhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHh
Q 004806 540 SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVD-LLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDL 617 (729)
Q Consensus 540 ~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~L 617 (729)
+.+.+..|+..|.+++.+.++...+...|+++.|+. +|.++++.++..|+++|.|++. ++.++..+++.|+++.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 356788999999999998889888998999999999 9999999999999999999987 56788899999999999999
Q ss_pred cC--CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHH
Q 004806 618 MD--PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVP 694 (729)
Q Consensus 618 L~--~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~ 694 (729)
|. ++..++..|+++|.||+. ++.+...+.+.|+++.|+.+|.+++..++..|+|+|.+|+.++++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 94 467899999999999997 556678899999999999999999999999999999999999888999999999999
Q ss_pred HHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 695 PLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 695 ~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.|+.++.++++.+++.|..+|.+|...
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999888654
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.6e-19 Score=154.05 Aligned_cols=74 Identities=28% Similarity=0.443 Sum_probs=65.8
Q ss_pred CCCcccccCccccccCceecC-CCccccHHHHHHHHhcC-----CCCCCCCCc--c-CCCCCCcccHHHHHHHHHHHHHc
Q 004806 137 IPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-----LFVCPKTRQ--T-LAHTTLIPNYTVKALIANWCELN 207 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-----~~~cP~t~~--~-l~~~~l~pN~~l~~~I~~~~~~~ 207 (729)
.+++|.||||+++|+|||+++ |||+|||.||++||..+ ..+||+|+. . ++..+|+||..|+++|+.|+..+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 688999999999999999996 99999999999999864 357999544 4 88899999999999999999887
Q ss_pred CCC
Q 004806 208 NVK 210 (729)
Q Consensus 208 ~~~ 210 (729)
+-.
T Consensus 84 ~r~ 86 (94)
T 2yu4_A 84 HRH 86 (94)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-16 Score=134.73 Aligned_cols=77 Identities=23% Similarity=0.439 Sum_probs=69.0
Q ss_pred CCCCCCcccccCccccccCceecC-CCccccHHHHHHHHhcC-CCCCCCCCccC-CCCCCcccHHHHHHHHHHHHHcCCC
Q 004806 134 PVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-LFVCPKTRQTL-AHTTLIPNYTVKALIANWCELNNVK 210 (729)
Q Consensus 134 ~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-~~~cP~t~~~l-~~~~l~pN~~l~~~I~~~~~~~~~~ 210 (729)
...++++|.||||+++|.|||+++ |||+||+.||.+||... ..+||.||+++ ....+.||..|+++|+.|...+++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 446889999999999999999999 99999999999999754 46799999997 5679999999999999999987653
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-16 Score=126.72 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=50.1
Q ss_pred cccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccH
Q 004806 140 DFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 194 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~ 194 (729)
.|+||||+++|+|||++ +|||+|||.+|++|+..+ .+||+||++|+.++|+||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence 58999999999999999 999999999999999875 4699999999999999985
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.3e-15 Score=135.04 Aligned_cols=70 Identities=16% Similarity=0.317 Sum_probs=64.0
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCC-CCCcccHHHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-TTLIPNYTVKALIANWCEL 206 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~-~~l~pN~~l~~~I~~~~~~ 206 (729)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.||+++.. ..+.||..|+++|+.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 467799999999999999999999999999999999766689999999987 7899999999999998643
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-14 Score=146.18 Aligned_cols=70 Identities=13% Similarity=0.229 Sum_probs=63.7
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCC--CCccCCCCCCcccHHHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPK--TRQTLAHTTLIPNYTVKALIANWCEL 206 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~--t~~~l~~~~l~pN~~l~~~I~~~~~~ 206 (729)
...+|.||||+++|+|||+. .|||+|||.||.+||..+ ..+||+ |++++...+|+||..|+++|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 46789999999999999985 999999999999999874 346999 99999999999999999999999764
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-12 Score=144.92 Aligned_cols=272 Identities=20% Similarity=0.233 Sum_probs=215.6
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhc-CCc
Q 004806 443 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHS--SETKIQENAVTALLNLSI-NDN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s-~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s--~d~~v~e~Al~aL~nLs~-~~~ 518 (729)
...|+.|++.+.+ .-.+.++.|+..|+.+++. .+..+ ..++++.|+..|+. .|.++...++.+|.++.. +++
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 6789999999984 4678899999999999884 44443 35789999999976 488999999999988743 221
Q ss_pred c-----------------HHH-HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc--chhhhhhcc-CcHHHHHHhh
Q 004806 519 N-----------------KSA-IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE--DNKIKIGRS-GAIGPLVDLL 577 (729)
Q Consensus 519 ~-----------------k~~-I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~--e~k~~I~~~-g~I~~Lv~LL 577 (729)
. ... +.+.+.|+.|+.+|++.+..+|.+++.+|..|+... .++..|... ++|+.|+++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 1 112 234589999999999999999999999999998743 367778754 9999999999
Q ss_pred cCCCHHHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCc-chHHHHHhCCc
Q 004806 578 GNGTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-----PAAGMVDKAVAVLANLATIP-DGRVAIGQENG 650 (729)
Q Consensus 578 ~~~~~~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL~-----~~~~v~e~Al~~L~nLa~~~-e~r~~i~~~g~ 650 (729)
.+....++..|+.+|.+|+....+.++++. +|+++.|+.++. ....++..++.+|.||...+ .++..+.+.++
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 999999999999999999998888888777 699999999993 23467899999999999954 57888889999
Q ss_pred HHHHHHHHccCCH------HHHHH---HHHHHHHHhhCC------HhhHHHHHhCCCHHHHHHhhhCCC--HHHHHHHHH
Q 004806 651 IPVLVEVVELGSA------RGKEN---AAAALLQLCTNS------SRFCSMVLQEGAVPPLVALSQSGT--PRAKEKAQA 713 (729)
Q Consensus 651 I~~Lv~lL~s~s~------~~ke~---A~~aL~nL~~~~------~~~~~~vl~~G~v~~Lv~Ll~sg~--~rvr~~A~~ 713 (729)
++.|..+|..+.+ ....+ +..++.-|+..+ ..++..+.+.|+++.|++++.... ..++..|..
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 9999999875422 12233 566666676652 357788999999999999988753 567777776
Q ss_pred HHHHh
Q 004806 714 LLSYF 718 (729)
Q Consensus 714 lL~~L 718 (729)
++.-+
T Consensus 336 tla~~ 340 (651)
T 3grl_A 336 TVSEV 340 (651)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-14 Score=136.37 Aligned_cols=69 Identities=22% Similarity=0.453 Sum_probs=64.1
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC-CCcccHHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT-TLIPNYTVKALIANWCE 205 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~-~l~pN~~l~~~I~~~~~ 205 (729)
++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.||+++... .+.+|..|+++|+.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999999999999999999998766899999999987 89999999999999873
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.3e-14 Score=123.08 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=64.2
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHc
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 207 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~ 207 (729)
+++++.||||++.|.|||++ +|||+||+.||.+|+..+ .+||.||.++...++.||..|+++|+.|.+..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 35678999999999999998 899999999999999865 67999999999889999999999999998764
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.7e-11 Score=135.68 Aligned_cols=277 Identities=12% Similarity=0.097 Sum_probs=215.2
Q ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccChh-----------------hH-HHHHhcCcHHHHHHHHcCCCHHH
Q 004806 443 ETQVRKLVEDLKS--TSLDTQREATAELRLLAKHNMD-----------------NR-MVIANCGAINILVDMLHSSETKI 502 (729)
Q Consensus 443 ~~~V~~Lv~~L~s--~~~evq~~Al~~L~~La~~s~~-----------------nr-~~I~~~GaI~~Lv~LL~s~d~~v 502 (729)
...++.|+.-|+. .+.++-..++..|.++...++. +. ..+.+.+.|+.|+.+|++.+..+
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 4568888888885 4677778888888766554322 11 23445689999999999999999
Q ss_pred HHHHHHHHHHhhcC-Cc-cHHHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhc
Q 004806 503 QENAVTALLNLSIN-DN-NKSAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLG 578 (729)
Q Consensus 503 ~e~Al~aL~nLs~~-~~-~k~~I~~~-g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~ 578 (729)
+..++.+|..|+.+ +. .+..|... ++|+.|+.+|++....+|-.++.+|.+|+.. .+.++.+...|+++.|+++++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999765 33 67778855 9999999999999999999999999999985 455666666799999999998
Q ss_pred CCC----HHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhcCCC--H------HH--HHHHHHHHHHHhCCc----
Q 004806 579 NGT----PRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMDPA--A------GM--VDKAVAVLANLATIP---- 639 (729)
Q Consensus 579 ~~~----~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL~~~--~------~v--~e~Al~~L~nLa~~~---- 639 (729)
.+. ..+..+|+.+|.||.. +..|+..+.+.|+++.|..+|+.+ . .+ +..++.++..|+...
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 653 3788899999999988 556899999999999999998411 1 22 223677777777631
Q ss_pred ---chHHHHHhCCcHHHHHHHHccC--CHHHHHHHHHHHHHHhhCCHhhHHHHHhCC-----CHHH----HHHhhhCCC-
Q 004806 640 ---DGRVAIGQENGIPVLVEVVELG--SARGKENAAAALLQLCTNSSRFCSMVLQEG-----AVPP----LVALSQSGT- 704 (729)
Q Consensus 640 ---e~r~~i~~~g~I~~Lv~lL~s~--s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G-----~v~~----Lv~Ll~sg~- 704 (729)
.++.++.+.|++..|++++.+. ...++..|+.++..++++++..++.+.+.. ..+. |+.++.+..
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 3477889999999999999764 788999999999999999998888887643 2233 333454444
Q ss_pred HHHHHHHHHHHHHhh
Q 004806 705 PRAKEKAQALLSYFR 719 (729)
Q Consensus 705 ~rvr~~A~~lL~~L~ 719 (729)
..+|-.|..+++.+-
T Consensus 379 ~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 379 FVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677877777777663
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-13 Score=120.45 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=64.5
Q ss_pred CCCcccccCccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHc
Q 004806 137 IPSDFCCPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 207 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~ 207 (729)
+.++|.||||+++|.+||+ ++|||+||+.||.+|+.....+||.||.++...++++|+.+..+++...+..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 4567899999999999999 9999999999999999987668999999999999999999999988876654
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-13 Score=121.14 Aligned_cols=67 Identities=12% Similarity=0.313 Sum_probs=61.4
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCC----CCcccHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT----TLIPNYTVKALIANWC 204 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~----~l~pN~~l~~~I~~~~ 204 (729)
+++++.||||+++|.|||++ +|||+||+.||.+|+..+ .+||.||.++... .+.+|..|+++++.|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 57889999999999999998 999999999999999876 6799999999876 7889999999999874
|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=121.79 Aligned_cols=64 Identities=14% Similarity=0.375 Sum_probs=53.0
Q ss_pred CCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWC 204 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~ 204 (729)
.++|.||||++.|.|||+++|||+||+.||.+|+... .+||+||+++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 4568999999999999999999999999999999865 6799999998653 34566666666554
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-14 Score=120.47 Aligned_cols=65 Identities=23% Similarity=0.431 Sum_probs=57.8
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcC------CCCCCCCCccCCCCCCcccHHHHHHH
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG------LFVCPKTRQTLAHTTLIPNYTVKALI 200 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~------~~~cP~t~~~l~~~~l~pN~~l~~~I 200 (729)
.+.+++.||||++.|.+||+++|||+||+.||.+|+... ..+||.||+++...++.||+.|+++|
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 467899999999999999999999999999999999863 46799999999999999998776543
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-13 Score=117.29 Aligned_cols=66 Identities=27% Similarity=0.466 Sum_probs=58.2
Q ss_pred CCCCCcccccCccccccCceecCCCccccHHHHHHHHhcC-----CCCCCCCCccCCCCCCcccHHHHHHH
Q 004806 135 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLG-----LFVCPKTRQTLAHTTLIPNYTVKALI 200 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~-----~~~cP~t~~~l~~~~l~pN~~l~~~I 200 (729)
..+.++|.||||++.|.+||+++|||+||+.||.+|+... ...||.||+++...++.||+.|+++|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 3467899999999999999999999999999999999873 46799999999999999998766543
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-13 Score=122.61 Aligned_cols=68 Identities=26% Similarity=0.449 Sum_probs=63.1
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANW 203 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~ 203 (729)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.||.++...++.||..+++.|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 57889999999999999999999999999999999988766899999999999999999999988865
|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.9e-13 Score=122.21 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=62.7
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHc
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELN 207 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~ 207 (729)
+.++|.||||+++|.+||++ +|||+||+.||.+|+. ..||.||.++...++.||+.|+++|+.|....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 35679999999999999999 9999999999999998 56999999999899999999999999997654
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
Probab=99.31 E-value=7e-13 Score=128.57 Aligned_cols=69 Identities=22% Similarity=0.434 Sum_probs=61.9
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCC-CCCCcccHHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLA-HTTLIPNYTVKALIANWCE 205 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~-~~~l~pN~~l~~~I~~~~~ 205 (729)
+.+++.||||++.|.+||++ +|||+||+.||.+|+..+..+||.||.++. ...+.||..|+++|..|..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 45678999999999999998 999999999999999986778999999985 4679999999999999854
|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-13 Score=116.36 Aligned_cols=66 Identities=26% Similarity=0.530 Sum_probs=58.1
Q ss_pred CCCCCcccccCccccccCceecCCCccccHHHHHHHHhc-----CCCCCCCCCccCCCCCCcccHHHHHHH
Q 004806 135 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL-----GLFVCPKTRQTLAHTTLIPNYTVKALI 200 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~-----~~~~cP~t~~~l~~~~l~pN~~l~~~I 200 (729)
..+.+++.||||++.|.+||+++|||+||+.||.+|+.. +...||.||+++...++.||+.|+++|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 346789999999999999999999999999999999986 346799999999999999998766543
|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.2e-13 Score=112.19 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=55.3
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHH
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIA 201 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~ 201 (729)
...+++.||||++.|.+||+++|||+||+.||.+|+... .+||.||+++. ..+.||..+...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~-~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT-PRCYICDQPTG-GIFNPAKELMAKLQ 74 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC-SBCSSSCCBCC-SCCEECHHHHHHHS
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC-CcCCCcCcccc-ccCCcHHHHHHHHH
Confidence 456789999999999999999999999999999999864 57999999997 68889966655544
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-13 Score=122.14 Aligned_cols=69 Identities=17% Similarity=0.400 Sum_probs=62.3
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCC-------CCCcccHHHHHHHHHHH
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH-------TTLIPNYTVKALIANWC 204 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~-------~~l~pN~~l~~~I~~~~ 204 (729)
...++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.||+++.. .++.+|..|..+|+.|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3456899999999999999999999999999999998767789999999864 67889999999999985
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-12 Score=108.65 Aligned_cols=60 Identities=25% Similarity=0.465 Sum_probs=51.1
Q ss_pred CCCCCCcccccCccccccCceecC-CCccccHHHHHHHHhcC-CCCCCCCCccCC-CCCCccc
Q 004806 134 PVPIPSDFCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-LFVCPKTRQTLA-HTTLIPN 193 (729)
Q Consensus 134 ~~~~p~~f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~-~~~l~pN 193 (729)
...+++++.||||+++|.|||+++ |||+||+.||.+|+... ..+||+||+++. ...+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 345789999999999999999999 99999999999999864 357999999854 4566666
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-12 Score=118.11 Aligned_cols=68 Identities=18% Similarity=0.377 Sum_probs=60.0
Q ss_pred CCcccccCccccccCceecCCCccccHHHHHHHHhcCC--CCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGL--FVCPKTRQTLAHTTLIPNYTVKALIANWCE 205 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~--~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~ 205 (729)
.+++.||||++.|.+||+++|||+||+.||.+|+.... .+||.||+++...++.+|..+.++++.+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 45688999999999999999999999999999998643 479999999999999999887777777754
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-12 Score=105.07 Aligned_cols=56 Identities=7% Similarity=0.261 Sum_probs=50.2
Q ss_pred CCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 004806 135 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 190 (729)
..+++++.||||++.|++||+++|||+||+.||.+|+..+..+||.||+++...++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 34678999999999999999999999999999999997666789999999887654
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-10 Score=116.92 Aligned_cols=224 Identities=12% Similarity=0.044 Sum_probs=161.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
..++.|++.|+++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|.++...+....
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-- 89 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-- 89 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch--
Confidence 357899999999999999999999988752 2478999999999999999999999998864332111
Q ss_pred HhcCCHHHHH-HHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 524 ANANAIEPLI-HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 524 ~~~g~I~~Lv-~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
..++.|. .++.+.++.++..++.+|..+..... .....+++.|+.+|.++++.++..|+.+|.++..
T Consensus 90 ---~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----- 157 (280)
T 1oyz_A 90 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----- 157 (280)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----
Confidence 1223333 24567889999999999998863211 1123568888999999999999999999998743
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.++++.|+.++ +++..++..|+.+|..+.... ..+++.|+.++...++.++..|+.+|..+..
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--- 221 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--- 221 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---
Confidence 35888899988 567788888999998875321 1346788888888888899999988888752
Q ss_pred hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 682 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 682 ~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
..+++.|+.++.+++ ++..|...|..+
T Consensus 222 --------~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 222 --------KRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp --------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred --------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 134555555555433 444555554444
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.4e-12 Score=103.78 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=52.6
Q ss_pred CCCCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 004806 135 VPIPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 193 (729)
..+.+++.||||++.|.|||++ +|||+||+.||.+|+... .+||.||+++...++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-SSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-CcCCCcCcccCccccccc
Confidence 3467899999999999999997 999999999999999874 679999999999888876
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-10 Score=111.21 Aligned_cols=188 Identities=22% Similarity=0.249 Sum_probs=158.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...++.|++.|+++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 4678999999999999999999999987643 368999999999999999999999998874
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
..+.++.|+.+|.+.++.++..|+.+|..+.. ..+++.|+.+|.++++.++..|+.+|.++..
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 23678999999999999999999999998742 4689999999999999999999999999743
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
..+++.|+.++ +++..++..++.+|..+.. ..+++.|..++...++.++..|+.+|.++.....
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 35788999999 5678889999999999853 3457889999999999999999999998877654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.9e-10 Score=110.80 Aligned_cols=188 Identities=22% Similarity=0.255 Sum_probs=158.7
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 485 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 485 ~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
.+.++.|+.+|.++++.++..|+.+|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 4689999999999999999999999988742 368999999999999999999999998874
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHH
Q 004806 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV 643 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~ 643 (729)
..++++.|+.+|.+.++.++..|+.+|.++.. .++++.|+.++ +++..++..|+.+|+.+..
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 24789999999999999999999999998743 35788999998 5778899999999999853
Q ss_pred HHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcC
Q 004806 644 AIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 644 ~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~ 723 (729)
...++.|..++...++.++..|+.+|..+.. ..+++.|..+++++++.+|..|...|..+.....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2478999999999999999999999998843 2357889999999999999999999998877543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-09 Score=107.81 Aligned_cols=184 Identities=22% Similarity=0.245 Sum_probs=158.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
....+.+++.|+++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 5678999999999999999999999987643 3579999999999999999999999988742
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
..+++.|+.+|.+.++.++..|+.+|..+.. ..+++.|+.+|.+.++.++..|+.+|.++..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 3678999999999999999999999998742 4689999999999999999999999998742
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
..+++.|+.++ +++..++..|+.+|..+.. ..+++.|..++...++.++..|+.+|..+-
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 46888999999 5678889999999999842 236888999999999999999999998754
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.1e-12 Score=122.49 Aligned_cols=67 Identities=27% Similarity=0.459 Sum_probs=62.3
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHH
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIAN 202 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~ 202 (729)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.||.++...++.||..+++.|..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 5789999999999999999999999999999999998766689999999999999999999888875
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-11 Score=102.97 Aligned_cols=56 Identities=20% Similarity=0.583 Sum_probs=49.4
Q ss_pred CCCCCcccccCccccccCceecCCCccccHHHHHHHHhc--CCCCCCCCCccCCCCCC
Q 004806 135 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t~~~l~~~~l 190 (729)
..+++++.||||++.|.+||+++|||+||+.||.+|+.. +..+||.||+++...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 347789999999999999999999999999999999973 44579999999887654
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=6e-12 Score=114.67 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=56.6
Q ss_pred CCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCc-ccHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI-PNYTVKALIAN 202 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~-pN~~l~~~I~~ 202 (729)
++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.||.++...++. ++..+.+++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4567899999999999999999999999999999998667899999999887776 45666666644
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-09 Score=106.75 Aligned_cols=184 Identities=22% Similarity=0.253 Sum_probs=158.2
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 565 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~ 565 (729)
+..+.++.+|.++++.++..|+.+|..+.. .+.++.|+.+|.++++.++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence 678899999999999999999999988742 367999999999999999999999998763
Q ss_pred ccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHH
Q 004806 566 RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVA 644 (729)
Q Consensus 566 ~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~ 644 (729)
...+++.|+.+|.+.++.++..|+++|.++.. ..+++.|+.++ +++..++..|+.+|+.+..
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 24689999999999999999999999998743 34788899998 5778899999999998853
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 645 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 645 i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
...++.|..++...++.++..|+.+|..+.. + .+++.|..++.++++.+|..|...|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999998832 2 268889999999999999999999988764
|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=100.68 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=50.3
Q ss_pred CcccccCccc-cccCc----eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 004806 139 SDFCCPLSLE-LMTDP----VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 139 ~~f~CpI~~~-lm~dP----V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 193 (729)
+++.||||++ .|.+| |+++|||+||+.||.+|+..+...||.||+++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 6789999999 99999 5789999999999999998776789999999999888876
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-12 Score=120.20 Aligned_cols=67 Identities=10% Similarity=0.283 Sum_probs=57.8
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCC---------CCCCcccHHHHHHHHH
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA---------HTTLIPNYTVKALIAN 202 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~---------~~~l~pN~~l~~~I~~ 202 (729)
.++++|.||||+++|++||+++|||+||+.||.+|+..+..+||.||.++. ...+.|+..+++.|..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 478899999999999999999999999999999999877668999998753 2356688888888763
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=5e-11 Score=96.27 Aligned_cols=46 Identities=24% Similarity=0.653 Sum_probs=41.7
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhc--CCCCCCCC
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKT 181 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t 181 (729)
.+.+++.||||++.|.+||+++|||+||+.||.+|+.. +..+||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46789999999999999999999999999999999985 44579987
|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-11 Score=99.79 Aligned_cols=58 Identities=17% Similarity=0.441 Sum_probs=52.3
Q ss_pred CCCCcccccCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccH
Q 004806 136 PIPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 194 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~ 194 (729)
...+++.||||++.|.+| ++++|||+||+.||.+|+... .+||.||+++...++.|++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence 356789999999999999 899999999999999999876 5799999999998888764
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.05 E-value=8.4e-09 Score=106.99 Aligned_cols=198 Identities=13% Similarity=0.066 Sum_probs=155.9
Q ss_pred HhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhh
Q 004806 483 ANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKI 562 (729)
Q Consensus 483 ~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~ 562 (729)
...+.++.|+.+|.++++.++..|+++|.++. ..+.++.|+.+|.+.++.++..|+.+|..+.......
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~- 88 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE- 88 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence 34578999999999999999999999999885 1346889999999999999999999999886432211
Q ss_pred hhhccCcHHHHHH-hhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc
Q 004806 563 KIGRSGAIGPLVD-LLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP 639 (729)
Q Consensus 563 ~I~~~g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~ 639 (729)
...++.|.+ ++.+.++.++..|+++|.++.. .+.. ...+++.|+.++ +++..++..|+.+|+++..
T Consensus 89 ----~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 89 ----DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-- 157 (280)
T ss_dssp ----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred ----hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--
Confidence 013344442 4567899999999999999864 2211 224678888888 5778888999999987753
Q ss_pred chHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 640 DGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 640 e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
..+++.|+.++...++.++..|+++|..+....+ .+++.|..++.++++.+|..|...|..+.
T Consensus 158 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3579999999999999999999999999865444 25788999999999999999999998775
|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-10 Score=98.98 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=48.4
Q ss_pred CCCCCCcccccCccccccC----ceecCCCccccHHHHHHHHhcC--CCCCCCCCccCCCC
Q 004806 134 PVPIPSDFCCPLSLELMTD----PVIVASGQTYERAFIKKWIDLG--LFVCPKTRQTLAHT 188 (729)
Q Consensus 134 ~~~~p~~f~CpI~~~lm~d----PV~~~~G~ty~r~~I~~~~~~~--~~~cP~t~~~l~~~ 188 (729)
...+.+++.||||++.|.+ |++++|||+||+.||.+|+... ..+||.||+++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3456788999999999999 9999999999999999999875 45799999988654
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.1e-11 Score=98.73 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=47.0
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
...+++.||||++.|.+||+++|||+||+.||.+|+..+ .+||+||+++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPEDF 63 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHhh
Confidence 346789999999999999999999999999999999875 67999999886543
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.8e-10 Score=132.18 Aligned_cols=270 Identities=16% Similarity=0.090 Sum_probs=192.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~--~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
...++.|++.+++.+..++..|+.+|..+....+. .+.. .++++.|+.++.++++.++..|+.+|.+|+.....
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~- 248 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD- 248 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH-
Confidence 56788999999999999999999999988765332 1211 26788899999999999999999999999753211
Q ss_pred HHHHh--cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhc--cCcHHHHHHhh-----------cC------
Q 004806 521 SAIAN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLL-----------GN------ 579 (729)
Q Consensus 521 ~~I~~--~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL-----------~~------ 579 (729)
.+.. .+.++.++.++.+.++.++..|+.++..++.....+..+.. ...++.|+..+ .+
T Consensus 249 -~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~ 327 (852)
T 4fdd_A 249 -RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSG 327 (852)
T ss_dssp -HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-------
T ss_pred -HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccc
Confidence 1111 24677888888888899999999999999875444332221 25567777766 22
Q ss_pred -----CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHH
Q 004806 580 -----GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPV 653 (729)
Q Consensus 580 -----~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~ 653 (729)
.+..+++.|+.+|..|+..... .++ ..+++.+..++ +++..+++.|+.+|++++........-.-...++.
T Consensus 328 ~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~ 404 (852)
T 4fdd_A 328 GDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPH 404 (852)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 1224678888888888753221 111 23566666666 56789999999999999985443211122456889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 654 LVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 654 Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
|+..+...++.++..|+++|.+++...+.......-.++++.|+..+.+.++++++.|.++|..|..
T Consensus 405 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987532211011112467888888888899999999999988764
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-10 Score=90.63 Aligned_cols=46 Identities=28% Similarity=0.696 Sum_probs=41.5
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhc--CCCCCCCC
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKT 181 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~--~~~~cP~t 181 (729)
.+.+++.||||++.|++||+++|||+||+.||.+|+.. +..+||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46788999999999999999999999999999999865 55679987
|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.9e-11 Score=94.71 Aligned_cols=54 Identities=17% Similarity=0.431 Sum_probs=48.9
Q ss_pred CcccccCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 004806 139 SDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 139 ~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 193 (729)
+++.||||++.|.+| ++++|||+||+.||.+|+... .+||.||+++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-CCCCCCCccCCccceeee
Confidence 468899999999998 889999999999999999874 679999999998888775
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-09 Score=128.39 Aligned_cols=274 Identities=16% Similarity=0.116 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHH--HH--hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV--IA--NCGAINILVDMLHSSETKIQENAVTALLNLSINDN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~--I~--~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~ 518 (729)
...++.|++.+.+++..++..++..|..++...+..... +. -...++.|+.++.+.++.++..|+.+|.++.....
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 467899999999999999999999999998754322110 00 12467778888888999999999999987764322
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY 598 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~ 598 (729)
....-.-...++.|+.++.+++++++..|+.+|..|+........-.-.++++.++.++.+.+..++..|+.++.+++..
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 11110112567888889999999999999999999986322111111125788888888999999999999999999875
Q ss_pred cHHHHHHHH---cCcHHHHHHhcC-----------C------------CHHHHHHHHHHHHHHhCCcchHHHHHhCCcHH
Q 004806 599 HENKARIVQ---AGAVKHLVDLMD-----------P------------AAGMVDKAVAVLANLATIPDGRVAIGQENGIP 652 (729)
Q Consensus 599 ~en~~~lv~---~G~V~~Lv~LL~-----------~------------~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~ 652 (729)
...+. .+. ..+++.|+..+. + ...++..|..+|..|+..... .+. ...++
T Consensus 287 ~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~ 362 (852)
T 4fdd_A 287 PICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILP 362 (852)
T ss_dssp TTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHH
Confidence 43332 222 345667766651 1 123466677777777753211 111 13577
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 653 VLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 653 ~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.+..++.+.+...++.|+++|.+++....+.... .-.++++.|+.++.+.++++|..|.++|..+..+
T Consensus 363 ~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 363 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 7888888889999999999999999887643222 2245789999999999999999999999887653
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
Probab=98.95 E-value=5.2e-10 Score=94.56 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=47.7
Q ss_pred CCCCcccccCccccc--cCceecC--CCccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 004806 136 PIPSDFCCPLSLELM--TDPVIVA--SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTL 190 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm--~dPV~~~--~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l 190 (729)
.+.+++.||||++.| .||++.+ |||+||+.||.+||..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 367889999999999 5777776 999999999999998776789999999987654
|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.5e-10 Score=91.94 Aligned_cols=52 Identities=15% Similarity=0.438 Sum_probs=46.5
Q ss_pred CCCCCcccccCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 135 VPIPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
..+++++.||||++.|.+| |+++|||+||+.||.+|+... .+||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC-SSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC-CCCCCCCCccCc
Confidence 3467889999999999999 899999999999999999874 679999998864
|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.91 E-value=8.7e-10 Score=92.82 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=49.7
Q ss_pred CCCCcccccCccccccCc---eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 004806 136 PIPSDFCCPLSLELMTDP---VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dP---V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 193 (729)
...+++.||||++.|.+| ++++|||+||+.||.+|+... .+||+||+++...++.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence 456789999999999987 456999999999999999865 679999999998888776
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-08 Score=112.13 Aligned_cols=263 Identities=13% Similarity=0.109 Sum_probs=175.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...++.+...+++.++.++..|+..|..++...... ......++.|..++.++++.++..|+.+|..++..-...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--
Confidence 456778888888999999999999999998754321 223478899999999999999999999999886432111
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc--H
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH--E 600 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~--e 600 (729)
......++.+..++.+.+..+|..++.+|..++..-.. ......+++.++.++++.++.++..|+.+|..++..- +
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 12235788888899888999999999999998753111 1123467899999999999999999999999887632 2
Q ss_pred HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 601 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
.+....-..+++.+..++ +.+..++..++.+|..++..-.. .. .....++.+..++...++.++..|+.+|..++..
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH-hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence 222223355677777777 46677888888777777642111 11 1123567777777777777777777777666653
Q ss_pred CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHH
Q 004806 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717 (729)
Q Consensus 680 ~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~ 717 (729)
.+.. . .....++.|..++.+.+.++|..+..+|..
T Consensus 394 ~~~~--~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~ 428 (588)
T 1b3u_A 394 IGIR--Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428 (588)
T ss_dssp SCHH--H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred cCHH--H-HHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 2210 0 011234444444444444444444444433
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-08 Score=113.98 Aligned_cols=264 Identities=12% Similarity=0.037 Sum_probs=194.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...++.+...+++.++.++..++..|..++..-.. .. .....++.|..+|.+.+++++..++.+|..+...-...
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-- 397 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-- 397 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--
Confidence 45678888888899999999999999888763211 11 12357889999999999999999999988875321111
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
......++.|..++.+.+..+|..++.+|..++..-.. .......++.++.+|.+.+..++..|+.+|..++..-...
T Consensus 398 ~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 475 (588)
T 1b3u_A 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch
Confidence 11235678888999888999999999999988752111 1222356888999999999999999999999987632221
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.....+++.|+.++ +++..++..++.++..++..-. . .......++.|+.++...++.++..++.+|..++..-+
T Consensus 476 --~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 476 --WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-Q-DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp --HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-H-HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred --hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-H-HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc
Confidence 22345778888877 4677888889999998876311 1 12334578899999998999999999999999997543
Q ss_pred hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 682 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 682 ~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
. ......+++.|..++.+.+..+|..|..+|..+..
T Consensus 552 ~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 552 N---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp H---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred h---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 2 12223467778888778889999999999988753
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-08 Score=109.86 Aligned_cols=274 Identities=12% Similarity=0.067 Sum_probs=188.8
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccC-hhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHN-MDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s-~~nr~~I~~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~~ 517 (729)
...++.|++.+.++ ++.++..|+..|..++... +..-... -...++.|+.+|.+. ++.++..|+.+|.++...-
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46789999999988 8899999999999998743 1110000 124778888999887 7999999999999875321
Q ss_pred c-cH-HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcch--hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 518 N-NK-SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN--KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 518 ~-~k-~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~--k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
. +- ......-.++.|...+.+.+.+++..++.+|..++..... +..+ ...+++.++..+++.+..++..|+..+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 1 00 0001111356666777788899999999999998763221 1111 1167788888888889999999999988
Q ss_pred hcccCcHHHH------------------HHHH---cCcHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCcchHHH
Q 004806 594 NLSIYHENKA------------------RIVQ---AGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVA 644 (729)
Q Consensus 594 nLs~~~en~~------------------~lv~---~G~V~~Lv~LL~--------~~~~v~e~Al~~L~nLa~~~e~r~~ 644 (729)
.++....... .+++ ..+++.|+..|. .+..++..|+.+|..|+..-.. .
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~ 362 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D 362 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--T
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--H
Confidence 8875321110 0111 335666777662 1245777888888888763221 1
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 645 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 645 i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
+. ...++.+...+.+.+...++.|+.+|..++.+.. +.....+ ..+++.|+.++.+..+++|..|.++|..+..+-
T Consensus 363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 22 2356777778888899999999999999997643 2111111 458999999999999999999999999887653
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=109.44 Aligned_cols=262 Identities=16% Similarity=0.111 Sum_probs=176.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH-H
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK-S 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k-~ 521 (729)
+..++.+.+.+.+.++.++..|+.++..+...+++ .+...++++.|..+|.+.++.++..|+.+|..++.+.... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 56778899999999999999999999999886654 2334578999999999999999999999999997653211 0
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc----
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI---- 597 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~---- 597 (729)
.....+.+..|+..|...++-.+...+.+|..+...+... ...+++.+..+|++.+..++..|++++..+..
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 0011234667777777778888888888887776432211 13567888888888899999999999999864
Q ss_pred CcHHHHHHHHcCcHHHHHHhcCCCHHHHHHHHHHHHHHhC-Ccc------------------h-HHHH------HhCC--
Q 004806 598 YHENKARIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLAT-IPD------------------G-RVAI------GQEN-- 649 (729)
Q Consensus 598 ~~en~~~lv~~G~V~~Lv~LL~~~~~v~e~Al~~L~nLa~-~~e------------------~-r~~i------~~~g-- 649 (729)
.++.... +-..+++.|+.+++++..++-.|+..|..++. +++ . +.++ ....
T Consensus 273 ~~~~~~~-~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv 351 (591)
T 2vgl_B 273 DSDYYNM-LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351 (591)
T ss_dssp TTBSHHH-HHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTH
T ss_pred CHHHHHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhH
Confidence 2232222 22344566666666666777777777776643 110 0 1111 1122
Q ss_pred --cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHH
Q 004806 650 --GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSY 717 (729)
Q Consensus 650 --~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~ 717 (729)
.++.|.+++...+...+..++++|..+|...+.... ..++.|+.++....+.++..+...++.
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ 416 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRD 416 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 245556666678899999999999999977653221 235566666666555555554444433
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-08 Score=116.25 Aligned_cols=192 Identities=12% Similarity=0.095 Sum_probs=152.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHH-HHhhcCCCHHHHHHHHHHHHhccc--CcHHHH
Q 004806 527 NAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPL-VDLLGNGTPRGKKDAATALFNLSI--YHENKA 603 (729)
Q Consensus 527 g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~L-v~LL~~~~~~v~~~Al~aL~nLs~--~~en~~ 603 (729)
..|.++++.|++++++.|..|+.+|.+|+.++..+..+...++|..+ ..+|.+.+..++..|+++|.||+. ..+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 45667888899999999999999999999988888888888888875 467888999999999999999987 467889
Q ss_pred HHHHcCcHHHHHHhcCC---------------C-------HHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHcc
Q 004806 604 RIVQAGAVKHLVDLMDP---------------A-------AGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVEL 660 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL~~---------------~-------~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s 660 (729)
.+++.|+++.|..+|.. . ..+.+.++.+|++||. ..+....+...++++.|+.+|..
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 99999999999988720 0 1244678899999997 55567788888899999999854
Q ss_pred ---CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHH---HHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 661 ---GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVP---PLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 661 ---~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~---~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
....++..|+.+|+.++..+....+.+...+... .|..+..... ..+..+.++|.++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 3578999999999999999998888888876433 3333333333 34556677776653
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-09 Score=100.39 Aligned_cols=56 Identities=16% Similarity=0.405 Sum_probs=50.2
Q ss_pred CCCcccccCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 004806 137 IPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 193 (729)
.++++.||||++.|++| |+++|||+||+.||.+|+... .+||+||+++....+.++
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccc
Confidence 36789999999999999 999999999999999999875 579999999988877765
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-08 Score=116.43 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=148.4
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHH-HHhcCCCHHHHHHHHHHHHHhccC--cchhhh
Q 004806 487 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLI-HVLQTGSPEARENAAATLFSLSVI--EDNKIK 563 (729)
Q Consensus 487 aI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv-~lL~s~~~e~r~~Aa~aL~nLS~~--~e~k~~ 563 (729)
.|.+|+..|++.++..+..|+.+|.||+.++..+..+...++|.+++ .+|.+.+.+++..|+++|.||+.. .+.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 35567788999999999999999999998888899999999998865 578888999999999999999974 466788
Q ss_pred hhccCcHHHHHHhhcCCC---------------------HHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc-C-
Q 004806 564 IGRSGAIGPLVDLLGNGT---------------------PRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-D- 619 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~---------------------~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL-~- 619 (729)
+.+.|++++|..+|+... ..+...++.+|.+||. ..+....+...+.++.|+.+| +
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 889999999999986311 1234567889999987 556667788899999999987 2
Q ss_pred --CCHHHHHHHHHHHHHHhCC-cchHHHHHhCCc---HHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 620 --PAAGMVDKAVAVLANLATI-PDGRVAIGQENG---IPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 620 --~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~---I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
....++..|+.+|..|+.. .+....+.+.+. ...++.+.. .+...+..++++|+|+..
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence 3467899999999999984 455666666654 233333333 334456678999999853
|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.7e-09 Score=86.40 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=42.8
Q ss_pred CcccccCccccccCc-eecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTDP-VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~dP-V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
++..||||++.+.+| ++++|||+||+.||.+|+..+ .+||.||+++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence 467899999999998 678999999999999999875 679999998864
|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.1e-09 Score=82.31 Aligned_cols=47 Identities=19% Similarity=0.456 Sum_probs=42.4
Q ss_pred CcccccCccccccC----ceecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 139 SDFCCPLSLELMTD----PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 139 ~~f~CpI~~~lm~d----PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
+++.||||++.|.+ |++++|||+|++.||.+|+..+ .+||.||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 56789999999977 8889999999999999999987 77999998875
|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-09 Score=89.48 Aligned_cols=52 Identities=19% Similarity=0.428 Sum_probs=46.4
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
.+.+++.||||++.|.+ |+++|||+||+.||.+|+.. ..+||.||+++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 46778999999999999 99999999999999999985 467999999987654
|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-09 Score=85.43 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=41.2
Q ss_pred CCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
.+++.||||++.|.+||+++|||+||+.||.+| ...||.||+++...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 467899999999999999999999999999883 45799999987643
|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.3e-09 Score=85.54 Aligned_cols=53 Identities=17% Similarity=0.361 Sum_probs=46.0
Q ss_pred CCCCCcccccCccccccCceec---CCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 135 VPIPSDFCCPLSLELMTDPVIV---ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~---~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
.+..+++.||||++.|.+|+.+ +|||+|++.||.+|+... .+||.||+++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSC
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccc
Confidence 3467789999999999988765 999999999999999876 4799999998653
|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-08 Score=83.52 Aligned_cols=52 Identities=13% Similarity=0.356 Sum_probs=44.1
Q ss_pred CCCCcccccCcccccc---CceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 136 PIPSDFCCPLSLELMT---DPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~---dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
...++..||||++.|. +|++++|||+|++.||.+|+..+ .+||.||.++...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccCc
Confidence 3567789999999884 56789999999999999999876 5699999988653
|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-08 Score=91.93 Aligned_cols=51 Identities=10% Similarity=0.266 Sum_probs=43.6
Q ss_pred CCCcccccCccccccCce------------------ecCCCccccHHHHHHHHhc----CCCCCCCCCccCCC
Q 004806 137 IPSDFCCPLSLELMTDPV------------------IVASGQTYERAFIKKWIDL----GLFVCPKTRQTLAH 187 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV------------------~~~~G~ty~r~~I~~~~~~----~~~~cP~t~~~l~~ 187 (729)
.+.+..||||++.|.+|+ +++|||.|++.||.+|+.. ...+||.||..+..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 455679999999999987 7899999999999999963 34679999998865
|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-08 Score=80.03 Aligned_cols=49 Identities=18% Similarity=0.485 Sum_probs=42.9
Q ss_pred CCCcccccCccccccC---ceecC-CCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 137 IPSDFCCPLSLELMTD---PVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~d---PV~~~-~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
+.++..||||++.|.+ |++++ |||.|++.||.+|+... .+||.||+++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-CcCcCCCCEeE
Confidence 3467889999999999 88887 99999999999999874 67999998764
|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-08 Score=88.18 Aligned_cols=50 Identities=14% Similarity=0.487 Sum_probs=44.4
Q ss_pred CCCcccccCccccccC---ceecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 137 IPSDFCCPLSLELMTD---PVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~d---PV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
..++..||||++.|.+ +++++|||.|++.||.+|+... .+||.||.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-CBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-CcCcCcCccCCC
Confidence 4577899999999988 8889999999999999999865 579999998764
|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-08 Score=85.03 Aligned_cols=49 Identities=12% Similarity=0.365 Sum_probs=43.8
Q ss_pred CCcccccCccccccCc---eecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 138 PSDFCCPLSLELMTDP---VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 138 p~~f~CpI~~~lm~dP---V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.++..||||++.|.+| ++++|||.|++.||.+|+... .+||.||+++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 4678899999999998 778999999999999999875 579999998865
|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=9.7e-09 Score=85.77 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=40.3
Q ss_pred CcccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
+++.||||++.+.|||+++|||+ ||+.|+.+| ..||.||+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 45789999999999999999999 999999999 569999998764
|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-08 Score=109.47 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=44.9
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
...||||.+.+.+||+++|||+||+.||..|+..+..+||.||+++....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 37899999999999999999999999999999865678999999987643
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-07 Score=106.20 Aligned_cols=258 Identities=20% Similarity=0.209 Sum_probs=180.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
.....+++.+.+.+..+++.+...+..++..+++.. .-++..|.+-|.++++.++..|+.+|+++. .++...
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~-- 120 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITE-- 120 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHH--
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHH--
Confidence 456678888889999988888888888877544321 234677777888999999999999998885 222222
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH-
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK- 602 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~- 602 (729)
..++.+..+|.+.++.+|..|+.+|..+.... ...+.+.++++.|..+|.+.++.++..|+.+|..++......
T Consensus 121 ---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 121 ---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp ---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred ---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC--hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 23677899999999999999999999987632 122233478899999999999999999999999998743211
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC--
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN-- 679 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~-- 679 (729)
..-...+.+..|+..+ +.+.-.....+.+|..++..++.. ....++.+..++++.++.+...|++++..+...
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 0001123455666665 455555667777777776532211 123466777777888899999999999998742
Q ss_pred -CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 680 -SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 680 -~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+++....+. ..+.+.|+.++. .++.+|..|...|..+..
T Consensus 272 ~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 272 KDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp BTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence 333333332 235677776654 678888888887777654
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-08 Score=93.34 Aligned_cols=57 Identities=18% Similarity=0.443 Sum_probs=51.1
Q ss_pred CCCcccccCccccccCc-------eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccH
Q 004806 137 IPSDFCCPLSLELMTDP-------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNY 194 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dP-------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~ 194 (729)
-++.+.||||++.|.+| |+++|||+||..||.+|+... .+||+||.++...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeee
Confidence 35789999999999998 889999999999999999876 5799999999988888764
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-06 Score=102.96 Aligned_cols=273 Identities=14% Similarity=0.117 Sum_probs=183.5
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHH-HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Cc
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRM-VIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~-~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~ 518 (729)
...++.+++.+.++ +..++..|+.+|..++..-..+-. .......++.+..++.+.+.+++..|+.+|..+... ..
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 56778888888876 688999999999988753221110 001113577778888888999999999999988643 22
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcch----------------h--hhhh---ccCcHHHHHHhh
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN----------------K--IKIG---RSGAIGPLVDLL 577 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~----------------k--~~I~---~~g~I~~Lv~LL 577 (729)
.-...+....++.++..+.+.++.++..|+..+..++..... + .... -...++.++..|
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 111222336778888888888899999999888888653200 0 0010 024566777777
Q ss_pred cC-------CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcc--hHHHHHh
Q 004806 578 GN-------GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD--GRVAIGQ 647 (729)
Q Consensus 578 ~~-------~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e--~r~~i~~ 647 (729)
.. .+..+++.|+.+|..|+..-.. .++ ..+++.+...+ +.+..+++.|+.+|+.++.... ......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 52 3457888888898888652211 111 23455555666 5678899999999999997432 222222
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhH--HHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 648 ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC--SMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 648 ~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~--~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
...++.|+..+...++.++..|+++|.+++...+... ...+ ..+++.|+..+.+. ++++..|.++|..+...
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 3468899999998999999999999999998754210 0011 13577788888775 89999999988877643
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-06 Score=101.98 Aligned_cols=273 Identities=12% Similarity=0.068 Sum_probs=186.1
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcC
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSS--ETKIQENAVTALLNLSIN 516 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~~I~~--~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~ 516 (729)
...++.|+..+.++ ++.++..++..|..++..-. ...+.. ...++.|...+.++ +..++..|+.+|.++...
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999988 88999999999999887421 111222 25677788888776 689999999999988642
Q ss_pred -Ccc-HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 517 -DNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 517 -~~~-k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
..+ .........++.+...+...+.+++..++.+|..+.... ..-.......+++.++..+.+.+..++..|+.++.
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 111 000111125667777787888999999999999887632 21111222367888888888888999999999888
Q ss_pred hcccCcHH---------------------HHHHHHcCcHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCcchHHH
Q 004806 594 NLSIYHEN---------------------KARIVQAGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVA 644 (729)
Q Consensus 594 nLs~~~en---------------------~~~lv~~G~V~~Lv~LL~--------~~~~v~e~Al~~L~nLa~~~e~r~~ 644 (729)
+++..... ..+-.-..+++.++.++. .+..++..|+.+|..|+..-.. .
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~ 362 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--h
Confidence 88653210 000001335667777762 2345777788888877753221 1
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 645 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 645 i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
+. ...++.+...+.+.+..+++.|+.+|..++.... +.....+ ..+++.|+..+.+..+.+|..|.++|..+...
T Consensus 363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 11 1345666677778899999999999999998653 3222222 34789999999998999999999999888764
|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.9e-08 Score=81.13 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=39.3
Q ss_pred CcccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAHT 188 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~~ 188 (729)
+++.||||++.+.+||+++|||+ ||+.|+.++ ..||+||+++...
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence 45679999999999999999999 999999643 5699999998653
|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=3.1e-08 Score=86.52 Aligned_cols=67 Identities=13% Similarity=0.321 Sum_probs=50.3
Q ss_pred CCcccccCccccccCceec---CCCccccHHHHHHHHhc----C---CCCCCC--CCcc--CCCCCCcccHHHHHHHHHH
Q 004806 138 PSDFCCPLSLELMTDPVIV---ASGQTYERAFIKKWIDL----G---LFVCPK--TRQT--LAHTTLIPNYTVKALIANW 203 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~---~~G~ty~r~~I~~~~~~----~---~~~cP~--t~~~--l~~~~l~pN~~l~~~I~~~ 203 (729)
.+.|.||||++.+.+|+++ +|||+||+.||.+||.. + ...||. |+.. ++...+ .+....+++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHH
Confidence 3578999999999999875 79999999999999973 3 235999 9987 554332 233335667777
Q ss_pred HH
Q 004806 204 CE 205 (729)
Q Consensus 204 ~~ 205 (729)
.+
T Consensus 82 ~~ 83 (94)
T 1wim_A 82 KK 83 (94)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-05 Score=91.96 Aligned_cols=257 Identities=14% Similarity=0.070 Sum_probs=171.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
......++.+.+.+.+.++-+--.+..++..+++... -++..|.+-|.++++.++..|+.+|+++.. + .+
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~----~~ 139 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-S----EM 139 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-H----HH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-H----HH
Confidence 3455666777788887777777777777776543211 246777888889999999999999999962 1 12
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA 603 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~ 603 (729)
....++.+..+|.+.++.+|..|+.+|..+..... .++ .+.++.+..+|.+.++.++..|+.+|..++.......
T Consensus 140 -~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p---~~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 140 -CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP---ELM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp -HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG---GGG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH
T ss_pred -HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh---HHH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH
Confidence 13567888899999999999999999999876221 112 2678888889999999999999999999987543211
Q ss_pred HHHHcCcHHHHHHhcC----------------CCHHHHHHHHHHHHHHhCCcch-H------------------------
Q 004806 604 RIVQAGAVKHLVDLMD----------------PAAGMVDKAVAVLANLATIPDG-R------------------------ 642 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL~----------------~~~~v~e~Al~~L~nLa~~~e~-r------------------------ 642 (729)
... ...++.|+.+|. .++-++..++.+|..++..... .
T Consensus 215 ~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 215 AHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 111 245555555441 1333444455555555442111 0
Q ss_pred -----HHHHh--------CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHH
Q 004806 643 -----VAIGQ--------ENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKE 709 (729)
Q Consensus 643 -----~~i~~--------~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~ 709 (729)
..+.. ..++..|..+|.+.++.++..|+.+|..++...+. +++ .....++.++.+.+..+|+
T Consensus 294 ~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~-~~~~~i~~~l~d~d~~Ir~ 368 (618)
T 1w63_A 294 LYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQ-RHRSTIVDCLKDLDVSIKR 368 (618)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHG-GGHHHHHHGGGSSCHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HHH-HHHHHHHHHccCCChhHHH
Confidence 00110 02456677777777778888888888887765442 122 2456777888888888888
Q ss_pred HHHHHHHHhhcC
Q 004806 710 KAQALLSYFRNQ 721 (729)
Q Consensus 710 ~A~~lL~~L~~~ 721 (729)
.|.++|..+...
T Consensus 369 ~alelL~~l~~~ 380 (618)
T 1w63_A 369 RAMELSFALVNG 380 (618)
T ss_dssp HHHHHHHHHCCS
T ss_pred HHHHHHHHHccc
Confidence 888888777553
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.6e-06 Score=101.43 Aligned_cols=272 Identities=11% Similarity=0.119 Sum_probs=177.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--Cc-
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNM-DNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DN- 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~-~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~--~~- 518 (729)
...++.+.+.+.+.++..+..|+..|..++.... ..-.... ...++.|+..+.+.++.++..++++|..++.. +.
T Consensus 368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T 2bpt_A 368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 4567777778888889999999999999997532 1111111 25788899999999999999999999988642 10
Q ss_pred -cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc--hhhhhhc--cCcHHHHHHhhcCCC--HHHHHHHHHH
Q 004806 519 -NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED--NKIKIGR--SGAIGPLVDLLGNGT--PRGKKDAATA 591 (729)
Q Consensus 519 -~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e--~k~~I~~--~g~I~~Lv~LL~~~~--~~v~~~Al~a 591 (729)
... .-...++.|+..|.+. +.++..|+.+|.+++..-. ....+.. ...++.|+.++.+.+ ..++..++.+
T Consensus 447 ~~~~--~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 447 DPQQ--HLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp CTTT--THHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred CCHH--HHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 000 0123577788888775 8899999999998875311 0111211 356788888887543 7889999999
Q ss_pred HHhcccC-cHHHHHHHHcCcHHHHHHhcCC----------------CHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHH
Q 004806 592 LFNLSIY-HENKARIVQAGAVKHLVDLMDP----------------AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 654 (729)
Q Consensus 592 L~nLs~~-~en~~~lv~~G~V~~Lv~LL~~----------------~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~L 654 (729)
|..+... +......+. ..++.++..+.. ...++..++.+|.+++..-...-.-.-...++.+
T Consensus 524 l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 602 (861)
T 2bpt_A 524 LTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLF 602 (861)
T ss_dssp HHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred HHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9988762 222222222 355556555421 2235567888888887632210000112356777
Q ss_pred HHHHccCCH-HHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 655 VEVVELGSA-RGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 655 v~lL~s~s~-~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+.++...+. .+++.++.++..++...+......+. ..++.|...+....+.++..|..++..+..
T Consensus 603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 888877666 78999999998888654322111121 268888888877778889888888776543
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=6.8e-06 Score=95.53 Aligned_cols=220 Identities=14% Similarity=0.099 Sum_probs=148.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc-HH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN-KS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~-k~ 521 (729)
+..++.+.+.|++.++.++..|+.++..+...+++.. .++++.|..+|.+.|+.++..|+.+|..++..... ..
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 5668889999999999999999999999998776432 26788889999999999999999999998754221 11
Q ss_pred HHHhcCCHHHHHHHhcC---------------CCHHHHHHHHHHHHHhccCcch-hhhh---------------------
Q 004806 522 AIANANAIEPLIHVLQT---------------GSPEARENAAATLFSLSVIEDN-KIKI--------------------- 564 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s---------------~~~e~r~~Aa~aL~nLS~~~e~-k~~I--------------------- 564 (729)
.+ ...++.++.+|.. .++-.+...+.+|..++..+.. ...+
T Consensus 216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 11 2556666666542 2455666666666665542211 0000
Q ss_pred --------h--------ccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHH
Q 004806 565 --------G--------RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDK 627 (729)
Q Consensus 565 --------~--------~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~ 627 (729)
+ ...++..|..+|.+.++.++..|+.+|..+..... .++. .....++..+ +++..++..
T Consensus 294 ~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d~d~~Ir~~ 369 (618)
T 1w63_A 294 LYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKDLDVSIKRR 369 (618)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccCCChhHHHH
Confidence 0 01245566666666667777777777776654211 1222 2444566666 567888888
Q ss_pred HHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 628 AVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 628 Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
|+.+|..|+..... .. .+..|.+.+...+...+..++.+|..+|..
T Consensus 370 alelL~~l~~~~nv-~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 370 AMELSFALVNGNNI-RG-----MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHCCSSST-HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcccccH-HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999888874332 11 357777888888889999999999998875
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.34 E-value=8.9e-06 Score=96.84 Aligned_cols=275 Identities=12% Similarity=0.079 Sum_probs=184.1
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChhhHHHHH--hcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcC-
Q 004806 443 ETQVRKLVEDLKST-SLDTQREATAELRLLAKHNMDNRMVIA--NCGAINILVDMLHSS--ETKIQENAVTALLNLSIN- 516 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~-~~evq~~Al~~L~~La~~s~~nr~~I~--~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~- 516 (729)
...++.|++.+.++ ++.++..++..|..++..-......+. ....++.|+..|.+. ++.++..|+.+|.++...
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999988 889999999999988874221100000 113567777788876 899999999999887421
Q ss_pred Ccc-HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh-hhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 517 DNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-IKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 517 ~~~-k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k-~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
..+ .........++.|...+.+.+.+++..++.+|..++...... ........++.++..+.+.+..++..|+.++..
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 110 000011235666777888888999999999999887532111 111111566677777888899999999999988
Q ss_pred cccCcHHHH-----------------HHHHcCcHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCcchHHHHHhCC
Q 004806 595 LSIYHENKA-----------------RIVQAGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVAIGQEN 649 (729)
Q Consensus 595 Ls~~~en~~-----------------~lv~~G~V~~Lv~LL~--------~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 649 (729)
++....... .-.-..+++.|+..|. .+..++..+..+|..++..-.. .+. ..
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~-~~ 369 (861)
T 2bpt_A 293 ICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL-EP 369 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH-HH
T ss_pred HHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHH-HH
Confidence 876431110 0011456777777773 1246777888888888763211 111 12
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.++.+...+.+.+...++.|+.+|..++.... +.....+. .+++.|+..+.+.++.+|..|.++|..+...
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 35666667777889999999999999997643 32222222 4788899999988999999999988777654
|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-07 Score=74.79 Aligned_cols=50 Identities=20% Similarity=0.182 Sum_probs=43.9
Q ss_pred CCCcccccCccccccCceec--CCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 137 IPSDFCCPLSLELMTDPVIV--ASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~--~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
-+++..|+||++-++|+|++ ||||. ||..|+.+|+..+ ..||+||+++..
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchhc
Confidence 34677899999999999988 99999 8999999999865 579999998753
|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.4e-07 Score=77.67 Aligned_cols=48 Identities=15% Similarity=0.332 Sum_probs=40.7
Q ss_pred CcccccCccccccC--------------ceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTD--------------PVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~d--------------PV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+... .+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence 56679999999988 4455 599999999999999876 589999998754
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.29 E-value=3.6e-06 Score=92.41 Aligned_cols=234 Identities=14% Similarity=0.131 Sum_probs=157.6
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHH-HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRM-VIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNN 519 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~-~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~ 519 (729)
...++.++..|++. +..++..|+.++..+...-..+.. .....-.++.|..++.+.+..++..++.+|..+......
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999877 789999999999886542111100 000111466677777888999999999999988642111
Q ss_pred --HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc------------------hhhhhhc---cCcHHHHHHh
Q 004806 520 --KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED------------------NKIKIGR---SGAIGPLVDL 576 (729)
Q Consensus 520 --k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e------------------~k~~I~~---~g~I~~Lv~L 576 (729)
...+ ..+.++.++..++..+.+++..|+..+..++.... ....+.. ...++.|+..
T Consensus 251 ~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 251 YMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp GCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 1111 11566777788888889999999998888865320 0011111 2456666666
Q ss_pred hcCC-------CHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch--HHHHH
Q 004806 577 LGNG-------TPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG--RVAIG 646 (729)
Q Consensus 577 L~~~-------~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~--r~~i~ 646 (729)
|... +..++..|+.+|..|+..-.. .++ ..+++.+...+ +.+..+++.|+.+|+.++..... -...
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~- 405 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL- 405 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-
Confidence 6532 346888999999988763221 111 34566666677 57788999999999999974321 1111
Q ss_pred hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 647 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 647 ~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
-...++.|+..|...++.++..|+++|.+++...+
T Consensus 406 l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 406 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 14578999999999999999999999999997643
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-05 Score=78.30 Aligned_cols=187 Identities=15% Similarity=0.140 Sum_probs=143.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~ 521 (729)
+..+..|+.+|...+..++.+++..|..+.+..+.......-...++.++.++.++|..+...|+.+|..|-.+ +-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 56788999999999999999999999999887433333333347899999999999999999999999998765 22232
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 601 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en 601 (729)
.+. ..+..|..++.+++.-.+++|+..|..|..... ..+++..+..++.+.+.+++..|+.+|.|++...+.
T Consensus 112 ~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 222 235678888899999999999999999832211 135678888999889999999999999999874432
Q ss_pred HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc
Q 004806 602 KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP 639 (729)
Q Consensus 602 ~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~ 639 (729)
.. +-.+++.-+-.+| ..+..+++.|+.+|..+.+.+
T Consensus 184 ~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 184 SG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 21 1223444566677 468899999999999998864
|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=5.2e-07 Score=72.77 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=42.6
Q ss_pred CcccccCccccccCceec--CCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTDPVIV--ASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~--~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.+..|+||++-++|||++ ||||. ||+.|+.+|+..+ ..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence 456799999999999998 99998 9999999999875 679999998753
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.7e-06 Score=108.07 Aligned_cols=271 Identities=11% Similarity=0.093 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...+..|++.+.+.+.+++..|...|.+..+.....-..-.....++.|+..|.+.++.++..|+.+|.+++..-.. ..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence 35688899999999999999999999876653211000000114577888899989999999999999999754222 11
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh------hhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHhc
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK------IKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNL 595 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k------~~I~~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~nL 595 (729)
-...++.|+..|.+++..+|..|+.+|..++..-... ..-.....++.|+..+. +.+..++..|+.+|..+
T Consensus 84 --~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 --VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp --HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1235677888888888888999999998887521111 11122467899999998 57899999999999998
Q ss_pred ccC-cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCC-HHHHHHHHHH
Q 004806 596 SIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGS-ARGKENAAAA 672 (729)
Q Consensus 596 s~~-~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s-~~~ke~A~~a 672 (729)
+.. ...-.. .-...++.|+..| +++..++..|+.+|..++...... + -...++.|+..|.... ...+..|+.+
T Consensus 162 ~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~ 237 (1230)
T 1u6g_C 162 LSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQC 237 (1230)
T ss_dssp HHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHH
T ss_pred HHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 741 110000 0123555666666 566788999999999998754322 2 2345888888886542 3456677888
Q ss_pred HHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 673 LLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 673 L~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
|..++...+...... -...++.++..++..++.+|+.|..++..+...
T Consensus 238 l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 238 IAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 888876544211000 135788999999888888999988888776553
|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3.3e-07 Score=77.43 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=39.6
Q ss_pred CcccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
++..|+||++.+.|||++||||. ||+.|+.+|+ .||+||+++..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 44679999999999999999999 9999999873 79999998865
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.16 E-value=6.9e-06 Score=102.59 Aligned_cols=230 Identities=13% Similarity=0.120 Sum_probs=160.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH--
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK-- 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k-- 520 (729)
...++.|++.|.+.++.+|..|+.+|..++..-.. ..+ ...++.|+..|.++++.++..|+.+|..++..-...
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 57788999999999999999999999999875433 111 245778888888888899999999998886421111
Q ss_pred ----HHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 521 ----SAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 521 ----~~I~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
..-.....++.|+..+. +++...+..|+.+|..++........-.-...++.|+..|.+.++.++..|+.+|..+
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11123457888999998 5789999999999999874211100001135678888888888999999999999999
Q ss_pred ccCcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHH--hCCcHHHHHHHHccCCHHHHHHHHH
Q 004806 596 SIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIG--QENGIPVLVEVVELGSARGKENAAA 671 (729)
Q Consensus 596 s~~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~--~~g~I~~Lv~lL~s~s~~~ke~A~~ 671 (729)
+...... + -...++.|+..| ..+..++..++.+|..++..... .+. -...++.++..+...++.+++.|+.
T Consensus 203 ~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 203 VMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp TTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 8744322 1 234677787777 22233445567777776652211 121 1346899999998888889999999
Q ss_pred HHHHHhhCCH
Q 004806 672 ALLQLCTNSS 681 (729)
Q Consensus 672 aL~nL~~~~~ 681 (729)
++..++...+
T Consensus 278 ~l~~l~~~~~ 287 (1230)
T 1u6g_C 278 AFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHHHCh
Confidence 9998887644
|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
Probab=98.11 E-value=4.5e-07 Score=97.57 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=40.9
Q ss_pred CCcccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 138 PSDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.+++.||||++.+.+||++||||+ ||+.|+.+| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 356899999999999999999999 999999988 569999998864
|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2.2e-06 Score=76.49 Aligned_cols=47 Identities=15% Similarity=0.317 Sum_probs=40.1
Q ss_pred CcccccCccccccCc------------------eecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 139 SDFCCPLSLELMTDP------------------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 139 ~~f~CpI~~~lm~dP------------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
++-.|+||++-|.+| +.++|||.|.+.||.+|+... .+||.||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-CcCcCCCCcce
Confidence 345799999999987 347999999999999999874 67999999864
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.6e-05 Score=79.04 Aligned_cols=181 Identities=13% Similarity=0.143 Sum_probs=133.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhH-HHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCccHHHHHh
Q 004806 448 KLVEDLKSTSLDTQREATAELRLLAKHNMDNR-MVIANCGAINILVDMLH-SSETKIQENAVTALLNLSINDNNKSAIAN 525 (729)
Q Consensus 448 ~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr-~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~~~~k~~I~~ 525 (729)
.+.+.+.+.++..+..|+..|..+....+... ..+ ...++.|..+|. +.+..++..|+.+|..|+..-...-.-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 46778889999999999999999887632210 001 145778888894 88999999999999999743111001112
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-C-cHH-H
Q 004806 526 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y-HEN-K 602 (729)
Q Consensus 526 ~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~-~en-~ 602 (729)
...++.|+..+.+....+|..|..+|..+...... ...++.|...|++.++.++..++.+|..+.. . ++. -
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 34788999999999999999999999998764221 2467888899999999999999999999644 3 221 1
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
...+ ..+++.|+.+| +....++..|..+|..|+.
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1122 35788888888 5778899999999998875
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00022 Score=82.84 Aligned_cols=252 Identities=12% Similarity=0.130 Sum_probs=167.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHH--cCCCHHHHHHHHHHHHHhhc-CCccH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML--HSSETKIQENAVTALLNLSI-NDNNK 520 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL--~s~d~~v~e~Al~aL~nLs~-~~~~k 520 (729)
-.+..+.+.|++.++.++..|++.|..+.. ++ +. ...++.+..+| .+.++.++..|+.++.++.. +++
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-- 181 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-- 181 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG--
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh--
Confidence 457788889999999999999999999854 22 22 24677888899 88899999999999999864 222
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc----CC-------------CHH
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG----NG-------------TPR 583 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~----~~-------------~~~ 583 (729)
.+-..+.++.|..+|.+.++.++.+|+.+|..++..... .+ ...++.++..|. .+ ++-
T Consensus 182 -~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w 256 (621)
T 2vgl_A 182 -LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPW 256 (621)
T ss_dssp -GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHH
T ss_pred -hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCch
Confidence 111247899999999999999999999999998763221 11 134444444332 21 567
Q ss_pred HHHHHHHHHHhcccC--cHHHHHHHHcCcHHHHHHhc-C-C----------CHHHHHHHHHHHHHHhCCcchHHHHHhCC
Q 004806 584 GKKDAATALFNLSIY--HENKARIVQAGAVKHLVDLM-D-P----------AAGMVDKAVAVLANLATIPDGRVAIGQEN 649 (729)
Q Consensus 584 v~~~Al~aL~nLs~~--~en~~~lv~~G~V~~Lv~LL-~-~----------~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 649 (729)
++...+.+|..++.. ++.+..+.+ .+..++..+ + + ...++-.++.++..+...++.+. .
T Consensus 257 ~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~ 329 (621)
T 2vgl_A 257 LSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----R 329 (621)
T ss_dssp HHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----H
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----H
Confidence 788888888888763 333433333 233333222 1 1 12556667777777653322222 2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhh-CCCHHHHHHHHHHHHHhh
Q 004806 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQ-SGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 650 ~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~-sg~~rvr~~A~~lL~~L~ 719 (729)
++..|..+|.+.++.++..|+..|..++...+. ...+ + .....++..+. +.+..+|.+|.++|..+.
T Consensus 330 ~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~-~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 330 ACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAV-K-THIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH-H-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH-H-HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 456777777777888888888888888876542 1222 2 24666777777 667778888888776654
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=98.00 E-value=9e-05 Score=82.12 Aligned_cols=262 Identities=10% Similarity=0.071 Sum_probs=171.7
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHH--HHHHHHcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcC--CH
Q 004806 455 STSLDTQREATAELRLLAKHNMDNRMVIANCGAIN--ILVDMLHS-SETKIQENAVTALLNLSINDNNKSAIANAN--AI 529 (729)
Q Consensus 455 s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~--~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g--~I 529 (729)
.++.-.+..+...+..++..+......+. ..+. .++..|.. .+...+.-++.+|..|...+..|..+.+.+ .+
T Consensus 136 ~dd~~~ll~a~~l~~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~ 213 (480)
T 1ho8_A 136 GDFQTVLISGFNVVSLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFM 213 (480)
T ss_dssp SSHHHHHHHHHHHHHHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHH
T ss_pred ccchHHHHHHHHHHHHHhccCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchh
Confidence 33444455566665666543322111111 1122 34455554 345567778888988888888898887653 46
Q ss_pred HHHHHHhcC---------------C--CHHHHHHHHHHHHHhccCcchhhhhhccCcH--HHHHHhhcCC-CHHHHHHHH
Q 004806 530 EPLIHVLQT---------------G--SPEARENAAATLFSLSVIEDNKIKIGRSGAI--GPLVDLLGNG-TPRGKKDAA 589 (729)
Q Consensus 530 ~~Lv~lL~s---------------~--~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I--~~Lv~LL~~~-~~~v~~~Al 589 (729)
++++.+++. + ...++++++-++|-|+..++....+...+.. +.|+++++.. ..++.+.++
T Consensus 214 ~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~l 293 (480)
T 1ho8_A 214 PTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCI 293 (480)
T ss_dssp HHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHH
Confidence 777655431 1 2567899999999999988877777666643 6777777754 689999999
Q ss_pred HHHHhcccCc-----HHHH-HHHHcCcHHHHHHhc-C---CCHHHHHHHHHHHHH-------HhCCcchHH---------
Q 004806 590 TALFNLSIYH-----ENKA-RIVQAGAVKHLVDLM-D---PAAGMVDKAVAVLAN-------LATIPDGRV--------- 643 (729)
Q Consensus 590 ~aL~nLs~~~-----en~~-~lv~~G~V~~Lv~LL-~---~~~~v~e~Al~~L~n-------La~~~e~r~--------- 643 (729)
.+|.||.... .... .++..++++ ++..| . .+.++.+..-.+... |++.++...
T Consensus 294 a~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W 372 (480)
T 1ho8_A 294 SIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW 372 (480)
T ss_dssp HHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc
Confidence 9999998743 1112 233445554 55555 2 455555433322222 222222222
Q ss_pred -------HHHh--------C--CcHHHHHHHHcc----------CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHH
Q 004806 644 -------AIGQ--------E--NGIPVLVEVVEL----------GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 696 (729)
Q Consensus 644 -------~i~~--------~--g~I~~Lv~lL~s----------~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~L 696 (729)
.+.. . ..+..|+++|.+ .++.+...||.=|..++++.|..+..+-+.|+-..+
T Consensus 373 SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~V 452 (480)
T 1ho8_A 373 SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADI 452 (480)
T ss_dssp CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHH
T ss_pred CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHH
Confidence 2221 1 137899999973 357788889999999999999888888889999999
Q ss_pred HHhhhCCCHHHHHHHHHHHHHhh
Q 004806 697 VALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 697 v~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
..|+...++++|..|..++..+-
T Consensus 453 M~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 453 MELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998876553
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.98 E-value=7.2e-05 Score=75.75 Aligned_cols=182 Identities=12% Similarity=0.055 Sum_probs=132.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHhcccCcHHHHHHHHc
Q 004806 531 PLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFNLSIYHENKARIVQA 608 (729)
Q Consensus 531 ~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~nLs~~~en~~~lv~~ 608 (729)
.+...+.+.+...|..|+..|..+... +.....- -...++.|..+|. +.+..++..|+.+|..|+..-...-.-.-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 477788889999999999999988753 2211100 1256788888894 899999999999999998521111111223
Q ss_pred CcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC-CHhh-HH
Q 004806 609 GAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN-SSRF-CS 685 (729)
Q Consensus 609 G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~-~~~~-~~ 685 (729)
.+++.|+..+ +.+..+++.+..+|..++..... ...++.|...|.+.++.++..++..|..+... .+.. -.
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 4778888888 67788999999999999875421 12477788888889999999999999996544 3321 11
Q ss_pred HHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 686 MVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 686 ~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
..+. ..++.|+.++.+..+++|..|..+|..|..
T Consensus 172 ~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 172 KLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2222 478999999999999999999998887754
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00043 Score=80.43 Aligned_cols=253 Identities=11% Similarity=0.112 Sum_probs=166.1
Q ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDL--KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L--~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
+..++.+.+.| .+.++.++..|+.++..+.+.+++. +...++++.|..+|.+.|+.++..|+.+|..++....
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~-- 219 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP-- 219 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--
Confidence 56778888888 8889999999999999998866542 2224899999999999999999999999999875321
Q ss_pred HHHHhcCCHHHHHHHhc----CC-------------CHHHHHHHHHHHHHhccCc--chhhhhhccCcHHHHHHhh----
Q 004806 521 SAIANANAIEPLIHVLQ----TG-------------SPEARENAAATLFSLSVIE--DNKIKIGRSGAIGPLVDLL---- 577 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~----s~-------------~~e~r~~Aa~aL~nLS~~~--e~k~~I~~~g~I~~Lv~LL---- 577 (729)
.. -...++.+++.|. .+ ++-.+...+.+|..++..+ +.+..+. ..+..++..+
T Consensus 220 ~~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 220 EE--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPP 295 (621)
T ss_dssp HH--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCC
T ss_pred HH--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCc
Confidence 11 1134455554432 22 4667878888887776532 2222222 2333333322
Q ss_pred -----cCCCH--HHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCC
Q 004806 578 -----GNGTP--RGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQEN 649 (729)
Q Consensus 578 -----~~~~~--~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g 649 (729)
++.+. .+...|+.++..+...++... .++..|..+| ..+..++-.++..|..++........+. .
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~ 368 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--T 368 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--T
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--H
Confidence 11122 677788888888864443222 3566788888 4677888889999999987543223332 3
Q ss_pred cHHHHHHHHc-cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 650 GIPVLVEVVE-LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 650 ~I~~Lv~lL~-s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
....++..|. ..+..++..|+.+|..++.. .+...+ +..|...+...+...++.+...+..+
T Consensus 369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 369 HIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQI-----VAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677778888 88889999999999998854 333333 44455555555666666555544444
|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=6.2e-06 Score=67.48 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=40.4
Q ss_pred CCCcccccCccccccCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 137 IPSDFCCPLSLELMTDPVIVASGQT-YERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~~~G~t-y~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
-.++..|+||++-..|||++||||. ||..|+.+ ...||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3457899999999999999999999 99999984 2579999998865
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.92 E-value=1.6e-06 Score=79.80 Aligned_cols=121 Identities=21% Similarity=0.218 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...++.|+..|++.++.++..|+..|..+.. ..++.|+.+|.++++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3567888999998888888888887765532 136899999999999999999999988752
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
..+++.|+.+|++.++.+|..|+.+|..+. ...+++.|+.+|++.+..++..|+.+|.+|
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 235899999999999999999999999874 246789999999999999999999998764
|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.5e-05 Score=67.38 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=43.3
Q ss_pred CCCcccccCccccc--cCceecCCC-----ccccHHHHHHHHhcCC-CCCCCCCccCCCC
Q 004806 137 IPSDFCCPLSLELM--TDPVIVASG-----QTYERAFIKKWIDLGL-FVCPKTRQTLAHT 188 (729)
Q Consensus 137 ~p~~f~CpI~~~lm--~dPV~~~~G-----~ty~r~~I~~~~~~~~-~~cP~t~~~l~~~ 188 (729)
..++-.|+||++-+ .+|+++||+ |.|-+.||.+|+...+ .+||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34567899999776 579999996 9999999999998753 5799999998653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0013 Score=78.71 Aligned_cols=236 Identities=18% Similarity=0.126 Sum_probs=164.5
Q ss_pred HHHHHHHHhcCCC--------HHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 004806 445 QVRKLVEDLKSTS--------LDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN 516 (729)
Q Consensus 445 ~V~~Lv~~L~s~~--------~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~ 516 (729)
.+..|...|.+.+ +.++..|+..|.....++. ...+++.|..+|.+++..+.+.|+.+|+.+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 4566777776544 5567777778877654431 123577899999888877778888888776444
Q ss_pred CccHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc-CCCHHHHHHHHHHHHh
Q 004806 517 DNNKSAIANANAIEPLIHVL-QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG-NGTPRGKKDAATALFN 594 (729)
Q Consensus 517 ~~~k~~I~~~g~I~~Lv~lL-~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~-~~~~~v~~~Al~aL~n 594 (729)
..+.. ++..|+..+ .+.+..++..++..|.-+. +++...++.+++.|. +.++-++..++.++.-
T Consensus 503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~--------~g~~e~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALIN--------YGRQELADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHT--------TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhh--------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 43332 345666654 3456778888888887663 344577888888876 4677888877777664
Q ss_pred cccCcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHH-ccCCHHHHHHHHH
Q 004806 595 LSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVV-ELGSARGKENAAA 671 (729)
Q Consensus 595 Ls~~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL-~s~s~~~ke~A~~ 671 (729)
-.....|. .+|+.|+..+ +.+..++..|+..|+.++...+ ..++.++.+| .+.++.++..|+.
T Consensus 569 AyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAal 634 (963)
T 4ady_A 569 AYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAF 634 (963)
T ss_dssp HTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred HhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33322222 2556666666 5667888889999998876542 3467777655 5689999999999
Q ss_pred HHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 672 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 672 aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
+|..+|.+++. ..++..|..++.+.++.|++.|...|..+-...
T Consensus 635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 99999988762 124677788888888999999999888876543
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00028 Score=70.80 Aligned_cols=221 Identities=14% Similarity=0.081 Sum_probs=157.2
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIK 563 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~ 563 (729)
+.+..|+.+|...|+.++.+|+.+|..+-.. +.......-...++.++.++++.+..+...|+.+|..|-.+- -....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4677899999999999999999999998643 233333333467999999999999999999999999986532 22222
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchH
Q 004806 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR 642 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r 642 (729)
. .-++..|.+++++++.-....|+..|..|......+ +++..+..++ +.+..+...++.+|.+++...+..
T Consensus 113 y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 F--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp H--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred H--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 2 135678899999999999999999999984432222 2566788888 467888999999999999844322
Q ss_pred HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH--hhHHHHHhCCCHHHHHHhh-hCCCHHHHHHHHHHHHHh
Q 004806 643 VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS--RFCSMVLQEGAVPPLVALS-QSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 643 ~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~--~~~~~vl~~G~v~~Lv~Ll-~sg~~rvr~~A~~lL~~L 718 (729)
..+ .+.+.-+-.+|.+.++..++.|..+|..+....- .....+. ++....-.+. ..|.|.++.+|.-+-..+
T Consensus 185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 111 2345667788999999999999999999887642 1111111 1122222233 467888998887765554
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=75.43 Aligned_cols=186 Identities=11% Similarity=0.145 Sum_probs=132.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hhccChhhHHHHHh-cCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhcC---CccH-H
Q 004806 449 LVEDLKSTSLDTQREATAELRL-LAKHNMDNRMVIAN-CGAINILVDML-HSSETKIQENAVTALLNLSIN---DNNK-S 521 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~-La~~s~~nr~~I~~-~GaI~~Lv~LL-~s~d~~v~e~Al~aL~nLs~~---~~~k-~ 521 (729)
+.+.+.+.++..+.+|+..|.. +....+.......+ ...+..|...| ++.+..++..|+.+|..|+.. +... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456788999999999999999 87543221100011 14577788888 688999999999999999742 1111 1
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh--ccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG--RSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~--~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 599 (729)
. ..-.++.|+..+.+....++..+..+|..++..-+. .... -...++.|+..|++.++.++..++.+|..+....
T Consensus 101 y--~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 101 Y--VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp H--HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 1 123688999999988899999988888888753211 1111 1257888999999999999999999999887532
Q ss_pred H---H-HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 600 E---N-KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 600 e---n-~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
. . -...+....++.|.+++ +++..++..|..+|..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 1 11222357899999999 5788899999988888774
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.77 E-value=2.8e-06 Score=78.02 Aligned_cols=119 Identities=19% Similarity=0.166 Sum_probs=89.9
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 485 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 485 ~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
...++.|+.+|+++++.++..|+.+|.++.. ..++.|+.+|++.++.+|..|+.+|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4678899999999999999999988876531 237899999999999999999999988742
Q ss_pred hccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHH
Q 004806 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLAN 634 (729)
Q Consensus 565 ~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~n 634 (729)
..+++.|+.+|.+.++.++..|+++|.++.. ..+++.|+.++ +++..++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3568999999999999999999999999752 34678899988 4677788888887764
|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.67 E-value=6e-06 Score=74.86 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=0.0
Q ss_pred ccccCccccccCce-----------------e-cCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 141 FCCPLSLELMTDPV-----------------I-VASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 141 f~CpI~~~lm~dPV-----------------~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
-.|+||++-|.+|. + ++|||.|.+.||.+|+... .+||.||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-CcCCCCCCeee
Confidence 47999999998853 2 4899999999999999874 67999999764
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00074 Score=74.86 Aligned_cols=230 Identities=15% Similarity=0.174 Sum_probs=151.4
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcC--cHHHHHHHHcC---------------C--CHHHHHHHH
Q 004806 448 KLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCG--AINILVDMLHS---------------S--ETKIQENAV 507 (729)
Q Consensus 448 ~Lv~~L~s-~~~evq~~Al~~L~~La~~s~~nr~~I~~~G--aI~~Lv~LL~s---------------~--d~~v~e~Al 507 (729)
.++..|.. .+.+.+.-++.+|..|.+ .++.|..+.+.+ .++.++.++.. . ..+++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 45555554 345566678889998888 457888887653 46667654431 1 356789999
Q ss_pred HHHHHhhcCCccHHHHHhcCCH--HHHHHHhcCCC-HHHHHHHHHHHHHhccCc--chhh----hhhccCcHHHHHHhhc
Q 004806 508 TALLNLSINDNNKSAIANANAI--EPLIHVLQTGS-PEARENAAATLFSLSVIE--DNKI----KIGRSGAIGPLVDLLG 578 (729)
Q Consensus 508 ~aL~nLs~~~~~k~~I~~~g~I--~~Lv~lL~s~~-~e~r~~Aa~aL~nLS~~~--e~k~----~I~~~g~I~~Lv~LL~ 578 (729)
-+++-|+.++.....+...+.. +.|+.+++... ..+..-++++|.||.... .... .++..++ ..++..|.
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 9999999987766666655533 56777777544 778889999999998743 1111 2322344 44556555
Q ss_pred CC---CHHHHHHHHH-------HHHhcccCcHHH------------------------HHHHH--cCcHHHHHHhcCC--
Q 004806 579 NG---TPRGKKDAAT-------ALFNLSIYHENK------------------------ARIVQ--AGAVKHLVDLMDP-- 620 (729)
Q Consensus 579 ~~---~~~v~~~Al~-------aL~nLs~~~en~------------------------~~lv~--~G~V~~Lv~LL~~-- 620 (729)
.. ++++..+--. .+..++.+++.+ .++-+ ..++..|+++|+.
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 42 5544332211 223333222222 12222 2367888898852
Q ss_pred ---------CHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 621 ---------AAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 621 ---------~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
++.+..-||.=|+.++. .+.||..+-+.|+=..++++|.+.++.++.+|..++..+..+
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 24455667777888887 889999888889989999999999999999999999876643
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0029 Score=66.98 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
.-.+..+++.|.+++...++.++..|+.+-..+...-..++..||+..|+......+.+++..++.+|.+|-.+......
T Consensus 117 s~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 117 SVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence 35678888999988888999999999984444566777778889999999999999999999999999999887777656
Q ss_pred HH-hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh-cc----------CcHHHHHHhhc---CCCHHHHHH
Q 004806 523 IA-NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG-RS----------GAIGPLVDLLG---NGTPRGKKD 587 (729)
Q Consensus 523 I~-~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~-~~----------g~I~~Lv~LL~---~~~~~v~~~ 587 (729)
++ ....|..|..++.+....+...|+.+|..++.+.+....++ +. -.+..|+.+|+ ..+.+++..
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 65 45789999999998888999999999999987654332222 21 14789999997 678999998
Q ss_pred HHHHHHhccc---CcHHHHHHH----HcCcHHHHHHhc
Q 004806 588 AATALFNLSI---YHENKARIV----QAGAVKHLVDLM 618 (729)
Q Consensus 588 Al~aL~nLs~---~~en~~~lv----~~G~V~~Lv~LL 618 (729)
|+..|-.+.. ..+.+..++ +.|.-..+...+
T Consensus 277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l 314 (339)
T 3dad_A 277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHL 314 (339)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHH
Confidence 8877665533 223233333 355555565556
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0073 Score=72.99 Aligned_cols=260 Identities=15% Similarity=0.149 Sum_probs=180.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh---hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh--cCCc
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD---NRMVIANCGAINILVDMLHSSETKIQENAVTALLNLS--INDN 518 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~---nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs--~~~~ 518 (729)
..+..|.+.++.-... ..|+..+..++..... .--.+. +.++.++..+.+....++..|-.++..+. .++.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 5677777777654333 7888889999865421 112222 67888888888888999988888877764 3343
Q ss_pred cHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcchhhhhhc--cCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 519 NKSAIANANAIEPLIHVLQTG-SPEARENAAATLFSLSVIEDNKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e~k~~I~~--~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
.. ...+|.|+..|.+. ....+..|+.+|..|+... ...+.. ...||.+.+.+-+..+++++.|..++..+
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 32 24588899888765 5899999999999998643 333333 37899999999999999999999999888
Q ss_pred ccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHH
Q 004806 596 SIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674 (729)
Q Consensus 596 s~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~ 674 (729)
|..-.|+. =...||.|++-+ +++. +..++..|..-+...+.-...+. -.+|.|..-|...+...+..++.++-
T Consensus 203 ~~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 203 TETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HhcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH-HHHHHHHhhhccCcchhheeeEEEEc
Confidence 87433322 134688888887 4533 55566666655543332111110 12677777777788899999999999
Q ss_pred HHhhC--CHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHhhcC
Q 004806 675 QLCTN--SSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 675 nL~~~--~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L~~~ 721 (729)
|||.- ++.....++ ...+|.|.+....- .|++|+.|..++..|.+.
T Consensus 277 n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 99984 443333333 45788888877665 599999999988888664
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00063 Score=69.74 Aligned_cols=189 Identities=10% Similarity=0.083 Sum_probs=131.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hccC-cchhhhhhc-cCcHHHHHHhh-cCCCHHHHHHHHHHHHhcccCcH--HHHHH
Q 004806 532 LIHVLQTGSPEARENAAATLFS-LSVI-EDNKIKIGR-SGAIGPLVDLL-GNGTPRGKKDAATALFNLSIYHE--NKARI 605 (729)
Q Consensus 532 Lv~lL~s~~~e~r~~Aa~aL~n-LS~~-~e~k~~I~~-~g~I~~Lv~LL-~~~~~~v~~~Al~aL~nLs~~~e--n~~~l 605 (729)
+...+.+.+..-|..|+..|.. +... .+......+ ...+..|...+ ++.+..++..|+.+|..|+..-. .-..-
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556788899999999999998 7642 221100112 25677888888 78899999999999999984111 11101
Q ss_pred HHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHH--hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHh
Q 004806 606 VQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIG--QENGIPVLVEVVELGSARGKENAAAALLQLCTNSSR 682 (729)
Q Consensus 606 v~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~--~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~ 682 (729)
...-+++.+++.+ +....+++.+..+|..++..-+- .... -...++.|+..|.+.++.+++.++.+|..++...+.
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 1223678888888 45577888888888888763211 0000 012477888888889999999999999998876542
Q ss_pred ---hHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 683 ---FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 683 ---~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
.-...+....++.|..++...++.+|..|.++|..+...
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 122233246899999999999999999999988877543
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.033 Score=53.96 Aligned_cols=212 Identities=12% Similarity=0.154 Sum_probs=142.9
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHHhccCcchhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIHVLQ-TGSPEARENAAATLFSLSVIEDNKIK 563 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv~lL~-s~~~e~r~~Aa~aL~nLS~~~e~k~~ 563 (729)
.++..++.+|.++-..++.+|+.+|.+++.. ++-... .+..|+-+++ +....+....+.++..++.. +..
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i---~Pe 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---KPE 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---CHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHh---CHH
Confidence 5688899999999999999999999998753 332222 2445555554 55577777778888877642 111
Q ss_pred hhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcch
Q 004806 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDG 641 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~ 641 (729)
++ .+.+|.+..=.+-++++++..-..+|..++. +++-- .+++.-+..++. ++..-+-.|+..+..|..+ +
T Consensus 104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~Dkl~aLnFi~alGen--~ 175 (253)
T 2db0_A 104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--S 175 (253)
T ss_dssp HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--T
T ss_pred HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--C
Confidence 21 2556777777788899999999999999876 44432 334556777774 4433333444444444331 1
Q ss_pred HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 642 RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 642 r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
-..+ ...+|.|..+|...+.-++..|+.+|.+++.-+++.+..+. ..+.=+...++-++.+..+.|..+.-.
T Consensus 176 ~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 176 FKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred cccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 2222 34689999999999999999999999999999997665543 223334555667777777766655443
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0067 Score=64.24 Aligned_cols=179 Identities=11% Similarity=0.059 Sum_probs=129.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH-cC
Q 004806 532 LIHVLQTGSPEARENAAATLFS-LSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ-AG 609 (729)
Q Consensus 532 Lv~lL~s~~~e~r~~Aa~aL~n-LS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~-~G 609 (729)
++..|.+++.+.+..++.-|.. ++.+.+....++..+++..|+.+...++...+..++.||.+|..+..+...++. ..
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3444555665666666666666 455677788888899999999999999999999999999999998888877774 66
Q ss_pred cHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcc-hHHHHHh--------CC--cHHHHHHHHc---cCCHHHHHHHHHHHH
Q 004806 610 AVKHLVDLMD-PAAGMVDKAVAVLANLATIPD-GRVAIGQ--------EN--GIPVLVEVVE---LGSARGKENAAAALL 674 (729)
Q Consensus 610 ~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e-~r~~i~~--------~g--~I~~Lv~lL~---s~s~~~ke~A~~aL~ 674 (729)
.|..|..++. ....++..|+.+|..++...+ +...+.+ .| -+..|+.+|. +.+...+.+|+..|-
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 8888988884 567888999999999988554 3322222 11 2789999997 678999999998886
Q ss_pred HHhhCCH--h----hHHHHHhCCCHHHHHHhhhCC--CHHHHHH
Q 004806 675 QLCTNSS--R----FCSMVLQEGAVPPLVALSQSG--TPRAKEK 710 (729)
Q Consensus 675 nL~~~~~--~----~~~~vl~~G~v~~Lv~Ll~sg--~~rvr~~ 710 (729)
.+....+ + ....+-+.|.-..+.+.+... ++..++.
T Consensus 283 ~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 283 KTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 6665533 2 222334456556677766654 3455543
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.01 Score=63.98 Aligned_cols=245 Identities=13% Similarity=0.027 Sum_probs=149.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
.....+++.+.+.+...++-.--.+..+++..++. | =++..|.+=+.++++-++-.|+.+|+++...+ .-.
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m~~-- 138 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-MLQ-- 138 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-THH--
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-HHH--
Confidence 34556677888888888877777777777753221 1 24667777788899999999999999995433 111
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA 603 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~ 603 (729)
...+.+-+.|.+.++.++..|+-+...|.... ... + .+++..+-+++.+.++.+..+|+.+|..+...+..
T Consensus 139 ---~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~-v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-- 209 (355)
T 3tjz_B 139 ---AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDV-V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-- 209 (355)
T ss_dssp ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHH-H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred ---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHH-H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence 23556777888899999999999988886432 222 2 36899999999999999999999999999774421
Q ss_pred HHHHcCcHHHHHHhcCC----CHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 604 RIVQAGAVKHLVDLMDP----AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL~~----~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
++..|+.-+.. ++-.....+.++..++...+. -.....++.|..+|++.++.+...|+.++..+...
T Consensus 210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~ 280 (355)
T 3tjz_B 210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC 280 (355)
T ss_dssp ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence 23334443311 122222233333333322101 11234466777777888999999999999887653
Q ss_pred CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 680 ~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
... + ...++..|..++.+.++.+|-.|...|..+..
T Consensus 281 ~~~----~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 281 SAK----E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred CHH----H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 221 1 13356677777888888888888776655544
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.27 Score=47.74 Aligned_cols=212 Identities=16% Similarity=0.155 Sum_probs=149.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhc-CCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSI-NDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~-~~~~k 520 (729)
+..+..++.+|..+-+.+|.+|+..|..+++.-++...- .+..|+.+|+ ++...+......+++.++. .++--
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 678999999999999999999999999999977665443 3456666664 4555555556777877763 22211
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 599 (729)
.+.+|.|..-.+-|++.++.+...+|..++. +++.-. +++..+..++.+.+..-+..|+..|..|..++
T Consensus 106 -----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 106 -----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp -----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred -----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 2346777777788999999999999998875 333322 45667788888888777778888887775533
Q ss_pred HHHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcch-HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 600 ENKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
- +-+ .-.+|.|..||. .+.-++..|+.+|.+|+...+. |.. |...++-+...|..++......|..|.
T Consensus 176 ~---~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 176 F---KYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp H---HHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred c---ccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 2 212 346788888994 5555667899999999995443 333 233455566778888888777777665
Q ss_pred hC
Q 004806 678 TN 679 (729)
Q Consensus 678 ~~ 679 (729)
.-
T Consensus 246 l~ 247 (253)
T 2db0_A 246 LL 247 (253)
T ss_dssp HC
T ss_pred HH
Confidence 43
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0049 Score=66.38 Aligned_cols=238 Identities=10% Similarity=0.033 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
-.+..|.+.++++++.++-.|++.|..+.-... - ....+.+...|.+.++-|+..|+-+...|... +...+
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m--~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe~v 174 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM--L-----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFDVV 174 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT--H-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHHHH
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH--H-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHHHH
Confidence 467889999999999999999999999876431 1 13466778888999999999999999888643 23333
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC---CHHHHHHHHHHHHhcccCcH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG---TPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~---~~~v~~~Al~aL~nLs~~~e 600 (729)
.+++..+-.++.+.++-++.+|+++|..+...+. .++..|+.-+..+ ++-.+..-++.+..++..++
T Consensus 175 --~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 175 --KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED 244 (355)
T ss_dssp --HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred --HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence 2689999999999999999999999999876431 1445555555443 34444444555555544321
Q ss_pred HHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 601 NKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
. -.....++.|..+|. .+..++-.|+.++..|...+.. +. ..++..|..+|.+.++.++..|+..|..+...
T Consensus 245 ~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 245 G---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ---------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred h---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 0 022334455555663 5677777888888877552221 11 23456777788888899999999999888887
Q ss_pred CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHH
Q 004806 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQ 712 (729)
Q Consensus 680 ~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~ 712 (729)
.|...+. ....|..++.+++-.+..-|.
T Consensus 318 ~P~~v~~-----~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 318 HPSAVTA-----CNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp ---------------------------------
T ss_pred CcHHHHH-----HHHHHHHHccCCcHhHHHHHH
Confidence 7643221 234455566665544444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.68 E-value=0.15 Score=61.27 Aligned_cols=234 Identities=15% Similarity=0.059 Sum_probs=155.6
Q ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC--------HHHHHHHHHHHHH
Q 004806 444 TQVRKLVEDLK---STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE--------TKIQENAVTALLN 512 (729)
Q Consensus 444 ~~V~~Lv~~L~---s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d--------~~v~e~Al~aL~n 512 (729)
..+..|-++|. ++++.++..|+..|..+..... . .++..|...|.+++ +.++..|+..|+.
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~---~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG---R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT---H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc---H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 45667777776 6678889999999998877542 1 25778888887655 5677788888876
Q ss_pred hhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhc-CCCHHHHHHHHHH
Q 004806 513 LSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLG-NGTPRGKKDAATA 591 (729)
Q Consensus 513 Ls~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~-~~~~~v~~~Al~a 591 (729)
......+. .+++.|..+|.+.+..+++.|+-+|.-+-.... ...++..|+..+. ..+..+++.++.+
T Consensus 464 a~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg------n~~ai~~LL~~~~e~~~e~vrR~aalg 531 (963)
T 4ady_A 464 AAMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG------KPEAIHDMFTYSQETQHGNITRGLAVG 531 (963)
T ss_dssp HSTTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HhcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC------CHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 64433222 346778888887777677777766665422111 1235667776654 4577889999988
Q ss_pred HHhcccCcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHc-cCCHHHHHH
Q 004806 592 LFNLSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKEN 668 (729)
Q Consensus 592 L~nLs~~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~ 668 (729)
|..+.... ...++.+++.| +.++-++..++.+++.-....... .+|+.|++.+. ..++.++..
T Consensus 532 LGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRra 597 (963)
T 4ady_A 532 LALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRA 597 (963)
T ss_dssp HHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHH
T ss_pred HHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHH
Confidence 88765422 23566777777 345555555566665444332222 23566666664 467889999
Q ss_pred HHHHHHHHhhCCHhhHHHHHhCCCHHHHHH-hhhCCCHHHHHHHHHHHHHhhc
Q 004806 669 AAAALLQLCTNSSRFCSMVLQEGAVPPLVA-LSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 669 A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~-Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
|+.+|..++...++ .++.++. +++++++.+|..|..+|.++..
T Consensus 598 AViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 598 AVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp HHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 99999988877653 4566665 4567789999999998888754
|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.003 Score=52.32 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=37.9
Q ss_pred ccccCccccccCceec-CCCccccHHHHHHHHhcC-CCCCCCCCccCCC
Q 004806 141 FCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLG-LFVCPKTRQTLAH 187 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~ 187 (729)
-.|+||.+++..=+.- .|||.|=..||.+||+.. ..+||.|++++..
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 5699999988743332 699999999999999864 3679999988754
|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0031 Score=50.03 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=40.2
Q ss_pred CcccccCccccccCceecCCCc-----cccHHHHHHHHhc-CCCCCCCCCccCCC
Q 004806 139 SDFCCPLSLELMTDPVIVASGQ-----TYERAFIKKWIDL-GLFVCPKTRQTLAH 187 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~-----ty~r~~I~~~~~~-~~~~cP~t~~~l~~ 187 (729)
+.-.|.||++-..+|++.||.. -|=+.||.+|+.. ++.+||+|+.++..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3456999998888999899653 7999999999975 55789999998753
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.23 Score=60.07 Aligned_cols=217 Identities=16% Similarity=0.135 Sum_probs=145.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS-ETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~-d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
.++.++..+.+-...++..|..++..+.+.-+.+.. ...+|.|+..|.+. ....+..|+.+|..|+... ...+
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~ 169 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQV 169 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHH
Confidence 467777777777788888888788777664332222 34688888888755 5899999999999997543 2333
Q ss_pred Hh--cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHH
Q 004806 524 AN--ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN 601 (729)
Q Consensus 524 ~~--~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en 601 (729)
.. ...||.+...+-+..++++..|..++..++..-.|+.. ...||.|++.+.++.. .-.++..|..-+.-.+
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~- 243 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAE- 243 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSC-
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEee-
Confidence 32 36778888888888899999999999998875445442 2678999999988753 3334444444332222
Q ss_pred HHHHHHcC----cHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHH--HhCCcHHHHHHHHcc-CCHHHHHHHHHHH
Q 004806 602 KARIVQAG----AVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAI--GQENGIPVLVEVVEL-GSARGKENAAAAL 673 (729)
Q Consensus 602 ~~~lv~~G----~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i--~~~g~I~~Lv~lL~s-~s~~~ke~A~~aL 673 (729)
|++- .+|.|..-| +....+..+++-++.|||.--+....+ .-...+|.|-+.... .+|++++.|..++
T Consensus 244 ----v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~ 319 (986)
T 2iw3_A 244 ----VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRAL 319 (986)
T ss_dssp ----CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred ----ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHH
Confidence 1122 344455545 456778899999999999932222222 234456666666654 6799998888888
Q ss_pred HHHh
Q 004806 674 LQLC 677 (729)
Q Consensus 674 ~nL~ 677 (729)
-.|-
T Consensus 320 ~~l~ 323 (986)
T 2iw3_A 320 KTLR 323 (986)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0039 Score=54.01 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=38.1
Q ss_pred cccCccccccCce-ecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 142 CCPLSLELMTDPV-IVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 142 ~CpI~~~lm~dPV-~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
.|++|.-.+..=. ++||+|.||-.|+..|..++..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888876555433 579999999999999999888899999998754
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.02 Score=64.19 Aligned_cols=238 Identities=12% Similarity=0.072 Sum_probs=154.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CcHHHHHHHHc--C-----C---CHHHHHHHHHHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC--GAINILVDMLH--S-----S---ETKIQENAVTALLN 512 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~--GaI~~Lv~LL~--s-----~---d~~v~e~Al~aL~n 512 (729)
....|+..|-+..++++-.|+-.||.+.+.....-...... +..-.|+-+|. . . -.-|+|.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 56788888999999999999999998877543210000111 22333333331 1 1 24589999999988
Q ss_pred hhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh-ccCcHHHHHHhhcCCCHHHHHHHHHH
Q 004806 513 LSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG-RSGAIGPLVDLLGNGTPRGKKDAATA 591 (729)
Q Consensus 513 Ls~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~-~~g~I~~Lv~LL~~~~~~v~~~Al~a 591 (729)
+ .+-... ..++..|+..+.....+++--++-.|.++ +..+. -.++++.++..|.+.+.+++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 642221 45566666666778899999999999998 22222 14778888888999999999999999
Q ss_pred HHhcccCcHHHHHHHHcCcHHHHHHhc-------CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHH
Q 004806 592 LFNLSIYHENKARIVQAGAVKHLVDLM-------DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSAR 664 (729)
Q Consensus 592 L~nLs~~~en~~~lv~~G~V~~Lv~LL-------~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~ 664 (729)
|.-++ .+ ..++.++.++ ++=..-+-..+.+|+.|+..+.. +-.....+|.|.-++++.-..
T Consensus 323 LiPIA-~p---------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 323 LCHFP-IT---------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp HTTSC-CS---------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHH
T ss_pred hhhhc-ch---------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHH
Confidence 99998 22 2344444433 21122244567778888775531 111235688899999999999
Q ss_pred HHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHH
Q 004806 665 GKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716 (729)
Q Consensus 665 ~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~ 716 (729)
++..++.+|..+. ....-.. ....++-..++.+++.+..+.+
T Consensus 391 VR~AVL~TL~tfL--~~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 391 VRTSILNMVKNLS--EESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHTTTCC--CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999987776 2221111 1223455667788887777665
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.13 Score=52.77 Aligned_cols=184 Identities=15% Similarity=0.202 Sum_probs=118.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChhhH--H-HHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--C-c-cH
Q 004806 449 LVEDLKSTSLDTQREATAELRLLAKHNMDNR--M-VIANC-GAINILVDMLHSSETKIQENAVTALLNLSIN--D-N-NK 520 (729)
Q Consensus 449 Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr--~-~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~--~-~-~k 520 (729)
|-+.|.+.++..|.+|+..|..+........ . .+... ..++.+-..+.+.+..++..++.+|..+... . . .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4577889999999999999988766432211 1 11112 3455667788888999999999999887642 1 1 11
Q ss_pred H--HHHhcCCHHHHHHH-hcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc
Q 004806 521 S--AIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI 597 (729)
Q Consensus 521 ~--~I~~~g~I~~Lv~l-L~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~ 597 (729)
. ...-...++.|+.- |.+....++..|..+|..+....... ..++..++..+.+.++.++..++.+|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1 12233567777764 77778889988888887765322111 1235667777888899999999998887643
Q ss_pred Cc--HH-HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 598 YH--EN-KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 598 ~~--en-~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
.. .. .....-..+++.+..+| +.+..+++.|..++..|-.
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 11 00 00111112344556666 5788999999998888765
|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0013 Score=69.55 Aligned_cols=47 Identities=15% Similarity=0.406 Sum_probs=38.2
Q ss_pred ccccCccccccC----cee----cCCCccccHHHHHHHHhcCC----------CCCCCCCccCCC
Q 004806 141 FCCPLSLELMTD----PVI----VASGQTYERAFIKKWIDLGL----------FVCPKTRQTLAH 187 (729)
Q Consensus 141 f~CpI~~~lm~d----PV~----~~~G~ty~r~~I~~~~~~~~----------~~cP~t~~~l~~ 187 (729)
--|+||+..+.+ |-. ..|||.|-..||.+|++..+ .+||.|+++++.
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 469999999988 543 36999999999999998521 359999998764
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.44 Score=48.49 Aligned_cols=226 Identities=19% Similarity=0.194 Sum_probs=148.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHH-HhcCcHHHHHHHH-------cCC-----CHHHHHHHHHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVI-ANCGAINILVDML-------HSS-----ETKIQENAVTALL 511 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I-~~~GaI~~Lv~LL-------~s~-----d~~v~e~Al~aL~ 511 (729)
.+..++..|..+ +.+..|+.+|..=-..-++---.+ ...|.+..|+.=+ ..+ ...-..+|+..|-
T Consensus 4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 455566666543 457777666654222111111122 2348888776522 111 1223356666666
Q ss_pred HhhcCCccHHHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhccCcc--hhhhhhccCcHHHHHHhhcCCCHHH
Q 004806 512 NLSINDNNKSAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIED--NKIKIGRSGAIGPLVDLLGNGTPRG 584 (729)
Q Consensus 512 nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~-----~e~r~~Aa~aL~nLS~~~e--~k~~I~~~g~I~~Lv~LL~~~~~~v 584 (729)
-++.+++.|..+..+...--|..+|+..+ .-+|..+++++..|...++ .-..+...+.||.++..+..|+.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 67889999999999987666777776544 4589999999999987543 3444566799999999999999999
Q ss_pred HHHHHHHHHhcccCcHHHHHHHH--------cCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHh-------
Q 004806 585 KKDAATALFNLSIYHENKARIVQ--------AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQ------- 647 (729)
Q Consensus 585 ~~~Al~aL~nLs~~~en~~~lv~--------~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~------- 647 (729)
+..|..++..+-.++.+-..+.. ..++..++.-+ +++..+....+.+-..|+.++.+|+++..
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 99999999998877766554433 22333344433 47788999999999999999999988864
Q ss_pred CCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 004806 648 ENGIPVLVEVVELGSARGKENAAAALLQL 676 (729)
Q Consensus 648 ~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL 676 (729)
.|... .++ .+++..+..-...+.|+
T Consensus 242 d~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred ChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 22222 222 35666666655555543
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.04 Score=66.92 Aligned_cols=251 Identities=13% Similarity=0.120 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc------CCCHHHHHHHHHHHHHhhcCCccHHHHHhc-----C
Q 004806 459 DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH------SSETKIQENAVTALLNLSINDNNKSAIANA-----N 527 (729)
Q Consensus 459 evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~------s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~-----g 527 (729)
..+..|...|..|+..-+ ..+. .-.++.+...|. +.+...++.|+.++..++..-.....-... .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 356677778888877532 1111 112334444454 567788999999999997431100000000 1
Q ss_pred CHH----HHHHHhcCC---CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcH
Q 004806 528 AIE----PLIHVLQTG---SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 528 ~I~----~Lv~lL~s~---~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e 600 (729)
..+ .++..|.+. ++-+|..|+++|..++..- .... -..+++.++..|.+.+..++..|+.||.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 112 233345555 7889999999999987632 1111 23567888888888889999999999999886321
Q ss_pred ---------HHHHHHH--cCcHHHHHHhcCCC----HH--HHHHHHHHHHHHhCCc-chHHHHHhCCcHHHHHHHHc---
Q 004806 601 ---------NKARIVQ--AGAVKHLVDLMDPA----AG--MVDKAVAVLANLATIP-DGRVAIGQENGIPVLVEVVE--- 659 (729)
Q Consensus 601 ---------n~~~lv~--~G~V~~Lv~LL~~~----~~--v~e~Al~~L~nLa~~~-e~r~~i~~~g~I~~Lv~lL~--- 659 (729)
.+..+.. ..+++.|+.+++.. .. ..+.++.+|..++..- +.-.... ...++.|+..+.
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~ 607 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMA 607 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHT
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHH
Confidence 1222211 33555566666321 11 2244555555544311 1100000 113444444443
Q ss_pred -c-CCHHHHHHHHHHHHHHhhC-CHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 660 -L-GSARGKENAAAALLQLCTN-SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 660 -s-~s~~~ke~A~~aL~nL~~~-~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
+ .++.....++.+|..++.. .++....+ ....+|.+..+++.........+..++..+
T Consensus 608 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 608 KNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 2 3566677788888888876 33333333 334678888888876544555555554443
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.47 Score=49.84 Aligned_cols=136 Identities=11% Similarity=0.122 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHhcccCcHHHHHHHHc--CcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc---chHHHHHhCCcHHHH
Q 004806 581 TPRGKKDAATALFNLSIYHENKARIVQA--GAVKHLVDLM-DPAAGMVDKAVAVLANLATIP---DGRVAIGQENGIPVL 654 (729)
Q Consensus 581 ~~~v~~~Al~aL~nLs~~~en~~~lv~~--G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~---e~r~~i~~~g~I~~L 654 (729)
.+..+..++++++|+-..+..+..+... .++..+...+ ..+..++..+..++.|++... ...+.. ...+..+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l 238 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLI 238 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHH
Confidence 5667889999999999988888877652 3444444444 356777788888888987621 011110 1134445
Q ss_pred HHHHcc-CCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhC-CCHHHHHHHHHHHHHh
Q 004806 655 VEVVEL-GSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-GTPRAKEKAQALLSYF 718 (729)
Q Consensus 655 v~lL~s-~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~s-g~~rvr~~A~~lL~~L 718 (729)
..++.. .+.+....++.+|.+|...+++..+.....|+-..+-.+... ..+++.+.|..+|..|
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 555543 588999999999999998877655555556666666666655 3589999999888654
|
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.016 Score=62.02 Aligned_cols=62 Identities=16% Similarity=0.271 Sum_probs=52.7
Q ss_pred cccccCccccccCcee-cCCCcc--ccHHHHHHHHhcC-CCCCCCCCccCCCCCCcccHHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVI-VASGQT--YERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 201 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~-~~~G~t--y~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN~~l~~~I~ 201 (729)
.+.|||++..|+.||. ..|.|. ||...+....... .-.||+|++.+...+|+.+.-+.+.++
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 5899999999999998 579997 9999888876543 446999999999999999988877654
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.29 Score=51.38 Aligned_cols=184 Identities=14% Similarity=0.119 Sum_probs=109.2
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHH----HHHHHhcC-CCHHHHHHHHHHHHHhccCcchh
Q 004806 487 AINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIE----PLIHVLQT-GSPEARENAAATLFSLSVIEDNK 561 (729)
Q Consensus 487 aI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~----~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~e~k 561 (729)
.+..|..++ ....+.+--++-+|.-+..++.....+.+.+.-. .++..+.. +.+..+..++++++|+-.....+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 345666665 3344444455555555555544444443332222 23334432 34667889999999998888887
Q ss_pred hhhhcc--CcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHH-HHHHHHcCcHHHHHHhcC--CCHHHHHHHHHHHHHHh
Q 004806 562 IKIGRS--GAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN-KARIVQAGAVKHLVDLMD--PAAGMVDKAVAVLANLA 636 (729)
Q Consensus 562 ~~I~~~--g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en-~~~lv~~G~V~~Lv~LL~--~~~~v~e~Al~~L~nLa 636 (729)
..+... .+++.+...+...+..++..++.+++|++..... +..=....++..+..++. .+.+.+-.++.+|++|.
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 776643 4556666666667889999999999999873110 000001114445555553 57788889999999999
Q ss_pred CCcchHHHHHhCCcHHHHHHHHcc--CCHHHHHHHHH
Q 004806 637 TIPDGRVAIGQENGIPVLVEVVEL--GSARGKENAAA 671 (729)
Q Consensus 637 ~~~e~r~~i~~~g~I~~Lv~lL~s--~s~~~ke~A~~ 671 (729)
........+++.-++...+.-+.+ ..+++.+.|-.
T Consensus 263 ~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~ 299 (304)
T 3ebb_A 263 SDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRF 299 (304)
T ss_dssp TTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHH
T ss_pred hCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHH
Confidence 865555555554445544444433 34555554433
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.51 Score=47.98 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=124.5
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcC--CccHHHHHhcCCHHHHHH
Q 004806 462 REATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSE-----TKIQENAVTALLNLSIN--DNNKSAIANANAIEPLIH 534 (729)
Q Consensus 462 ~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d-----~~v~e~Al~aL~nLs~~--~~~k~~I~~~g~I~~Lv~ 534 (729)
.+|+..|.-+|. +++.|..+.++...-.|-.+|+..+ +.++-.++.+++.|... ++.-..+.+.+.+|..++
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 467777788887 5689999999999999999997542 55788889999998754 334555677899999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCcchhhhhhcc--------CcHHHHHH-hhcCCCHHHHHHHHHHHHhcccCcHHHHHH
Q 004806 535 VLQTGSPEARENAAATLFSLSVIEDNKIKIGRS--------GAIGPLVD-LLGNGTPRGKKDAATALFNLSIYHENKARI 605 (729)
Q Consensus 535 lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~--------g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~~~en~~~l 605 (729)
.+..|+.-.|.-|+.++..+-.++..-..+... .++..+|. +.+.+++++.++.+++-..|+.++..+..+
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL 232 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL 232 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999888887766655544432 23444443 445679999999999999999999988877
Q ss_pred HH-------cCcHHHHHHhcCCCHHHHHHHHHHHHHH
Q 004806 606 VQ-------AGAVKHLVDLMDPAAGMVDKAVAVLANL 635 (729)
Q Consensus 606 v~-------~G~V~~Lv~LL~~~~~v~e~Al~~L~nL 635 (729)
.. .|.+. .+++.+..+...-...+.|+
T Consensus 233 ~~~LP~~Lrd~tf~---~~l~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 233 RQCLPDQLKDTTFA---QVLKDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHSCGGGTSSTTH---HHHTSCHHHHHHHHHHHHHS
T ss_pred HHhCcHHhhChHHH---HHHhcCHHHHHHHHHHHHhc
Confidence 64 12222 23345555555555555554
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.55 Score=47.99 Aligned_cols=185 Identities=12% Similarity=0.053 Sum_probs=118.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCcc---hhhhhhc--cCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc------H
Q 004806 532 LIHVLQTGSPEARENAAATLFSLSVIED---NKIKIGR--SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH------E 600 (729)
Q Consensus 532 Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e---~k~~I~~--~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~------e 600 (729)
|-.-|.+.+...|..|+..|..+..... ....... ...++.+-..+.+.+..+...++.+|..++..- .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5577888899999999988876643211 1111111 234556667888899999999999888776421 1
Q ss_pred HHHHHHHcCcHHHHHHh-c-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhh
Q 004806 601 NKARIVQAGAVKHLVDL-M-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~L-L-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
......-..+++.|++- | +....+++.++.+|..++........ .+..++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 12222335567777763 5 56778888888888777643221111 24555666778899999999999887654
Q ss_pred CCH-hh--HHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCc
Q 004806 679 NSS-RF--CSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQR 722 (729)
Q Consensus 679 ~~~-~~--~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~ 722 (729)
..+ .. ....+. .+++.|..++.+.++.||..|..++.-+.++-
T Consensus 169 ~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 169 AFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 321 10 111111 24556777888899999999999887776653
|
| >2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.017 Score=50.31 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=29.7
Q ss_pred CcccccCccc-cccCcee--cCCCccccHHHHHHHHh
Q 004806 139 SDFCCPLSLE-LMTDPVI--VASGQTYERAFIKKWID 172 (729)
Q Consensus 139 ~~f~CpI~~~-lm~dPV~--~~~G~ty~r~~I~~~~~ 172 (729)
+++.|+||.+ .+.+||. +.|||+||+.|++.++.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 5688999996 4899999 99999999999999544
|
| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B | Back alignment and structure |
|---|
Probab=93.93 E-value=0.042 Score=58.64 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=54.0
Q ss_pred CCcccccCccccccCcee-cCCCcc--ccHHHHHHHHhcC-CCCCCCCCccCCCCCCcccHHHHHHHH
Q 004806 138 PSDFCCPLSLELMTDPVI-VASGQT--YERAFIKKWIDLG-LFVCPKTRQTLAHTTLIPNYTVKALIA 201 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~-~~~G~t--y~r~~I~~~~~~~-~~~cP~t~~~l~~~~l~pN~~l~~~I~ 201 (729)
.=.+.|||++..|+.||. ..|.|. ||...+....... .-.||+|++.+..++|+.+.-+.+.+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 346899999999999998 579988 9999988887654 346999999999999999988777765
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.97 Score=46.43 Aligned_cols=178 Identities=12% Similarity=0.108 Sum_probs=114.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCc-HHHHHHHHcCCCHHHHHHHHHHHHHhhc---CCccHHHH
Q 004806 448 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGA-INILVDMLHSSETKIQENAVTALLNLSI---NDNNKSAI 523 (729)
Q Consensus 448 ~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~Ga-I~~Lv~LL~s~d~~v~e~Al~aL~nLs~---~~~~k~~I 523 (729)
.+...|-+.+...+..|+..|......++ ...+...+. ++.+.--+.+.+..+...++.+|..+.. ....+-.-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 44555556677778888888887655433 233332232 2222223346788888888888777631 11111111
Q ss_pred Hh-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 524 AN-ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 524 ~~-~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
.+ .-.+|.|+.-|-.....+|..+-.+|..|... .--..+++.+++-+++.+.+.+..++..|..+-......
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 12 23688999999887788998888877766431 111246777888888999999999999888874422111
Q ss_pred HHHHHcCcH---HHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 004806 603 ARIVQAGAV---KHLVDLM-DPAAGMVDKAVAVLANLAT 637 (729)
Q Consensus 603 ~~lv~~G~V---~~Lv~LL-~~~~~v~e~Al~~L~nLa~ 637 (729)
...++ +.+..++ +.+..+++.|+.++..+-.
T Consensus 202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred ----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 23467 8888888 6888999999888875543
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=1.3 Score=46.76 Aligned_cols=196 Identities=14% Similarity=0.139 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHH----HHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMV----IAN-CGAINILVDMLHSSETKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~----I~~-~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~ 517 (729)
.+.+..|+..|..=+-+.+..+......+.+.....+.. +.. ...+..|+.-- +++++.-.+-..|.....++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhH
Confidence 457778888888778888888888888887765544322 222 12333333333 35556667777777777777
Q ss_pred ccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhcc---CcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 518 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRS---GAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~---g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
.....+...+.+..+...+..++-++-..|..++..|-.. .......... ..+...-.||.+++--.++.++..|.
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 7777788888888999999999999999999988877442 2222222221 56777888999999999999999999
Q ss_pred hcccCcHHHHHHHH----cCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcc
Q 004806 594 NLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD 640 (729)
Q Consensus 594 nLs~~~en~~~lv~----~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e 640 (729)
.|-.+..|...+.. ..-+..++.+| +....+.-.|..++.....++.
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 99998888776655 44677788888 5778888999999988776553
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=92.94 E-value=3.7 Score=49.52 Aligned_cols=217 Identities=10% Similarity=0.080 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHH----hcCcHHH----HHHHHcCC---CHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 455 STSLDTQREATAELRLLAKHNMDNRMVIA----NCGAINI----LVDMLHSS---ETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 455 s~~~evq~~Al~~L~~La~~s~~nr~~I~----~~GaI~~----Lv~LL~s~---d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
+.+...+..|+..+..++........... .....+. ++..|.+. .+.++..|+++|..++..- .+..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~- 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ- 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence 44556677788888888753110000000 0023333 34445666 8999999999999987532 1221
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc---------hhhhhhc--cCcHHHHHHhhcCCC---HH--HHHH
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED---------NKIKIGR--SGAIGPLVDLLGNGT---PR--GKKD 587 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e---------~k~~I~~--~g~I~~Lv~LL~~~~---~~--v~~~ 587 (729)
-...++.++..|.+.+..++.+|+.+|.+++...+ .+..+.. ...+..|+.++.... .. ....
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 23467788888888889999999999999887422 2333332 256667777777641 11 2234
Q ss_pred HHHHHHhccc--CcHHHHHHHHcCcHHHHHHhc----C--CCHHHHHHHHHHHHHHhCC--cchHHHHHhCCcHHHHHHH
Q 004806 588 AATALFNLSI--YHENKARIVQAGAVKHLVDLM----D--PAAGMVDKAVAVLANLATI--PDGRVAIGQENGIPVLVEV 657 (729)
Q Consensus 588 Al~aL~nLs~--~~en~~~lv~~G~V~~Lv~LL----~--~~~~v~e~Al~~L~nLa~~--~e~r~~i~~~g~I~~Lv~l 657 (729)
++.+|..+.. ..+... .+ ..+++.|+..+ + .+......++.+|..++.. ++... -.....++.+..+
T Consensus 573 l~~al~~vv~~~~~~~~p-~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~i 649 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQP-LF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHTTTTGG-GH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHH
Confidence 4445554432 111111 00 11334444443 2 3445556677777777664 22222 2334467888888
Q ss_pred HccCCHHHHHHHHHHHHHHh
Q 004806 658 VELGSARGKENAAAALLQLC 677 (729)
Q Consensus 658 L~s~s~~~ke~A~~aL~nL~ 677 (729)
|........+.+..++..+.
T Consensus 650 L~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHH
T ss_pred HHhhhHhhHHHHHHHHHHHH
Confidence 87655555566666665554
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=92.94 E-value=0.054 Score=55.19 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=29.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHH
Q 004806 652 PVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715 (729)
Q Consensus 652 ~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL 715 (729)
+.|..++...+..++..++..| +.+.|..| ++.+..|++.|..-|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l------------------~~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHA------------------SLEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHS------------------CHHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHc-cCCCHHHHHHHHHHh
Confidence 4566666666777776666653 14566666 777889998887544
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.29 E-value=4.5 Score=48.68 Aligned_cols=209 Identities=13% Similarity=0.056 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHh---c--CCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHH
Q 004806 498 SETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL---Q--TGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIG 571 (729)
Q Consensus 498 ~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL---~--s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~ 571 (729)
.+...++.|+.+|..++....... ...++.++.++ . ..++.++..++++|..++.. ..+...+ ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 567788999999999875422111 13344444433 3 24788999999999988752 2211111 24566
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH--cCcHHHHHHhcC---CCHHHHHHHHHHHHHHhCC--cchHHH
Q 004806 572 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ--AGAVKHLVDLMD---PAAGMVDKAVAVLANLATI--PDGRVA 644 (729)
Q Consensus 572 ~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~--~G~V~~Lv~LL~---~~~~v~e~Al~~L~nLa~~--~e~r~~ 644 (729)
.|+..|. +.++..|+.+|.+|+.. .+..+.. ...+..|..++. .+......++.+++.++.. .+....
T Consensus 550 ~l~~~l~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGLN---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHHH---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHhC---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6776662 67899999999999852 2233322 345555666663 2456677777777777653 133322
Q ss_pred HHhCCcHHHHHH----HHccC--CHHHHHHHHHHHHHHhhCCH----------------hhHHHHHhCCCHHHHHHhhhC
Q 004806 645 IGQENGIPVLVE----VVELG--SARGKENAAAALLQLCTNSS----------------RFCSMVLQEGAVPPLVALSQS 702 (729)
Q Consensus 645 i~~~g~I~~Lv~----lL~s~--s~~~ke~A~~aL~nL~~~~~----------------~~~~~vl~~G~v~~Lv~Ll~s 702 (729)
... ..++.++. ++... ++..+...+.+|..|+..-. .....+ ...+++.+..++..
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHh
Confidence 222 12333333 33332 34344445555544442110 000111 23467777777754
Q ss_pred --CCHHHHHHHHHHHHHhh
Q 004806 703 --GTPRAKEKAQALLSYFR 719 (729)
Q Consensus 703 --g~~rvr~~A~~lL~~L~ 719 (729)
.++.+.+.|.++++.+.
T Consensus 703 ~~~~~~v~e~~~~~~~~~~ 721 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAI 721 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 35788888888887643
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=92.06 E-value=4.2 Score=43.92 Aligned_cols=154 Identities=16% Similarity=0.228 Sum_probs=101.1
Q ss_pred HHHHHHHHhhcc-ChhhHHHHHhcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCccHHHHHhc-CCH
Q 004806 463 EATAELRLLAKH-NMDNRMVIANCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDNNKSAIANA-NAI 529 (729)
Q Consensus 463 ~Al~~L~~La~~-s~~nr~~I~~~GaI~~Lv~LL~s-----------~d~~v~e~Al~aL~nLs~~~~~k~~I~~~-g~I 529 (729)
..+..|+.--+. ...--..+. .+|+..|+.+|.. .+...+..++.+|..+..+..+...+... .+|
T Consensus 86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence 345555532232 223333444 6788999888841 24578888999999987776666666654 789
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccCcc--h-hhhh----------hccCcHHHHHHhhcCC-CHHHHHHHHHHHHhc
Q 004806 530 EPLIHVLQTGSPEARENAAATLFSLSVIED--N-KIKI----------GRSGAIGPLVDLLGNG-TPRGKKDAATALFNL 595 (729)
Q Consensus 530 ~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e--~-k~~I----------~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nL 595 (729)
..|+..|.+..+.++..|+.+|..+|.... + ...+ .+..-+..++..|+.. +.+.+..++..+-.|
T Consensus 165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l 244 (383)
T 3eg5_B 165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 244 (383)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 999999999999999999999998887553 2 2222 2235578889988874 666666655555555
Q ss_pred ccCc---HH----HHHHHHcCcHHHHHHh
Q 004806 596 SIYH---EN----KARIVQAGAVKHLVDL 617 (729)
Q Consensus 596 s~~~---en----~~~lv~~G~V~~Lv~L 617 (729)
.... +. +..+...|..+.+-.+
T Consensus 245 i~~~~dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 245 ITPAEELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 4432 22 3345567877777664
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=90.95 E-value=8.7 Score=45.96 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=84.9
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHh---cCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHH
Q 004806 496 HSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVL---QTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIG 571 (729)
Q Consensus 496 ~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL---~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~ 571 (729)
.+.+...++.++.+|..++..-... ....++.++.+| ..+++.++..++++|..++.. ..+...+ ..+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHH
Confidence 4567888999999999997542110 123344555544 335688999999999988753 2222211 37888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHH--cCcHHHHHHhcC---CCHHHHHHHHHHHHHHhCC
Q 004806 572 PLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQ--AGAVKHLVDLMD---PAAGMVDKAVAVLANLATI 638 (729)
Q Consensus 572 ~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~--~G~V~~Lv~LL~---~~~~v~e~Al~~L~nLa~~ 638 (729)
.|+..|.+ +.++..|+.+|.+++.. .+..+.. ...+..|..++. .+...+..++.+++.++..
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 88888865 78999999999999852 1111211 223444445552 2456777788888888763
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.56 Score=52.76 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 524 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~ 524 (729)
.+..|++.+....++++..++-.|+.+ .+- ... -.++++.++.-|.+.|.+|+..|+.+|.-++ .+....
T Consensus 264 IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DL--L~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~--- 333 (800)
T 3oc3_A 264 IIEQLVGFLDSGDWQVQFSGLIALGYL-KEF--VED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLD--- 333 (800)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHT-GGG--CCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHH---
T ss_pred HHHHHHhhcCCCCeeehhhhHHHHHHH-HHH--HHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhhHH---
Confidence 455555566778899999999888888 211 111 1367888888999999999999999998777 222111
Q ss_pred hcCCHHHHHHHhcCCC--HHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 525 NANAIEPLIHVLQTGS--PEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s~~--~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
..+..+...|.+.+ .......+..|..|...+.. .-.....+|.|..+|++..+.++..++.+|..+.
T Consensus 334 --~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL------ 403 (800)
T 3oc3_A 334 --LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS------ 403 (800)
T ss_dssp --HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC------
T ss_pred --HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH------
Confidence 22344444554322 12233344555555543321 1122488999999999999999999999999987
Q ss_pred HHHHHcCcHHHHHH--hcCCCHHHHHHHHHHHH
Q 004806 603 ARIVQAGAVKHLVD--LMDPAAGMVDKAVAVLA 633 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~--LL~~~~~v~e~Al~~L~ 633 (729)
...++..+.+ +++++.++++.+..++.
T Consensus 404 ----~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 ----EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp ----CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ----hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1123333333 23788899998888885
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=90.24 E-value=14 Score=39.07 Aligned_cols=197 Identities=14% Similarity=0.079 Sum_probs=141.2
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccH----HHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 004806 482 IANCGAINILVDMLHSSETKIQENAVTALLNLSIND-NNK----SAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLS 555 (729)
Q Consensus 482 I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~-~~k----~~I~~~-g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS 555 (729)
+...+.+..|+..|..=+.+.+..+..+..++.... ..+ ..+... ..+..|+.--. ++++-.++-..|....
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHH
Confidence 345588999999998889999999999998886542 222 122221 22222322222 3555566667777777
Q ss_pred cCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcC---cHHHHHHhcCC-CHHHHHHHHH
Q 004806 556 VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAG---AVKHLVDLMDP-AAGMVDKAVA 630 (729)
Q Consensus 556 ~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G---~V~~Lv~LL~~-~~~v~e~Al~ 630 (729)
.++.....|...+.+-.+.+++..++=++..+|..++..|-. +......++... .+...-.||.+ +--++..++.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 777777777777888899999999999999999999988755 444455555533 45566667754 4455688999
Q ss_pred HHHHHhCCcchHHHHHh----CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 631 VLANLATIPDGRVAIGQ----ENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 631 ~L~nLa~~~e~r~~i~~----~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
+|+.|-....+...+.. ..-+..++.+|++.+..++..|.-+.--..++.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 99999988777666643 234889999999999999999999987777764
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=89.93 E-value=6 Score=39.46 Aligned_cols=134 Identities=17% Similarity=0.255 Sum_probs=86.8
Q ss_pred hcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCccHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHH
Q 004806 484 NCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATL 551 (729)
Q Consensus 484 ~~GaI~~Lv~LL~s-----------~d~~v~e~Al~aL~nLs~~~~~k~~I~~-~g~I~~Lv~lL~s~~~e~r~~Aa~aL 551 (729)
..||+..|+.+|.. .+...+..++.+|..+..+..+...+.. .+++..|+..|.+..+.++..++.+|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 35788888887742 1456788889999888766666666655 47899999999999999999999999
Q ss_pred HHhccCcc--h-hhhh----------hccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCc---HH----HHHHHHcCc
Q 004806 552 FSLSVIED--N-KIKI----------GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYH---EN----KARIVQAGA 610 (729)
Q Consensus 552 ~nLS~~~e--~-k~~I----------~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~---en----~~~lv~~G~ 610 (729)
..++...+ + ...+ .+..-+..+++.|+.. +.+.+..++..+-.|.... +. |..+...|.
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 88887543 3 2222 1224566777777743 4555555554444444322 22 233445666
Q ss_pred HHHHHHh
Q 004806 611 VKHLVDL 617 (729)
Q Consensus 611 V~~Lv~L 617 (729)
.+.+-.+
T Consensus 201 ~~il~~l 207 (233)
T 2f31_A 201 HQVLQEL 207 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555444
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=89.86 E-value=6.8 Score=43.33 Aligned_cols=129 Identities=19% Similarity=0.234 Sum_probs=90.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHh
Q 004806 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN 525 (729)
Q Consensus 446 V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~ 525 (729)
-..++... .++...++-|+..|..+.++-++.... +|..++.|..++|..++.+|+..|-.+|.+ ++-..
T Consensus 31 y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k--- 100 (507)
T 3u0r_A 31 YQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR--- 100 (507)
T ss_dssp HHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH---
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh---
Confidence 34444443 456788889999999999987765443 688999999999999999999999999987 44333
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 526 ANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 526 ~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
....|+++|.+.+..-...+-.+|..|-..+ -.+.+..|..-+..++..++..++..|.
T Consensus 101 --iaDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 101 --VADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp --HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 3677899999887554444444444432110 1255666666555667778887777664
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=89.74 E-value=10 Score=45.45 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=87.0
Q ss_pred cCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhh---cCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHH
Q 004806 537 QTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL---GNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKH 613 (729)
Q Consensus 537 ~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL---~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~ 613 (729)
...+...++.++.+|..++..-... ....++.++..+ ..+++.++..++++|..++..-...... -..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-INSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-HTTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHH
Confidence 4456788899999999988632110 123344454443 2357889999999999987632111122 2468888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHh--CCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhCC
Q 004806 614 LVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVEL--GSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 614 Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~--~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL~~~~ 680 (729)
|+..|.. ..+...|+.+|.+++. +.+..+.. ...+..|..++.. .+...++.+..++..++...
T Consensus 534 l~~~l~~-~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 534 VLHALGN-PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHTTC-GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCC-chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 8888854 6788999999999985 22222211 1234455555654 35788888899998887644
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=89.46 E-value=7.1 Score=46.96 Aligned_cols=131 Identities=14% Similarity=0.056 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhh---c--CCCHHHHHHHHHHHHhcccC-cHHHHHHHHcCcHH
Q 004806 539 GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLL---G--NGTPRGKKDAATALFNLSIY-HENKARIVQAGAVK 612 (729)
Q Consensus 539 ~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL---~--~~~~~v~~~Al~aL~nLs~~-~en~~~lv~~G~V~ 612 (729)
.+...++.++.+|..++..-.... ...++.++.++ . +.++.++..++++|..++.. ..+.. .. ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHHH
Confidence 456688888888998876322111 12334444333 3 34789999999999998752 11111 11 22455
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCCcchHHHHHh--CCcHHHHHHHHcc--CCHHHHHHHHHHHHHHhhC
Q 004806 613 HLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQ--ENGIPVLVEVVEL--GSARGKENAAAALLQLCTN 679 (729)
Q Consensus 613 ~Lv~LL~~~~~v~e~Al~~L~nLa~~~e~r~~i~~--~g~I~~Lv~lL~s--~s~~~ke~A~~aL~nL~~~ 679 (729)
.|+..|+ ..+...|+.+|.+|+. +.+..+.. ...+..|..++.. .+...++.+..++..++..
T Consensus 550 ~l~~~l~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 550 LLVRGLN--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHH--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 5555553 5678899999999994 33344432 2346666677776 4678899999999888764
|
| >3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A | Back alignment and structure |
|---|
Probab=88.16 E-value=7.7 Score=36.93 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=21.1
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
..+..+.||+|+.+..+ .-+..||+|+.+-.
T Consensus 134 ~~~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 134 EIKKVYICPICGYTAVD--------------------EAPEYCPVCGAPKE 164 (170)
T ss_dssp CCSCEEECTTTCCEEES--------------------CCCSBCTTTCCBGG
T ss_pred CCCCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCHH
Confidence 44567889988776642 23457999997643
|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.57 E-value=0.56 Score=47.43 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=38.3
Q ss_pred ccccCccccccCceecC-CCccccHHHHHHHHhcC-CCCCCCCCccCCCC
Q 004806 141 FCCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLG-LFVCPKTRQTLAHT 188 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~~-~G~ty~r~~I~~~~~~~-~~~cP~t~~~l~~~ 188 (729)
..|.||.++..-=+.-+ ||+.|-+.|+.+|++.. ...||.|+.+.+..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 46999999877544433 89999999999999864 35799999987654
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=86.09 E-value=3.3 Score=42.48 Aligned_cols=133 Identities=9% Similarity=0.056 Sum_probs=92.0
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChh--hHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHh-cCC
Q 004806 453 LKSTSLDTQREATAELRLLAKHNMD--NRMVIAN-CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN-ANA 528 (729)
Q Consensus 453 L~s~~~evq~~Al~~L~~La~~s~~--nr~~I~~-~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~-~g~ 528 (729)
+.+.+..+...++..|..+...-.+ .+..-.+ .-++|.|+.-|.+....+++.+-.+|..+.. +.. ...
T Consensus 96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v 168 (266)
T 2of3_A 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKM 168 (266)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHH
Confidence 3467888888888887766431100 0000111 2468889998888888898888887766641 111 235
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcH---HHHHHhhcCCCHHHHHHHHHHHHhcc
Q 004806 529 IEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAI---GPLVDLLGNGTPRGKKDAATALFNLS 596 (729)
Q Consensus 529 I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I---~~Lv~LL~~~~~~v~~~Al~aL~nLs 596 (729)
++.++.-+++.+...|+.++..|.++-...... ...++ +.+..++.+.+..++..|+.++..+-
T Consensus 169 ~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 169 TPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 667788888999999999999888875422111 23568 99999999999999999999988653
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=84.85 E-value=21 Score=43.36 Aligned_cols=218 Identities=14% Similarity=0.075 Sum_probs=127.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhc------CC
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSI------ND 517 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~------~~ 517 (729)
.+..+++.+.+++.+.+.+|-..|..+-+. + ++...+..+|. +.+..++..|+.+|.|... .+
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN-P---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-T---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 455566656666677788888888877553 2 45555666664 4588899999999988742 22
Q ss_pred ccHHHHHhcCCHHHHHHHhcCC-----CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 004806 518 NNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 592 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~lL~s~-----~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL 592 (729)
+.+..| ....+..+...-..+ ...++...+.++..++..+-.. ...+.++.|+.+++ .+...+..++.+|
T Consensus 87 ~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 87 DHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMIVL 161 (1049)
T ss_dssp HHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 223333 222333333322111 2456666777777776532111 23578899999986 5555667777777
Q ss_pred HhcccC---------cHHH-----HHHHH--cCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHH
Q 004806 593 FNLSIY---------HENK-----ARIVQ--AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 654 (729)
Q Consensus 593 ~nLs~~---------~en~-----~~lv~--~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~L 654 (729)
..|+.. ...+ ..+.. ..++..+..++ ..+..++..++.++......-+. ..+.+...++.+
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l 240 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELL 240 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHH
Confidence 776631 1111 12222 11233333444 24567888888888887664332 224455666666
Q ss_pred HHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 655 VEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 655 v~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
.+.+. .++..+..|+.+|..+...
T Consensus 241 ~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 241 STKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 63332 3678888889988888765
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=84.16 E-value=12 Score=37.20 Aligned_cols=128 Identities=17% Similarity=0.176 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcc--h-HHHHHh---------
Q 004806 582 PRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPD--G-RVAIGQ--------- 647 (729)
Q Consensus 582 ~~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e--~-r~~i~~--------- 647 (729)
......++.||..|..+..+...++. .+++..|+..|+ +...++..++.+|..+|..++ | ...+.+
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 45677888899999888888888776 667888888785 567888899999999998654 6 554432
Q ss_pred -CCcHHHHHHHHccC-CHHHHHHHHHHHHHHhhCCH------hhHHHHHhCCCHHHHHHhhhCCCHHHHH
Q 004806 648 -ENGIPVLVEVVELG-SARGKENAAAALLQLCTNSS------RFCSMVLQEGAVPPLVALSQSGTPRAKE 709 (729)
Q Consensus 648 -~g~I~~Lv~lL~s~-s~~~ke~A~~aL~nL~~~~~------~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~ 709 (729)
..-...+++.+... +...+..++..+-.+....+ ..+..+...|....|-.+-..+++....
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHH
Confidence 12355677777643 34444443333333444332 2344455667666665555555555443
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=83.90 E-value=18 Score=38.96 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=89.4
Q ss_pred cCcHHHHHHhhcC-----------CCHHHHHHHHHHHHhcccCcHHHHHHHH-cCcHHHHHHhcC-CCHHHHHHHHHHHH
Q 004806 567 SGAIGPLVDLLGN-----------GTPRGKKDAATALFNLSIYHENKARIVQ-AGAVKHLVDLMD-PAAGMVDKAVAVLA 633 (729)
Q Consensus 567 ~g~I~~Lv~LL~~-----------~~~~v~~~Al~aL~nLs~~~en~~~lv~-~G~V~~Lv~LL~-~~~~v~e~Al~~L~ 633 (729)
.+|+..|+.+|.. .+......++.||..|..+..+...++. ..+|..|+..|. ....++..++.+|+
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4556777766641 2346677888899999888888887776 668888888885 56778889999999
Q ss_pred HHhCCcc---hHHHHHh----------CCcHHHHHHHHcc-CCHHHHHHHHHHHHHHhhCCH--h----hHHHHHhCCCH
Q 004806 634 NLATIPD---GRVAIGQ----------ENGIPVLVEVVEL-GSARGKENAAAALLQLCTNSS--R----FCSMVLQEGAV 693 (729)
Q Consensus 634 nLa~~~e---~r~~i~~----------~g~I~~Lv~lL~s-~s~~~ke~A~~aL~nL~~~~~--~----~~~~vl~~G~v 693 (729)
.+|..++ |...+++ ..-...++..|.. .+...+..++..+-.+....+ + .+..+...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 9998654 3544432 2236677888876 345555544444444444432 2 33445566766
Q ss_pred HHHHHhhhCCCHH
Q 004806 694 PPLVALSQSGTPR 706 (729)
Q Consensus 694 ~~Lv~Ll~sg~~r 706 (729)
..|-.+-..+++.
T Consensus 268 ~il~~lr~~~~~~ 280 (383)
T 3eg5_B 268 QVLQELREIENED 280 (383)
T ss_dssp HHHHHHTTSCCHH
T ss_pred HHHHHHhcCCChh
Confidence 6665543333444
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=82.71 E-value=14 Score=37.12 Aligned_cols=177 Identities=13% Similarity=0.054 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 004806 441 GIETQVRKLVEDLK---STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND 517 (729)
Q Consensus 441 ~~~~~V~~Lv~~L~---s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~ 517 (729)
.++..|..|++.+. ++...+...|...+..+.. ...++....|..++..+++.-|+.+|..+ . +
T Consensus 34 ~~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~~-----------~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-~ 100 (240)
T 3l9t_A 34 SMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSNDG-----------EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K 100 (240)
T ss_dssp CHHHHHHHHHHHHTC-----CHHHHHHHHHHHHSCH-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-C
Confidence 46778888888775 3333333333333333321 12234445566777788999999988777 2 1
Q ss_pred ccHHHHHhcCCHHHHHH-HhcCCCHHHHHHHHHHHHHhcc--CcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 518 NNKSAIANANAIEPLIH-VLQTGSPEARENAAATLFSLSV--IEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~-lL~s~~~e~r~~Aa~aL~nLS~--~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
. ...++.|.. +-...+-.+++.++.++..++. .++ ..++.+...+++++..+++.|...+.-
T Consensus 101 -~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rp 165 (240)
T 3l9t_A 101 -D------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRI 165 (240)
T ss_dssp -S------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCS
T ss_pred -c------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHH
Confidence 1 124555555 4456678999999999888764 221 267888899999999999999988765
Q ss_pred cccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHh
Q 004806 595 LSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQ 647 (729)
Q Consensus 595 Ls~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~ 647 (729)
-+..+.-+ .--.-+++.|-.+. +++.-++......|..++. +++-...+++
T Consensus 166 W~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 166 WTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp GGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 33221000 00011344444455 4566777777889999998 5555555544
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=82.49 E-value=28 Score=37.35 Aligned_cols=134 Identities=18% Similarity=0.252 Sum_probs=89.7
Q ss_pred cCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCccHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHH
Q 004806 485 CGAINILVDMLHS-----------SETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATLF 552 (729)
Q Consensus 485 ~GaI~~Lv~LL~s-----------~d~~v~e~Al~aL~nLs~~~~~k~~I~~-~g~I~~Lv~lL~s~~~e~r~~Aa~aL~ 552 (729)
.+|+..|+.+|.. .+...+..++.+|..|..+..+...+.. ..++..|+..|.+..+.++..++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5788888887742 1456788889999888766666555555 478999999999889999999998888
Q ss_pred HhccCcc--h-hhhh----------hccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccCcH-------HHHHHHHcCcH
Q 004806 553 SLSVIED--N-KIKI----------GRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIYHE-------NKARIVQAGAV 611 (729)
Q Consensus 553 nLS~~~e--~-k~~I----------~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~~e-------n~~~lv~~G~V 611 (729)
.+|.... + ...+ .+..-+..+|+.|..+ +.+.+..++..+-.|....+ .|..+...|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8887543 3 2222 2234667788888744 55666555555444544322 23445667777
Q ss_pred HHHHHhc
Q 004806 612 KHLVDLM 618 (729)
Q Consensus 612 ~~Lv~LL 618 (729)
+.|-.+-
T Consensus 206 ~il~~Lr 212 (386)
T 2bnx_A 206 QVLQELR 212 (386)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7765554
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=82.36 E-value=0.82 Score=46.39 Aligned_cols=154 Identities=14% Similarity=0.104 Sum_probs=99.2
Q ss_pred ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004806 475 NMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL 554 (729)
Q Consensus 475 s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nL 554 (729)
++..|...+..=....|..++.++++.|+..|+..| . .+.|..++.+.+..+|..++.. |
T Consensus 63 ~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L~~ll~D~d~~VR~~aA~~---l 122 (244)
T 1lrv_A 63 FWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRL---P--------------REQLSALMFDEDREVRITVADR---L 122 (244)
T ss_dssp SHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGGGGTTTCSCHHHHHHHHHH---S
T ss_pred CHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHHHHHHcCCCHHHHHHHHHh---C
Confidence 445555555432344566677778888888777542 1 1356777888888888887773 2
Q ss_pred ccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHH
Q 004806 555 SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLA 633 (729)
Q Consensus 555 S~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~ 633 (729)
. .+.|..++++++..++..++.. +. .+.+..++ +++..++..++..
T Consensus 123 ~--------------~~~L~~L~~D~d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~~VR~~aa~~-- 169 (244)
T 1lrv_A 123 P--------------LEQLEQMAADRDYLVRAYVVQR---IP--------------PGRLFRFMRDEDRQVRKLVAKR-- 169 (244)
T ss_dssp C--------------TGGGGGGTTCSSHHHHHHHHHH---SC--------------GGGGGGTTTCSCHHHHHHHHHH--
T ss_pred C--------------HHHHHHHHcCCCHHHHHHHHHh---cC--------------HHHHHHHHcCCCHHHHHHHHHc--
Confidence 1 1245566788888888888773 21 12233344 5667777666553
Q ss_pred HHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHH
Q 004806 634 NLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQA 713 (729)
Q Consensus 634 nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~ 713 (729)
+ ..+.|..++...+..++..++..| ..+.|..++.+....||..+..
T Consensus 170 -l--------------~~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~ 216 (244)
T 1lrv_A 170 -L--------------PEESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVE 216 (244)
T ss_dssp -S--------------CGGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHH
T ss_pred -C--------------CHHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHH
Confidence 1 123455666778888988888653 2467888889999999998876
Q ss_pred H
Q 004806 714 L 714 (729)
Q Consensus 714 l 714 (729)
-
T Consensus 217 ~ 217 (244)
T 1lrv_A 217 H 217 (244)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=80.85 E-value=7.8 Score=42.87 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHH
Q 004806 579 NGTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVE 656 (729)
Q Consensus 579 ~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~ 656 (729)
.++...++.|+..|...-. +++.. ..++..+++|+ +++..++..|+..|..+|.. +... .++..|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~-----kiaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP-----RVADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh-----hHHHHHHH
Confidence 4578889999998887654 66643 34667899999 57788999999999999986 3322 23678899
Q ss_pred HHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHH
Q 004806 657 VVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALL 715 (729)
Q Consensus 657 lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL 715 (729)
+|...++......-.+|..|...++. +.+..|+.-+.++++.+|+++...|
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHH
Confidence 99999888888888888888888764 3455566666666777777766544
|
| >2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A | Back alignment and structure |
|---|
Probab=80.71 E-value=1.4 Score=37.87 Aligned_cols=57 Identities=25% Similarity=0.517 Sum_probs=44.2
Q ss_pred CCCCC-CcccccCccccccCceecC-C-C----ccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 004806 134 PVPIP-SDFCCPLSLELMTDPVIVA-S-G----QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 191 (729)
Q Consensus 134 ~~~~p-~~f~CpI~~~lm~dPV~~~-~-G----~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 191 (729)
.+.-| +.+.|||++++-+.=|.+. + | .-||..++.+-...|. .=|.+|.|++..+++
T Consensus 20 ~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~-~HPLSREpit~sMIv 83 (102)
T 2kkx_A 20 RLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGL-PHPLTREPITASIIV 83 (102)
T ss_dssp TTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTC-CCTTTCCCCCTTTEE
T ss_pred hccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCC-CCCCccCCCCHhhEe
Confidence 34444 5689999999999999874 2 2 2399999999998874 479999999887654
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=80.61 E-value=23 Score=35.53 Aligned_cols=143 Identities=14% Similarity=0.056 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHH-HHcCCCHHHHHHHHHHHHHhhc--CCccH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENAVTALLNLSI--NDNNK 520 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~-LL~s~d~~v~e~Al~aL~nLs~--~~~~k 520 (729)
..+.....+.+++..++|..|+..|..+ .. ....++.+.. +-..++-.|++.+..++..++. +++
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~---------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK---------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT---------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cC---------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3344444445577788899999977766 21 1234566666 5556789999999999988863 332
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhc-cCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC-
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR-SGAIGPLVDLLGNGTPRGKKDAATALFNLSIY- 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~-~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~- 598 (729)
..++.+...+.+.+..+|..|...+.--+.... ...+ .-+++.|-.+..+++.-+++...++|..++..
T Consensus 139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~---~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY---FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT---TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch---hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 257788889999999999988876543221110 1111 13566666667778889999999999999984
Q ss_pred cHHHHHHHH
Q 004806 599 HENKARIVQ 607 (729)
Q Consensus 599 ~en~~~lv~ 607 (729)
++-...+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444344443
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=80.41 E-value=45 Score=40.63 Aligned_cols=218 Identities=14% Similarity=0.082 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhcC-----C
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLH-SSETKIQENAVTALLNLSIN-----D 517 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~-s~d~~v~e~Al~aL~nLs~~-----~ 517 (729)
..+..++..+.+++.+.+.+|-..|..+-+.. ++...+..+|. +.++.++..|+.+|.+.... +
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~ 85 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCT----------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHcCc----------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCC
Confidence 45666777776666677778888887775532 44555555554 45889999999999886431 2
Q ss_pred ccHHHHHhcCCHHHHHHHhcCC-----CHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHH
Q 004806 518 NNKSAIANANAIEPLIHVLQTG-----SPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 592 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~lL~s~-----~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL 592 (729)
...........+..+......+ ..-++...+.+|..++..+-.. .....++.|+.+++.+ +.....++.+|
T Consensus 86 ~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~---~Wp~~l~dL~~~l~~~-~~~~~~~L~iL 161 (1023)
T 4hat_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSSSS-VNVCENNMIVL 161 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHTTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh---hchHHHHHHHHHhcCC-HHHHHHHHHHH
Confidence 2222223333444444433221 2334444666666665432111 2357888999988654 34456666666
Q ss_pred HhcccC---------cHHHHH-----HHH--cCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHH
Q 004806 593 FNLSIY---------HENKAR-----IVQ--AGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVL 654 (729)
Q Consensus 593 ~nLs~~---------~en~~~-----lv~--~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~L 654 (729)
..|+.. ...|.. +.. ..++..+..+| ..+..++..++.+|......-+ -..+.+.+.++.+
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~~l 240 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-YRYIYETNILELL 240 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-HHHhcchhHHHHH
Confidence 655321 112222 222 22333344444 3456778888888888877433 3445667788888
Q ss_pred H-HHHccCCHHHHHHHHHHHHHHhh
Q 004806 655 V-EVVELGSARGKENAAAALLQLCT 678 (729)
Q Consensus 655 v-~lL~s~s~~~ke~A~~aL~nL~~ 678 (729)
. .+|. ++..+..|+.+|..+..
T Consensus 241 ~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 241 STKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CHHHHHHHHHHHHHHHc
Confidence 8 7774 67899999999999987
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 729 | ||||
| d1t1ha_ | 78 | g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre | 4e-22 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-22 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-19 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 8e-19 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-18 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 7e-17 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-15 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 8e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.001 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-21 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 9e-17 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-16 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 6e-07 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-06 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 9e-18 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 3e-08 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 0.003 | |
| d2c2la2 | 80 | g.44.1.2 (A:225-304) STIP1 homology and U box-cont | 1e-17 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-16 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-09 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 3e-08 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 6e-07 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 6e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 9e-05 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 2e-11 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 3e-11 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 3e-11 | |
| d1wgma_ | 98 | g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu | 2e-09 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 9e-08 | |
| d1rmda2 | 86 | g.44.1.1 (A:1-86) V(D)J recombination activating p | 6e-07 | |
| d2baya1 | 56 | g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { | 6e-06 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 0.002 |
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 88.6 bits (219), Expect = 4e-22
Identities = 43/74 (58%), Positives = 56/74 (75%)
Query: 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 196
P F CP+SLELM DPVIV++GQTYER+ I+KW+D G CPK+++TL H L PNY +
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 197 KALIANWCELNNVK 210
K+LIA WCE N ++
Sbjct: 65 KSLIALWCESNGIE 78
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.4 bits (243), Expect = 4e-22
Identities = 39/185 (21%), Positives = 56/185 (30%), Gaps = 20/185 (10%)
Query: 453 LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLN 512
L S +AT L N + GAI LV +L + Q
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423
Query: 513 LSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGP 572
+ + E E L L+ N+I I I
Sbjct: 424 QQFVEGVRM-------------------EEIVEGCTGALHILARDVHNRIVIRGLNTIPL 464
Query: 573 LVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAV 631
V LL + ++ AA L L+ E I GA L +L+ G+ A AV
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 524
Query: 632 LANLA 636
L ++
Sbjct: 525 LFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.8 bits (218), Expect = 5e-19
Identities = 55/278 (19%), Positives = 102/278 (36%), Gaps = 8/278 (2%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDML-HSSETKIQE 504
+ +L + L +A + L+K ++ + ++ +V + ++++ +
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 505 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564
L NLS + AI + I L+ +L + A TL +L + ++
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 565 GR-SGAIGPLVDLLGNGTPRGKKDAATALFNL-SIYHENKARIVQAGAVKHLVDLMD--P 620
R +G + +V LL + L L E+K I+ +G + LV++M
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
Query: 621 AAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680
++ VL L+ + AI + G+ L + S R +N L L S
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---S 255
Query: 681 SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718
EG + LV L S A +LS
Sbjct: 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.0 bits (216), Expect = 8e-19
Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 21/205 (10%)
Query: 474 HNMDNRMVIANCGAINILVDMLHSSETK-IQENAVTALLNLSINDNNKSAIANANAIEPL 532
+ + + ++V +LH + + V + NL++ N + + AI L
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402
Query: 533 IHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATAL 592
+ +L + + + +E +++ G G AL
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG-------------------AL 443
Query: 593 FNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGI 651
L+ N+ I + V L+ P + A VL LA + AI E
Sbjct: 444 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 503
Query: 652 PVLVEVVELGSARGKENAAAALLQL 676
L E++ + AAA L ++
Sbjct: 504 APLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.6 bits (215), Expect = 1e-18
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Query: 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANA-NAIEPLIHVLQT-GSPEA 543
AI L +L+ + + A + LS + ++ AI + + ++ +Q E
Sbjct: 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76
Query: 544 RENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY-HENK 602
A TL +LS + + I +SG I LV +LG+ A T L NL ++ K
Sbjct: 77 ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136
Query: 603 ARIVQAGAVKHLVDLMDP 620
+ AG ++ +V L++
Sbjct: 137 MAVRLAGGLQKMVALLNK 154
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.9 bits (200), Expect = 7e-17
Identities = 52/282 (18%), Positives = 92/282 (32%), Gaps = 26/282 (9%)
Query: 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETK 501
+E + LV+ L S ++ A L L +N N+M++ G I LV + + +
Sbjct: 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323
Query: 502 IQENAVTALLNLSI------NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSL- 554
+ + ++A+ + ++ +L S A L
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383
Query: 555 SVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHL 614
++ N + GAI LV LL ++ + + +
Sbjct: 384 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI-------- 435
Query: 615 VDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674
V+ L LA R+ I N IP+ V+++ + AA L
Sbjct: 436 ----------VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485
Query: 675 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716
+L + + EGA PL L S A A+L
Sbjct: 486 ELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.4 bits (191), Expect = 1e-15
Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 7/220 (3%)
Query: 509 ALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRS- 567
A++NL IN + + +A AI L +L AA + LS E ++ I RS
Sbjct: 1 AVVNL-INYQDDAELAT-RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 568 GAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVD-LMDPAAGMV 625
+ +V + N + A L NLS + E I ++G + LV L P ++
Sbjct: 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118
Query: 626 DKAVAVLANLATIPDGRVAIGQENG-IPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 684
A+ L NL +G + G + +V ++ + + L L +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178
Query: 685 SMVLQEGAVPPLV-ALSQSGTPRAKEKAQALLSYFRNQRH 723
++L G LV + + +L
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 218
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (142), Expect = 8e-10
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
+ V+ L S + QR A L LA + + I GA L ++LHS +
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATY 520
Query: 506 AVTALLNLS 514
A L +S
Sbjct: 521 AAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (91), Expect = 0.001
Identities = 53/322 (16%), Positives = 98/322 (30%), Gaps = 49/322 (15%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
+ LV+ L S A L L H +M + G + +V +L+ + K
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162
Query: 506 AVTALLNLSINDNNKSAIANANAIEPLIHVL--QTGSPEARENAAATLFSLSVIEDNKIK 563
L L+ + I A+ + + + + L LSV NK
Sbjct: 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 222
Query: 564 IGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHEN---------------------- 601
I +G + L L + + R ++ L NLS
Sbjct: 223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINV 282
Query: 602 ------------------KARIVQAGAVKHLVDLMDPAAGMVDKAVAVL-------ANLA 636
K + Q G ++ LV + A D + +
Sbjct: 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342
Query: 637 TIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPL 696
+ A+ G+PV+V+++ S A L++ + + ++GA+P L
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402
Query: 697 VALSQSGTPRAKEKAQALLSYF 718
V L + + +
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQ 424
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.7 bits (236), Expect = 2e-21
Identities = 45/299 (15%), Positives = 86/299 (28%), Gaps = 34/299 (11%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQEN 505
+ K V+ L S Q ++ + + + G I LVD+L S +Q+
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 506 AVTALLNLSI-NDNNKSAIANANAIEPLIHV-LQTGSPEARENAAATLFSLSVIEDNKIK 563
A AL NL + NK N I + + +TG+ E ++ L++LS ++ K +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 564 IGRSGAI---------------GPLVDLLGNGTPRGKKDAATALFNLSIYHENKARIV-Q 607
+ G P +A L NLS + +
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 608 AGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELG------ 661
+G + L+ + + N + ++
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243
Query: 662 ----------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 710
S + N L + + + A+ + L A +
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.0 bits (198), Expect = 9e-17
Identities = 42/305 (13%), Positives = 92/305 (30%), Gaps = 32/305 (10%)
Query: 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKI 502
+ + AT LR L+ + + + G I+ L+ + +
Sbjct: 142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201
Query: 503 Q------ENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEA----------REN 546
+ EN + L NLS + + + S N
Sbjct: 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNN 261
Query: 547 AAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE------ 600
L + S AI ++L+G +A +
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321
Query: 601 -NKARIVQAGAVKHLVDLMDPAAGMVDK-AVAVLANLATIPDGRVAIGQENGIPVLVEVV 658
++ ++ + + L+ V + ++L+N++ P +G + P + ++
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQ-VFPEVTRLL 380
Query: 659 ELG------SARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQS-GTPRAKEKA 711
S +A + L + + + ++ L +S +P+A E A
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440
Query: 712 QALLS 716
+ LLS
Sbjct: 441 RLLLS 445
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.9 bits (195), Expect = 2e-16
Identities = 22/169 (13%), Positives = 59/169 (34%), Gaps = 15/169 (8%)
Query: 446 VRKLVEDLKSTSLDTQREATAELRLLAKHN------MDNRMVIANCGAINILVDMLHSSE 499
+R + + + D EA A + ++++ + + +L S
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344
Query: 500 TKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTG------SPEARENAAATLFS 553
+ + + + L N+S + + N + +L + S + +A T+ +
Sbjct: 345 SDVVRSGASLLSNMSRHPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTVRN 403
Query: 554 LSVI-EDNKIKIGRSGAIGPLVDLL-GNGTPRGKKDAATALFNLSIYHE 600
L + S + +++L + +P+ + A L ++ E
Sbjct: 404 LMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 6e-07
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Query: 441 GIETQVRKLVED--LKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS 498
R L S S D A +R L + +N ++++ SS
Sbjct: 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS 431
Query: 499 ET-KIQENAVTALLNLSINDNNKSAI 523
+ K E A L ++ + + +
Sbjct: 432 ASPKAAEAARLLLSDMWSSKELQGVL 457
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 14/65 (21%), Positives = 23/65 (35%)
Query: 651 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEK 710
IP V+ + + + A + C V Q G + LV L +S ++
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 711 AQALL 715
A L
Sbjct: 64 AAGAL 68
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.8 bits (208), Expect = 9e-18
Identities = 59/287 (20%), Positives = 117/287 (40%), Gaps = 7/287 (2%)
Query: 439 LSGIETQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINILVDMLHS 497
S ++ ++ ++ + L S + Q AT + R +L++ + V+ G + LV+ +
Sbjct: 71 YSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 130
Query: 498 SET-KIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLS 555
++ +Q A AL N+ S + +A+A+ I +L TGS E +E A L +++
Sbjct: 131 NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 190
Query: 556 VI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI-VQAGAVKH 613
D + + + A+ P++ L + P + A L NL + + V + A+
Sbjct: 191 GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 250
Query: 614 LVDLMDPAAGMVDKAVA--VLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAA 671
L L+ + + A+ LVE++ S + A
Sbjct: 251 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 310
Query: 672 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718
A+ + T + +V+ G +P L L S K++A +S
Sbjct: 311 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.3 bits (129), Expect = 3e-08
Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 17/183 (9%)
Query: 454 KSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNL 513
S Q A + + N V+ N G + L +L S + I++ A + N+
Sbjct: 298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357
Query: 514 SI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGR----SG 568
+ N A+ +AN I PL+ +L+ + ++ A + + S + I R G
Sbjct: 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 417
Query: 569 AIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR------------IVQAGAVKHLVD 616
I PL DLL R + AL N+ E I +AG ++ + +
Sbjct: 418 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 477
Query: 617 LMD 619
Sbjct: 478 CQQ 480
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.5 bits (88), Expect = 0.003
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 15/109 (13%)
Query: 454 KSTSLDTQREATAELRLLAKHNMDNRMVI---ANCGAINILVDMLHSSETKIQENAVTAL 510
+ T++EA + + + +I + G I L D+L ++ +I E + AL
Sbjct: 382 EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 441
Query: 511 LNL------------SINDNNKSAIANANAIEPLIHVLQTGSPEARENA 547
N+ + N I A +E + + Q + + E A
Sbjct: 442 ENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKA 490
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.0 bits (186), Expect = 1e-17
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTV 196
IP C +S ELM +P I SG TY+R I++ + P TR L LIPN +
Sbjct: 4 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63
Query: 197 KALIANWCELN 207
K +I + N
Sbjct: 64 KEVIDAFISEN 74
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 79.8 bits (195), Expect = 2e-16
Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 6/200 (3%)
Query: 433 AETRADLSGIETQVRKLVEDLKSTSLDTQREATAELR-LLAKHNMDNRMVIANCGAINIL 491
A+ ++ + V +V+ + S +L++Q +AT R LL++ I G I
Sbjct: 2 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 61
Query: 492 VDMLHSSE-TKIQENAVTALLNL-SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAA 549
V L ++ + IQ + AL N+ S A+ + AI I +L + E A
Sbjct: 62 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVW 121
Query: 550 TLFSLSVIEDNKIK-IGRSGAIGPLVDLLGNGTPRGKKDAA--TALFNLSIYHENKARIV 606
L +++ + + GAI PL+ LL + LS NK
Sbjct: 122 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 181
Query: 607 QAGAVKHLVDLMDPAAGMVD 626
AV+ ++ + D
Sbjct: 182 PLDAVEQILPTLVRLLHHND 201
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.3 bits (139), Expect = 1e-09
Identities = 54/282 (19%), Positives = 99/282 (35%), Gaps = 11/282 (3%)
Query: 446 VRKLVEDLKSTSL-DTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 504
+ K V L T Q E+ L +A + + + GAI + +L S I E
Sbjct: 58 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 117
Query: 505 NAVTALLNL-SINDNNKSAIANANAIEPLIHVL-----QTGSPEARENAAATLFSLSVI- 557
AV AL N+ + + AI+PL+ +L T + N TL +L
Sbjct: 118 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 177
Query: 558 EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKARI-VQAGAVKHLVD 616
+ LV LL + P D+ A+ L+ + + V+ G V LV
Sbjct: 178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 237
Query: 617 LMD--PAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALL 674
L+ + A+ + + + + V ++ ++ A +
Sbjct: 238 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 297
Query: 675 QLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS 716
+ V+ G VP LV + + +++A ++
Sbjct: 298 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 339
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.4 bits (129), Expect = 3e-08
Identities = 31/180 (17%), Positives = 70/180 (38%), Gaps = 10/180 (5%)
Query: 450 VEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTA 509
V+ L +T L A + + + + + GA+ + +L + +T IQ+ A
Sbjct: 236 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 295
Query: 510 LLNLSINDNN-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV--IEDNKIKIGR 566
+ N++ + + N + L+ VL + ++ AA + + + + + +
Sbjct: 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355
Query: 567 SGAIGPLVDLLGNGTPRGKKDAATALFNL-----SIYHENKAR--IVQAGAVKHLVDLMD 619
G I PL++LL + + A+ N+ + K I + G + + L
Sbjct: 356 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 415
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.2 bits (118), Expect = 6e-07
Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 445 QVRKLVEDLKSTSLDTQREATAELRLLAKH-NMDNRMVIANCGAINILVDMLHSSETKIQ 503
V LV L TQ+EA + ++ + + +CG I L+++L + +TKI
Sbjct: 315 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 374
Query: 504 ENAVTALLNL-------SINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATL 551
+ + A+ N+ + I ++ + + + + + + +
Sbjct: 375 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.1 bits (110), Expect = 6e-06
Identities = 44/280 (15%), Positives = 103/280 (36%), Gaps = 13/280 (4%)
Query: 452 DLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALL 511
DL + + R T L L ++ + A + LV +LH ++ ++ ++ A+
Sbjct: 154 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 213
Query: 512 NLSINDNNK--SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGA 569
L+ N + + + + + T P A ++ ++ K+ +GA
Sbjct: 214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 273
Query: 570 IGPLVDLLGNGTPRGKKDAATALFNLSIY-HENKARIVQAGAVKHLVDLM-DPAAGMVDK 627
+ LL N +K+A + N++ + ++V G V LV ++ +
Sbjct: 274 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 333
Query: 628 AVAVLANLAT--IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCT------N 679
A + N + + V + I L+ ++ + + A+ +
Sbjct: 334 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 393
Query: 680 SSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLS-YF 718
+ + M+ + G + + AL + + + L+ YF
Sbjct: 394 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 433
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.3 bits (100), Expect = 9e-05
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 41/154 (26%)
Query: 567 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKAR--IVQAGAVKHLVDLMDPAAGM 624
+ ++ +V + + + A A L + I++AG + V +
Sbjct: 12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL------ 65
Query: 625 VDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFC 684
G+ + P+ + +A AL + + +S
Sbjct: 66 ---------------------GKTDCSPI------------QFESAWALTNIASGTSEQT 92
Query: 685 SMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718
V+ GA+P ++L S E+A L
Sbjct: 93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 126
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.8 bits (151), Expect = 2e-11
Identities = 40/243 (16%), Positives = 80/243 (32%), Gaps = 7/243 (2%)
Query: 448 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENA 506
E ++ + A L L NMDN +++LV L + ++ A
Sbjct: 21 TAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 79
Query: 507 VTALLNLS-INDNNKSAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKI 564
+ S + + A+ L+ +L R A + L ++ +
Sbjct: 80 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 139
Query: 565 GRSGAIGPLV-DLLGNGTPRGKKDAATALFNLSIYH-ENKARIVQAGAVKHLVDLM-DPA 621
++ + + K +A L NL + H E+K + G V+ LV L+
Sbjct: 140 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH 199
Query: 622 AGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681
+ + + L +L T V +E + + + + L+ C
Sbjct: 200 SPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLL 259
Query: 682 RFC 684
+ C
Sbjct: 260 QTC 262
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.4 bits (150), Expect = 3e-11
Identities = 39/251 (15%), Positives = 86/251 (34%), Gaps = 6/251 (2%)
Query: 476 MDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIH- 534
M + + + + + +++ + +E A+ L +L N +N + + + L+
Sbjct: 7 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGR 66
Query: 535 VLQTGSPEARENAAATLFSLS-VIEDNKIKIGRSGAIGPLVDLLGNGT-PRGKKDAATAL 592
L+ G+ R AA + + S + + ++ GA+ L+ LL + A A+
Sbjct: 67 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 126
Query: 593 FNLSIYHENKA---RIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPDGRVAIGQEN 649
L E + +V V A + L P+ + +
Sbjct: 127 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 186
Query: 650 GIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKE 709
+ LV +V + E+ AL L T+ + + + + + E
Sbjct: 187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHE 246
Query: 710 KAQALLSYFRN 720
+ Q L +
Sbjct: 247 EYQEELEFCEK 257
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (141), Expect = 3e-11
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 137 IPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDL--GLFVCPKTRQTLAHTTLIPNY 194
+ CP+ LEL+ +PV + + + K ++ G CP + + +L +
Sbjct: 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77
Query: 195 TVKALIANWCEL 206
L+ ++
Sbjct: 78 RFSQLVEELLKI 89
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 2e-09
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 137 IPSDFCCPLSLELMTDPVIVASGQ-TYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYT 195
+F P+ LM DPV++ S + T +R+ I + + P R L + PN
Sbjct: 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL-SDQTDPFNRSPLTMDQIRPNTE 77
Query: 196 VKALIANWCE 205
+K I W
Sbjct: 78 LKEKIQRWLA 87
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (113), Expect = 9e-08
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 124 VMIKQSQICSPVPIPSDF-CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTR 182
+ + Q Q + S F C + E D I G + + W + CP R
Sbjct: 6 IKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 65
Query: 183 QTLAHTTLIP 192
+ T I
Sbjct: 66 CEIKGTEPIV 75
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.7 bits (108), Expect = 6e-07
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 134 PVPIPSDF----CCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189
V P+ F C + ++ DPV + + R I + + + CP R T
Sbjct: 13 AVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72
Query: 190 LIPNYTVKALI 200
L VK+ +
Sbjct: 73 LESP--VKSFL 81
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (98), Expect = 6e-06
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 142 CCPLSLELMTDPVIVA-SGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYT 195
C +S ++ PV+ S +E++ +++++ P T + L+ ++
Sbjct: 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-DTGNDPITNEPLSIEEIVEIVP 55
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 0.002
Identities = 29/194 (14%), Positives = 54/194 (27%), Gaps = 29/194 (14%)
Query: 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQE 504
+ V ++ Q L+ + + +L+ +E +
Sbjct: 887 EYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRN 946
Query: 505 NAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564
L L++ I + L L +GS AR + + I
Sbjct: 947 VVAECLGKLTL-------IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDP 999
Query: 565 GRSGAIGPLVDLLGNGTPRGKKDAATALFNLS-----------------IYHENKA---- 603
IG + L + ++ A + + +Y+E K
Sbjct: 1000 LLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKEL 1059
Query: 604 -RIVQAGAVKHLVD 616
R V+ G KH VD
Sbjct: 1060 IREVEMGPFKHTVD 1073
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.9 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.89 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.88 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.87 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.87 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.87 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.82 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.73 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.72 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 99.5 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.5 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 99.48 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.42 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 99.24 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 99.02 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 98.98 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.83 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.7 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.67 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.6 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.58 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 98.53 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.44 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.41 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.35 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 98.16 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.14 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.12 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 98.07 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.99 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.84 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.8 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.65 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.64 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.62 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.55 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.47 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.46 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.38 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.21 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 97.19 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.08 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.04 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.0 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.54 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 93.91 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 91.53 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 89.89 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 88.16 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 81.72 |
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=9.5e-22 Score=218.89 Aligned_cols=278 Identities=21% Similarity=0.213 Sum_probs=249.3
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s-~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.++.|++.|+. .+.++|..|+++|.+++..+......+...|+++.|+.+|.+++.++++.|+++|.||+.+ +..+
T Consensus 118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r 197 (503)
T d1wa5b_ 118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 197 (503)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHH
Confidence 4678999999984 5778999999999999998888888899999999999999999999999999999999875 5778
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcch-hhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCc
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDN-KIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYH 599 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~-k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~ 599 (729)
..+.+.|++++|+.++.+....++..++++|.+|+..... .......++++.|+.++.+.+..++..++++|.+|+...
T Consensus 198 ~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~ 277 (503)
T d1wa5b_ 198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 277 (503)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC
Confidence 8999999999999999999999999999999999975443 333445689999999999999999999999999999754
Q ss_pred -HHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcch-HHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 004806 600 -ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDG-RVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676 (729)
Q Consensus 600 -en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~-r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL 676 (729)
+....+++.|+++.|+.++ ..+..+...++.+|.+++...+. ...+.+.|+++.|..++.+.++.++..++++|.|+
T Consensus 278 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl 357 (503)
T d1wa5b_ 278 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357 (503)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4567788999999999999 46788889999999999986554 55667889999999999999999999999999999
Q ss_pred hhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 677 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 677 ~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+.+++.....+++.|+++.|+.++.+++.+++..|.++|.++..
T Consensus 358 ~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~ 401 (503)
T d1wa5b_ 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 401 (503)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence 99999888999999999999999999999999999999988864
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=8.8e-23 Score=228.58 Aligned_cols=274 Identities=20% Similarity=0.206 Sum_probs=243.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN-CGAINILVDMLHS-SETKIQENAVTALLNLSINDNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~-~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~~~~k 520 (729)
.+.|+.|+++|++.+..++..|+..|..++.++ ..|..+.. .|+++.|+.+|.. .+.++++.|+.+|.+|+.+++++
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~-~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~ 94 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 356899999999999999999999999999864 55555554 5889999999975 57899999999999999999999
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcc-hhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-C
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIED-NKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-Y 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e-~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~ 598 (729)
..+++.|+++.|+.+|++++++++.+|+++|.+|+.+.+ .+..+.+.|+|+.|+.+|+++++.++..++.+|.+|+. .
T Consensus 95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 174 (529)
T d1jdha_ 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999998544 56777788999999999999999999999999999987 5
Q ss_pred cHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHH
Q 004806 599 HENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQL 676 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL 676 (729)
.+++..+...|+++.|+.++ .....+...++.++.+++..++.+..+.+.|+++.|+.++.+++..++.+|+++|.++
T Consensus 175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~l 254 (529)
T d1jdha_ 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhc
Confidence 56778888999999999999 3557788999999999999999999999999999999999999999999999999999
Q ss_pred hhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 677 CTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 677 ~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
...... .....|+++.|+.++.+++..+++.|..+|..|..
T Consensus 255 s~~~~~---~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~ 295 (529)
T d1jdha_ 255 SDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cccccc---hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhcc
Confidence 765432 22234789999999999999999999999998864
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=2.3e-21 Score=209.79 Aligned_cols=279 Identities=20% Similarity=0.219 Sum_probs=245.1
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLKS-TSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s-~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.++.|+++|++ .++++|..|+++|.+++..+++.+..+.+.|+++.|+.+|.+++.++++.|+++|.||+.+ +..+
T Consensus 55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~ 134 (434)
T d1q1sc_ 55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134 (434)
T ss_dssp TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHH
Confidence 3679999999974 5678999999999999998888999999999999999999999999999999999999876 4567
Q ss_pred HHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhccCcchhh-hhhccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 521 SAIANANAIEPLIHVLQTGS-----PEARENAAATLFSLSVIEDNKI-KIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~-----~e~r~~Aa~aL~nLS~~~e~k~-~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
..+.+.|+++.|+.++.... ......+++++.+++....... .....++++.|+.++.++++.++..|+++|.+
T Consensus 135 ~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~ 214 (434)
T d1q1sc_ 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 214 (434)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcc
Confidence 88889999999999998654 3456778888999987654433 33456889999999999999999999999999
Q ss_pred cccCc-HHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc-chHHHHHhCCcHHHHHHHHccCCHHHHHHHHH
Q 004806 595 LSIYH-ENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIP-DGRVAIGQENGIPVLVEVVELGSARGKENAAA 671 (729)
Q Consensus 595 Ls~~~-en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~-e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~ 671 (729)
|+..+ +....+...|+++.|+.++ ..+..++..++.+|.+++... +.+..+.+.|+++.|+.++.+.++.+++.|++
T Consensus 215 l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~ 294 (434)
T d1q1sc_ 215 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 294 (434)
T ss_dssp HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred cchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHH
Confidence 98865 4556667899999999999 467889999999999999854 55778889999999999999999999999999
Q ss_pred HHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 672 ALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 672 aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
+|.+++.........+.+.|+++.|+.++.+++..++..|.++|.++..+
T Consensus 295 ~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~ 344 (434)
T d1q1sc_ 295 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 344 (434)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhc
Confidence 99999999988889999999999999999999999999999999888654
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=7.8e-22 Score=220.78 Aligned_cols=275 Identities=24% Similarity=0.265 Sum_probs=244.0
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccH
Q 004806 443 ETQVRKLVEDLK-STSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~-s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~~k 520 (729)
.+.|+.|++.|+ ..+.+++..|+..|..++. +++++..+.+.|+++.|+.+|+++++.++..|+++|.||+.+ +..+
T Consensus 58 ~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 136 (529)
T d1jdha_ 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhh
Confidence 568999999997 4678999999999999997 678999999999999999999999999999999999999876 5567
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCC-CHHHHHHHHHHHHhcccC
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNG-TPRGKKDAATALFNLSIY 598 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~Al~aL~nLs~~ 598 (729)
..+.+.|+++.|+.+|++++++++..++.+|.+|+.. .+.+..+...|+++.|+.+++.. ...++..++.++.|++.+
T Consensus 137 ~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~ 216 (529)
T d1jdha_ 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence 7788999999999999999999999999999999974 55677778889999999999765 578889999999999999
Q ss_pred cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 599 HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 599 ~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
++++..+++.|+++.|+.++ +.+..+...++++|.+++...... ....|+++.|++++.+++..+++.|+++|++|+
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~--~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~ 294 (529)
T d1jdha_ 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch--hhhhhcchhhhhhcccccHHHHHHHHHHHHhhc
Confidence 99999999999999999999 467888999999999998644332 223467999999999999999999999999999
Q ss_pred hCCHhhHHHHHhCCCHHHHHHhhh--CCCHHHHHHHHHHHHHhhc
Q 004806 678 TNSSRFCSMVLQEGAVPPLVALSQ--SGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 678 ~~~~~~~~~vl~~G~v~~Lv~Ll~--sg~~rvr~~A~~lL~~L~~ 720 (729)
.+++..+..+.+.|+++.|+.++. ++.+.+++.|..+|+.+..
T Consensus 295 ~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~ 339 (529)
T d1jdha_ 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence 999989999999999999999885 4557899999999988864
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=3.9e-21 Score=208.03 Aligned_cols=280 Identities=19% Similarity=0.197 Sum_probs=240.9
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChh-hHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhcC-Cc
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMD-NRMVIANCGAINILVDMLHS-SETKIQENAVTALLNLSIN-DN 518 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~-nr~~I~~~GaI~~Lv~LL~s-~d~~v~e~Al~aL~nLs~~-~~ 518 (729)
..+.|..+|+.|++++++.|..|+..|+++...... ....+.+.|++|.|+++|.+ ++++++..|+++|.+++.. ++
T Consensus 11 ~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~ 90 (434)
T d1q1sc_ 11 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 90 (434)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHH
T ss_pred hhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChh
Confidence 356799999999999999999999999987653322 35678889999999999965 5688999999999999765 56
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCC-----HHHHHHHHHHH
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGT-----PRGKKDAATAL 592 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~-----~~v~~~Al~aL 592 (729)
.+..+.+.|+++.|+.+|.+++.++++.|+++|.+|+.. +..+..+...|+++.|+.++...+ ......+++++
T Consensus 91 ~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l 170 (434)
T d1q1sc_ 91 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 170 (434)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred hhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHH
Confidence 788899999999999999999999999999999999985 566777888899999999998753 35567788899
Q ss_pred HhcccCcHH-HHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcc-hHHHHHhCCcHHHHHHHHccCCHHHHHHH
Q 004806 593 FNLSIYHEN-KARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD-GRVAIGQENGIPVLVEVVELGSARGKENA 669 (729)
Q Consensus 593 ~nLs~~~en-~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e-~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A 669 (729)
.+++..... .......++++.|+.++ ..+..++..++++|.+|+.... ....+...|+++.|++++.+.+..++..|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~a 250 (434)
T d1q1sc_ 171 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250 (434)
T ss_dssp HHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhch
Confidence 999875543 33345677899999999 4678899999999999998654 45666788999999999999999999999
Q ss_pred HHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 670 AAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 670 ~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
+.+|.+++.+++.....+++.|+++.|+.++.+.++.+++.|.++|..+...
T Consensus 251 l~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 302 (434)
T d1q1sc_ 251 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 302 (434)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccc
Confidence 9999999999988889999999999999999999999999999999988653
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=1.8e-23 Score=176.77 Aligned_cols=77 Identities=34% Similarity=0.495 Sum_probs=73.2
Q ss_pred CCCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 004806 135 VPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVKL 211 (729)
Q Consensus 135 ~~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~~ 211 (729)
.++|++|.||||+++|+|||+++|||||||.||.+|+..++.+||.||++++..++.||..|+++|++|+++|||..
T Consensus 2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~~~ 78 (80)
T d2c2la2 2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 78 (80)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCCcC
Confidence 35899999999999999999999999999999999999887889999999999999999999999999999999864
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.6e-21 Score=203.00 Aligned_cols=280 Identities=21% Similarity=0.276 Sum_probs=227.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAI 523 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~k~~I 523 (729)
.||.||++|+++++++|..|++.|.+||.+++++|..+.+.|+||.|+.+|++++++++..|+++|.||+. ++.++..+
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999985 46789999
Q ss_pred HhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhccCcchhhhh--------------------------------------
Q 004806 524 ANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKI-------------------------------------- 564 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~e~k~~I-------------------------------------- 564 (729)
.+.|+++.|+.++.. .+.+++..|+++|.+|+.....+...
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 162 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence 999999999999865 56889999999999998754322110
Q ss_pred -------------------hccCcHHHHHHhhcCC---------------------------------------------
Q 004806 565 -------------------GRSGAIGPLVDLLGNG--------------------------------------------- 580 (729)
Q Consensus 565 -------------------~~~g~I~~Lv~LL~~~--------------------------------------------- 580 (729)
...|+++.|+.++++.
T Consensus 163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (457)
T d1xm9a1 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242 (457)
T ss_dssp HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence 0125566666655310
Q ss_pred ------------------------------------------------------CHHHHHHHHHHHHhcccCcH------
Q 004806 581 ------------------------------------------------------TPRGKKDAATALFNLSIYHE------ 600 (729)
Q Consensus 581 ------------------------------------------------------~~~v~~~Al~aL~nLs~~~e------ 600 (729)
++..+..+++++.+++....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 322 (457)
T d1xm9a1 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322 (457)
T ss_dssp -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence 11122344555555554221
Q ss_pred HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc------CCHHHHHHHHHHH
Q 004806 601 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL------GSARGKENAAAAL 673 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s------~s~~~ke~A~~aL 673 (729)
.+..+.+.|+++.|+.++ +.+..++..++.+|.+|+..++.+..+.+ ++++.|+.+|.. .++.++..|+.+|
T Consensus 323 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L 401 (457)
T d1xm9a1 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401 (457)
T ss_dssp HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHH
Confidence 233445689999999999 46788999999999999999988887765 678999999854 3467899999999
Q ss_pred HHHhhCCHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHHHhhcCcCcC
Q 004806 674 LQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLSYFRNQRHGN 725 (729)
Q Consensus 674 ~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~~L~~~~~~~ 725 (729)
.+|+..+++.++.+++.|+++.|+.++.+. ++.+++.|..+|..|..+++-+
T Consensus 402 ~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~ 454 (457)
T d1xm9a1 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence 999999998999999999999999999876 5889999999999997665433
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.87 E-value=2e-23 Score=175.52 Aligned_cols=75 Identities=57% Similarity=1.077 Sum_probs=72.1
Q ss_pred CCCCcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 004806 136 PIPSDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNVK 210 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~~ 210 (729)
++|++|.||||+++|+|||+++|||+|||+||++|+..++.+||.|+.+++..+++||+.||++|++|+++||+.
T Consensus 4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~e 78 (78)
T d1t1ha_ 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCcC
Confidence 589999999999999999999999999999999999987788999999999999999999999999999999973
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=3e-20 Score=206.57 Aligned_cols=276 Identities=19% Similarity=0.223 Sum_probs=243.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIND-NNKS 521 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~-~~k~ 521 (729)
.+.++.|+.+|.+++.+++..|+++|.+++..++..|..+.+.|+++.|+.++.+.+..++..++++|.||+.+. ....
T Consensus 161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~ 240 (503)
T d1wa5b_ 161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 240 (503)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchH
Confidence 457889999999999999999999999999999999999999999999999999999999999999999998764 3344
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcH
Q 004806 522 AIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHE 600 (729)
Q Consensus 522 ~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~e 600 (729)
.....++++.|+.++.+.+.+++..++++|.+|+... +....+.+.|+++.|+.++.+++..++..|+.+|.||+...+
T Consensus 241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~ 320 (503)
T d1wa5b_ 241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 320 (503)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999999754 445677888999999999999999999999999999988554
Q ss_pred -HHHHHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 601 -NKARIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 601 -n~~~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
....+++.|+++.|..++. ++..++..++++|.|++. .++....+.+.++++.++.++.+.+..++..|+++|.|++
T Consensus 321 ~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~ 400 (503)
T d1wa5b_ 321 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 400 (503)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHH
Confidence 4556778999999999994 678889999999999988 4456788889999999999999999999999999999998
Q ss_pred hCC---HhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 678 TNS---SRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 678 ~~~---~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
... ++....+++.|+++.|+.++...++++...+..+|..+
T Consensus 401 ~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~l 444 (503)
T d1wa5b_ 401 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 444 (503)
T ss_dssp HHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 754 34567788999999999999999999888888766654
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.4e-21 Score=168.60 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=69.6
Q ss_pred CCCCCCCcccccCccccccCceecCCC-ccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHcCC
Q 004806 133 SPVPIPSDFCCPLSLELMTDPVIVASG-QTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCELNNV 209 (729)
Q Consensus 133 ~~~~~p~~f~CpI~~~lm~dPV~~~~G-~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~~~~ 209 (729)
...++|++|.||||++||+|||+++|| |||||.||.+||..+ .+||+|+++++..+|+||+.||++|++|++++.-
T Consensus 15 ~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~-~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~ 91 (98)
T d1wgma_ 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred hhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhc-CCcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999876 599999999999875 5799999999999999999999999999999844
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=6.3e-17 Score=165.60 Aligned_cols=221 Identities=20% Similarity=0.251 Sum_probs=179.6
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHH-HHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCCHHHHHH
Q 004806 457 SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVD-MLHSSETKIQENAVTALLNLSIN-DNNKSAIANANAIEPLIH 534 (729)
Q Consensus 457 ~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~-LL~s~d~~v~e~Al~aL~nLs~~-~~~k~~I~~~g~I~~Lv~ 534 (729)
+.+.+..|+..|..|+. +.+++..+...|+++.|+. +|.+++++++..|+.+|.+++.+ +..+..+.+.|+++.|+.
T Consensus 30 ~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~ 108 (264)
T d1xqra1 30 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 108 (264)
T ss_dssp HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 45677889999999996 6688889999999999886 78889999999999999999975 567888999999999999
Q ss_pred HhcC-CCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcH
Q 004806 535 VLQT-GSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAGAV 611 (729)
Q Consensus 535 lL~s-~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V 611 (729)
+|.+ .++.++..++++|.+|+.+ +.++..+...|+++.|+.+|++++..++..++++|.||+. .++++..+++.|++
T Consensus 109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v 188 (264)
T d1xqra1 109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 188 (264)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence 9975 5688999999999999974 5567788889999999999999999999999999999986 68899999999999
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCC-cHH----HHHHHHcc-CCHHHHHHHHHHHHHHhh
Q 004806 612 KHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQEN-GIP----VLVEVVEL-GSARGKENAAAALLQLCT 678 (729)
Q Consensus 612 ~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g-~I~----~Lv~lL~s-~s~~~ke~A~~aL~nL~~ 678 (729)
+.|+.+| +++..+++.|+.+|.+|+. +++.+..+...+ +.. .+.+.+.. .........+.-|++.|.
T Consensus 189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~~~ll~~~~ 263 (264)
T d1xqra1 189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 263 (264)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhc
Confidence 9999999 4678899999999999998 445555554432 232 23333332 223333345556666554
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.2e-16 Score=163.58 Aligned_cols=222 Identities=18% Similarity=0.158 Sum_probs=184.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHH-HhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHH
Q 004806 497 SSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIH-VLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLV 574 (729)
Q Consensus 497 s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~-lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv 574 (729)
..+.+.+..|+.+|.+|+.+.+++..+...|++++|+. +|++++++++..|+.+|.+++.+ +..+..+.+.|+++.|+
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv 107 (264)
T d1xqra1 28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 107 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 34677889999999999988889999999999999885 78889999999999999999984 56788888899999999
Q ss_pred HhhcC-CCHHHHHHHHHHHHhccc-CcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CcchHHHHHhCCc
Q 004806 575 DLLGN-GTPRGKKDAATALFNLSI-YHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLAT-IPDGRVAIGQENG 650 (729)
Q Consensus 575 ~LL~~-~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~ 650 (729)
.+|.+ .++.++..|+++|.+|+. ++.++..++..|+++.|+.++ +.+..++..++.+|.+|+. .++.+..+.+.|+
T Consensus 108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 187 (264)
T d1xqra1 108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 187 (264)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence 99974 578999999999999997 556788889999999999999 5778899999999999987 6788999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCC-CH----HHHHHhhhCCC--HHHHHHHHHHHHHh
Q 004806 651 IPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEG-AV----PPLVALSQSGT--PRAKEKAQALLSYF 718 (729)
Q Consensus 651 I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G-~v----~~Lv~Ll~sg~--~rvr~~A~~lL~~L 718 (729)
++.|+.+|.++++.+++.|+++|++|+..++.....+...+ .. ..+..++.... ....+.+..+++.+
T Consensus 188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~~~ll~~~ 262 (264)
T d1xqra1 188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 262 (264)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887766665432 22 22333333332 33445566666543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.7e-15 Score=160.55 Aligned_cols=238 Identities=22% Similarity=0.238 Sum_probs=188.9
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhcc-Ccchhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSI-NDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSV-IEDNKIK 563 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~-~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~-~~e~k~~ 563 (729)
+.||.|+.+|++++++++..|+++|.||+. ++.+|..+.+.|+|++|+++|++++++++..|+++|.+|+. +++++..
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 469999999999999999999999999987 57899999999999999999999999999999999999996 6778899
Q ss_pred hhccCcHHHHHHhhcC-CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc----------------CCCHHHHH
Q 004806 564 IGRSGAIGPLVDLLGN-GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM----------------DPAAGMVD 626 (729)
Q Consensus 564 I~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL----------------~~~~~v~e 626 (729)
+.+.|+++.|+.++.. .+..++..|+++|.+|+.....+..+...|..+.+..++ ..+..+..
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence 9999999999998875 578899999999999999887777776665554444432 12456677
Q ss_pred HHHHHHHHHhCCcchHHHHHh-CCcHHHHHHHH-----------------------------------------------
Q 004806 627 KAVAVLANLATIPDGRVAIGQ-ENGIPVLVEVV----------------------------------------------- 658 (729)
Q Consensus 627 ~Al~~L~nLa~~~e~r~~i~~-~g~I~~Lv~lL----------------------------------------------- 658 (729)
.++.+|.+++...+.+..+.. .|+++.|+.++
T Consensus 162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T d1xm9a1 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 788888888776666554433 23344444332
Q ss_pred ---------------------------------------------------cc-CCHHHHHHHHHHHHHHhhCCHh----
Q 004806 659 ---------------------------------------------------EL-GSARGKENAAAALLQLCTNSSR---- 682 (729)
Q Consensus 659 ---------------------------------------------------~s-~s~~~ke~A~~aL~nL~~~~~~---- 682 (729)
.. .++..++.+++++.+++.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 321 (457)
T d1xm9a1 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence 21 2445666778888888765431
Q ss_pred -hHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcCcC
Q 004806 683 -FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQRH 723 (729)
Q Consensus 683 -~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~~~ 723 (729)
.+..+.+.|+++.|+.++.++++.+++.|..+|..|.....
T Consensus 322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~ 363 (457)
T d1xm9a1 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh
Confidence 34455678999999999999999999999999999987543
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=2e-15 Score=117.77 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=47.6
Q ss_pred ccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 004806 141 FCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPN 193 (729)
Q Consensus 141 f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN 193 (729)
+.||||+++|+|||++ .|||+|||.||.+|+.++ .+||+||++++.++|+|.
T Consensus 1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~-~~CP~c~~~l~~~dLipi 53 (56)
T d2baya1 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEI 53 (56)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEEC
T ss_pred CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhc-cCCCccCCcCCHHhceeC
Confidence 5799999999999988 599999999999999975 579999999999999874
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=8.7e-15 Score=128.75 Aligned_cols=66 Identities=18% Similarity=0.389 Sum_probs=58.9
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCC--CCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGL--FVCPKTRQTLAHTTLIPNYTVKALIANWCE 205 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~--~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~ 205 (729)
.|.||||+++|+|||+++|||+||+.||.+||.... ..||.||.++...++.||..++++|+.+.+
T Consensus 21 ~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~ 88 (103)
T d1jm7a_ 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (103)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred CcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 478999999999999999999999999999997643 469999999999999999888888887754
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=9.9e-15 Score=123.47 Aligned_cols=66 Identities=21% Similarity=0.384 Sum_probs=56.1
Q ss_pred CCCCCc----ccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCc-ccHHHHHHH
Q 004806 135 VPIPSD----FCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI-PNYTVKALI 200 (729)
Q Consensus 135 ~~~p~~----f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~-pN~~l~~~I 200 (729)
.+.|++ |.||||.++|+|||+++|||+||+.||++|++.++.+||.||.++...++. |...+.+.+
T Consensus 14 ~d~~~d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l 84 (86)
T d1rmda2 14 VDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (86)
T ss_dssp SCCCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred ccchhhhccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence 345554 589999999999999999999999999999987777899999999888776 666666554
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.7e-14 Score=125.44 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=60.0
Q ss_pred CCCcccccCccccccCceec-CCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHH
Q 004806 137 IPSDFCCPLSLELMTDPVIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIPNYTVKALIANWCEL 206 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dPV~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~pN~~l~~~I~~~~~~ 206 (729)
+++.|.||||+++|.|||++ +|||+||+.||.+|+.. .||.||.++...++.||..|+.+|+.+...
T Consensus 19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~ 86 (97)
T d1jm7b_ 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (97)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHHHH
Confidence 35678999999999999986 89999999999999853 499999999999999999999999988543
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=3.2e-12 Score=106.45 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=45.6
Q ss_pred cccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 004806 140 DFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTT 189 (729)
Q Consensus 140 ~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~ 189 (729)
...||||++.+.|||+++|||+||+.||.+|+..+..+||.||+.+....
T Consensus 23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~ 72 (79)
T d1fbva4 23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72 (79)
T ss_dssp TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence 35699999999999999999999999999999877778999999998754
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=2e-11 Score=94.40 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=43.2
Q ss_pred CcccccCccccccCceecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 004806 139 SDFCCPLSLELMTDPVIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLIP 192 (729)
Q Consensus 139 ~~f~CpI~~~lm~dPV~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~p 192 (729)
+.+.||||++.|+|||+++|||+||+.||++| ..+||.||++++...-.|
T Consensus 5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~ 54 (56)
T d1bora_ 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP 54 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence 34799999999999999999999999999765 457999999998765554
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.1e-10 Score=93.19 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=44.2
Q ss_pred CcccccCccccccCc-----eecCCCccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 004806 139 SDFCCPLSLELMTDP-----VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAHTTLI 191 (729)
Q Consensus 139 ~~f~CpI~~~lm~dP-----V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~~~l~ 191 (729)
++..||||++.+..+ ++++|||+||+.||.+|+..+...||.||+++...++.
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~~ 59 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccccc
Confidence 568899999876432 56799999999999999988777899999999776653
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Probab=98.83 E-value=7.1e-10 Score=89.23 Aligned_cols=43 Identities=21% Similarity=0.495 Sum_probs=39.0
Q ss_pred ccCccccccCcee-cCCCccccHHHHHHHHhcCCCCCCCCCccCC
Q 004806 143 CPLSLELMTDPVI-VASGQTYERAFIKKWIDLGLFVCPKTRQTLA 186 (729)
Q Consensus 143 CpI~~~lm~dPV~-~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~ 186 (729)
||||++.|.+|++ ++|||+||..||.+|++.+ .+||.||.++.
T Consensus 8 C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~i~ 51 (68)
T d1chca_ 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVE 51 (68)
T ss_dssp CSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCC
T ss_pred CccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC-CcCCCCCcchH
Confidence 9999999999866 7999999999999999975 57999999875
|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Not-4 N-terminal RING finger domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=3.8e-09 Score=80.17 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=39.3
Q ss_pred cccCccccccCc----eecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 142 CCPLSLELMTDP----VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 142 ~CpI~~~lm~dP----V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
-||||++-|.++ ++++|||+|++.||.+|+..+..+||.||+++..
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence 599999988543 3468999999999999998776789999999875
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=1e-06 Score=87.19 Aligned_cols=229 Identities=12% Similarity=0.066 Sum_probs=150.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 524 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~ 524 (729)
....|++.|+++++.++..|+..|..+.. ..+++.|+.+|++.++.++..|+.+|..+.........+
T Consensus 20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~- 87 (276)
T d1oyza_ 20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV- 87 (276)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH-
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch-
Confidence 35678999999999999999999987643 246899999999999999999999999886543332222
Q ss_pred hcCCHHHHH-HHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHHH
Q 004806 525 NANAIEPLI-HVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKA 603 (729)
Q Consensus 525 ~~g~I~~Lv-~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~~ 603 (729)
++.++ .++++.++.++..++.+|..+..... ......++.+...+.+.++.++..|+.++..+..
T Consensus 88 ----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~------ 153 (276)
T d1oyza_ 88 ----FNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------ 153 (276)
T ss_dssp ----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred ----HHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch------
Confidence 33333 45677889999999999998864321 1122456777788888888888888888877532
Q ss_pred HHHHcCcHHHHHHhcC-CCHHHHHHHHHHHHHHhCCcc----------------hHH----HH---HhCCcHHHHHHHHc
Q 004806 604 RIVQAGAVKHLVDLMD-PAAGMVDKAVAVLANLATIPD----------------GRV----AI---GQENGIPVLVEVVE 659 (729)
Q Consensus 604 ~lv~~G~V~~Lv~LL~-~~~~v~e~Al~~L~nLa~~~e----------------~r~----~i---~~~g~I~~Lv~lL~ 659 (729)
...++.+..++. .+..+...+..++..+..... .+. ++ ....+++.|+..+.
T Consensus 154 ----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~ 229 (276)
T d1oyza_ 154 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELK 229 (276)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT
T ss_pred ----HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHhC
Confidence 233444444442 222222223322222221110 000 00 12336788888876
Q ss_pred cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC-CHHHHHHHHHHHH
Q 004806 660 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG-TPRAKEKAQALLS 716 (729)
Q Consensus 660 s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg-~~rvr~~A~~lL~ 716 (729)
.. .++..|+.+|..+. + .++++.|..++... +..++..|.+.|+
T Consensus 230 d~--~vr~~a~~aL~~ig--~---------~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 230 KN--TVYDDIIEAAGELG--D---------KTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp SS--SCCHHHHHHHHHHC--C---------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred Ch--HHHHHHHHHHHHcC--C---------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 43 46778888887764 2 24789999888765 5789998888764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=7.3e-07 Score=98.72 Aligned_cols=226 Identities=12% Similarity=0.097 Sum_probs=149.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...++.+.+++.+.++.++..|+..+..+++.-.. .......++.|..++.+++..++..|+.+|..++..-...
T Consensus 163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~-- 237 (588)
T d1b3ua_ 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH--
Confidence 34567777888899999999999999999885321 1223467888899999999999999999998886421111
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccC--cH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIY--HE 600 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~--~e 600 (729)
......++.+..++.+.+..+|..++.+|..++..-. ..+.....++.+..++.+.+..++..|+.+|..++.. ..
T Consensus 238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~ 315 (588)
T d1b3ua_ 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 1123367888889988899999999999998864211 1223346789999999999999999999999887652 23
Q ss_pred HHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHh
Q 004806 601 NKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLC 677 (729)
Q Consensus 601 n~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~ 677 (729)
......-...++.+..++ +.+..++..+..++..++..-. ... .....++.+..++...++.++..++..+..++
T Consensus 316 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~-~~~-~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~ 391 (588)
T d1b3ua_ 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred hhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccc-hhH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 333333455677777776 4555565555554444432110 011 11123455555555555555555555544443
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=6e-07 Score=99.42 Aligned_cols=263 Identities=12% Similarity=0.049 Sum_probs=184.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSA 522 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~ 522 (729)
...++.+...+.+.+..++..++..+..++..-. .. ......++.+..+|.+++++++..++..+..+...-... .
T Consensus 323 ~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~--~~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~-~ 398 (588)
T d1b3ua_ 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILG--KD-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-Q 398 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--HH-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-H
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccc--hh-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchh-h
Confidence 4566777778888888888888777776654211 11 112346889999999999999999888877664321111 1
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhcccCcHHH
Q 004806 523 IANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENK 602 (729)
Q Consensus 523 I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~~~en~ 602 (729)
+ ....++.+..++.+.++.+|..++.++..++..- ..........+.+..++.+....++..|+.+|..|+..-..
T Consensus 399 ~-~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~- 474 (588)
T d1b3ua_ 399 L-SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL--GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK- 474 (588)
T ss_dssp H-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH--CGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-
T ss_pred h-hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc--ChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc-
Confidence 1 2345778889999999999999999998886421 11122234567788889999999999999999998652111
Q ss_pred HHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH
Q 004806 603 ARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS 681 (729)
Q Consensus 603 ~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~ 681 (729)
.......++.+..++ +++...+..++.++..+...- .........++.|++++....+.++..|+.+|..++..-+
T Consensus 475 -~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~--~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~ 551 (588)
T d1b3ua_ 475 -EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC--GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp -HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH--HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred -HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 112344778888887 456667777777777776421 1223344579999999999999999999999999987643
Q ss_pred hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 682 RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 682 ~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
. ...+....+.|..++.+.+..||..|.++|..|.
T Consensus 552 ~---~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~ 586 (588)
T d1b3ua_ 552 N---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp H---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred c---HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 2 1222334677777877888999999999998764
|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: EL5 RING-H2 domain species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.53 E-value=1.8e-08 Score=77.27 Aligned_cols=48 Identities=19% Similarity=0.475 Sum_probs=40.0
Q ss_pred CCCcccccCccccccCc---eec-CCCccccHHHHHHHHhcCCCCCCCCCccC
Q 004806 137 IPSDFCCPLSLELMTDP---VIV-ASGQTYERAFIKKWIDLGLFVCPKTRQTL 185 (729)
Q Consensus 137 ~p~~f~CpI~~~lm~dP---V~~-~~G~ty~r~~I~~~~~~~~~~cP~t~~~l 185 (729)
+-++..||||++-|.+. +.+ +|||.|+..||.+|+... .+||.||+++
T Consensus 2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~-~~CP~CR~~i 53 (55)
T d1iyma_ 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCS
T ss_pred CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhC-CcCCCCCCEe
Confidence 45677899999999763 344 699999999999999874 6799999875
|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Deltex protein 2 RING-H2 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=9.1e-08 Score=84.48 Aligned_cols=52 Identities=10% Similarity=0.250 Sum_probs=42.0
Q ss_pred CCCCcccccCccccccCc------------------eecCCCccccHHHHHHHHhcC----CCCCCCCCccCCC
Q 004806 136 PIPSDFCCPLSLELMTDP------------------VIVASGQTYERAFIKKWIDLG----LFVCPKTRQTLAH 187 (729)
Q Consensus 136 ~~p~~f~CpI~~~lm~dP------------------V~~~~G~ty~r~~I~~~~~~~----~~~cP~t~~~l~~ 187 (729)
..+.+..||||++-|.+| ++++|||.|++.||.+|+... +.+||.||..+..
T Consensus 21 ~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T d1v87a_ 21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence 355677899999988764 357899999999999999853 3479999988744
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=5.8e-06 Score=88.90 Aligned_cols=272 Identities=10% Similarity=0.060 Sum_probs=188.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHh-
Q 004806 448 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANC-GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIAN- 525 (729)
Q Consensus 448 ~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~- 525 (729)
.++..+..++.-....+...+..++.....+....... .....+-.+....+...+.-|+.+|..|...+..|..+..
T Consensus 126 ~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~ 205 (477)
T d1ho8a_ 126 LFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLH 205 (477)
T ss_dssp HHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTT
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHc
Confidence 34444555566666777777787877544433322111 2233444444677888888899999888888888888754
Q ss_pred -cCCHHHHHHHhcC-----------------CCHHHHHHHHHHHHHhccCcchhhhhhcc--CcHHHHHHhhcC-CCHHH
Q 004806 526 -ANAIEPLIHVLQT-----------------GSPEARENAAATLFSLSVIEDNKIKIGRS--GAIGPLVDLLGN-GTPRG 584 (729)
Q Consensus 526 -~g~I~~Lv~lL~s-----------------~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~--g~I~~Lv~LL~~-~~~~v 584 (729)
...+++|+.+|+. ....++++++-++|-||...+....+... +.|+.|+++++. ...++
T Consensus 206 ~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKv 285 (477)
T d1ho8a_ 206 EKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKV 285 (477)
T ss_dssp HHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHH
T ss_pred ccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 3567777777753 12568999999999999988777777665 558999999875 47899
Q ss_pred HHHHHHHHHhcccCc--H----HHHHHHHcCcHHHHHHhcC---CCHHHHHHHHHHH-------HHHhCCcchHH-----
Q 004806 585 KKDAATALFNLSIYH--E----NKARIVQAGAVKHLVDLMD---PAAGMVDKAVAVL-------ANLATIPDGRV----- 643 (729)
Q Consensus 585 ~~~Al~aL~nLs~~~--e----n~~~lv~~G~V~~Lv~LL~---~~~~v~e~Al~~L-------~nLa~~~e~r~----- 643 (729)
.+.++.+|.||+... . ....++..++++.+-.|.. .+.++.+..-.+- ..+++.++...
T Consensus 286 vRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg 365 (477)
T d1ho8a_ 286 SRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSK 365 (477)
T ss_dssp HHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 999999999998642 1 2344666777766555542 4555554322221 22232222222
Q ss_pred -----------HHHh--------C--CcHHHHHHHHc----------cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCC
Q 004806 644 -----------AIGQ--------E--NGIPVLVEVVE----------LGSARGKENAAAALLQLCTNSSRFCSMVLQEGA 692 (729)
Q Consensus 644 -----------~i~~--------~--g~I~~Lv~lL~----------s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~ 692 (729)
.+.. . ..+..|+++|. +.++.+...||.=|..+|++.|..+..+-+.|+
T Consensus 366 ~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~ 445 (477)
T d1ho8a_ 366 LLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG 445 (477)
T ss_dssp CCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH
T ss_pred CCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCc
Confidence 2322 1 13889999996 235677788899999999999988888888999
Q ss_pred HHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 693 VPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 693 v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
=..+..++.+.++.||..|..++.-+-
T Consensus 446 K~~vM~Lm~h~d~~Vr~eAL~avQklm 472 (477)
T d1ho8a_ 446 KADIMELLNHSDSRVKYEALKATQAII 472 (477)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999886553
|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Variant RING domain domain: IE1B protein (ORF K3), N-terminal domain species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]
Probab=98.16 E-value=8.7e-07 Score=68.80 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=42.4
Q ss_pred CCcccccCccccccCceecCC-----CccccHHHHHHHHhc-CCCCCCCCCccCCC
Q 004806 138 PSDFCCPLSLELMTDPVIVAS-----GQTYERAFIKKWIDL-GLFVCPKTRQTLAH 187 (729)
Q Consensus 138 p~~f~CpI~~~lm~dPV~~~~-----G~ty~r~~I~~~~~~-~~~~cP~t~~~l~~ 187 (729)
.+...|+||++-+.+|.+.+| +|.|.+.||.+|+.. +..+||+||+++..
T Consensus 4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~ 59 (60)
T d1vyxa_ 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence 356779999999999988876 499999999999975 55689999998764
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=6.9e-05 Score=73.38 Aligned_cols=204 Identities=10% Similarity=0.016 Sum_probs=131.4
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhh
Q 004806 485 CGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKI 564 (729)
Q Consensus 485 ~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I 564 (729)
....+.|+.+|+++++.++..|+.+|..+.. ..+++.|+.+|++.++.++..|+.+|..+........
T Consensus 18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~-- 85 (276)
T d1oyza_ 18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-- 85 (276)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc--
Confidence 4567789999999999999999999987631 2458999999999999999999999998864322222
Q ss_pred hccCcHHHHHH-hhcCCCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchH
Q 004806 565 GRSGAIGPLVD-LLGNGTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGR 642 (729)
Q Consensus 565 ~~~g~I~~Lv~-LL~~~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r 642 (729)
..++.|.. ++++.++.++..|+.+|.+++...... ....++.+...+ +....++..++.++..+..
T Consensus 86 ---~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~----- 153 (276)
T d1oyza_ 86 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND----- 153 (276)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred ---chHHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-----
Confidence 12344444 467889999999999999986532211 122455666666 4566666666666554321
Q ss_pred HHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHH----------------------HhCCCHHHHHHhh
Q 004806 643 VAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMV----------------------LQEGAVPPLVALS 700 (729)
Q Consensus 643 ~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~v----------------------l~~G~v~~Lv~Ll 700 (729)
...++.+..++...+...+..+..++..+..........+ ....+++.|+..+
T Consensus 154 -----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l 228 (276)
T d1oyza_ 154 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL 228 (276)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred -----HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHh
Confidence 2345555555555555555555555544443332211110 1123677888877
Q ss_pred hCCCHHHHHHHHHHHHHhh
Q 004806 701 QSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 701 ~sg~~rvr~~A~~lL~~L~ 719 (729)
.+. .++..|..+|..+.
T Consensus 229 ~d~--~vr~~a~~aL~~ig 245 (276)
T d1oyza_ 229 KKN--TVYDDIIEAAGELG 245 (276)
T ss_dssp TSS--SCCHHHHHHHHHHC
T ss_pred CCh--HHHHHHHHHHHHcC
Confidence 654 46777777777664
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=5.4e-05 Score=78.98 Aligned_cols=275 Identities=11% Similarity=0.059 Sum_probs=169.4
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCc
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~~~ 518 (729)
...++.|+..+.+. +...+..++..+..++.........-.....++.++..+.+. +..++..|+.++.++.....
T Consensus 126 ~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~ 205 (458)
T d1ibrb_ 126 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 205 (458)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred cchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhh
Confidence 45788888888753 455666777777766653222211111124567777788654 57899999999988864321
Q ss_pred c--HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 004806 519 N--KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNL 595 (729)
Q Consensus 519 ~--k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nL 595 (729)
. ..........+.+..++.+++++++..++.+|..+.... ..-...........+...+.+.+..++..|+..+..+
T Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i 285 (458)
T d1ibrb_ 206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 285 (458)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1 111112234566777788889999999999999886532 1111111223344455667788888998888888877
Q ss_pred ccCcHHH---------------------HHHHHcCcHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCcchHHHHH
Q 004806 596 SIYHENK---------------------ARIVQAGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVAIG 646 (729)
Q Consensus 596 s~~~en~---------------------~~lv~~G~V~~Lv~LL~--------~~~~v~e~Al~~L~nLa~~~e~r~~i~ 646 (729)
+...... ....-...++.+...+. .+..++..+..++..++..-.. .+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~ 363 (458)
T d1ibrb_ 286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV 363 (458)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH
T ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hhh
Confidence 5321111 01111223444555441 1223556666677766642111 011
Q ss_pred hCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 647 QENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 647 ~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
...++.+...+.+.+...++.|+.+|..++.... +..... -...++.|+..+++.++++|..|.++|..+..+
T Consensus 364 -~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 364 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 1235667777788899999999999999986532 211111 134789999999999999999999999877654
|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=9.6e-07 Score=74.09 Aligned_cols=44 Identities=16% Similarity=0.415 Sum_probs=36.9
Q ss_pred ccCccccccCc------------------eecCCCccccHHHHHHHHhcCCCCCCCCCccCCC
Q 004806 143 CPLSLELMTDP------------------VIVASGQTYERAFIKKWIDLGLFVCPKTRQTLAH 187 (729)
Q Consensus 143 CpI~~~lm~dP------------------V~~~~G~ty~r~~I~~~~~~~~~~cP~t~~~l~~ 187 (729)
|+||++-|.+| ++++|||.|...||.+|++.+ .+||.||+++..
T Consensus 24 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 85 (88)
T d3dplr1 24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEF 85 (88)
T ss_dssp CSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCCE
T ss_pred CEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHC-CcCCCCCCcccc
Confidence 89998877763 346899999999999999975 679999998753
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=7.4e-05 Score=86.79 Aligned_cols=273 Identities=12% Similarity=0.048 Sum_probs=164.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--Cc
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSSETKIQENAVTALLNLSIN--DN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~--~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~--~~ 518 (729)
...++.+.+.+.+.++..+..|+.+|..++....+ .+.. ...++.|+.+|.++++.++..|+++|..++.. +.
T Consensus 394 ~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~---~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~ 470 (888)
T d1qbkb_ 394 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ 470 (888)
T ss_dssp HHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHH---HHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSS
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHH---HhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 45667777778888999999999999988764322 2222 25678899999999999999999999988642 22
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI- 597 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~- 597 (729)
.... .-...++.++..+.+.++.++..|+.+|.++.........-.-...++.|+..+..........+..++..++.
T Consensus 471 ~~~~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~ 549 (888)
T d1qbkb_ 471 PPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADS 549 (888)
T ss_dssp CHHH-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhh-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 2211 23467888999999999999999999999987522111110112556677777777666555554444444431
Q ss_pred ------CcHHHHHHH---------------------H----------cCcHH-------HHHHhc---------------
Q 004806 598 ------YHENKARIV---------------------Q----------AGAVK-------HLVDLM--------------- 618 (729)
Q Consensus 598 ------~~en~~~lv---------------------~----------~G~V~-------~Lv~LL--------------- 618 (729)
.+.....++ + .+..+ .++.++
T Consensus 550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 629 (888)
T d1qbkb_ 550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 629 (888)
T ss_dssp HGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 011000000 0 00000 000000
Q ss_pred ---CCCHHHHHHHHHHHHHHhC--CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCH
Q 004806 619 ---DPAAGMVDKAVAVLANLAT--IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAV 693 (729)
Q Consensus 619 ---~~~~~v~e~Al~~L~nLa~--~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v 693 (729)
..+......++.++..++. .......+.....++.+...+...++.+++.|..+|..++...+......+. ..+
T Consensus 630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~ 708 (888)
T d1qbkb_ 630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFM 708 (888)
T ss_dssp TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHH
Confidence 0112223333334444332 1111222333445677778888889999999999999888765532222111 246
Q ss_pred HHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 694 PPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 694 ~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+.|..-+.++...++..|.+++.-+..
T Consensus 709 ~~l~~~L~~~~~~v~~~a~~~ig~ia~ 735 (888)
T d1qbkb_ 709 PILGTNLNPEFISVCNNATWAIGEISI 735 (888)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHHHH
Confidence 677777777778888888888766643
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=7.5e-05 Score=86.74 Aligned_cols=272 Identities=13% Similarity=0.045 Sum_probs=151.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CccH
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DNNK 520 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~--~~~k 520 (729)
...++.|+..+++.++.++..|++.|..++.........-.-...++.|+..+.+.++.+++.|+.+|.++... +...
T Consensus 435 ~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~ 514 (888)
T d1qbkb_ 435 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV 514 (888)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSG
T ss_pred hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 56788999999999999999999999988753211111111236788899999999999999999999998632 1111
Q ss_pred HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC---cchhhhhhccCcHHHH------------------------
Q 004806 521 SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI---EDNKIKIGRSGAIGPL------------------------ 573 (729)
Q Consensus 521 ~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~---~e~k~~I~~~g~I~~L------------------------ 573 (729)
..+ ...++.|+..+.......+..+..++..++.. .-.+..+. ...++.+
T Consensus 515 p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i 591 (888)
T d1qbkb_ 515 PYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDKDLFPLLECLSSV 591 (888)
T ss_dssp GGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH-HHHHHHHHHHHTTSCTTCTTHHHHHHHHHHH
T ss_pred hHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 100 12345556666655555444444444443310 00000000 0011111
Q ss_pred HHhhcCC------------------------------------CHHHHHHHHHHHHhccc--CcHHHHHHHHcCcHHHHH
Q 004806 574 VDLLGNG------------------------------------TPRGKKDAATALFNLSI--YHENKARIVQAGAVKHLV 615 (729)
Q Consensus 574 v~LL~~~------------------------------------~~~v~~~Al~aL~nLs~--~~en~~~lv~~G~V~~Lv 615 (729)
+..+... +......++.++..+.. .......+.....++.+.
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~ 671 (888)
T d1qbkb_ 592 ATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMY 671 (888)
T ss_dssp HHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHH
T ss_pred HHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHH
Confidence 1111111 11222222223332221 111111122234555555
Q ss_pred Hhc-CCCHHHHHHHHHHHHHHhCC-cchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCH
Q 004806 616 DLM-DPAAGMVDKAVAVLANLATI-PDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAV 693 (729)
Q Consensus 616 ~LL-~~~~~v~e~Al~~L~nLa~~-~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v 693 (729)
..+ +.+..+++.|+.+++.|+.. ...-...+ ...++.|++.|......++.+|++++..|+...++...-.+ ..++
T Consensus 672 ~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il 749 (888)
T d1qbkb_ 672 QCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVL 749 (888)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHH
Confidence 656 46678888899999888762 22111111 12456666667777889999999999999876543211111 2367
Q ss_pred HHHHHhhhCCC--HHHHHHHHHHHHHhh
Q 004806 694 PPLVALSQSGT--PRAKEKAQALLSYFR 719 (729)
Q Consensus 694 ~~Lv~Ll~sg~--~rvr~~A~~lL~~L~ 719 (729)
+.|+.+++... ..+++.+..+|..|.
T Consensus 750 ~~L~~il~~~~~~~~v~~n~~~~lgrl~ 777 (888)
T d1qbkb_ 750 HQLVEIINRPNTPKTLLENTAITIGRLG 777 (888)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 88899998754 457788887776553
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=2.3e-05 Score=93.67 Aligned_cols=270 Identities=11% Similarity=0.094 Sum_probs=170.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAI 523 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I 523 (729)
-.|..|++.+.+.+++.|..|+..|...-..+......-.....++.|+.+|.+.+++||..|+.+|..|...-.....
T Consensus 3 ~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~- 81 (1207)
T d1u6gc_ 3 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV- 81 (1207)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred hhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH-
Confidence 3678899999999999999999888754432111000000123688999999999999999999999998754322111
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC----cchhhh--hhccCcHHHHHHhhcC-CCHHHHHHHHHHHHhcc
Q 004806 524 ANANAIEPLIHVLQTGSPEARENAAATLFSLSVI----EDNKIK--IGRSGAIGPLVDLLGN-GTPRGKKDAATALFNLS 596 (729)
Q Consensus 524 ~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~----~e~k~~--I~~~g~I~~Lv~LL~~-~~~~v~~~Al~aL~nLs 596 (729)
...++.|+..+.+++...+..+..+|..+... ...... ......++.|...+.. .+..++..|+.+|..+.
T Consensus 82 --~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~ 159 (1207)
T d1u6gc_ 82 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 159 (1207)
T ss_dssp --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 23567777777777777777777777655321 111110 1112334445544443 46788888888888775
Q ss_pred cC-cHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHc-cCCHHHHHHHHHHH
Q 004806 597 IY-HENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVE-LGSARGKENAAAAL 673 (729)
Q Consensus 597 ~~-~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~-s~s~~~ke~A~~aL 673 (729)
.. ...-.. ....+++.|+..+ ++...++..|+.+|..|+..-... .-...+..++..+. ..+...+..++.+|
T Consensus 160 ~~~g~~l~~-~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l 235 (1207)
T d1u6gc_ 160 SRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCI 235 (1207)
T ss_dssp HHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred HHhhHhhHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 41 110000 0122455566666 567888999999999998743221 11234677776664 34555666778888
Q ss_pred HHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhcC
Q 004806 674 LQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNQ 721 (729)
Q Consensus 674 ~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~~ 721 (729)
..++...+...... -..+++.+...+...++.+++.|..++..+...
T Consensus 236 ~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~ 282 (1207)
T d1u6gc_ 236 AAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 282 (1207)
T ss_dssp HHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHcchhhHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 88887654311100 135788999999999999999999888877554
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00019 Score=85.46 Aligned_cols=233 Identities=13% Similarity=0.107 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--Cc-
Q 004806 442 IETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSIN--DN- 518 (729)
Q Consensus 442 ~~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~--~~- 518 (729)
....++.|++.|.+.++++|..|+.+|..++..-++... ...++.|+..+.+++..++..+..+|..+... ..
T Consensus 43 ~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~ 118 (1207)
T d1u6gc_ 43 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 118 (1207)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccccc
Confidence 356899999999999999999999999999876443221 24577888888788888888888887766321 11
Q ss_pred ---cHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 004806 519 ---NKSAIANANAIEPLIHVLQT-GSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFN 594 (729)
Q Consensus 519 ---~k~~I~~~g~I~~Lv~lL~s-~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~n 594 (729)
.-........++.+...+.. .+..++..++.+|..+......-..-....+++.|+..|.+....+++.|+.+|..
T Consensus 119 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~ 198 (1207)
T d1u6gc_ 119 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 198 (1207)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 01111112234444444443 45788999998888876522211111112567788888889999999999999999
Q ss_pred cccCcHHHHHHHHcCcHHHHHHhc--CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHH
Q 004806 595 LSIYHENKARIVQAGAVKHLVDLM--DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVELGSARGKENAAAA 672 (729)
Q Consensus 595 Ls~~~en~~~lv~~G~V~~Lv~LL--~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~a 672 (729)
|+..-... .-...++.++..+ +.....+..++.+|..|+.....+-.-.-...++.++..+...++.+++.|+.+
T Consensus 199 l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~ 275 (1207)
T d1u6gc_ 199 LVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQA 275 (1207)
T ss_dssp HTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH
T ss_pred HHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 87632211 1133566666655 233333444566666665422111000113468899999999999999999999
Q ss_pred HHHHhhCCH
Q 004806 673 LLQLCTNSS 681 (729)
Q Consensus 673 L~nL~~~~~ 681 (729)
+..++...+
T Consensus 276 l~~l~~~~~ 284 (1207)
T d1u6gc_ 276 FESFVRRCP 284 (1207)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHHhCh
Confidence 988876543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.64 E-value=0.00052 Score=77.16 Aligned_cols=266 Identities=12% Similarity=0.089 Sum_probs=163.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCcc--
Q 004806 444 TQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSINDNN-- 519 (729)
Q Consensus 444 ~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~~~~-- 519 (729)
..+..|...+.+++++++.+|-..|..+...+. .+++..|+..+.+. +..++..|+..|.|.......
T Consensus 5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~ 76 (861)
T d2bpta1 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVK 76 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence 344445555678899999999999988876432 25677888888653 577888888888876432211
Q ss_pred HHH----HH-------hcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC-CHHHHHH
Q 004806 520 KSA----IA-------NANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG-TPRGKKD 587 (729)
Q Consensus 520 k~~----I~-------~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~-~~~v~~~ 587 (729)
... .. ....-..++..|.+.+..++..++.++..++..+-... .....++.|+..+.+. +...+..
T Consensus 77 ~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~--~wpeli~~L~~~~~s~~~~~~~~~ 154 (861)
T d2bpta1 77 TQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG--AWPELMKIMVDNTGAEQPENVKRA 154 (861)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT--CCHHHHHHHHHHTSTTSCHHHHHH
T ss_pred hhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC--chHHHHHHHHHHhcCCCcHHHHHH
Confidence 000 00 01123456777888889999999999988865321110 0125677888888765 4567778
Q ss_pred HHHHHHhcccCcHHHHHHHHcC---cHHHHHHhc---CCCHHHHHHHHHHHHHHhCCcchHH--HHHhCCcHHHHHHHHc
Q 004806 588 AATALFNLSIYHENKARIVQAG---AVKHLVDLM---DPAAGMVDKAVAVLANLATIPDGRV--AIGQENGIPVLVEVVE 659 (729)
Q Consensus 588 Al~aL~nLs~~~en~~~lv~~G---~V~~Lv~LL---~~~~~v~e~Al~~L~nLa~~~e~r~--~i~~~g~I~~Lv~lL~ 659 (729)
|+.+|..++..-.......-.. .+..++..+ +.+..++..++.+|.++...-.... .......++.|...+.
T Consensus 155 al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (861)
T d2bpta1 155 SLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ 234 (861)
T ss_dssp HHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhc
Confidence 8889988874321111111111 223333333 2457788889999988876332211 1111224677778888
Q ss_pred cCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhh
Q 004806 660 LGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFR 719 (729)
Q Consensus 660 s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~ 719 (729)
..++.++..|+.+|..++...++.....+..-....+.....+.++.++..|..++..+.
T Consensus 235 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~ 294 (861)
T d2bpta1 235 AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC 294 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 899999999999999998765432222222212223344445667888888888776553
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.55 E-value=0.00064 Score=72.66 Aligned_cols=224 Identities=14% Similarity=0.150 Sum_probs=152.9
Q ss_pred cCCCHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcC-----------------CCHHHHHHHHHHHHHhh
Q 004806 454 KSTSLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHS-----------------SETKIQENAVTALLNLS 514 (729)
Q Consensus 454 ~s~~~evq~~Al~~L~~La~~s~~nr~~I~~--~GaI~~Lv~LL~s-----------------~d~~v~e~Al~aL~nLs 514 (729)
.+.+.+.+.-|+.++..+.+ .+..|..+-. ...++.|+.+|.. .+.+++.+++-+|+-|+
T Consensus 175 ~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS 253 (477)
T d1ho8a_ 175 NIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT 253 (477)
T ss_dssp CTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence 56777888888889998888 4577877744 3556777776642 13578999999999999
Q ss_pred cCCccHHHHHhc--CCHHHHHHHhcCC-CHHHHHHHHHHHHHhccCcc--h----hhhhhccCcHHHHHHhhcCC---CH
Q 004806 515 INDNNKSAIANA--NAIEPLIHVLQTG-SPEARENAAATLFSLSVIED--N----KIKIGRSGAIGPLVDLLGNG---TP 582 (729)
Q Consensus 515 ~~~~~k~~I~~~--g~I~~Lv~lL~s~-~~e~r~~Aa~aL~nLS~~~e--~----k~~I~~~g~I~~Lv~LL~~~---~~ 582 (729)
.++.....+.+. +.|+.|+.+++.. -..+..-++++|.|+..... + ...++..++++ ++..|... ++
T Consensus 254 F~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~-~l~~L~~r~~~De 332 (477)
T d1ho8a_ 254 FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDE 332 (477)
T ss_dssp TSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSH
T ss_pred cCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhH-HHHHHhcCCCCCH
Confidence 987777766665 4588899998754 47788889999999986422 2 22234445554 45555432 55
Q ss_pred HHHHHHHH-------HHHhcccCcHHH----------------HHHHH----------cCcHHHHHHhcC----------
Q 004806 583 RGKKDAAT-------ALFNLSIYHENK----------------ARIVQ----------AGAVKHLVDLMD---------- 619 (729)
Q Consensus 583 ~v~~~Al~-------aL~nLs~~~en~----------------~~lv~----------~G~V~~Lv~LL~---------- 619 (729)
++..+--. -+..++.+++.. ..+.. ..++..|+++|+
T Consensus 333 dl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~ 412 (477)
T d1ho8a_ 333 ELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNA 412 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhccccccccc
Confidence 54332111 222344332222 22322 236788899883
Q ss_pred -CCHHHHHHHHHHHHHHhC-CcchHHHHHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhC
Q 004806 620 -PAAGMVDKAVAVLANLAT-IPDGRVAIGQENGIPVLVEVVELGSARGKENAAAALLQLCTN 679 (729)
Q Consensus 620 -~~~~v~e~Al~~L~nLa~-~~e~r~~i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~ 679 (729)
.++.+..-||.=++.++. .+.||..+-+.|+=..++++|.+.++.++.+|..++..+..+
T Consensus 413 s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 474 (477)
T d1ho8a_ 413 KQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 474 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 123345557777888888 889999998889988999999999999999999999877654
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.00092 Score=69.21 Aligned_cols=255 Identities=14% Similarity=0.125 Sum_probs=153.1
Q ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccChhhHH-HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Cc
Q 004806 443 ETQVRKLVEDLKS--TSLDTQREATAELRLLAKHNMDNRM-VIANCGAINILVDMLHSSETKIQENAVTALLNLSIN-DN 518 (729)
Q Consensus 443 ~~~V~~Lv~~L~s--~~~evq~~Al~~L~~La~~s~~nr~-~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~-~~ 518 (729)
...++.++..+.+ .+.+++..|+..+..+......... ........+.|..++.+.+++++..++.+|..+... ..
T Consensus 170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 249 (458)
T d1ibrb_ 170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249 (458)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 4677888888875 3578899999999888764332211 112224566777788889999999999999888532 11
Q ss_pred cHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchh-----------------hhhh----ccCcHHHHHHhh
Q 004806 519 NKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNK-----------------IKIG----RSGAIGPLVDLL 577 (729)
Q Consensus 519 ~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k-----------------~~I~----~~g~I~~Lv~LL 577 (729)
.-...........+...+.+.+.+++..|+..+..++...... .... ....++.+...+
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 329 (458)
T d1ibrb_ 250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 329 (458)
T ss_dssp GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhh
Confidence 1000011122333455667778888888888888775321100 0000 012233444443
Q ss_pred cC-------CCHHHHHHHHHHHHhcccCcHHHHHHHHcCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcchHH-HHHhC
Q 004806 578 GN-------GTPRGKKDAATALFNLSIYHENKARIVQAGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPDGRV-AIGQE 648 (729)
Q Consensus 578 ~~-------~~~~v~~~Al~aL~nLs~~~en~~~lv~~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e~r~-~i~~~ 648 (729)
.. .+..++..|..++..++...... +. ..+++.+...+ +++...++.|+.+|+.++....... .-.-.
T Consensus 330 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~ 406 (458)
T d1ibrb_ 330 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI 406 (458)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTT
T ss_pred hcchhhhccccccHHHHHHHHHHHHHHhccHh--hh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHH
Confidence 32 12346777777777776521110 11 12445565666 4678889999999999986432211 00123
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCC
Q 004806 649 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSG 703 (729)
Q Consensus 649 g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg 703 (729)
..++.|+..+.+.++.++..|+++|..++..-+.. ....-.+++|+..+-.|
T Consensus 407 ~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~---~~~~~~l~~ll~~ll~g 458 (458)
T d1ibrb_ 407 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQCLIEG 458 (458)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG---CCSTTTHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc---cchhhHHHHHHHHHhCc
Confidence 46899999999999999999999999988643311 11123466666655443
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.38 E-value=0.00013 Score=62.63 Aligned_cols=88 Identities=26% Similarity=0.296 Sum_probs=75.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 565 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~ 565 (729)
.+++.|+.+|.++++.++..|+.+|.++. ..+.++.|+.+|.+.++.+|..|+.+|..+.
T Consensus 22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~---------- 81 (111)
T d1te4a_ 22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG---------- 81 (111)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHHHhhhccchhHHHHHHHHHHHHhC----------
Confidence 46788999999999999999999997663 1246889999999999999999999998763
Q ss_pred ccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 566 RSGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 566 ~~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
..++++.|..+++++++.++..|+.+|.
T Consensus 82 ~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 82 GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3567899999999999999999998874
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.008 Score=67.45 Aligned_cols=272 Identities=11% Similarity=0.066 Sum_probs=163.7
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcC
Q 004806 443 ETQVRKLVEDLKST--SLDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLHSS--ETKIQENAVTALLNLSIN 516 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~--~~evq~~Al~~L~~La~~s~~nr~~I~~--~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~ 516 (729)
.+.++.|++.+.+. +...+..++..|..++..-. ...+.. ...++.++..+.+. +..++..|+.++.++...
T Consensus 127 peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~--~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~ 204 (876)
T d1qgra_ 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHH
Confidence 46789999988754 45667778888888876321 122222 24677788888654 577889999888776432
Q ss_pred CccH--HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 517 DNNK--SAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 517 ~~~k--~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
-... ......-.+..+...+..++++++..++.+|..+... .+.-...........+...+.+....+...++..+.
T Consensus 205 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 284 (876)
T d1qgra_ 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1110 0011112356677777888899999999999888652 222112222344555666777788888888887777
Q ss_pred hcccCcHHH---------------------HHHHHcCcHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCcchHHH
Q 004806 594 NLSIYHENK---------------------ARIVQAGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVA 644 (729)
Q Consensus 594 nLs~~~en~---------------------~~lv~~G~V~~Lv~LL~--------~~~~v~e~Al~~L~nLa~~~e~r~~ 644 (729)
.++...... ........++.+...+. ....+...|..+|..++......
T Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-- 362 (876)
T d1qgra_ 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-- 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh--
Confidence 665421100 01111223344444431 11235555666666555421110
Q ss_pred HHhCCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCH-hhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 645 IGQENGIPVLVEVVELGSARGKENAAAALLQLCTNSS-RFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 645 i~~~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~-~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
+. ...++.+...+.+.+...++.++.++..+..... ....... ...++.+...+.+.++.++..|.+++..+..
T Consensus 363 ~~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T d1qgra_ 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hh-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHH
Confidence 00 1123455555667888999999999988876543 2222222 2368889999999999999999998877654
|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: UbcM4-interacting protein 4 (KIAA0161) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=7.2e-05 Score=62.84 Aligned_cols=44 Identities=23% Similarity=0.461 Sum_probs=33.6
Q ss_pred ccccCcccccc--C-ceecCCCccccHHHHHHHHhc----CC---CCCCCCCcc
Q 004806 141 FCCPLSLELMT--D-PVIVASGQTYERAFIKKWIDL----GL---FVCPKTRQT 184 (729)
Q Consensus 141 f~CpI~~~lm~--d-PV~~~~G~ty~r~~I~~~~~~----~~---~~cP~t~~~ 184 (729)
-.||||++-+. + |++.+|||.||+.||..|+.. +. -+||.|+.+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~ 59 (94)
T d1wima_ 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP 59 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence 46999998875 3 556689999999999999963 22 249987543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.08 E-value=0.0083 Score=66.93 Aligned_cols=273 Identities=12% Similarity=0.087 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhhccChhhHHHHHh--cCcHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLKSTS-LDTQREATAELRLLAKHNMDNRMVIAN--CGAINILVDMLH--SSETKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~-~evq~~Al~~L~~La~~s~~nr~~I~~--~GaI~~Lv~LL~--s~d~~v~e~Al~aL~nLs~~~ 517 (729)
...++.|++.+.+.+ ...+..|+..|..++.........+.. ...+..++..+. ..+..++..|+.+|.++...-
T Consensus 133 peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 212 (861)
T d2bpta1 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 578899999998654 456677888888887643221111111 022333333333 346889999999998875431
Q ss_pred c-c-HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCc-chhhhhhccCcHHH-HHHhhcCCCHHHHHHHHHHHH
Q 004806 518 N-N-KSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIE-DNKIKIGRSGAIGP-LVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 518 ~-~-k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~-e~k~~I~~~g~I~~-Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
. + .........++.|...+..++++++..+..+|..+.... +.-..... ..+.. +....++.++.++..++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~~v~~~~~~~l~ 291 (861)
T d2bpta1 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEFWS 291 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 1 1 111112235667788889999999999999999886521 11111111 22333 344556778889998888887
Q ss_pred hcccCcHHHHH-HH----------------HcCcHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCcchHHHHHhC
Q 004806 594 NLSIYHENKAR-IV----------------QAGAVKHLVDLMD--------PAAGMVDKAVAVLANLATIPDGRVAIGQE 648 (729)
Q Consensus 594 nLs~~~en~~~-lv----------------~~G~V~~Lv~LL~--------~~~~v~e~Al~~L~nLa~~~e~r~~i~~~ 648 (729)
.++........ .. -...++.+...+. .+......+..+|..++...... +. .
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~-~ 368 (861)
T d2bpta1 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH--IL-E 368 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG--GH-H
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchh--hh-h
Confidence 77643221111 10 1123455555541 12244455555555554321110 00 0
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHHhhCCHh-hHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHhhc
Q 004806 649 NGIPVLVEVVELGSARGKENAAAALLQLCTNSSR-FCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRN 720 (729)
Q Consensus 649 g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~~~-~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L~~ 720 (729)
...+.+...+.+.+...++.|+.++..++..... .....+ ...++.|+..+.+.++.+|..|.+++..+..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T d2bpta1 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence 0123344455667889999999999988876532 222222 2368889999999999999999998877654
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.04 E-value=0.00035 Score=59.69 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 004806 445 QVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIA 524 (729)
Q Consensus 445 ~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~ 524 (729)
.++.|++.|++.++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~---------- 81 (111)
T d1te4a_ 23 AFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---------- 81 (111)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccchhHHHHHHHHHHHHhC----------
Confidence 36778899999999999999999876532 246899999999999999999999998873
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHH
Q 004806 525 NANAIEPLIHVLQTGSPEARENAAATLF 552 (729)
Q Consensus 525 ~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~ 552 (729)
....++.|..+++++++.++..|+.+|.
T Consensus 82 ~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 82 GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1346888899999999999999988764
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.006 Score=68.54 Aligned_cols=260 Identities=14% Similarity=0.079 Sum_probs=163.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcC-Ccc-HHHH
Q 004806 448 KLVEDLKSTSLDTQREATAELRLLAKHNMDNRMVIANCGAINILVDMLHSS--ETKIQENAVTALLNLSIN-DNN-KSAI 523 (729)
Q Consensus 448 ~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~~I~~~GaI~~Lv~LL~s~--d~~v~e~Al~aL~nLs~~-~~~-k~~I 523 (729)
.+++..-+++.+++.+|-..|..+...+. .|++..|+..+.+. +..++..|+-.|.|.... ... +...
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~ 76 (876)
T d1qgra_ 5 TILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (876)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence 44555557888999999999988876431 25777888888654 577889999889886432 111 1110
Q ss_pred ----------HhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcCC--CHHHHHHHHHH
Q 004806 524 ----------ANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGNG--TPRGKKDAATA 591 (729)
Q Consensus 524 ----------~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~~--~~~v~~~Al~a 591 (729)
........|+..|.+.+. .+..++.++..++..+-... ...+.++.|+..+.++ ...++..++.+
T Consensus 77 ~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~--~Wpeli~~L~~~l~~~~~~~~~~~~~l~~ 153 (876)
T d1qgra_ 77 QQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEA 153 (876)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcc--ccHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 011233456777766553 34456677777654321110 1247889999988765 46778888999
Q ss_pred HHhccc-CcHHHHHHHHcCcHHHHHHhcC---CCHHHHHHHHHHHHHHhCCcchHHH--HHhCCcHHHHHHHHccCCHHH
Q 004806 592 LFNLSI-YHENKARIVQAGAVKHLVDLMD---PAAGMVDKAVAVLANLATIPDGRVA--IGQENGIPVLVEVVELGSARG 665 (729)
Q Consensus 592 L~nLs~-~~en~~~lv~~G~V~~Lv~LL~---~~~~v~e~Al~~L~nLa~~~e~r~~--i~~~g~I~~Lv~lL~s~s~~~ 665 (729)
|..++. .......-.-...++.++..+. .+..++..++.++.++......... ....-.++.+...+...++.+
T Consensus 154 l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v 233 (876)
T d1qgra_ 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 233 (876)
T ss_dssp HHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 988865 2211111111345667777662 4567888888888877653322111 111123566677778889999
Q ss_pred HHHHHHHHHHHhhCCHhhHHHHHhCCCHHHHHHhhhCCCHHHHHHHHHHHHHh
Q 004806 666 KENAAAALLQLCTNSSRFCSMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYF 718 (729)
Q Consensus 666 ke~A~~aL~nL~~~~~~~~~~vl~~G~v~~Lv~Ll~sg~~rvr~~A~~lL~~L 718 (729)
+..|+.+|..++...++.....+.....+.+........+.++..|...+..+
T Consensus 234 ~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 286 (876)
T d1qgra_ 234 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 99999999999987765544444455566666777777788887777665544
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.54 E-value=0.013 Score=56.88 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=44.1
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhh
Q 004806 486 GAINILVDMLHSSETKIQENAVTALLNLSINDNNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIG 565 (729)
Q Consensus 486 GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~ 565 (729)
-.+..|..+++++++.|+..|+..|. .+.|..++..++.+++..++.. |+
T Consensus 66 a~~~~L~~Ll~D~d~~VR~~AA~~Lp-----------------~~~L~~L~~D~d~~VR~~aa~~---l~---------- 115 (233)
T d1lrva_ 66 SPVEALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALMFDEDREVRITVADR---LP---------- 115 (233)
T ss_dssp SCGGGGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTTTCSCHHHHHHHHHH---SC----------
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHcC-----------------HHHHHHHhcCCChhHHHHHHhc---cC----------
Confidence 34667888999999999988876431 1345566666667776665542 21
Q ss_pred ccCcHHHHHHhhcCCCHHHHHHHHH
Q 004806 566 RSGAIGPLVDLLGNGTPRGKKDAAT 590 (729)
Q Consensus 566 ~~g~I~~Lv~LL~~~~~~v~~~Al~ 590 (729)
.+.|..++.+++..++..++.
T Consensus 116 ----~~~L~~Ll~D~d~~VR~~aa~ 136 (233)
T d1lrva_ 116 ----LEQLEQMAADRDYLVRAYVVQ 136 (233)
T ss_dssp ----TGGGGGGTTCSSHHHHHHHHH
T ss_pred ----HHHHHHHhcCCCHHHHHHHHh
Confidence 234555566666666655544
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.39 Score=47.93 Aligned_cols=196 Identities=14% Similarity=0.141 Sum_probs=148.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccChhhHH----HHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 004806 443 ETQVRKLVEDLKSTSLDTQREATAELRLLAKHNMDNRM----VIANC-GAINILVDMLHSSETKIQENAVTALLNLSIND 517 (729)
Q Consensus 443 ~~~V~~Lv~~L~s~~~evq~~Al~~L~~La~~s~~nr~----~I~~~-GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~ 517 (729)
.+.+..|+..|..-+-+.+..++.....+-+.....|. .+... ..+..|+.-. +++++.-.+-..|.....++
T Consensus 68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik~e 145 (330)
T d1upka_ 68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHE 145 (330)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSH
T ss_pred hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHhhH
Confidence 45678888888888888899999888888876655553 33332 4444444443 35666677777788888888
Q ss_pred ccHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHHhccC-cchhhhhhcc---CcHHHHHHhhcCCCHHHHHHHHHHHH
Q 004806 518 NNKSAIANANAIEPLIHVLQTGSPEARENAAATLFSLSVI-EDNKIKIGRS---GAIGPLVDLLGNGTPRGKKDAATALF 593 (729)
Q Consensus 518 ~~k~~I~~~g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~-~e~k~~I~~~---g~I~~Lv~LL~~~~~~v~~~Al~aL~ 593 (729)
.-...|.....+..+.+....++-++...|..++..|-.. .......... ..+.....||.+++--.++.++..|.
T Consensus 146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg 225 (330)
T d1upka_ 146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 225 (330)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 8888888888999999999999999999999998877553 2222222222 56777788999999999999999999
Q ss_pred hcccCcHHHHHHHH----cCcHHHHHHhc-CCCHHHHHHHHHHHHHHhCCcc
Q 004806 594 NLSIYHENKARIVQ----AGAVKHLVDLM-DPAAGMVDKAVAVLANLATIPD 640 (729)
Q Consensus 594 nLs~~~en~~~lv~----~G~V~~Lv~LL-~~~~~v~e~Al~~L~nLa~~~e 640 (729)
.|-.+..|...|.. ..-+..++.+| +....+.-.|..++.-...++.
T Consensus 226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpn 277 (330)
T d1upka_ 226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 277 (330)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCC
Confidence 99988888877654 44677788888 5678888999999998877554
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=4.4 Score=40.03 Aligned_cols=197 Identities=14% Similarity=0.079 Sum_probs=145.3
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-ccH----HHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 004806 482 IANCGAINILVDMLHSSETKIQENAVTALLNLSIND-NNK----SAIANA-NAIEPLIHVLQTGSPEARENAAATLFSLS 555 (729)
Q Consensus 482 I~~~GaI~~Lv~LL~s~d~~v~e~Al~aL~nLs~~~-~~k----~~I~~~-g~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS 555 (729)
+...+.+..|+..|..=+.+.+..++.+..++.... ..+ ..+... ..+..|+.--. ++++-..+...|....
T Consensus 65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREci 142 (330)
T d1upka_ 65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECI 142 (330)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHHH
Confidence 334578889999998889999999999999986542 222 233322 33344444332 4556667777788877
Q ss_pred cCcchhhhhhccCcHHHHHHhhcCCCHHHHHHHHHHHHhccc-CcHHHHHHHHcC---cHHHHHHhcCC-CHHHHHHHHH
Q 004806 556 VIEDNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSI-YHENKARIVQAG---AVKHLVDLMDP-AAGMVDKAVA 630 (729)
Q Consensus 556 ~~~e~k~~I~~~g~I~~Lv~LL~~~~~~v~~~Al~aL~nLs~-~~en~~~lv~~G---~V~~Lv~LL~~-~~~v~e~Al~ 630 (729)
.++.....|.....+..+.+++..++=++..+|..++..|-. ++.....++..+ .+...-.||.+ +--++..++.
T Consensus 143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK 222 (330)
T d1upka_ 143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 222 (330)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 788888888888889999999999999999999999998765 444555555533 45556667754 4445688999
Q ss_pred HHHHHhCCcchHHHHHh----CCcHHHHHHHHccCCHHHHHHHHHHHHHHhhCC
Q 004806 631 VLANLATIPDGRVAIGQ----ENGIPVLVEVVELGSARGKENAAAALLQLCTNS 680 (729)
Q Consensus 631 ~L~nLa~~~e~r~~i~~----~g~I~~Lv~lL~s~s~~~ke~A~~aL~nL~~~~ 680 (729)
+|+.|-....+...+.. ..-+..++.+|++.+..++-.|.-+.--..++.
T Consensus 223 LLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp 276 (330)
T d1upka_ 223 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 276 (330)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence 99999988887766643 224889999999999999999999988777765
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=89.89 E-value=0.11 Score=50.18 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHH
Q 004806 446 VRKLVEDLKSTSLDTQREATAE 467 (729)
Q Consensus 446 V~~Lv~~L~s~~~evq~~Al~~ 467 (729)
+..|+.+++..+++++..|+..
T Consensus 68 ~~~L~~Ll~D~d~~VR~~AA~~ 89 (233)
T d1lrva_ 68 VEALTPLIRDSDEVVRRAVAYR 89 (233)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHH
Confidence 3445667777888888777654
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.16 E-value=13 Score=36.64 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=57.4
Q ss_pred hcCcHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCCccHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHH
Q 004806 484 NCGAINILVDMLHS-----------SETKIQENAVTALLNLSINDNNKSAIAN-ANAIEPLIHVLQTGSPEARENAAATL 551 (729)
Q Consensus 484 ~~GaI~~Lv~LL~s-----------~d~~v~e~Al~aL~nLs~~~~~k~~I~~-~g~I~~Lv~lL~s~~~e~r~~Aa~aL 551 (729)
..+|+..|+.+|.. .+...+..++.+|..|..+..+...+.. ..++..|+..|.+..+.++..|+.+|
T Consensus 43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL 122 (343)
T d2bnxa1 43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 122 (343)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence 35677778877731 1356788899999988776666555554 58899999999999999999999999
Q ss_pred HHhccC
Q 004806 552 FSLSVI 557 (729)
Q Consensus 552 ~nLS~~ 557 (729)
..++..
T Consensus 123 ~~lc~~ 128 (343)
T d2bnxa1 123 SALCIL 128 (343)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 988764
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=81.72 E-value=3.8 Score=40.78 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=77.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhccCcchhhhhhccCcHHHHHHhhcC----CCHHHHHHHHHHHHhccc----Cc
Q 004806 528 AIEPLIHVLQTGSPEARENAAATLFSLSVIEDNKIKIGRSGAIGPLVDLLGN----GTPRGKKDAATALFNLSI----YH 599 (729)
Q Consensus 528 ~I~~Lv~lL~s~~~e~r~~Aa~aL~nLS~~~e~k~~I~~~g~I~~Lv~LL~~----~~~~v~~~Al~aL~nLs~----~~ 599 (729)
++..+.+++.++..... .|...|..|......- ...+..+.++++. .++.++..+..++.+|.. ..
T Consensus 89 a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt-----~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~ 162 (336)
T d1lsha1 89 ALLFLKRTLASEQLTSA-EATQIVASTLSNQQAT-----RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT 162 (336)
T ss_dssp HHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCC-----HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCC-----HHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCC
Confidence 55667777776653322 3445555554322211 1345666777765 367777777777777643 21
Q ss_pred HHHHHHHHcCcHHHHHHhc-----CCCHHHHHHHHHHHHHHhCCcchHHHHHhCCcHHHHHHHHcc-------CCHHHHH
Q 004806 600 ENKARIVQAGAVKHLVDLM-----DPAAGMVDKAVAVLANLATIPDGRVAIGQENGIPVLVEVVEL-------GSARGKE 667 (729)
Q Consensus 600 en~~~lv~~G~V~~Lv~LL-----~~~~~v~e~Al~~L~nLa~~~e~r~~i~~~g~I~~Lv~lL~s-------~s~~~ke 667 (729)
..+ ....++.+.+.+ ..+...+..++.+|+|+.. + ..++.|..++.. .+..++.
T Consensus 163 ~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-p---------~~i~~l~~~l~~~~~~~~~~~~~vR~ 228 (336)
T d1lsha1 163 VSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-P---------NSIKKIQRFLPGQGKSLDEYSTRVQA 228 (336)
T ss_dssp SSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred CCC----cHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC-H---------hHHHHHHHHhcccccccccccHHHHH
Confidence 111 122445555554 2445555667888888763 2 245666666642 2567888
Q ss_pred HHHHHHHHHhhCCH
Q 004806 668 NAAAALLQLCTNSS 681 (729)
Q Consensus 668 ~A~~aL~nL~~~~~ 681 (729)
.|+++|..+....+
T Consensus 229 aAi~Alr~~~~~~p 242 (336)
T d1lsha1 229 EAIMALRNIAKRDP 242 (336)
T ss_dssp HHHHTTTTGGGTCH
T ss_pred HHHHHHHHhhhcCc
Confidence 88888888777655
|