Citrus Sinensis ID: 004809
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.957 | 0.922 | 0.438 | 1e-154 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.962 | 0.905 | 0.396 | 1e-138 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.899 | 0.897 | 0.365 | 1e-113 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.912 | 0.887 | 0.363 | 1e-111 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.617 | 0.558 | 0.259 | 1e-22 | |
| P16271 | 1902 | PI-type proteinase OS=Lac | N/A | no | 0.663 | 0.254 | 0.238 | 8e-11 | |
| P15293 | 1902 | PII-type proteinase OS=La | N/A | no | 0.661 | 0.253 | 0.239 | 5e-10 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.657 | 0.251 | 0.236 | 2e-09 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.480 | 0.299 | 0.254 | 3e-09 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.480 | 0.299 | 0.254 | 3e-09 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 326/743 (43%), Positives = 441/743 (59%), Gaps = 45/743 (6%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTP 60
M S MP +F WY ++L+S+S S++LLYTY + ++GFS LT
Sbjct: 36 MAKSQMPSSFDLHSNWYDSSLRSIS-------------DSAELLYTYENAIHGFSTRLTQ 82
Query: 61 AELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSG-AWPVSKFGKDIIIGVVDTGV 119
E ++L + PG IS + + + HTT + FLGL+ + +P + D+++GV+DTGV
Sbjct: 83 EEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGSYSDVVVGVLDTGV 142
Query: 120 WPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTI--TIA 177
WPES+SY+D G IPS WKG CE+GT F +SLCN+KLIGARFF +G + I +
Sbjct: 143 WPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKE 202
Query: 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSD 237
SPRD +GHGTHTSSTAAGS VE AS GYA GTA G AP ARVA+YK W G F+SD
Sbjct: 203 SRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGGCFSSD 262
Query: 238 IIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL 297
I+AAID+AI D V+VLSMSLG D Y D VAI FAA+E+ I VS SAGN GP +L
Sbjct: 263 ILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSL 322
Query: 298 HNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLID--FPIVFMDECLNLA 355
N PW+ TV AGT+DR+ A LGNG TG+SL+ G +L D P ++ N
Sbjct: 323 SNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGE-ALPDKLLPFIYAGNASNAT 381
Query: 356 E----------LKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD--FDGLEFFLQ 403
+KV KIV+C D+ + Q ++ A+ G+ +++ +G E
Sbjct: 382 NGNLCMTGTLIPEKVKGKIVMC-DRGINARVQKGDVVKAAGGVGMILANTAANGEELVAD 440
Query: 404 SS-FPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPF 462
+ PA + K GDI++ Y+ + N TA+I T +G KP+P VA++SSRGP+ P
Sbjct: 441 AHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPN 500
Query: 463 VLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHP 522
+LKPD++APG +ILAAW + S FN+ SGTSM+CP +G+AALL+ HP
Sbjct: 501 ILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHP 560
Query: 523 EWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDAT 582
EWSPAAIRSA+MTT+ T + DI KP+TP GAGH++P A +PGLIYD T
Sbjct: 561 EWSPAAIRSALMTTAYKTYKDGKPLLDIA-TGKPSTPFDHGAGHVSPTTATNPGLIYDLT 619
Query: 583 TEDYVSLLCALNLTMKRIQTIT-RSYSVNCST--SSLDLNYPSFIAFFNANESKSVQEFQ 639
TEDY+ LCALN T +I++++ R+Y+ + S S DLNYPSF + ++
Sbjct: 620 TEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVDG---VGAYKYT 676
Query: 640 RTVTNVGEGVSTYTASVT-PLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVV 698
RTVT+VG G TY+ VT G SV+P L FK K+SY + +
Sbjct: 677 RTVTSVG-GAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFT-VDSSKPSGSN 734
Query: 699 AFCYLSWIETGGKHVVKSPIVVT 721
+F + W + GKHVV SP+ ++
Sbjct: 735 SFGSIEWSD--GKHVVGSPVAIS 755
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 494 bits (1271), Expect = e-138, Method: Compositional matrix adjust.
Identities = 298/752 (39%), Positives = 419/752 (55%), Gaps = 50/752 (6%)
Query: 4 SAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTPAEL 63
S K F + W+ + LQ VE SS+LLY+Y + GF+A LT +E
Sbjct: 36 SETAKTFASKFDWHLSFLQEAVLGVEEEEEE----PSSRLLYSYGSAIEGFAAQLTESEA 91
Query: 64 EALKSSPGYISSIRDLPVKPHTTHSSQFLGLNP--KSGAWPVSKFGKDIIIGVVDTGVWP 121
E L+ SP ++ D ++ TT+S +FLGL+ SG W S+FG+ IIGV+DTGVWP
Sbjct: 92 EILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGVWSKSRFGQGTIIGVLDTGVWP 151
Query: 122 ESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKN-----PTITI 176
ES S++D GM IP +WKG C+ G F+SS CN+KLIGARFF +G N P +
Sbjct: 152 ESPSFDDTGMPSIPRKWKGICQEGESFSSSSCNRKLIGARFFIRGHRVANSPEESPNMPR 211
Query: 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTS 236
S RD+ GHGTHT+ST GS V A+ G G A G AP A +A+YK W G ++S
Sbjct: 212 EYISARDSTGHGTHTASTVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKVCWFNGCYSS 271
Query: 237 DIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT 296
DI+AAID AI D VDVLS+SLG + LY+D +AI TF A+E+ I V +AGN GP +
Sbjct: 272 DILAAIDVAIQDKVDVLSLSLGGFPIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESS 331
Query: 297 LHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPG---NSSLIDFPIVFM----- 348
+ N PWV T+ AGT+DR A + L NG + G SLYPG ++ + ++++
Sbjct: 332 VANTAPWVSTIGAGTLDRRFPAVVRLANGKLLYGESLYPGKGIKNAGREVEVIYVTGGDK 391
Query: 349 --DECLNLA-ELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFI--------SDFDG 397
+ CL + +++ K+V+C + S + + ++ A GGV + + D
Sbjct: 392 GSEFCLRGSLPREEIRGKMVICDRGVNGRSEKGEAVKEA---GGVAMILANTEINQEEDS 448
Query: 398 LEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPS 457
++ L PA + +LK Y+ A I F T +G AP VA +S+RGPS
Sbjct: 449 IDVHL---LPATLIGYTESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPS 505
Query: 458 ISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL 517
++ P +LKPD++APG +I+AAWP NL + NF + SGTSM+CP +GI AL+
Sbjct: 506 LANPSILKPDMIAPGVNIIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALI 565
Query: 518 RGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGL 577
R A+P WSPAAI+SA+MTT+D D IK D NKPA A+GAGH+NP KA++PGL
Sbjct: 566 RSAYPNWSPAAIKSALMTTADLYDRQGKAIK---DGNKPAGVFAIGAGHVNPQKAINPGL 622
Query: 578 IYDATTEDYVSLLCALNLTMKRIQTITRSYSVNCS-----TSSLDLNYPSFIAFFNANES 632
+Y+ DY++ LC L T I IT +V+C+ LNYPS F
Sbjct: 623 VYNIQPVDYITYLCTLGFTRSDILAITHK-NVSCNGILRKNPGFSLNYPSIAVIF--KRG 679
Query: 633 KSVQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKL--RIEGPN 690
K+ + R VTNVG S Y+ +V +G V+P +L FK SY++ ++ N
Sbjct: 680 KTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKN 739
Query: 691 QMDEETVVAFCYLSWIETGG-KHVVKSPIVVT 721
+ + A L+W+ + V+SPI VT
Sbjct: 740 RGGKVASFAQGQLTWVNSHNLMQRVRSPISVT 771
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 269/736 (36%), Positives = 386/736 (52%), Gaps = 80/736 (10%)
Query: 14 HGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTPAELEALKSSPGYI 73
H + A L+ V G+ A ++ L+TY NGF+ LT E E + S G +
Sbjct: 49 HLHHRAMLEQVVGSTFAPESV---------LHTYKRSFNGFAVKLTEEEAEKIASMEGVV 99
Query: 74 SSIRDLPVKPHTTHSSQFLGLN---PKSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGG 130
S + + HTT S FLG P+ S+ +I++GV+DTG+WPES S++D G
Sbjct: 100 SVFLNEMNELHTTRSWDFLGFPLTVPRR-----SQVESNIVVGVLDTGIWPESPSFDDEG 154
Query: 131 MTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTH 190
+ P +WKG CE+ F CN+K+IGAR ++ G P +N PRD NGHGTH
Sbjct: 155 FSPPPPKWKGTCETSNNFR---CNRKIIGARSYHIG----RPISPGDVNGPRDTNGHGTH 207
Query: 191 TSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGV 250
T+STAAG V +A+ +G +GTA G PLAR+A YK WN+G +DI+AA D AI DGV
Sbjct: 208 TASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGV 267
Query: 251 DVLSMSL-GLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAA 309
D++S+S+ G + + D +AI +F A+E+ I S SAGN GP T + PW+++VAA
Sbjct: 268 DIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAA 327
Query: 310 GTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQD 369
TMDR+ + +GNG + G+S+ ++ +P+V + N K + C D
Sbjct: 328 STMDRKFVTQVQIGNGQSFQGVSINTFDNQY--YPLVSGRDIPNTGFDKSTSR---FCTD 382
Query: 370 K--NDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDY----- 422
K N +L + AS F DG V M S T D Y
Sbjct: 383 KSVNPNLLKGKIVVCEASFGPHEFFKSLDGAA--------GVLMTSNTRDYADSYPLPSS 434
Query: 423 IKIENNATATIQ------------FQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMA 470
+ N+ AT++ F+ T + AP V S+SSRGP+ + V+KPD+
Sbjct: 435 VLDPNDLLATLRYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISG 494
Query: 471 PGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIR 530
PG ILAAWPS V + FN+ SGTSM+CP GIA ++ +P WSPAAI+
Sbjct: 495 PGVEILAAWPSVAPVGGIRRN---TLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIK 551
Query: 531 SAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLL 590
SA+MTT+ + + P A G+GH+NP KA+ PGL+YDA DYV L
Sbjct: 552 SALMTTASPMNARFN----------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFL 601
Query: 591 CALNLTMKRIQTITRSYSVNCSTSS---LDLNYPSFIAFFNANESKSVQEFQRTVTNVGE 647
C + ++ IT YS S ++ DLNYPSF + +++ + Q F RT+T+V
Sbjct: 602 CGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFN-QYFNRTLTSVAP 660
Query: 648 GVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIE 707
STY A ++ +G SV+P+ L+F G ++S+ L + G + V L W +
Sbjct: 661 QASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG----SIKGFVVSASLVWSD 716
Query: 708 TGGKHVVKSPIVVTSL 723
G H V+SPI +TSL
Sbjct: 717 --GVHYVRSPITITSL 730
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 261/719 (36%), Positives = 387/719 (53%), Gaps = 54/719 (7%)
Query: 27 NVEANTNIFNNISSSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPHTT 86
N+ ++ NI + + +Y+Y+ N F+A L+P E + + +S R+ K HTT
Sbjct: 58 NLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTT 117
Query: 87 HSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGT 146
S F+GL P + + K +D+IIGV+DTG+ P+SES+ D G+ P++WKG C G
Sbjct: 118 KSWDFVGL-PLTAKRHL-KAERDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSC--GP 173
Query: 147 QFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYF 206
N + CN K+IGA++F P + SP D +GHGTHTSST AG V AS +
Sbjct: 174 YKNFTGCNNKIIGAKYFKHD--GNVPAGEV--RSPIDIDGHGTHTSSTVAGVLVANASLY 229
Query: 207 GYAIGTALGTAPLARVAMYKALW-NEGSFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLY 265
G A GTA G P AR+AMYK W G DI+A + AI DGV+++S+S+G D
Sbjct: 230 GIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISIGGPIADYS 289
Query: 266 EDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNG 325
D +++ +F A+ K I SAGN GP GT+ N PW++TVAA +DR + + LGNG
Sbjct: 290 SDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNG 349
Query: 326 NTVTGLSLYPGNSSLIDFPIV-------------FMDECLNLA-ELKKVGQKIVVCQDKN 371
+ +G+ + + +P+V C + + + KKV K++VC+
Sbjct: 350 KSFSGMGISMFSPKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGG 409
Query: 372 DSLSNQVDNIQNASVSGGVFISD--FDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNA 429
+ + + + A G + +SD D + F+ PA +NS GDI+ YI +A
Sbjct: 410 GGVESTIKSYGGA---GAIIVSDQYLDNAQIFMA---PATSVNSSVGDIIYRYINSTRSA 463
Query: 430 TATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTN 489
+A IQ KT T PAP VAS+SSRGP+ +LKPD+ APG ILAA+ +++ +
Sbjct: 464 SAVIQ--KTRQVTIPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLD 521
Query: 490 SKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDS-TDNTNSDIK 548
FS F + SGTSMACP AG+AA ++ HP+W+PAAI+SAI+T++ + N D +
Sbjct: 522 GDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRRVNKDAE 581
Query: 549 DIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQTITRSYS 608
A G G INP +A PGL+YD YV LC + + + S
Sbjct: 582 -----------FAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRS 630
Query: 609 VNCST-----SSLDLNYPSFIAFFNANESKSVQEFQRTVTNVGEGVSTYTASVTPLKGFN 663
V+CS+ LNYP+ + ++ ++ F+R VTNVG S YTA+V KG
Sbjct: 631 VSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVE 690
Query: 664 FSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVVKSPIVVTS 722
+V+P L+F K+S+K+ ++ QM +V+ L W +H V+SPIV+ S
Sbjct: 691 ITVEPQSLSFSKASQKRSFKVVVKA-KQMTPGKIVS-GLLVW--KSPRHSVRSPIVIYS 745
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 145/559 (25%), Positives = 246/559 (44%), Gaps = 109/559 (19%)
Query: 29 EANTNIFNNISSSKLLYTYSHVLNGFSASLTPAELEALKSSPGYIS-------------- 74
+A + + K+ Y V +GFS L E+ L + +
Sbjct: 88 KAKNKAIKAVKNGKVNREYEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKD 147
Query: 75 ---SIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGM 131
+I + V P S+ ++G N AW + GK I + ++DTGV YN +
Sbjct: 148 KDVTISEDAVSPQMDDSAPYIGAND---AWDLGYTGKGIKVAIIDTGV-----EYNHPDL 199
Query: 132 TEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPR-DANGHGTH 190
+ ++KG F + + K + PT PR +A HGTH
Sbjct: 200 KKNFGQYKG-----YDFVDNDYDPK-------------ETPT-----GDPRGEATDHGTH 236
Query: 191 TSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSD-IIAAIDQAIIDG 249
+ T A A GT G AP A + Y+ L GS T++ +IA +++A+ DG
Sbjct: 237 VAGTVA------------ANGTIKGVAPDATLLAYRVLGPGGSGTTENVIAGVERAVQDG 284
Query: 250 VDVLSMSLG--LDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTV 307
DV+++SLG L+ D + A A+ + + TS GN GP NG W TV
Sbjct: 285 ADVMNLSLGNSLNNPDW---ATSTALDWAMSEGVVAVTSNGNSGP------NG--W--TV 331
Query: 308 AAGTMDRE---LGAT--------LTLGNGNT--VTGLSLYPGNSSLIDFPIVFMDECLNL 354
+ RE +GAT +T G+ ++ V G + +L + + ++ +
Sbjct: 332 GSPGTSREAISVGATQLPLNEYAVTFGSYSSAKVMGYNKEDDVKALNNKEVELVEAGIGE 391
Query: 355 A---ELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDG-LEFFLQS-SFPAV 409
A E K + K+ V + + + ++ DN + A G V ++ G +E + S P +
Sbjct: 392 AKDFEGKDLTGKVAVVKRGSIAFVDKADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTI 451
Query: 410 FMNSKTGDILKDYIKI-ENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDV 468
++ + G+ L +K E T + K LG + VA +SSRGP + +++KPD+
Sbjct: 452 KLSLEDGEKLVSALKAGETKTTFKLTVSKA-LGEQ----VADFSSRGPVMDT-WMIKPDI 505
Query: 469 MAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAA 528
APG +I++ P T+ + + GTSMA P AG A+++ A P+WS
Sbjct: 506 SAPGVNIVSTIP-------THDPDHPYGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQ 558
Query: 529 IRSAIMTTSDSTDNTNSDI 547
I++AIM T+ + +++ ++
Sbjct: 559 IKAAIMNTAVTLKDSDGEV 577
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 142/595 (23%), Positives = 233/595 (39%), Gaps = 111/595 (18%)
Query: 46 TYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSK 105
+Y +V+NGFS + ++ LK G + P ++ + W K
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKANSMANVQ---AVWSNYK 205
Query: 106 F-GKDIIIGVVDTGVWPESESYN-----DGGMTEIP-SRWKGECESGTQFNSSLCNKKLI 158
+ G+ ++ V+D+G+ P + D +T+ ++ + G FNS +
Sbjct: 206 YKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYFNSKVP----- 260
Query: 159 GARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSST--AAGSYVERASYFGYAIGTALGT 216
+ N TIT + HG H + A G+ + A + +G
Sbjct: 261 ----YGFNYADNNDTITDDTVDEQ----HGMHVAGIIGANGTGDDPAK-------SVVGV 305
Query: 217 APLARVAMYKALWNEGSF----TSDIIAAIDQAIIDGVDVLSMSLGLD-GVDLYEDPVAI 271
AP A++ K N + +S +++AI+ + G DVL+MSLG D G EDP
Sbjct: 306 APEAQLLAMKVFTNSDTSATTGSSTLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELA 365
Query: 272 ATFAAIEKNIFVSTSAGNQG-----------PFIGTLHN---GIPWV----MTVAAGTMD 313
A A E SAGN G + G N G P TVA+
Sbjct: 366 AVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTSRGATTVASAENT 425
Query: 314 RELGATLTLGNGNTVTGLSLYPGNSSLI--DFP--------IVFMDECLNLAE------L 357
+ +T+ +G TGL L PG L DF V D NL++
Sbjct: 426 DVITQAVTITDG---TGLQLGPGTIQLSSNDFTGSFDQKKFYVVKDASGNLSKGALADYT 482
Query: 358 KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDG-----LEFFLQSSFPAVFMN 412
KI + + S ++ Q A +G + +++ DG L ++FP ++
Sbjct: 483 ADAKGKIAIVKRGELSFDDKQKYAQAAGAAGLIIVNN-DGTATPVTSMALTTTFPTFGLS 541
Query: 413 SKTGDILKDYIKIENNATATIQFQKTELGTKP--APSVASYSSRGPSISCPFVLKPDVMA 470
S TG L D++ + + ++ T + + ++ ++S GP + F KPD+ A
Sbjct: 542 SVTGQKLVDWVTAHPDDSLGVKIALTLVPNQKYTEDKMSDFTSYGPVSNLSF--KPDITA 599
Query: 471 PGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGA---------- 520
PG +I + +N ++N SGTSMA P AG ALL+ A
Sbjct: 600 PGGNIWSTQNNN----------GYTNM---SGTSMASPFIAGSQALLKQALNNKNNPFYA 646
Query: 521 -HPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574
+ + A+ + T NT I DI +N +P GAG ++ A+D
Sbjct: 647 YYKQLKGTALTDFLKTVE---MNTAQPINDINYNNVIVSPRRQGAGLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 143/597 (23%), Positives = 234/597 (39%), Gaps = 115/597 (19%)
Query: 46 TYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSK 105
+Y +V+NGFS + ++ LK G + P ++ + W K
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKANSMANV---QAVWSNYK 205
Query: 106 F-GKDIIIGVVDTGVWPESESYN-----DGGMTEIP-SRWKGECESGTQFNSSLCNKKLI 158
+ G+ ++ V+D+G+ P + D +T+ ++ + G FNS +
Sbjct: 206 YKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYFNSKVP----- 260
Query: 159 GARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSST--AAGSYVERASYFGYAIGTALGT 216
+ N TIT + HG H + A G+ + A + +G
Sbjct: 261 ----YGFNYADNNDTITDDTVDEQ----HGMHVAGIIGANGTGDDPAK-------SVVGV 305
Query: 217 APLARVAMYKALWNE------GSFTSDIIAAIDQAIIDGVDVLSMSLGLD-GVDLYEDPV 269
AP A++ K N GS T +++AI+ + G DVL+MSLG D G EDP
Sbjct: 306 APEAQLLAMKVFTNSDTSATTGSAT--LVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPE 363
Query: 270 AIATFAAIEKNIFVSTSAGNQG-----------PFIGTLHN---GIPWV----MTVAAGT 311
A A E SAGN G + G N G P TVA+
Sbjct: 364 LAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTSRGATTVASAE 423
Query: 312 MDRELGATLTLGNGNTVTGLSLYPGNSSLI--DFP--------IVFMDECLNLAELK--- 358
+ +T+ +G TGL L P L DF V D NL++ K
Sbjct: 424 NTDVITQAVTITDG---TGLQLGPETIQLSSNDFTGSFDQKKFYVVKDASGNLSKGKVAD 480
Query: 359 ---KVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDG-----LEFFLQSSFPAVF 410
KI + + + +++ Q A +G + +++ DG L ++FP
Sbjct: 481 YTADAKGKIAIVKRGELTFADKQKYAQAAGAAGLIIVNN-DGTATPVTSMALTTTFPTFG 539
Query: 411 MNSKTGDILKDYIKIENNATATIQFQKTELGTKP--APSVASYSSRGPSISCPFVLKPDV 468
++S TG L D++ + + ++ T + + ++ ++S GP + F KPD+
Sbjct: 540 LSSVTGQKLVDWVAAHPDDSLGVKIALTLVPNQKYTEDKMSDFTSYGPVSNLSF--KPDI 597
Query: 469 MAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGA-------- 520
APG +I + +N ++N SGTSMA P AG ALL+ A
Sbjct: 598 TAPGGNIWSTQNNN----------GYTNM---SGTSMASPFIAGSQALLKQALNNKNNPF 644
Query: 521 ---HPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574
+ + A+ + T NT I DI +N +P GAG ++ A+D
Sbjct: 645 YAYYKQLKGTALTDFLKTVE---MNTAQPINDINYNNVIVSPRRQGAGLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 142/600 (23%), Positives = 227/600 (37%), Gaps = 121/600 (20%)
Query: 46 TYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSK 105
+Y +V+NGFS + ++ LK G + P ++ + W K
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKANSMANVQ---AVWSNYK 205
Query: 106 F-GKDIIIGVVDTGVWPESESYN-----DGGMTEIP-SRWKGECESGTQFNSSLCNKKLI 158
+ G+ ++ V+DTG+ P + D +T+ ++ + G F S +
Sbjct: 206 YKGEGTVVSVIDTGIDPTHKDMRLSDDKDVKLTKYDVEKFTDTAKHGRYFTSKVP----- 260
Query: 159 GARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSST--AAGSYVERASYFGYAIGTALGT 216
+ N TIT + HG H + A G+ + + +G
Sbjct: 261 ----YGFNYADNNDTITDDTVDEQ----HGMHVAGIIGANGTGDDPTK-------SVVGV 305
Query: 217 APLARVAMYKALWNE------GSFTSDIIAAIDQAIIDGVDVLSMSLGLD-GVDLYEDPV 269
AP A++ K N GS T +++AI+ + G DVL+MSLG D G EDP
Sbjct: 306 APEAQLLAMKVFTNSDTSATTGSAT--LVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPE 363
Query: 270 AIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVT 329
A A E SAGN GT + V G D E+ T G T
Sbjct: 364 IAAVQNANESGTAAVISAGNS----GTSGSATQGVNKDYYGLQDNEMVGTPGTSRGATTV 419
Query: 330 GLSLYPGNSSLIDFPIVFMD--------ECLNLAELKKVG----QKIVVCQDKNDSLS-- 375
+ N+ +I + D E + L+ G +K V +D + LS
Sbjct: 420 ASAE---NTDVISQAVTITDGKDLQLGPETIQLSSNDFTGSFDQKKFYVVKDASGDLSKG 476
Query: 376 ---------------------NQVDNIQNASVSG--GVFISDFDG-----LEFFLQSSFP 407
N D + A +G G+ I + DG L ++FP
Sbjct: 477 AAADYTADAKGKIAIVKRGELNFADKQKYAQAAGAAGLIIVNNDGTATPLTSIRLTTTFP 536
Query: 408 AVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKP--APSVASYSSRGPSISCPFVLK 465
++SKTG L D++ + + ++ T L + ++ ++S GP + F K
Sbjct: 537 TFGLSSKTGQKLVDWVTAHPDDSLGVKIALTLLPNQKYTEDKMSDFTSYGPVSNLSF--K 594
Query: 466 PDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGA----- 520
PD+ APG +I + +N ++N SGTSMA P AG ALL+ A
Sbjct: 595 PDITAPGGNIWSTQNNN----------GYTNM---SGTSMASPFIAGSQALLKQALNNKN 641
Query: 521 ------HPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574
+ + A+ + T NT I DI +N +P GAG ++ A+D
Sbjct: 642 NPFYADYKQLKGTALTDFLKTVE---MNTAQPINDINYNNVIVSPRRQGAGLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 108/424 (25%), Positives = 171/424 (40%), Gaps = 74/424 (17%)
Query: 187 HGTHTSSTAAGSYVERASYFGYAIGTALGTAPL--ARVAMYKALWNEGSFTSDIIAAIDQ 244
HGTH S +G+ + Y + A+ A L RV + L + + AI
Sbjct: 195 HGTHVSGILSGN-APSETKEPYRLEGAMPEAQLLLMRVEIVNGL---ADYARNYAQAIRD 250
Query: 245 AIIDGVDVLSMSLG---LDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLH--- 298
A+ G V++MS G L +L D A A K + + TSAGN F G
Sbjct: 251 AVNLGAKVINMSFGNAALAYANL-PDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPL 309
Query: 299 --------NGIPW----VMTVAAGTMDRELGATLTLGNGNT------VTGLSLYPGNSSL 340
G P +TVA+ + D++L T T+ + V + + N +
Sbjct: 310 ADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKA- 368
Query: 341 IDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEF 400
+ + + + K V KI + + + +++ N + A G V I D F
Sbjct: 369 --YDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVG-VLIYDNQDKGF 425
Query: 401 FLQ----SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTE--LGTKPAPSVASYSSR 454
++ PA F++ K G +LKD N+ TI F T L T ++ +SS
Sbjct: 426 PIELPNVDQMPAAFISRKDGLLLKD------NSKKTITFNATPKVLPTASGTKLSRFSSW 479
Query: 455 GPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIA 514
G ++ +KPD+ APG IL++ +N + SGTSM+ P AGI
Sbjct: 480 G--LTADGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIM 524
Query: 515 ALLRGAHPEWSPAAIRSAIMTTSDSTDNTN----SDIKDIGDDNKPA--TPIAMGAGHIN 568
LL+ + P MT S+ D S + D+++ A +P GAG ++
Sbjct: 525 GLLQKQYETQYPD------MTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVD 578
Query: 569 PDKA 572
KA
Sbjct: 579 AKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 108/424 (25%), Positives = 171/424 (40%), Gaps = 74/424 (17%)
Query: 187 HGTHTSSTAAGSYVERASYFGYAIGTALGTAPL--ARVAMYKALWNEGSFTSDIIAAIDQ 244
HGTH S +G+ + Y + A+ A L RV + L + + AI
Sbjct: 195 HGTHVSGILSGN-APSETKEPYRLEGAMPEAQLLLMRVEIVNGL---ADYARNYAQAIRD 250
Query: 245 AIIDGVDVLSMSLG---LDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLH--- 298
A+ G V++MS G L +L D A A K + + TSAGN F G
Sbjct: 251 AVNLGAKVINMSFGNAALAYANL-PDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPL 309
Query: 299 --------NGIPW----VMTVAAGTMDRELGATLTLGNGNT------VTGLSLYPGNSSL 340
G P +TVA+ + D++L T T+ + V + + N +
Sbjct: 310 ADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKA- 368
Query: 341 IDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEF 400
+ + + + K V KI + + + +++ N + A G V I D F
Sbjct: 369 --YDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVG-VLIYDNQDKGF 425
Query: 401 FLQ----SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTE--LGTKPAPSVASYSSR 454
++ PA F++ K G +LKD N+ TI F T L T ++ +SS
Sbjct: 426 PIELPNVDQMPAAFISRKDGLLLKD------NSKKTITFNATPKVLPTASGTKLSRFSSW 479
Query: 455 GPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIA 514
G ++ +KPD+ APG IL++ +N + SGTSM+ P AGI
Sbjct: 480 G--LTADGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIM 524
Query: 515 ALLRGAHPEWSPAAIRSAIMTTSDSTDNTN----SDIKDIGDDNKPA--TPIAMGAGHIN 568
LL+ + P MT S+ D S + D+++ A +P GAG ++
Sbjct: 525 GLLQKQYETQYPD------MTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVD 578
Query: 569 PDKA 572
KA
Sbjct: 579 AKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| 225458649 | 762 | PREDICTED: subtilisin-like protease [Vit | 0.989 | 0.946 | 0.689 | 0.0 | |
| 224137566 | 775 | predicted protein [Populus trichocarpa] | 0.995 | 0.936 | 0.657 | 0.0 | |
| 253740260 | 763 | subtilisin-like protease preproenzyme [N | 0.993 | 0.948 | 0.647 | 0.0 | |
| 224137570 | 743 | predicted protein [Populus trichocarpa] | 0.993 | 0.974 | 0.656 | 0.0 | |
| 118487593 | 778 | unknown [Populus trichocarpa] | 0.993 | 0.930 | 0.656 | 0.0 | |
| 255538260 | 768 | Cucumisin precursor, putative [Ricinus c | 0.990 | 0.940 | 0.654 | 0.0 | |
| 357512611 | 765 | Subtilisin-like protease [Medicago trunc | 0.989 | 0.942 | 0.637 | 0.0 | |
| 356559732 | 750 | PREDICTED: subtilisin-like protease-like | 0.975 | 0.948 | 0.634 | 0.0 | |
| 356560237 | 753 | PREDICTED: subtilisin-like protease-like | 0.979 | 0.948 | 0.658 | 0.0 | |
| 356522478 | 752 | PREDICTED: subtilisin-like protease-like | 0.978 | 0.948 | 0.634 | 0.0 |
| >gi|225458649|ref|XP_002282833.1| PREDICTED: subtilisin-like protease [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/727 (68%), Positives = 589/727 (81%), Gaps = 6/727 (0%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTP 60
MDLSAMPKAF G H WY ATL SVS N A N +++ SSKL+Y+Y++V++GFSA L+P
Sbjct: 33 MDLSAMPKAFSGHHSWYMATLASVSDNTAATANPYSSSYSSKLIYSYTNVIHGFSAILSP 92
Query: 61 AELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVW 120
+ELEALKS PGYISS DLPVK TTHS++FLGLN SGAWP+S +GKD+IIG+VDTG+W
Sbjct: 93 SELEALKSFPGYISSFPDLPVKADTTHSAKFLGLNSNSGAWPMSNYGKDVIIGLVDTGIW 152
Query: 121 PESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNS 180
PESES+ND GMTEIPSRWKG CESGTQFNSS+CNKKLIGARFFNKGL+AK+P ++I+MNS
Sbjct: 153 PESESFNDDGMTEIPSRWKGACESGTQFNSSMCNKKLIGARFFNKGLIAKHPNVSISMNS 212
Query: 181 PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIA 240
RD +GHGTHTS+TAAG+YVE ASYFGY GTA G AP ARVAMYKALW+ G+ SDIIA
Sbjct: 213 TRDTDGHGTHTSTTAAGNYVEGASYFGYGSGTASGMAPRARVAMYKALWDVGAVASDIIA 272
Query: 241 AIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNG 300
AIDQAIIDGVDV+S+SLGLDGV LYEDP+AIATFAA+EK+IFV+TSAGN+GPF+GTLHNG
Sbjct: 273 AIDQAIIDGVDVMSLSLGLDGVLLYEDPIAIATFAALEKDIFVATSAGNEGPFLGTLHNG 332
Query: 301 IPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKV 360
IPWV+TVAA TMDR+ +TLGNG +V G SLYP NSS PIVFM C +L ELKKV
Sbjct: 333 IPWVLTVAASTMDRQFSGIVTLGNGVSVIGSSLYPANSSFSQIPIVFMGSCEDLTELKKV 392
Query: 361 GQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILK 420
G KIVVCQD+NDSLS QVDN A V+GGVFI+D+ +EFF+QSSFPA F+N + G ++
Sbjct: 393 GFKIVVCQDQNDSLSIQVDNANTARVAGGVFITDYPDIEFFMQSSFPATFVNPENGKVVM 452
Query: 421 DYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWP 480
DYIK + A+I+F KT LG K AP +A+YSSRGPS SCP VLKPD+ APG ILA+WP
Sbjct: 453 DYIKTSSEPKASIEFSKTILGAKRAPRMATYSSRGPSPSCPVVLKPDLTAPGALILASWP 512
Query: 481 SNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDST 540
V+ NS+L +S FNL SGTSMACP AAG+ ALL+GAHPEWSPAAIRSA+MTTSDS
Sbjct: 513 KINPVADVNSRLLYSEFNLLSGTSMACPHAAGVGALLKGAHPEWSPAAIRSAMMTTSDSL 572
Query: 541 DNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRI 600
DNT + IK IGDDN+PA+P+AMG+GHINP+KALDPG IYD ED+++LLCALN + K+I
Sbjct: 573 DNTLNPIKGIGDDNQPASPLAMGSGHINPNKALDPGFIYDVNLEDHINLLCALNYSTKQI 632
Query: 601 QTITRSYSVNCSTSSLDLNYPSFIAFFNANESKS----VQEFQRTVTNVGEGVSTYTASV 656
Q ITRS S CS SLDLNYPSFIA F+AN+S+S VQEF+RTVTNVGE +STY A +
Sbjct: 633 QIITRSSSYTCSDPSLDLNYPSFIASFDANDSRSDSKTVQEFRRTVTNVGEAMSTYNAKL 692
Query: 657 TPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVVKS 716
T + GF SV PDKL FK KY K SYKLRIEGP+ M E VAF LSW++ KHVV+S
Sbjct: 693 TGMDGFQVSVVPDKLVFKDKYQKLSYKLRIEGPSLMKE--TVAFGSLSWVDVEAKHVVRS 750
Query: 717 PIVVTSL 723
PIV T L
Sbjct: 751 PIVATRL 757
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137566|ref|XP_002327158.1| predicted protein [Populus trichocarpa] gi|222835473|gb|EEE73908.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/741 (65%), Positives = 577/741 (77%), Gaps = 15/741 (2%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNN---ISSSKLLYTYSHVLNGFSAS 57
MDLS MPK+F GQH WY +TL SVS +++T + +SSKLLY+Y+HV+NGFSAS
Sbjct: 36 MDLSVMPKSFSGQHHWYLSTLASVSDVADSSTARASEATLTASSKLLYSYTHVVNGFSAS 95
Query: 58 LTPAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDT 117
LTP+ELEALK+SPGYISSI+DLPVK TTHS ++LGL P+S AW S +G IIIG+VDT
Sbjct: 96 LTPSELEALKTSPGYISSIKDLPVKHDTTHSPKYLGLTPQSPAWKASNYGDGIIIGLVDT 155
Query: 118 GVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177
G WPESESYND GM EIP WKGECESGTQFNS +CNKKLIGARFFNKGL+AK P ITI+
Sbjct: 156 GAWPESESYNDHGMPEIPKTWKGECESGTQFNSLMCNKKLIGARFFNKGLIAKYPNITIS 215
Query: 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSD 237
MNS RD GHGTHTS+TAAG++VE ASYFGYA GTA G AP A VAMYKALW+EGS+T+D
Sbjct: 216 MNSTRDTEGHGTHTSTTAAGNFVEGASYFGYAKGTASGVAPRAHVAMYKALWDEGSYTTD 275
Query: 238 IIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL 297
+IAAIDQAI DGVDVLSMSLGLDG+ L EDP+A+ATFAAIEKNIFVSTSAGN+GPF TL
Sbjct: 276 LIAAIDQAISDGVDVLSMSLGLDGLPLNEDPIALATFAAIEKNIFVSTSAGNEGPFRETL 335
Query: 298 HNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAEL 357
HNGIPWV+TVAAGT+DR A LTLGNG ++TG S Y G+SS D PIVFMD+C + EL
Sbjct: 336 HNGIPWVLTVAAGTLDRGFDAVLTLGNGISITGSSFYLGSSSFSDVPIVFMDDCHTMREL 395
Query: 358 KKVGQKIVVCQ---DKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSK 414
K+G KIVVC+ D ND LS+QV+N+ +A+V+ GVFI++F E F+ + FP V ++ K
Sbjct: 396 IKIGPKIVVCEGAFDSND-LSDQVENVSSANVTAGVFITNFTDTEEFIGNGFPVVIVSLK 454
Query: 415 TGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDS 474
G + DYIK N+ A+ +F+KT+LG +PAP + SYSSRGPS SCP V+KPD+MAPG
Sbjct: 455 DGKTIIDYIKNSNSPQASAEFRKTDLGIEPAPRLTSYSSRGPSTSCPLVMKPDIMAPGSL 514
Query: 475 ILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIM 534
ILAAWP N+AV NS+ FSNFN+ SGTSMACP AAG+AALLR AHP+WSPAA+RSA++
Sbjct: 515 ILAAWPQNIAVDSNNSQPMFSNFNILSGTSMACPHAAGVAALLRKAHPDWSPAAMRSAMI 574
Query: 535 TTSDSTDNTNSDIKDIGDDNK--PATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCA 592
TT+D+ DNT IKDIG N+ PATP+ MGAG +NP+KALDPGLIYD + DYV LLCA
Sbjct: 575 TTADTMDNTMEPIKDIGFGNRINPATPLDMGAGQVNPNKALDPGLIYDVNSTDYVRLLCA 634
Query: 593 LNLTMKRIQTITRSYSVNCSTSSLDLNYPSFIAFFNANESKS----VQEFQRTVTNVGEG 648
N T K+IQ ITRS S++CS S DLNYPSFIA+FN +S S V+EF RTVTNVGEG
Sbjct: 635 TNFTEKQIQVITRSSSIDCSNPSSDLNYPSFIAYFNDKKSPSNLTIVREFHRTVTNVGEG 694
Query: 649 VSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIET 708
YTASVTP+ G +V PDKL FK KY K SYKL IEGP +DE V F L+W +
Sbjct: 695 TCIYTASVTPMSGLKINVIPDKLEFKTKYEKLSYKLTIEGPALLDE--TVTFGSLNWADA 752
Query: 709 GGKHVVKSPIVVTSLGTEAPS 729
GGKHVV+SPI TSL E S
Sbjct: 753 GGKHVVRSPIAATSLSPELSS 773
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|253740260|gb|ACT34764.1| subtilisin-like protease preproenzyme [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 957 bits (2473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/731 (64%), Positives = 580/731 (79%), Gaps = 7/731 (0%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANT-NIFNNISSSKLLYTYSHVLNGFSASLT 59
MDLSAMP AF WY TL SVS + T + N++SSSK++Y Y++ ++GFSASL+
Sbjct: 33 MDLSAMPTAFSSHQNWYLTTLASVSDSSSLGTASNRNSLSSSKIVYAYTNAIHGFSASLS 92
Query: 60 PAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGV 119
+ELE +K+SPGY+SS +D+ VK TTH+SQFLGLN SG WP S +GKD+I+G+VDTG+
Sbjct: 93 SSELEVIKNSPGYLSSTKDMTVKSDTTHTSQFLGLNSNSGVWPKSDYGKDVIVGLVDTGI 152
Query: 120 WPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMN 179
WPES+SY D GMTE+PSRWKGECESGTQFNSSLCNKKLIGAR+FNKGL+A NP ITI MN
Sbjct: 153 WPESKSYTDNGMTEVPSRWKGECESGTQFNSSLCNKKLIGARYFNKGLIATNPNITILMN 212
Query: 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDII 239
S RD +GHGTHTSSTAAGS+VE SYFGYA G A G AP A VAMYKALW+EG+ SDI+
Sbjct: 213 SARDTDGHGTHTSSTAAGSHVESVSYFGYAPGAATGMAPKAHVAMYKALWDEGTMLSDIL 272
Query: 240 AAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHN 299
AAIDQAI DGVD+LS+SLG+DG LY+DPVAIATFAA+EK IFVSTSAGN+GP TLHN
Sbjct: 273 AAIDQAIEDGVDILSLSLGIDGRALYDDPVAIATFAAMEKGIFVSTSAGNEGPDGQTLHN 332
Query: 300 GIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKK 359
G PWV+TVAAGT+DRE TLTLGNG +VTGLSLYPGNSS + IVF+ CL EL+K
Sbjct: 333 GTPWVLTVAAGTVDREFIGTLTLGNGVSVTGLSLYPGNSSSSESSIVFLKTCLEEKELEK 392
Query: 360 VGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDIL 419
KI +C D N S+S+Q+ N++N+ V+GGVFI+++ LEF+LQS FPAVF+N + GD +
Sbjct: 393 NANKIAICYDTNGSISDQLYNVRNSKVAGGVFITNYTDLEFYLQSEFPAVFLNFEDGDKV 452
Query: 420 KDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAW 479
+YIK ++ A ++FQ T LGTKPAP VASYSSRGPS SCPF+LKPD+MAPG ILA+W
Sbjct: 453 LEYIKNSHSPKARLEFQVTHLGTKPAPKVASYSSRGPSQSCPFILKPDLMAPGALILASW 512
Query: 480 PSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDS 539
P ++ NS FSNFN+ SGTSM+CP AAG+A+LL+GAHP+WSPAAIRSA+MTT+D+
Sbjct: 513 PQKSPATKINSGELFSNFNIISGTSMSCPHAAGVASLLKGAHPKWSPAAIRSAMMTTADA 572
Query: 540 TDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKR 599
DNT I+DIG +N A+P+AMGAGHINP+KALDPGLIYD T++DY++LLCAL+ T ++
Sbjct: 573 LDNTQRPIRDIGRNNNAASPLAMGAGHINPNKALDPGLIYDITSQDYINLLCALDFTSQQ 632
Query: 600 IQTITRSYSVNCSTSSLDLNYPSFIAFFNANESKS----VQEFQRTVTNVGEGVSTYTAS 655
I+ ITRS + +CS SLDLNYPSFI +FN N SKS +QEFQRTVTNVG+G+S YTA
Sbjct: 633 IKAITRSSAYSCSNPSLDLNYPSFIGYFNYNSSKSDPKRIQEFQRTVTNVGDGMSVYTAK 692
Query: 656 VTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVVK 715
+T + + SV PDKL FK KY KQSYKLRIEGP +D V + LSW+ET GK+VVK
Sbjct: 693 LTSMDEYKVSVAPDKLVFKEKYEKQSYKLRIEGPLLVDNYLV--YGSLSWVETSGKYVVK 750
Query: 716 SPIVVTSLGTE 726
SPIV T++G +
Sbjct: 751 SPIVATTIGVD 761
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137570|ref|XP_002327159.1| predicted protein [Populus trichocarpa] gi|222835474|gb|EEE73909.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/740 (65%), Positives = 571/740 (77%), Gaps = 16/740 (2%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNN----ISSSKLLYTYSHVLNGFSA 56
MDLSAMPK+F GQH WY +TL SV + +T + +SSKLLY+Y+HV+NGFSA
Sbjct: 1 MDLSAMPKSFSGQHHWYLSTLASVFDVSDRSTARASPATYLTASSKLLYSYTHVINGFSA 60
Query: 57 SLTPAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVD 116
SLTP+ELEALK SPGYISSI+DLPVK TTHS++FLGL P+S AW S G IIIG+VD
Sbjct: 61 SLTPSELEALKKSPGYISSIKDLPVKHDTTHSTKFLGLAPQSPAWKASNLGDGIIIGLVD 120
Query: 117 TGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176
+GVWPESESYND GM+EIP RWKG C+SG QFNSS+CNKKLIGARFFNKGL+A NP ITI
Sbjct: 121 SGVWPESESYNDHGMSEIPKRWKGGCQSGAQFNSSMCNKKLIGARFFNKGLIANNPNITI 180
Query: 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTS 236
++NS RD +GHGTHTSSTAAG+YVE ASYFGYA GTA G AP A VAMYKALW+ ++T+
Sbjct: 181 SVNSTRDTDGHGTHTSSTAAGNYVEGASYFGYAKGTANGVAPRAHVAMYKALWDNHAYTT 240
Query: 237 DIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT 296
D+IAAIDQAI DGVDVLS+SLG GV L EDP+A+ATFAA EKN+FVSTSAGN+GPF T
Sbjct: 241 DVIAAIDQAISDGVDVLSLSLGFGGVPLNEDPLALATFAATEKNVFVSTSAGNEGPFYET 300
Query: 297 LHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAE 356
LHNGIPWV+TVAAGT+DRE A LTLGNG ++TG S Y G+SS + P+VFMD C +E
Sbjct: 301 LHNGIPWVLTVAAGTLDREFDAVLTLGNGISITGSSFYLGSSSFSEVPLVFMDRC--DSE 358
Query: 357 LKKVGQKIVVCQDKNDS--LSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSK 414
L K G KIVVCQ +S LS+QV+N++NA V+ GVFI++F E F+ SFP V +N K
Sbjct: 359 LIKTGPKIVVCQGAYESNDLSDQVENVRNAGVTAGVFITNFTDTEEFIGDSFPVVIVNLK 418
Query: 415 TGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDS 474
G + DYIK N+ A+ +F+KT LG +PAP VASYSSRGPS SCP VLKPD+MAPG
Sbjct: 419 DGKTIIDYIKSSNSPQASAEFRKTNLGIEPAPRVASYSSRGPSSSCPLVLKPDIMAPGAL 478
Query: 475 ILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIM 534
ILAAWP N++V +S+ FSNF + SGTSMACP AAG+AALLR HP+WSPAAIRSA+M
Sbjct: 479 ILAAWPQNVSVDLNDSQPIFSNFKILSGTSMACPHAAGVAALLREVHPDWSPAAIRSAMM 538
Query: 535 TTSDSTDNTNSDIKDIGDDNK--PATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCA 592
TT+D TDNT IKDIG N+ PA+P+ MGAG +NP+KALDPGLIYDA + DYV LLCA
Sbjct: 539 TTADITDNTMEPIKDIGSGNRINPASPLDMGAGQVNPNKALDPGLIYDANSTDYVRLLCA 598
Query: 593 LNLTMKRIQTITRSYSVNCSTSSLDLNYPSFIAFFNANESKS----VQEFQRTVTNVGEG 648
N T K IQ ITRS S +CS S DLNYPSFIA+FN S S V+EF RTVTNVGEG
Sbjct: 599 TNFTEKEIQVITRSSSTDCSNPSSDLNYPSFIAYFNERFSPSNLTTVREFHRTVTNVGEG 658
Query: 649 VSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIET 708
+STYT SVTP+ G +V PDKL FK KY K SYKL IEGP +DE V F YLSW +
Sbjct: 659 ISTYTVSVTPMSGLKVNVMPDKLEFKTKYEKLSYKLTIEGPALLDE--AVTFGYLSWADA 716
Query: 709 GGKHVVKSPIVVTSLGTEAP 728
GGKHVV+SPIV T+L + P
Sbjct: 717 GGKHVVRSPIVATTLIPDDP 736
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118487593|gb|ABK95622.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/740 (65%), Positives = 570/740 (77%), Gaps = 16/740 (2%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNN----ISSSKLLYTYSHVLNGFSA 56
MDLSAMPK+F GQH WY +TL SV + +T + +SSKLLY+Y+HV+NGFSA
Sbjct: 36 MDLSAMPKSFSGQHHWYLSTLASVFDVSDRSTARASPATYLTASSKLLYSYTHVINGFSA 95
Query: 57 SLTPAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVD 116
SLTP+ELEALK SPGYISSI+DLPVK TTHS++FLGL P+S AW S G IIIG+VD
Sbjct: 96 SLTPSELEALKKSPGYISSIKDLPVKHDTTHSTKFLGLAPQSPAWKASNLGDGIIIGLVD 155
Query: 117 TGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176
+GVWPESESYND GM+EIP RWKG C+SG QFNSS+CNKKLIGARFFNKGL+A NP ITI
Sbjct: 156 SGVWPESESYNDHGMSEIPKRWKGGCQSGAQFNSSMCNKKLIGARFFNKGLIANNPNITI 215
Query: 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTS 236
++NS RD +GHGTHTSSTAAG+YVE ASYFGYA GTA G AP A VAMYKALW+ ++T+
Sbjct: 216 SVNSTRDTDGHGTHTSSTAAGNYVEGASYFGYAKGTANGVAPRAHVAMYKALWDNHAYTT 275
Query: 237 DIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT 296
D+IAAIDQAI DGVDVLS+SLG GV L EDP+A+ATFAA EKN+FVSTSAGN+GPF T
Sbjct: 276 DVIAAIDQAISDGVDVLSLSLGFGGVPLNEDPLALATFAATEKNVFVSTSAGNEGPFYET 335
Query: 297 LHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAE 356
LHNGIPWV+TVAAGT+DRE A LTLGNG ++TG S Y G+SS + P+VFMD C +E
Sbjct: 336 LHNGIPWVLTVAAGTLDREFDAVLTLGNGISITGSSFYLGSSSFSEVPLVFMDRC--DSE 393
Query: 357 LKKVGQKIVVCQDKNDS--LSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSK 414
L K G KIVVCQ +S LS+QV+N++NA V+ GVFI++F E F+ SFP V +N K
Sbjct: 394 LIKTGPKIVVCQGAYESNDLSDQVENVRNAGVTAGVFITNFTDTEEFIGDSFPVVIVNLK 453
Query: 415 TGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDS 474
G + DYIK N+ A+ +F+KT LG +PAP VASYSSRGPS SCP VLKPD+MAPG
Sbjct: 454 DGKTIIDYIKSSNSPQASAEFRKTNLGIEPAPRVASYSSRGPSSSCPLVLKPDIMAPGAL 513
Query: 475 ILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIM 534
ILAAWP N++V +S+ FSNF + SGTSMACP AAG+AALLR HP+WSPAAIRSA+M
Sbjct: 514 ILAAWPQNVSVDLNDSQPIFSNFKILSGTSMACPHAAGVAALLREVHPDWSPAAIRSAMM 573
Query: 535 TTSDSTDNTNSDIKDIGDDNK--PATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCA 592
TT+D TDNT IKDIG N+ PA+P+ MGAG +NP+KALDPGLIYDA + DYV LLCA
Sbjct: 574 TTADITDNTMEPIKDIGSGNRINPASPLDMGAGQVNPNKALDPGLIYDANSTDYVRLLCA 633
Query: 593 LNLTMKRIQTITRSYSVNCSTSSLDLNYPSFIAFFNANESKS----VQEFQRTVTNVGEG 648
N T K IQ ITRS S +CS S DLNYPSFIA+FN S S V EF RTVTNVGEG
Sbjct: 634 TNFTEKEIQVITRSSSTDCSNPSSDLNYPSFIAYFNERFSPSNLTTVCEFHRTVTNVGEG 693
Query: 649 VSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIET 708
+STYT SVTP+ G +V PDKL FK KY K SYKL IEGP +DE V F YLSW +
Sbjct: 694 ISTYTVSVTPMSGLKVNVMPDKLEFKTKYEKLSYKLTIEGPALLDE--AVTFGYLSWADA 751
Query: 709 GGKHVVKSPIVVTSLGTEAP 728
GGKHVV+SPIV T+L + P
Sbjct: 752 GGKHVVRSPIVATTLIPDDP 771
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538260|ref|XP_002510195.1| Cucumisin precursor, putative [Ricinus communis] gi|223550896|gb|EEF52382.1| Cucumisin precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/732 (65%), Positives = 580/732 (79%), Gaps = 10/732 (1%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNIS----SSKLLYTYSHVLNGFSA 56
MDLSAMP+ F H WY ATL S V + N N SSKLLY+Y+HV+NGFSA
Sbjct: 37 MDLSAMPEVFSSHHSWYLATLSSAFA-VSNSRNTINTTPARPFSSKLLYSYTHVINGFSA 95
Query: 57 SLTPAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVD 116
L+ +ELEALK++PGYISSIRDLPVK TT S FLGL SGAW + FG+D+IIGVVD
Sbjct: 96 HLSLSELEALKNTPGYISSIRDLPVKLDTTRSPTFLGLTGNSGAWQPTNFGEDVIIGVVD 155
Query: 117 TGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176
TG+WPESESY+D G++EIP RWKGECESGT+FN+SLCNKKLIGARFFNK L+AK T+
Sbjct: 156 TGIWPESESYSDNGISEIPKRWKGECESGTEFNTSLCNKKLIGARFFNKALIAKT-NGTV 214
Query: 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTS 236
+MNS RD +GHGTHTSSTAAG++V+ AS+FGYA GTA G AP A VAMYKALW+EG++T+
Sbjct: 215 SMNSTRDTDGHGTHTSSTAAGNFVQGASFFGYASGTASGVAPKAHVAMYKALWDEGAYTA 274
Query: 237 DIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT 296
DIIAAIDQAIIDGVDV+S+SLGLDGV LY+DP+A+ATFAA EKNIFVSTSAGN+GP++ T
Sbjct: 275 DIIAAIDQAIIDGVDVVSISLGLDGVPLYDDPIALATFAAAEKNIFVSTSAGNEGPYLET 334
Query: 297 LHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAE 356
LHNGIPWV+TVAAGT+DRE AT+TL NG +VTG +LYPGN S PIVF D CL+ E
Sbjct: 335 LHNGIPWVLTVAAGTVDREFSATVTLENGASVTGSALYPGNYSSSQVPIVFFDSCLDSKE 394
Query: 357 LKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTG 416
L KVG+KIVVC+DKN SL +Q DN++ ++SGG+FI++F LE F+QS FPA+F++ K G
Sbjct: 395 LNKVGKKIVVCEDKNASLDDQFDNLRKVNISGGIFITNFTDLELFIQSGFPAIFVSPKDG 454
Query: 417 DILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSIL 476
+ +KD+I + A+++FQKT G K APS+ASYSSRGPS SCP+V+KPD+M PG IL
Sbjct: 455 ETIKDFINSSTSPQASMEFQKTNFGIKSAPSLASYSSRGPSPSCPYVMKPDIMGPGSLIL 514
Query: 477 AAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTT 536
AAWP N+ V + NSK FSNFN+ SGTSM+CP AAG+AALL+ AHP+WSPAAIRSA+MT+
Sbjct: 515 AAWPQNIEVMRLNSKPLFSNFNILSGTSMSCPHAAGVAALLKNAHPDWSPAAIRSAMMTS 574
Query: 537 SDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLT 596
+ D+T IKDIG++N+PA+P+ MGAG +NP KALDPGLIYD + DYV LLCALN T
Sbjct: 575 VVTMDHTPGPIKDIGNNNQPASPLDMGAGQVNPSKALDPGLIYDLKSTDYVKLLCALNFT 634
Query: 597 MKRIQTITRSYSVNCSTSSLDLNYPSFIAFFNANESKS--VQEFQRTVTNVGEGVSTYTA 654
K+IQ ITRS S +CS+ SLDLNYPSFIAFFN+N SKS VQEF RTVTNVGEG+STYTA
Sbjct: 635 EKQIQIITRSSSNDCSSPSLDLNYPSFIAFFNSNVSKSSTVQEFHRTVTNVGEGMSTYTA 694
Query: 655 SVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVV 714
++TP+ G SV PDKL FK K K SYKL IEGP + E + F YLSW++ GKH V
Sbjct: 695 NLTPINGLKVSVVPDKLEFKAKNEKLSYKLVIEGPTMLKESII--FGYLSWVDDEGKHTV 752
Query: 715 KSPIVVTSLGTE 726
KSPIV T L ++
Sbjct: 753 KSPIVATRLSSD 764
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512611|ref|XP_003626594.1| Subtilisin-like protease [Medicago truncatula] gi|355501609|gb|AES82812.1| Subtilisin-like protease [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/731 (63%), Positives = 560/731 (76%), Gaps = 10/731 (1%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTP 60
M+LSAMPK F Q WY ATL S+ ++ +N + + I S KL YTY++V+NGFSASL+P
Sbjct: 36 MNLSAMPKPFLSQQSWYLATLSSLL-DITSNNDQLSYIFSPKLTYTYTNVMNGFSASLSP 94
Query: 61 AELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVW 120
+LEALK++PGYISSIRDLP+KP TTHS F+GLNP G WP +++GK+IIIG++D+G+W
Sbjct: 95 LKLEALKTTPGYISSIRDLPIKPDTTHSPHFIGLNPVFGTWPTTQYGKNIIIGLIDSGIW 154
Query: 121 PESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNS 180
PESES+ D M IPSRWKG+CE+GTQF+SSLCNKKLIGARFFNKGLLA NP ITI MNS
Sbjct: 155 PESESFKDDEMPNIPSRWKGKCENGTQFDSSLCNKKLIGARFFNKGLLANNPNITITMNS 214
Query: 181 PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIA 240
RD +GHGTHTS+TAAGS VE AS+FGYA G+A+G AP A V+MYK LW EG++ SD IA
Sbjct: 215 TRDIDGHGTHTSTTAAGSKVEDASFFGYAAGSAIGMAPHAHVSMYKVLWKEGAYASDTIA 274
Query: 241 AIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNG 300
AID AI DGVDVLS+SLG D LYEDPVAIATFAA+EKNIFVSTSAGN+GP + TLHNG
Sbjct: 275 AIDSAISDGVDVLSLSLGFDEAPLYEDPVAIATFAAMEKNIFVSTSAGNRGPVLETLHNG 334
Query: 301 IPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKV 360
PWV+TVAAGTMDRE LTLGNG VTGLSLYPGN S P+VF+ C NL EL +
Sbjct: 335 TPWVITVAAGTMDREFHGDLTLGNGAKVTGLSLYPGNFSSGKVPMVFLSSCDNLKELIRA 394
Query: 361 GQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD-FDGLEFFLQSSFPAVFMNSKTGDIL 419
KIVVC+DKN +L+ QVDN+ V GVFIS+ + + +++Q+ FP++F+N G+++
Sbjct: 395 RNKIVVCEDKNRTLATQVDNLDRIKVVAGVFISNSSEDITYYIQTKFPSIFLNPINGELI 454
Query: 420 KDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAW 479
KD+IK N A++QF KT LGTKPAPSV SYSSRGPS SCPFVLKPD+ APG ILA+W
Sbjct: 455 KDFIKCNTNPKASMQFNKTVLGTKPAPSVDSYSSRGPSHSCPFVLKPDITAPGTLILASW 514
Query: 480 PSNL-AVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538
P N+ A F+NFNL SGTSM+CP AG+AALL+ HP WSPAAIRSA+MTTSD
Sbjct: 515 PQNVPATELQFQNNLFNNFNLLSGTSMSCPHVAGVAALLKEMHPCWSPAAIRSAMMTTSD 574
Query: 539 STDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMK 598
DNT I DIG+ +PA+P+A+GAGHINP++ALDPGL+YDA +DYV+LLCALN T K
Sbjct: 575 MLDNTKELITDIGNGYRPASPLALGAGHINPNRALDPGLVYDAGKQDYVNLLCALNFTQK 634
Query: 599 RIQTITRSYSVNCSTSSLDLNYPSFIAFFNANESKS---VQEFQRTVTNVGEGVSTYTAS 655
I ITRS NCS SLDLNYPSFI+FFN KS QEFQRTVTNVGE + Y A+
Sbjct: 635 NIAAITRSSFNNCSNPSLDLNYPSFISFFNNASVKSKVITQEFQRTVTNVGEEPTIYVAN 694
Query: 656 VTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVVK 715
+TP++GF+ SV P+KL FK K K +YKLRIEGP EE V F YL+W T KH V+
Sbjct: 695 ITPIEGFHVSVIPNKLVFKEKNEKVAYKLRIEGPKM--EENKVVFGYLTW--TDSKHNVR 750
Query: 716 SPIVVTSLGTE 726
SPIVVTSL +E
Sbjct: 751 SPIVVTSLNSE 761
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559732|ref|XP_003548151.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/725 (63%), Positives = 551/725 (76%), Gaps = 14/725 (1%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTP 60
MD+SAMPKA+ H WY +TL S N +A T+ N SKL+Y Y++V+NGFSA+L+P
Sbjct: 34 MDISAMPKAYSSHHTWYLSTLSSALENSKATTDNLN----SKLIYIYTNVINGFSANLSP 89
Query: 61 AELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVW 120
ELEALK+SPGY+SS+RDL K TTHS QFLGLN GAWP S+FGKDII+G+VDTG+
Sbjct: 90 KELEALKTSPGYVSSMRDLRAKRDTTHSPQFLGLNKNVGAWPASQFGKDIIVGLVDTGIS 149
Query: 121 PESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNS 180
PES+SYND G+T+IPSRWKG+CES + CN KLIGARFF KG LAK+P T ++S
Sbjct: 150 PESKSYNDEGLTKIPSRWKGQCESSIK-----CNNKLIGARFFIKGFLAKHPNTTNNVSS 204
Query: 181 PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIA 240
RD +GHGTHTSSTAAGS VE ASY+GYA G+A G A ARVAMYKALW+EG + SDIIA
Sbjct: 205 TRDTDGHGTHTSSTAAGSVVEGASYYGYASGSATGIASRARVAMYKALWDEGDYASDIIA 264
Query: 241 AIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNG 300
AID AI DGVDVLS+S G D V LYEDPVAIATF+A+EK IFVSTSAGN+GPF+G LHNG
Sbjct: 265 AIDSAISDGVDVLSLSFGFDDVPLYEDPVAIATFSAMEKGIFVSTSAGNEGPFLGRLHNG 324
Query: 301 IPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKV 360
IPWV+TVAAGT+DRE TLTLGNG +TG+SLY GN S + PIVFM C N+ EL KV
Sbjct: 325 IPWVITVAAGTLDREFHGTLTLGNGVQITGMSLYHGNFSSSNVPIVFMGLCDNVKELAKV 384
Query: 361 GQKIVVCQDKNDSLSN-QVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDIL 419
KIVVC+DKN ++ + Q + +A+V V IS+ FFL +SF ++ ++ G+ +
Sbjct: 385 KSKIVVCEDKNGTIIDVQAAKLIDANVVAAVLISNSSYSSFFLDNSFASIIVSPINGETV 444
Query: 420 KDYIKIENNAT-ATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAA 478
K YIK N T T+ F+KT LG++PAPSV YSSRGPS S PFVLKPD+ APG SILAA
Sbjct: 445 KAYIKSTNYGTKGTLSFKKTVLGSRPAPSVDDYSSRGPSSSVPFVLKPDITAPGTSILAA 504
Query: 479 WPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538
WP N+ V S+ FSNFNL SGTSMACP AG+AALLRGAHP+WS AAIRSAIMTTSD
Sbjct: 505 WPQNVPVEVFGSQNIFSNFNLLSGTSMACPHVAGVAALLRGAHPDWSVAAIRSAIMTTSD 564
Query: 539 STDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMK 598
DNT IKD+GDD KPATP+AMGAGH+NP++ALDPGL+YD +DYV+LLCAL T K
Sbjct: 565 MFDNTMGLIKDVGDDYKPATPLAMGAGHVNPNRALDPGLVYDVGVQDYVNLLCALGYTQK 624
Query: 599 RIQTITRSYSVNCSTSSLDLNYPSFIAFFNANESKSVQEFQRTVTNVGEGVSTYTASVTP 658
I IT + S +CS SLDLNYPSFIAFF +N S + QEF+RTVTNVGEG + Y ASVTP
Sbjct: 625 NITVITGTSSNDCSKPSLDLNYPSFIAFFKSNSSSTTQEFERTVTNVGEGQTIYVASVTP 684
Query: 659 LKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVVKSPI 718
+KG++ SV P KL FK K KQSYKLRIEGP + E+ VAF YL+W + KHV++SPI
Sbjct: 685 VKGYHVSVIPKKLVFKEKNEKQSYKLRIEGPIKKKEKN-VAFGYLTWTDL--KHVIRSPI 741
Query: 719 VVTSL 723
VV++L
Sbjct: 742 VVSTL 746
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560237|ref|XP_003548400.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/726 (65%), Positives = 559/726 (76%), Gaps = 12/726 (1%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTP 60
MD+SAMPK F QH WY +TL S N +A TN N++SSSKL+YTY++ +NGFSA+L+P
Sbjct: 33 MDISAMPKTFSTQHSWYLSTLSSALDNSKA-TNNLNSVSSSKLIYTYTNAINGFSANLSP 91
Query: 61 AELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVW 120
ELE+LK+SPGY+S +RDLP K TTHS QFLGLNP GAWPVS+FGKD+I+G+VDTG+W
Sbjct: 92 KELESLKTSPGYVSYMRDLPAKRDTTHSPQFLGLNPNEGAWPVSEFGKDVIVGLVDTGIW 151
Query: 121 PESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNS 180
PES+S+ND GMTEIPSRWKG+CES + CNKKLIGA+FFNKG+LA +P ITIA NS
Sbjct: 152 PESKSFNDKGMTEIPSRWKGQCESTIK-----CNKKLIGAQFFNKGMLANSPNITIAANS 206
Query: 181 PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIA 240
RD GHGTHTSSTAAGS VE ASYFGYA G+A G A ARVAMYKAL EG SDIIA
Sbjct: 207 TRDTEGHGTHTSSTAAGSVVEGASYFGYASGSATGIASGARVAMYKALGEEGDLASDIIA 266
Query: 241 AIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNG 300
AID AI+DGVDVLS+S G D V LYEDPVAIATFAA+EK IFVSTSAGN+GP++G LHNG
Sbjct: 267 AIDSAILDGVDVLSLSFGFDYVPLYEDPVAIATFAAMEKGIFVSTSAGNEGPYLGRLHNG 326
Query: 301 IPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKV 360
IPWV+TVAAGT+DRE TLTLGNG VTG+SLY GN S + PIVFM C N+ EL KV
Sbjct: 327 IPWVITVAAGTLDREFHGTLTLGNGVQVTGMSLYHGNFSSSNVPIVFMGLCDNVKELAKV 386
Query: 361 GQKIVVCQDKNDS-LSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDIL 419
+ IVVC+DK+ + + QV N+ NA+V VFIS+ FF +SF ++F+ G+I+
Sbjct: 387 RRNIVVCEDKDGTFIEAQVSNVFNANVVAAVFISNSSDSIFFYDNSFASIFVTPINGEIV 446
Query: 420 KDYIKIENN-ATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAA 478
K YIKI N+ A T+ F+ T LGT+PAPSV SYSSRGPS S PFVLKPD+ APG SILAA
Sbjct: 447 KAYIKITNSGANGTLSFKTTALGTRPAPSVDSYSSRGPSSSAPFVLKPDITAPGTSILAA 506
Query: 479 WPSNLAVSQ-TNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTS 537
WP N+ V K F++FNL SGTSMACP AG+AALLRGAHPEWS AAIRSAIMTTS
Sbjct: 507 WPPNVPVDVFIAPKNVFTDFNLLSGTSMACPHVAGVAALLRGAHPEWSVAAIRSAIMTTS 566
Query: 538 DSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTM 597
D DNT IKDIGDD KPATP+AMGAGH+NP++ALDPGL+YD +DYV+LLCAL T
Sbjct: 567 DMFDNTMGLIKDIGDDYKPATPLAMGAGHVNPNRALDPGLVYDVGVQDYVNLLCALGYTQ 626
Query: 598 KRIQTITRSYSVNCSTSSLDLNYPSFIAFFNANESKSVQEFQRTVTNVGEGVSTYTASVT 657
K I IT + S +CS SLDLNYPSFIAFFN+N S + QEFQRTVTNVGEG + Y ASVT
Sbjct: 627 KNITVITGNSSNDCSKPSLDLNYPSFIAFFNSNSSSASQEFQRTVTNVGEGQTIYVASVT 686
Query: 658 PLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVVKSP 717
P+KG+ SV P+KL FK K K SYKLRIEGP E VAF Y +W + KHVV+SP
Sbjct: 687 PVKGYYVSVIPNKLVFKEKNEKLSYKLRIEGPTNKKVEN-VAFGYFTWTDV--KHVVRSP 743
Query: 718 IVVTSL 723
IVVT+L
Sbjct: 744 IVVTTL 749
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522478|ref|XP_003529873.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/725 (63%), Positives = 548/725 (75%), Gaps = 12/725 (1%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTP 60
MD+SAMPKAF QH WY +TL S N +A ++ N++ +SKL+YTY++V+NGFSA+L+P
Sbjct: 34 MDISAMPKAFSSQHTWYLSTLSSALDNSKATSDNLNSVINSKLIYTYTNVINGFSANLSP 93
Query: 61 AELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVW 120
ELEALK+SPGY+SS+RDL K TTHS FLGLNP GAWPVS+FGKD+I+G VDTG+
Sbjct: 94 KELEALKTSPGYVSSMRDLRAKRDTTHSPHFLGLNPNVGAWPVSQFGKDVIVGFVDTGIS 153
Query: 121 PESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNS 180
PESES+ND G+T+IPSRWKG+CES + CN KLIGA+FFNKGLLAK+P T ++S
Sbjct: 154 PESESFNDEGLTKIPSRWKGQCESTIK-----CNNKLIGAKFFNKGLLAKHPNTTNNVSS 208
Query: 181 PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIA 240
RD GHGTHTSSTAAGS VE ASYFGYA G+A G A ARVAMYKALW +G + SDIIA
Sbjct: 209 TRDTEGHGTHTSSTAAGSVVEGASYFGYASGSATGVASRARVAMYKALWEQGDYASDIIA 268
Query: 241 AIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNG 300
AID AI DGVDVLS+S G D V LYEDPVAIATFAA+E+ IFVSTSAGN+GPF+ LHNG
Sbjct: 269 AIDSAISDGVDVLSLSFGFDDVPLYEDPVAIATFAAMERGIFVSTSAGNEGPFLAVLHNG 328
Query: 301 IPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKV 360
IPWV+TVAAGT+DRE TLTLGNG VTG+SLY GN S + PIVFM C + EL K
Sbjct: 329 IPWVITVAAGTLDREFQGTLTLGNGVQVTGMSLYHGNFSSSNVPIVFMGLCNKMKELAKA 388
Query: 361 GQKIVVCQDKNDSLSN-QVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDIL 419
KIVVC+DKN ++ + QV + + V VFIS+ FF ++SF ++ ++ G+ +
Sbjct: 389 KNKIVVCEDKNGTIIDAQVAKLYD--VVAAVFISNSSESSFFFENSFASIIVSPINGETV 446
Query: 420 KDYIKIENN-ATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAA 478
K YIK N+ A T+ F++T LGT+PAPSV YSSRGPS SCPFVLKPD+ APG SILAA
Sbjct: 447 KGYIKSTNSGAKGTMSFKRTVLGTRPAPSVDDYSSRGPSSSCPFVLKPDITAPGTSILAA 506
Query: 479 WPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538
WP N+ V S FSNFNL SGTSMACP AG+AALLRGAHPEWS AAIRSAIMTTSD
Sbjct: 507 WPQNVPVEVFGSHNIFSNFNLLSGTSMACPHVAGVAALLRGAHPEWSVAAIRSAIMTTSD 566
Query: 539 STDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMK 598
DNT IKDIGD K A+P+A+GAGH+NP++ LDPGL+YD +DYV+LLCAL T K
Sbjct: 567 MFDNTMGLIKDIGDGYKQASPLALGAGHVNPNRGLDPGLVYDVRVQDYVNLLCALGYTQK 626
Query: 599 RIQTITRSYSVNCSTSSLDLNYPSFIAFFNANESKSVQEFQRTVTNVGEGVSTYTASVTP 658
I IT + S +CS SLDLNYPSFIAF N+N S + QEFQRTVTNVGEG + Y ASVTP
Sbjct: 627 NITIITGTSSNDCSKPSLDLNYPSFIAFINSNGSSAAQEFQRTVTNVGEGKTIYDASVTP 686
Query: 659 LKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVVKSPI 718
+KG++ SV P KL FK K K SYKL IEGP + E VAF YL+W + KHVV+SPI
Sbjct: 687 VKGYHLSVIPKKLVFKEKNEKLSYKLTIEGPTKKKVEN-VAFGYLTWTDV--KHVVRSPI 743
Query: 719 VVTSL 723
VVT+L
Sbjct: 744 VVTTL 748
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| UNIPROTKB|Q6I5K9 | 761 | OSJNBb0088F07.10 "Putative sub | 0.973 | 0.932 | 0.484 | 9e-180 | |
| UNIPROTKB|Q8S1N3 | 760 | P0677H08.26 "Os01g0868900 prot | 0.968 | 0.928 | 0.457 | 4.3e-164 | |
| TAIR|locus:2155583 | 736 | AT5G67090 "AT5G67090" [Arabido | 0.945 | 0.936 | 0.439 | 9.5e-153 | |
| UNIPROTKB|Q94H95 | 764 | OSJNBb0048A17.11 "cDNA clone:J | 0.958 | 0.914 | 0.419 | 4.2e-134 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.957 | 0.922 | 0.417 | 5.4e-134 | |
| TAIR|locus:2064696 | 754 | AT2G05920 "AT2G05920" [Arabido | 0.950 | 0.919 | 0.403 | 3.4e-132 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.563 | 0.530 | 0.370 | 1.3e-126 | |
| UNIPROTKB|Q75I27 | 765 | OSJNBa0091E13.30 "Putaive subt | 0.820 | 0.781 | 0.429 | 2.4e-122 | |
| UNIPROTKB|Q8LSS2 | 773 | OSJNBa0011L09.20 "Subtilisin N | 0.519 | 0.490 | 0.379 | 2.5e-121 | |
| TAIR|locus:2025457 | 774 | SBTI1.1 "AT1G01900" [Arabidops | 0.931 | 0.877 | 0.389 | 1.8e-119 |
| UNIPROTKB|Q6I5K9 OSJNBb0088F07.10 "Putative subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1745 (619.3 bits), Expect = 9.0e-180, P = 9.0e-180
Identities = 357/737 (48%), Positives = 479/737 (64%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTP 60
MD SAMP+AF Q WY +TL + + + + Y Y + ++GF+A +T
Sbjct: 42 MDKSAMPRAFASQASWYESTLAAAAPGAD-------------MFYVYDNAMHGFAARVTA 88
Query: 61 AELEALKSSPGYISSIRD--LPVKPHTTHSSQFLGLNPKSGA-WPVSKFGKDIIIGVVDT 117
ELE L+ S G++S D V+ TTH+ +FLG++ SG W S++G+D+I+GVVDT
Sbjct: 89 DELEKLRGSRGFVSCYPDDARAVRRDTTHTPEFLGVSASSGGLWEASEYGEDVIVGVVDT 148
Query: 118 GVWPESESYNDGGMTEIPSRWKGECESGTQFNSS-LCNKKLIGARFFNKGLLAKNPTITI 176
GVWPES S+ D G+ +P+RWKG CESGT F++ +CN+KL+GAR FNKGL+A +TI
Sbjct: 149 GVWPESASFRDDGLPPVPARWKGYCESGTAFDAGKVCNRKLVGARKFNKGLVAAT-NLTI 207
Query: 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTS 236
A+NSPRD +GHGTHTSSTAAGS V AS+FGYA GTA G AP ARVAMYKALW+EG++ S
Sbjct: 208 AVNSPRDTDGHGTHTSSTAAGSPVAGASFFGYAPGTARGMAPRARVAMYKALWDEGTYPS 267
Query: 237 XXXXXXXXXXXXGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT 296
GVDVLS+SLGL+ V Y DP+AI FAA+++ +FVSTSAGN GP G
Sbjct: 268 DILAAIDQAIADGVDVLSLSLGLNDVPFYRDPIAIGAFAAMQRGVFVSTSAGNDGPDPGF 327
Query: 297 LHNGIPWVMTVAAGTMDREXXXXXXXXXXXXXXXXSLYPGNSSLI-DFPIVFMDECLNLA 355
LHNG PW +TVA+GT DRE S+YPG+ S I VF+ C N
Sbjct: 328 LHNGTPWTLTVASGTGDREFAGIVRLGDGTTVIGQSMYPGSPSTIASSGFVFLGACDNDT 387
Query: 356 ELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKT 415
L + K+V+C D DSLS + +Q A G+F+S+ E +FP V ++ +
Sbjct: 388 ALARNRDKVVLC-DATDSLSAAIFAVQVAKARAGLFLSNDSFRELSEHFTFPGVILSPQD 446
Query: 416 GDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSI 475
L YIK A+I+F T LGTKPAP VA+YSSRGPS SCP VLKPDV+APG I
Sbjct: 447 APALLQYIKRSRAPRASIKFGVTILGTKPAPVVATYSSRGPSASCPTVLKPDVLAPGSLI 506
Query: 476 LAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMX 535
LA+WP N++VS S+ +S FN+ SGTSM+CP A+G+AAL++ HPEWSPAA+RSA+M
Sbjct: 507 LASWPENVSVSTVGSQQLYSRFNVISGTSMSCPHASGVAALIKAVHPEWSPAAVRSAMMT 566
Query: 536 XXXXXXXXXXXIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNL 595
IKD+G N+ ATP+AMG+GHI+P++A+DPGL+YDA +DYV L+CA+N
Sbjct: 567 TASAVDNTNAPIKDMGRANRGATPLAMGSGHIDPNRAVDPGLVYDAGADDYVKLMCAMNY 626
Query: 596 TMKRIQTITRSYS--VNCSTSSLDLNYPSFIAFFNANESK-SVQEFQRTVTNVGEGVSTY 652
T +I+T+ +S S V+C+ ++LDLNYPSFIAFF+ + + + F R VTNVG+ ++Y
Sbjct: 627 TAAQIKTVAQSPSSAVDCAGATLDLNYPSFIAFFDPGATAPAARTFTRAVTNVGDAPASY 686
Query: 653 TASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEET-VVAFCYLSWIETGGK 711
+A V L G SV P++L F K+ Q Y + I G QM +T V L+W++ GK
Sbjct: 687 SAKVKGLGGLTVSVSPERLVFGRKHETQKYTVVIRG--QMKNKTDEVLHGSLTWVDDAGK 744
Query: 712 HVVKSPIVVTSLGTEAP 728
+ V+SPIV T+ + AP
Sbjct: 745 YTVRSPIVATT-ASSAP 760
|
|
| UNIPROTKB|Q8S1N3 P0677H08.26 "Os01g0868900 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
Identities = 341/746 (45%), Positives = 461/746 (61%)
Query: 1 MDLSAMPKAFRGQHG------WYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGF 54
MD SAMP G +G WY+ATL++ + ++++Y Y + ++GF
Sbjct: 31 MDKSAMPSGGGGGNGSTSLESWYAATLRAAA-------------PGARMIYVYRNAMSGF 77
Query: 55 SASLTPAELEALKSSPGYISSIRDLPV-KPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIG 113
+A L+ + L SPG++SS D PV + TTH+ +FLG++ G W + +G +I+G
Sbjct: 78 AARLSAEQHARLSRSPGFLSSYLDAPVTRRDTTHTPEFLGVSGAGGLWETASYGDGVIVG 137
Query: 114 VVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSS-LCNKKLIGARFFNKGLLAK-- 170
VVDTGVWPES SY D G+ +P+RWKG CESGT+F+ + CN+KLIGAR F+ GL A
Sbjct: 138 VVDTGVWPESGSYRDDGLPPVPARWKGYCESGTRFDGAKACNRKLIGARKFSAGLAAALG 197
Query: 171 NPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWN 230
ITIA+NSPRD +GHGTHTSSTAAGS V ASYFGYA G A G AP ARVA+YK L++
Sbjct: 198 RRNITIAVNSPRDTDGHGTHTSSTAAGSPVPGASYFGYAPGVARGMAPRARVAVYKVLFD 257
Query: 231 EGSFTSXXXXXXXXXXXXGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQ 290
EG +T+ GVDVLS+SLGL+ L+ DPVAI +FAA++ IFVSTSAGN
Sbjct: 258 EGGYTTDIVAAIDQAIADGVDVLSISLGLNNRPLHTDPVAIGSFAAMQHGIFVSTSAGND 317
Query: 291 GPFIGTLHNGIPWVMTVAAGTMDREXXXXXXXXXXXXXXXXSLYPGNSSLIDF-PIVFMD 349
GP + LHNG PW +TVAAGT+DRE SLY G+ + P+V++D
Sbjct: 318 GPGLSVLHNGAPWALTVAAGTVDREFSGIVELGDGTTVIGESLYAGSPPITQSTPLVYLD 377
Query: 350 ECLNLAELKKVGQKIVVCQDKNDSLSNQV--DNIQNASVSGGVFISDFDGLEFFLQSSFP 407
C N +++ KIV+C + S + QV +Q+A+ +GG+F+++ F Q +FP
Sbjct: 378 SCDNFTAIRRNRDKIVLCDAQASSFALQVAVQFVQDANAAGGLFLTNDPFRLLFEQFTFP 437
Query: 408 AVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPD 467
++ G + YI+ TA I F+ T L TKPAP A+YSSRGP++SCP VLKPD
Sbjct: 438 GALLSPHDGPAILRYIQRSGAPTAKIAFRATLLNTKPAPEAAAYSSRGPAVSCPTVLKPD 497
Query: 468 VMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPA 527
+MAPG +LA+W ++AV + S FN+ SGTSMA P AAG+AALLR HPEWSPA
Sbjct: 498 IMAPGSLVLASWAESVAVVGNMT----SPFNIISGTSMATPHAAGVAALLRAVHPEWSPA 553
Query: 528 AIRSAIMXXXXXXXXXXXXIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYV 587
AIRSA+M I D+ ATP+AMG+GHI+P++A DPGL+YDA DYV
Sbjct: 554 AIRSAMMTTAATLDNTGRSINDMARAGHAATPLAMGSGHIDPNRAADPGLVYDAVPGDYV 613
Query: 588 SLLCALNLTMKRIQTITR--SYSVNCS-TSSLDLNYPSFIAFFN----ANESKSVQEFQR 640
L+CA+ + I+ +T+ +Y+VNCS SS DLNYPSFIA+F+ A + + F R
Sbjct: 614 ELMCAMGYNLSDIRAVTQWSTYAVNCSGASSPDLNYPSFIAYFDRRSAAAAAAETKTFVR 673
Query: 641 TVTNVGEGVSTYTASVTP-LKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVA 699
VTNVG G ++Y A V L G SV P +L F K Q Y L + G + ++ V
Sbjct: 674 VVTNVGAGAASYRAKVKGNLGGLAVSVTPSRLVFGKKGETQKYTLVLRGKIKGADK--VL 731
Query: 700 FCYLSWIETGGKHVVKSPIVVTSLGT 725
L+W++ GK+ V+SPIV T+L +
Sbjct: 732 HGSLTWVDDAGKYTVRSPIVATTLSS 757
|
|
| TAIR|locus:2155583 AT5G67090 "AT5G67090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1490 (529.6 bits), Expect = 9.5e-153, P = 9.5e-153
Identities = 328/746 (43%), Positives = 446/746 (59%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTP 60
MDLSA P F W+S TL SV N K++Y Y+ ++GFSA LT
Sbjct: 29 MDLSAKPLPFSDHRSWFSTTLTSVITN-----------RKPKIIYAYTDSVHGFSAVLTN 77
Query: 61 AELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVW 120
+EL+ LK PGY+S +DLPVK HTT S +F+GLN SG WPVS +G I+IG++DTG+W
Sbjct: 78 SELQRLKHKPGYVSFTKDLPVKLHTTFSPKFIGLNSTSGTWPVSNYGAGIVIGIIDTGIW 137
Query: 121 PESESYNDGGMTEIPSRWKGECESGTQFNSS-LCNKKLIGARFFNKGLLAKNPTIT---I 176
P+S S++D G+ +PS+WKG CE FNSS LCNKKLIGA+ FNKGL A NP + I
Sbjct: 138 PDSPSFHDDGVGSVPSKWKGACE----FNSSSLCNKKLIGAKVFNKGLFANNPDLRETKI 193
Query: 177 AM-NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFT 235
+SP D GHGTH ++ AAG++V+ ASYF YA GTA G AP A +A+YKA W EG ++
Sbjct: 194 GQYSSPYDTIGHGTHVAAIAAGNHVKNASYFSYAQGTASGIAPHAHLAIYKAAWEEGIYS 253
Query: 236 SXXXXXXXXXXXXGVDVLSMSLGL--------DGVDLYEDPVAIATFAAIEKNIFVSTSA 287
S GV V+S+SLGL DG L DP+A+A+FAAI+K +FV TS
Sbjct: 254 SDVIAAIDQAIRDGVHVISLSLGLSFEDDDDNDGFGLENDPIAVASFAAIQKGVFVVTSG 313
Query: 288 GNQGPFIGTLHNGIPWVMTVAAGTMDREXXXXXXXXXXXXXXXXSLYPGNSSLIDFPIVF 347
GN GP+ +L NG PW+MTV AGT+ R+ SL+PG + FP+ +
Sbjct: 314 GNDGPYYWSLINGAPWIMTVGAGTIGRQFQGTLTFGNRVSFSFPSLFPGEFPSVQFPVTY 373
Query: 348 MDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEF--FLQSS 405
++ E K + +IVVC + N ++ +++ I++ + V I+D LE ++
Sbjct: 374 IES--GSVENKTLANRIVVCNE-NINIGSKLHQIRSTGAAAVVLITD-KLLEEQDTIKFQ 429
Query: 406 FPAVFMNSKTGDILKDYIKI-ENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVL 464
FP F+ SK + ++ Y +NNATA ++F+KT +GTKPAP V +YSSRGP S P +L
Sbjct: 430 FPVAFIGSKHRETIESYASSNKNNATAKLEFRKTVIGTKPAPEVGTYSSRGPFTSFPQIL 489
Query: 465 KPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEW 524
KPD++APG IL+AWPS ++ T + FS FNL +GTSMA P AG+AAL++ HP W
Sbjct: 490 KPDILAPGTLILSAWPSVEQITGTRALPLFSGFNLLTGTSMAAPHVAGVAALIKQVHPNW 549
Query: 525 SPAAIRSAIMXXXXXXXXXXXXIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTE 584
SP+AI+SAIM DN P+A+GAGH++ +K L+PGLIYD T +
Sbjct: 550 SPSAIKSAIMTTALTL------------DN----PLAVGAGHVSTNKVLNPGLIYDTTPQ 593
Query: 585 DYVSLLC-ALNLTMKRIQTITRS-YSVNCSTSSLDLNYPSFIAFFNANESKSVQEFQRTV 642
D+++ LC + K I ITRS S C S LNYPS IA+F +++S S + F+RT+
Sbjct: 594 DFINFLCHEAKQSRKLINIITRSNISDACKKPSPYLNYPSIIAYFTSDQS-SPKIFKRTL 652
Query: 643 TNVGEGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFC- 701
TNVGE +Y V LKG N V+P KL F K K SY +R+E P + E V
Sbjct: 653 TNVGEAKRSYIVRVRGLKGLNVVVEPKKLMFSEKNEKLSYTVRLESPRGLQENVVYGLVS 712
Query: 702 YLSWIETGGKHVVKSPIVVTSLGTEA 727
++ E + V +V TSL E+
Sbjct: 713 WVD--EDEAEFEVSCSVVATSLVQES 736
|
|
| UNIPROTKB|Q94H95 OSJNBb0048A17.11 "cDNA clone:J033123P12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1314 (467.6 bits), Expect = 4.2e-134, P = 4.2e-134
Identities = 312/744 (41%), Positives = 415/744 (55%)
Query: 1 MDLSAMPKAFRGQHG-WYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLT 59
M SA P F +HG WY+A+LQSVS +A T +LYTY +++G+SA LT
Sbjct: 41 MSRSAKPNDFV-EHGEWYAASLQSVS---DAAT----------VLYTYDTIVHGYSARLT 86
Query: 60 PAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGV 119
AE EAL+S PG + ++ + HTT + +FLGL+ +P S G D+I+GV+DTGV
Sbjct: 87 RAEAEALESQPGVLLVNPEVRYELHTTRTPEFLGLDRTDALFPQSNTGSDVIVGVLDTGV 146
Query: 120 WPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGL-LAKNPTITIAM 178
WPE SY+D G+ +P+ WKG+CE G FN+S CNKKLIGARFF G AK P T
Sbjct: 147 WPERPSYDDAGLGPVPAGWKGKCEEGNDFNASACNKKLIGARFFLTGYEAAKGPVDTSKE 206
Query: 179 N-SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSX 237
+ SPRD +GHGTHTSSTAAGS V A GYA GTA G AP ARVA YK W G F+S
Sbjct: 207 SRSPRDNDGHGTHTSSTAAGSAVRGADLLGYAAGTAKGMAPHARVATYKVCWVGGCFSSD 266
Query: 238 XXXXXXXXXXXGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL 297
GVDVLS+SLG D Y D +A+ ++A+E+ IFVS SAGN GP TL
Sbjct: 267 ILKAMEVAVNDGVDVLSLSLGGGTADYYRDSIAVGAYSAMERGIFVSCSAGNAGPGSATL 326
Query: 298 HNGIPWVMTVAAGTMDREXXXXXXXXXXXXXXXXSLYPGNS-SLIDFPIVFMDECLN--L 354
NG PW+ TV AGT+DR+ SLY G P ++ N +
Sbjct: 327 SNGAPWITTVGAGTLDRDFPAHVVLGNGKNYSGVSLYSGKQLPTTPVPFIYAGNASNSSM 386
Query: 355 AEL--------KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDF-DGLEFFLQSS 405
L +KV KIV+C ++ + +++A +G V + +G E +
Sbjct: 387 GALCMSGSLIPEKVAGKIVLCDRGTNARVQKGFVVKDAGGAGMVLANTAANGEELVADAH 446
Query: 406 -FPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVL 464
P + K GD ++ Y + N TA+I F T++G +P+P VA++SSRGP+ P +L
Sbjct: 447 VLPGAGVGQKAGDTMRAYALSDPNPTASIVFAGTQVGIQPSPVVAAFSSRGPNTVTPGIL 506
Query: 465 KPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEW 524
KPD++APG +ILAAW ++ S FN+ SGTSM+CP +G+AALLR AH +W
Sbjct: 507 KPDLIAPGVNILAAWSGSVGPSGLAGDSRRVGFNIISGTSMSCPHVSGLAALLRAAHQDW 566
Query: 525 SPAAIRSAIMXXXXXXXXXXXXIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTE 584
SPAAIRSA+M I D+ PATP+ +GAGH++P KA+DPGL+YD
Sbjct: 567 SPAAIRSALMTTSYNGYPNGNGILDVAT-GLPATPLDVGAGHVDPSKAVDPGLVYDIAAA 625
Query: 585 DYVSLLCALNLTMKRIQTITRSYSVNCS---TSSLD-LNYPSFIAFFNANESKSVQEFQR 640
DYV LCA++ +I +T+ + CS T ++ LNYPSF F A + ++ R
Sbjct: 626 DYVDFLCAISYGPMQIAALTKHTTDACSGNRTYAVTALNYPSFSVTFPA--TGGTEKHTR 683
Query: 641 TVTNVGEGVSTYTASVTPLKG---FNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETV 697
TVTNVG+ TY + + G SV+P LTF KQSY + M T
Sbjct: 684 TVTNVGQP-GTYKVTASAAAGSTPVTVSVEPSTLTFTKSGEKQSYTVSFAAA-AMPSGTN 741
Query: 698 VAFCYLSWIETGGKHVVKSPIVVT 721
F L W + HVV SPI VT
Sbjct: 742 -GFGRLVW--SSDHHVVSSPIAVT 762
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
Identities = 310/743 (41%), Positives = 423/743 (56%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTP 60
M S MP +F WY ++L+S+S S++LLYTY + ++GFS LT
Sbjct: 36 MAKSQMPSSFDLHSNWYDSSLRSIS-------------DSAELLYTYENAIHGFSTRLTQ 82
Query: 61 AELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSG-AWPVSKFGKDIIIGVVDTGV 119
E ++L + PG IS + + + HTT + FLGL+ + +P + D+++GV+DTGV
Sbjct: 83 EEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGSYSDVVVGVLDTGV 142
Query: 120 WPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMN 179
WPES+SY+D G IPS WKG CE+GT F +SLCN+KLIGARFF +G + I +
Sbjct: 143 WPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKE 202
Query: 180 S--PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSX 237
S PRD +GHGTHTSSTAAGS VE AS GYA GTA G AP ARVA+YK W G F+S
Sbjct: 203 SRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGGCFSSD 262
Query: 238 XXXXXXXXXXXGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL 297
V+VLSMSLG D Y D VAI FAA+E+ I VS SAGN GP +L
Sbjct: 263 ILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSL 322
Query: 298 HNGIPWVMTVAAGTMDREXXXXXXXXXXXXXXXXSLYPGNSSLID--FPIVFMDECLNLA 355
N PW+ TV AGT+DR+ SL+ G + L D P ++ N
Sbjct: 323 SNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEA-LPDKLLPFIYAGNASNAT 381
Query: 356 E--L--------KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDF--DGLEFFLQ 403
L +KV KIV+C D+ + Q ++ A+ G+ +++ +G E
Sbjct: 382 NGNLCMTGTLIPEKVKGKIVMC-DRGINARVQKGDVVKAAGGVGMILANTAANGEELVAD 440
Query: 404 SSF-PAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPF 462
+ PA + K GDI++ Y+ + N TA+I T +G KP+P VA++SSRGP+ P
Sbjct: 441 AHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPN 500
Query: 463 VLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHP 522
+LKPD++APG +ILAAW + S FN+ SGTSM+CP +G+AALL+ HP
Sbjct: 501 ILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHP 560
Query: 523 EWSPAAIRSAIMXXXXXXXXXXXXIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDAT 582
EWSPAAIRSA+M + DI KP+TP GAGH++P A +PGLIYD T
Sbjct: 561 EWSPAAIRSALMTTAYKTYKDGKPLLDIAT-GKPSTPFDHGAGHVSPTTATNPGLIYDLT 619
Query: 583 TEDYVSLLCALNLTMKRIQTITR-SYSVNCSTS-SL-DLNYPSFIAFFNANESKSVQEFQ 639
TEDY+ LCALN T +I++++R +Y+ + S S S+ DLNYPSF N + ++
Sbjct: 620 TEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAV--NV-DGVGAYKYT 676
Query: 640 RTVTNVGEGVSTYTASVTP-LKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVV 698
RTVT+VG G TY+ VT G SV+P L FK K+SY + + +
Sbjct: 677 RTVTSVG-GAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSN- 734
Query: 699 AFCYLSWIETGGKHVVKSPIVVT 721
+F + W + GKHVV SP+ ++
Sbjct: 735 SFGSIEWSD--GKHVVGSPVAIS 755
|
|
| TAIR|locus:2064696 AT2G05920 "AT2G05920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
Identities = 296/733 (40%), Positives = 400/733 (54%)
Query: 4 SAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTPAEL 63
S P++F H WY++ L S S LLYTY+ +GFSA L E
Sbjct: 37 SDKPESFLTHHDWYTSQLNS----------------ESSLLYTYTTSFHGFSAYLDSTEA 80
Query: 64 EALKSSPGYISSIRDLPVKP-HTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVWPE 122
++L SS I I + P+ HTT + +FLGLN + G + +IIGV+DTGVWPE
Sbjct: 81 DSLLSSSNSILDIFEDPLYTLHTTRTPEFLGLNSEFGVHDLGSSSNGVIIGVLDTGVWPE 140
Query: 123 SESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGL-LAKNPTITIAMNS- 180
S S++D M EIPS+WKGECESG+ F+S LCNKKLIGAR F+KG +A + S
Sbjct: 141 SRSFDDTDMPEIPSKWKGECESGSDFDSKLCNKKLIGARSFSKGFQMASGGGFSSKRESV 200
Query: 181 -PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSXXX 239
PRD +GHGTHTS+TAAGS V AS+ GYA GTA G A ARVA YK W+ G F S
Sbjct: 201 SPRDVDGHGTHTSTTAAGSAVRNASFLGYAAGTARGMATRARVATYKVCWSTGCFGSDIL 260
Query: 240 XXXXXXXXXGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHN 299
GVDVLS+SLG Y D +AI F+A+E+ +FVS SAGN GP ++ N
Sbjct: 261 AAMDRAILDGVDVLSLSLGGGSAPYYRDTIAIGAFSAMERGVFVSCSAGNSGPTRASVAN 320
Query: 300 GIPWVMTVAAGTMDREXXXXXXXXXXXXXXXXSLYPG-NSSLIDFPIVF-------MDEC 351
PWVMTV AGT+DR+ SLY G +V+ + C
Sbjct: 321 VAPWVMTVGAGTLDRDFPAFANLGNGKRLTGVSLYSGVGMGTKPLELVYNKGNSSSSNLC 380
Query: 352 L-NLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDF-DGLEFFLQSSF-PA 408
L + V KIVVC ++ + +++A G + + G E S PA
Sbjct: 381 LPGSLDSSIVRGKIVVCDRGVNARVEKGAVVRDAGGLGMIMANTAASGEELVADSHLLPA 440
Query: 409 VFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDV 468
+ + KTGD+L++Y+K ++ TA + F+ T L KP+P VA++SSRGP+ P +LKPDV
Sbjct: 441 IAVGKKTGDLLREYVKSDSKPTALLVFKGTVLDVKPSPVVAAFSSRGPNTVTPEILKPDV 500
Query: 469 MAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAA 528
+ PG +ILA W + + + + FN+ SGTSM+CP +G+A LL+ AHPEWSP+A
Sbjct: 501 IGPGVNILAGWSDAIGPTGLDKDSRRTQFNIMSGTSMSCPHISGLAGLLKAAHPEWSPSA 560
Query: 529 IRSAIMXXXXXXXXXXXXIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVS 588
I+SA+M + D D N + P A G+GH++P KAL PGL+YD +TE+Y+
Sbjct: 561 IKSALMTTAYVLDNTNAPLHDAAD-NSLSNPYAHGSGHVDPQKALSPGLVYDISTEEYIR 619
Query: 589 LLCALNLTMKRIQTITRSYSVNCSTSSLD---LNYPSFIAFFNANESKSVQEFQRTVTNV 645
LC+L+ T+ I I + SVNCS D LNYPSF F K V + R VTNV
Sbjct: 620 FLCSLDYTVDHIVAIVKRPSVNCSKKFSDPGQLNYPSFSVLFGG---KRVVRYTREVTNV 676
Query: 646 GEGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSW 705
G S Y +V SV P KL+FK K+ Y + + F ++W
Sbjct: 677 GAASSVYKVTVNGAPSVGISVKPSKLSFKSVGEKKRYTVTFVSKKGVSMTNKAEFGSITW 736
Query: 706 IETGGKHVVKSPI 718
+ +H V+SP+
Sbjct: 737 --SNPQHEVRSPV 747
|
|
| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 1.3e-126, Sum P(2) = 1.3e-126
Identities = 164/443 (37%), Positives = 226/443 (51%)
Query: 1 MDLSAMPKAFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTP 60
+D A P F WY+++L S++ S +++TY V +GFSA LT
Sbjct: 32 VDHEAKPSIFPTHFHWYTSSLASLTS------------SPPSIIHTYDTVFHGFSARLTS 79
Query: 61 AELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNP--KSGAWPVSKFGKDIIIGVVDTG 118
+ L P IS I + HTT S +FLGL K+G S FG D++IGV+DTG
Sbjct: 80 QDASQLLDHPHVISVIPEQVRHLHTTRSPEFLGLRSTDKAGLLEESDFGSDLVIGVIDTG 139
Query: 119 VWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTI--TI 176
VWPE S++D G+ +P +WKG+C + F S CN+KL+GARFF G A N + T
Sbjct: 140 VWPERPSFDDRGLGPVPIKWKGQCIASQDFPESACNRKLVGARFFCGGYEATNGKMNETT 199
Query: 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTS 236
SPRD++GHGTHT+S +AG YV AS GYA G A G AP AR+A YK WN G + S
Sbjct: 200 EFRSPRDSDGHGTHTASISAGRYVFPASTLGYAHGVAAGMAPKARLAAYKVCWNSGCYDS 259
Query: 237 XXXXXXXXXXXXGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT 296
GVDV+S+S+G V Y D +AI F AI++ IFVS SAGN GP T
Sbjct: 260 DILAAFDTAVADGVDVISLSVGGVVVPYYLDAIAIGAFGAIDRGIFVSASAGNGGPGALT 319
Query: 297 LHNGIPWVMTVAAGTMDREXXXXXXXXXXXXXXXXSLY--PGNSSLIDFPIVFMDE---- 350
+ N PW+ TV AGT+DR+ S+Y PG +P+V+
Sbjct: 320 VTNVAPWMTTVGAGTIDRDFPANVKLGNGKMISGVSVYGGPGLDPGRMYPLVYGGSLLGG 379
Query: 351 -------CLNLA-ELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD-FDGLEFF 401
CL + + V KIV+C +S + + + ++ G + + FDG
Sbjct: 380 DGYSSSLCLEGSLDPNLVKGKIVLCDRGINSRATKGEIVRKNGGLGMIIANGVFDGEGLV 439
Query: 402 LQSS-FPAVFMNSKTGDILKDYI 423
PA + + GD ++ YI
Sbjct: 440 ADCHVLPATSVGASGGDEIRRYI 462
|
|
| UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
Identities = 271/631 (42%), Positives = 355/631 (56%)
Query: 1 MDLSAMPKAFRGQHG-WYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLT 59
M SAMP + HG WY A+L+SVSG + K+LY Y VL+GFSA LT
Sbjct: 30 MAKSAMPAEYGDDHGEWYGASLRSVSG-------------AGKMLYAYDTVLHGFSARLT 76
Query: 60 PAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGV 119
E + + G ++ + + HTT + +FLG+ G +P S D+++GV+DTGV
Sbjct: 77 AREARDMAAMDGVLAVNPEARYELHTTRTPEFLGIAGNDGLFPQSGTAGDVVVGVLDTGV 136
Query: 120 WPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGL-LAKNPTITIAM 178
WPES SY+D G+ E+PS WKGEC +GT FNSS CN+KL+GARFFN+G A P T
Sbjct: 137 WPESRSYDDAGLGEVPSWWKGECMAGTGFNSSACNRKLVGARFFNRGYEAAMGPMDTTRE 196
Query: 179 N-SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSX 237
+ SPRD +GHGTHTSSTAAG+ V AS G+A GTA G AP ARVA+YK W G F+S
Sbjct: 197 SRSPRDDDGHGTHTSSTAAGAAVSGASLLGFASGTARGMAPRARVAVYKVCWLGGCFSSD 256
Query: 238 XXXXXXXXXXXGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL 297
G VLS+SLG D D VAI FAA+E+N+ VS SAGN GP TL
Sbjct: 257 ILAGMDAAVADGCGVLSLSLGGGAADYARDSVAIGAFAAMEQNVLVSCSAGNAGPGTSTL 316
Query: 298 HNGIPWVMTVAAGTMDREXXXXXXXXXXXXXXXXSLYPGNS-SLIDFPIVFMDECLN--L 354
N PW+ TV AGT+DR+ SLY G + PIV+ N
Sbjct: 317 SNVAPWITTVGAGTLDRDFPAYVSLGNGKNYTGVSLYAGKALPSTPLPIVYAANASNSTA 376
Query: 355 AEL--------KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDF--DGLEFFLQS 404
L +KV KIVVC D+ S Q + + G+ +S+ +G E +
Sbjct: 377 GNLCMPGTLTPEKVAGKIVVC-DRGVSARVQKGFVVRDAGGAGMVLSNTATNGEELVADA 435
Query: 405 SF-PAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFV 463
PA + +K G +K Y+ + + TATI T++ +P+P VA++SSRGP++ P +
Sbjct: 436 HLLPAAGVGAKEGAAIKAYVASDPSPTATIVVAGTQVDVRPSPVVAAFSSRGPNMLTPEI 495
Query: 464 LKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPE 523
LKPD++APG +ILAAW + + FN+ SGTSM+CP +G+AALLR AHPE
Sbjct: 496 LKPDIIAPGVNILAAWTGKAGPTGIAADTRRVAFNIISGTSMSCPHVSGLAALLRSAHPE 555
Query: 524 WSPAAIRSAIMXXXXXXXXXXXXIKDIGD--DNKPATPIAMGAGHINPDKALDPGLIYDA 581
WSPAA+RSA+M + D PATP GAGH++P A+DPGL+YD
Sbjct: 556 WSPAAVRSALMTTAYSTYAGAGDANPLLDAATGAPATPFDYGAGHVDPASAVDPGLVYDL 615
Query: 582 TTEDYVSLLCALNLTMKRIQTITRSYSVNCS 612
T DYV LCALN T I + RS S C+
Sbjct: 616 GTADYVDFLCALNYTSTMIAAVARSKSYGCT 646
|
|
| UNIPROTKB|Q8LSS2 OSJNBa0011L09.20 "Subtilisin N-terminal Region family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 154/406 (37%), Positives = 208/406 (51%)
Query: 43 LLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWP 102
LLY+YS +GF+A+L P L L++SPG + + D HTT + +FLGL +
Sbjct: 65 LLYSYSAAAHGFAAALLPHHLPLLRASPGVLQVVPDEVFDLHTTRTPEFLGLLSPAYQPA 124
Query: 103 VSKFGK---DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
+ F D++IGV+DTGVWPES S+ G + P+RWKG CE+G F+ S+C +KL+G
Sbjct: 125 IHGFEAATHDVVIGVLDTGVWPESPSFAGGDLPPPPARWKGVCEAGVDFSPSVCGRKLVG 184
Query: 160 ARFFNKGLLAKNP---------TITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAI 210
AR F++GL A N S RD +GHGTHT++TAAG+ V AS GYA
Sbjct: 185 ARSFSRGLRAANGGGGGGARGGVGRKGFVSARDRDGHGTHTATTAAGAVVANASLLGYAT 244
Query: 211 GTALGTAPLARVAMYKALWNEGSFTSXXXXXXXXXXXXGVDVLSMSLGLDGVDLYEDPVA 270
GTA G AP ARVA YK W EG S GV VLS+SLG + D VA
Sbjct: 245 GTARGMAPGARVAAYKVCWPEGCLGSDILAGIDAAVADGVGVLSLSLGGGSAPYFRDTVA 304
Query: 271 IATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDREXXXXXXXXXXXXXXX 330
+ F A +FV+ SAGN GP T+ N PWV TV AGT+DR+
Sbjct: 305 VGAFGAAAAGVFVACSAGNSGPSGATVANSAPWVATVGAGTLDRDFPAYVTLPTGARLAG 364
Query: 331 XSLYPGNSSL---IDFPIVFM---DE----CL-NLAELKKVGQKIVVCQDKNDSLSNQVD 379
SLY G S P+V+ D CL + V KIV+C D+ + +
Sbjct: 365 VSLYAGPSPSPRPAMLPLVYGGGGDNASRLCLPGTLDPAAVRGKIVLC-DRGVNARVEKG 423
Query: 380 NIQNASVSGGVFISDF--DGLEFFLQSSF-PAVFMNSKTGDILKDY 422
+ A+ G+ +++ G E S PAV + GD +++Y
Sbjct: 424 AVVKAAGGAGMVLANTAASGEELVADSHLLPAVAVGKLAGDKIREY 469
|
|
| TAIR|locus:2025457 SBTI1.1 "AT1G01900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
Identities = 276/708 (38%), Positives = 389/708 (54%)
Query: 36 NNISSSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLN 95
++ S ++ Y Y + ++GFSA+LT +L+ +K++ G+IS+ D + HTT+S +FLGL
Sbjct: 72 DDFSLPEIHYIYENAMSGFSATLTDDQLDTVKNTKGFISAYPDELLSLHTTYSHEFLGLE 131
Query: 96 PKSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNK 155
G W + D+IIG+VDTG+ PE S+ D MT +PSRW+G C+ GT F+SS CNK
Sbjct: 132 FGIGLWNETSLSSDVIIGLVDTGISPEHVSFRDTHMTPVPSRWRGSCDEGTNFSSSECNK 191
Query: 156 KLIGARFFNKGL--LAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTA 213
K+IGA F KG + T S RDA GHGTHT+STAAG V +A+YFG A G A
Sbjct: 192 KIIGASAFYKGYESIVGKINETTDFRSTRDAQGHGTHTASTAAGDIVPKANYFGQAKGLA 251
Query: 214 LGTAPLARVAMYKALWNEGSFTSXXXXXXXXXXXXGVDVLSMSLGLDGVDLYEDPVAIAT 273
G +R+A YKA W G ++ GVDV+S+SLG Y DP+AIA
Sbjct: 252 SGMRFTSRIAAYKACWALGCASTDVIAAIDRAILDGVDVISLSLGGSSRPFYVDPIAIAG 311
Query: 274 FAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDREXXXXXXXXXXXXXXXXSL 333
F A++KNIFVS SAGN GP T+ NG PW+MTVAA DR SL
Sbjct: 312 FGAMQKNIFVSCSAGNSGPTASTVSNGAPWLMTVAASYTDRTFPAIVRIGNRKSLVGSSL 371
Query: 334 YPGNSSLIDFPIVFM----DE-----CLNLAELKK--VGQKIVVCQDKNDSLSNQVDNIQ 382
Y G S L + P+ F +E C+ LK+ V KIV+C + + + ++
Sbjct: 372 YKGKS-LKNLPLAFNRTAGEESGAVFCIR-DSLKRELVEGKIVICLRGASGRTAKGEEVK 429
Query: 383 NASVSGGVFIS-DFDGLEFFLQSS-FPAVFMNSKTGDILKDYIKIENNATATIQFQKTEL 440
+ + + +S + +G E PAV + G L +Y+ NATA+++F+ T
Sbjct: 430 RSGGAAMLLVSTEAEGEELLADPHVLPAVSLGFSDGKTLLNYLAGAANATASVRFRGTAY 489
Query: 441 GTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQ 500
G AP VA++SSRGPS++ P + KPD+ APG +ILA W + S S FN+
Sbjct: 490 GAT-APMVAAFSSRGPSVAGPEIAKPDIAAPGLNILAGWSPFSSPSLLRSDPRRVQFNII 548
Query: 501 SGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMXXXXXXXXXXXXIKDIG--DDNKPAT 558
SGTSMACP +GIAAL++ H +WSPA I+SAIM I D G AT
Sbjct: 549 SGTSMACPHISGIAALIKSVHGDWSPAMIKSAIMTTARITDNRNRPIGDRGAAGAESAAT 608
Query: 559 PIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQTITRSYSVNCSTSSL-- 616
A GAG+++P +A+DPGL+YD +T DY++ LC+LN T +RI + + + C+++++
Sbjct: 609 AFAFGAGNVDPTRAVDPGLVYDTSTVDYLNYLCSLNYTSERILLFSGT-NYTCASNAVVL 667
Query: 617 ---DLNYPSFIAFFNANESKSVQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLTF 673
DLNYPSF + ++RTVTNVG Y V KG V+P L F
Sbjct: 668 SPGDLNYPSFAVNLVNGANLKTVRYKRTVTNVGSPTCEYMVHVEEPKGVKVRVEPKVLKF 727
Query: 674 KGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVVKSPIVVT 721
+ + SY + + + + +F L WI K+ V+SPI VT
Sbjct: 728 QKARERLSYTVTYDAEASRNSSSS-SFGVLVWI--CDKYNVRSPIAVT 772
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 729 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-108 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-28 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 4e-26 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-24 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 9e-21 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 1e-18 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-16 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 4e-16 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 1e-15 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-14 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 5e-14 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 6e-14 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 6e-14 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 8e-14 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 3e-12 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 3e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 4e-12 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 4e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 6e-12 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-11 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 3e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-11 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 5e-11 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 7e-11 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-10 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 3e-10 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 5e-10 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 6e-10 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-09 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 5e-09 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 7e-09 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 8e-09 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-08 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 3e-08 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 3e-08 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 1e-07 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 4e-07 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 5e-07 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-06 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 7e-06 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 1e-05 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-05 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 2e-05 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 3e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 8e-05 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 8e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 1e-04 | |
| TIGR03895 | 602 | TIGR03895, protease_PatA, cyanobactin maturation p | 1e-04 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 3e-04 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 8e-04 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 8e-04 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 331 bits (850), Expect = e-108
Identities = 123/236 (52%), Positives = 148/236 (62%), Gaps = 4/236 (1%)
Query: 81 VKPHTTHSSQFLGLNPKSG--AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRW 138
+ HTT S FLGL G + G+ IIIGV+DTG+WPE S+ D G P W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 139 KGECESGTQFNSSLCNKKLIGARFFNKGLLAKNP-TITIAMNSPRDANGHGTHTSSTAAG 197
G+C +G FN CN KLIGAR+F+ G A SPRD +GHGTHT+STAAG
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 198 SYVERASYFGYAIGTALGTAPLARVAMYKALWNE-GSFTSDIIAAIDQAIIDGVDVLSMS 256
+ V AS G+A GTA G AP AR+A+YK W + G F SDI+AAIDQAI DGVDV+S S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180
Query: 257 LGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTM 312
+G D YEDP+AIA A+E IFV+ SAGN GP T+ N PWV TVAA T+
Sbjct: 181 IGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-28
Identities = 40/75 (53%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 464 LKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPE 523
LKPD+ APG ILAAW +F SGTSMA P AG+AALL+ AHP+
Sbjct: 236 LKPDIAAPGVDILAAWTPE---GADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 524 WSPAAIRSAIMTTSD 538
WSPAAI+SA+MTT+
Sbjct: 293 WSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-26
Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 21/131 (16%)
Query: 442 TKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQS 501
A +V SSRGP S +KPD++APG I++ P S + + S
Sbjct: 186 VAEADTVGPSSSRGPPTS-DSAIKPDIVAPGVDIMSTAPG-----------SGTGYARMS 233
Query: 502 GTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIA 561
GTSMA P AG AALL+ AHP+WSPA I++A+M T+ D
Sbjct: 234 GTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAK---------PLYDSDGVVYPVSR 284
Query: 562 MGAGHINPDKA 572
GAG ++ +A
Sbjct: 285 QGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 70/215 (32%), Positives = 98/215 (45%), Gaps = 41/215 (19%)
Query: 107 GKDIIIGVVDTGVWPESESYND---GGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFF 163
GK + + V+DTG+ Y GG + KG G F
Sbjct: 1 GKGVKVAVIDTGI-----DYTHPDLGGPGFPNDKVKG------------------GYDFV 37
Query: 164 ---NKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLA 220
+ + + S DA GHGTH + AG G +GT G AP A
Sbjct: 38 DDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAG--------NGVNVGTIKGVAPKA 89
Query: 221 RVAMYKALWNEGSFTSD-IIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEK 279
+ YK L GS T+D IIAAI+QA+ DG+DV+++SLG V+ +DP AIA A++
Sbjct: 90 DLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLG-SSVNGPDDPDAIAINNAVKA 148
Query: 280 NIFVSTSAGNQGPFIGTLHN--GIPWVMTVAAGTM 312
+ V +AGN GP T+ + P +TV A T+
Sbjct: 149 GVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTV 183
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 91.9 bits (228), Expect = 9e-21
Identities = 56/207 (27%), Positives = 77/207 (37%), Gaps = 46/207 (22%)
Query: 110 IIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLA 169
+ + V+DTGV P+ + + E+G
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGNDDDDNENGPT---------------------- 38
Query: 170 KNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALW 229
P D NGHGTH + A S G +G AP A++ K L
Sbjct: 39 ----------DPDDGNGHGTHVAGIIAASANN---------GGGVGVAPGAKLIPVKVLD 79
Query: 230 NEGSFT-SDIIAAIDQAIID-GVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSA 287
+GS + SDI AAID A D G DV+++SLG G +A + + V +A
Sbjct: 80 GDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALAKLGVLVVAAA 139
Query: 288 GNQGPFIGTLHN---GIPWVMTVAAGT 311
GN GP GT P V+ V A
Sbjct: 140 GNDGPDGGTNIGYPAASPNVIAVGAVD 166
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 1e-18
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 22/133 (16%)
Query: 447 SVAS----YSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSG 502
+VAS +SS GP+ LKPDV APG +IL+ +P L+ + + SG
Sbjct: 183 AVASVDSYFSSWGPTNE--LYLKPDVAAPGGNILSTYP-----------LAGGGYAVLSG 229
Query: 503 TSMACPQAAGIAALLRGA-HPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIA 561
TSMA P AG AALL A H + SPA +R + +T+ ++ A
Sbjct: 230 TSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPD----LAPVAQ 285
Query: 562 MGAGHINPDKALD 574
GAG +N KAL
Sbjct: 286 QGAGLVNAYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 61/227 (26%), Positives = 86/227 (37%), Gaps = 58/227 (25%)
Query: 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKG 166
GK I + V+DTG+ + + + A F N
Sbjct: 1 GKGITVAVLDTGIDAP--------------------------HPDFDGRIIRFADFVNTV 34
Query: 167 LLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYA-IGTALGTAPLARVAMY 225
P D NGHGTH + AGS G A G G AP A +
Sbjct: 35 NGRTTPY---------DDNGHGTHVAGIIAGS--------GRASNGKYKGVAPGANLVGV 77
Query: 226 KALWNEGSFT-SDIIAAIDQAIID-----GVDVLSMSLG-LDGVDLYEDPVAIATFAAIE 278
K L + GS + SDIIA ID +++ + V+++SLG EDP+ A +
Sbjct: 78 KVLDDSGSGSESDIIAGIDW-VVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWD 136
Query: 279 KNIFVSTSAGNQGPFIGTLHNGIP----WVMTVAAGTMDRELGATLT 321
I V +AGN GP GT+ P V+TV A + ++
Sbjct: 137 AGIVVVVAAGNSGPGPGTI--TSPGNSPKVITVGAVDDNGPHDDGIS 181
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-16
Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 319 TLTLGNGNTVTGLSLYPGNSSLIDFPIVFM---------DECLNLAEL-KKVGQKIVVCQ 368
+TLGNG T+ G SLYPGN L +P+V+ CL + KV KIV+C
Sbjct: 1 VVTLGNGKTIVGQSLYPGN--LKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCD 58
Query: 369 D-KNDSLSNQVDNIQNASVSGGVFISD-FDGLEFFLQS-SFPAVFMNSKTGDILKDYIKI 425
N S + D ++ A +G + +D DGL+ + PAV ++ + G + YI
Sbjct: 59 RGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINS 118
Query: 426 ENNATATI 433
+N TATI
Sbjct: 119 TSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 448 VASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMAC 507
+A +S+ G + KPD++APG +IL++ P ++ SGTSMA
Sbjct: 177 IADFSNYGGPVDGI---KPDIVAPGGNILSSGPGGDL----------GGYDSHSGTSMAA 223
Query: 508 PQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSD 546
P AG AALL A+P +P +R+ ++TT+ + D
Sbjct: 224 PLVAGAAALLLSANPSLTPETLRALLVTTATDLGSMGLD 262
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 443 KPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSG 502
++ +SSRGP+ +KPDV+APG++I++ F SG
Sbjct: 175 PHDDGISYFSSRGPTGDG--RIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFE----MSG 228
Query: 503 TSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538
TSMA P +G ALL A+P +P ++ + T+
Sbjct: 229 TSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 5e-14
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 30/143 (20%)
Query: 440 LGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNL 499
+ ++ +SS GP+ LKPD+ APG +I + N +
Sbjct: 226 VPNPNGGQMSGFSSWGPTPD--LDLKPDITAPGGNIYSTVNDN-------------TYGY 270
Query: 500 QSGTSMACPQAAGIAALLRGA----HPEWSPA----AIRSAIMTTSDSTDNTNSDIKDIG 551
SGTSMA P AG +AL++ +P+ S +++ +M T+ D
Sbjct: 271 MSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPL-------DSE 323
Query: 552 DDNKPATPIAMGAGHINPDKALD 574
D +P GAG I+ KA+
Sbjct: 324 DTKTYYSPRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 6e-14
Identities = 55/191 (28%), Positives = 77/191 (40%), Gaps = 41/191 (21%)
Query: 106 FGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFF-- 163
GK + + VVDTG+ Y + G C G K+ G F
Sbjct: 11 TGKGVKVAVVDTGID-----YTHPAL--------GGC-FGPGC-------KVAGGYDFVG 49
Query: 164 --NKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLAR 221
G P + P D GHGTH + A + + +G+ G AP A
Sbjct: 50 DDYDGTNPPVPD-----DDPMDCQGHGTHVAGIIAAN----PNAYGF-----TGVAPEAT 95
Query: 222 VAMYKALWNEGSFTSD-IIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKN 280
+ Y+ GS T D IIAA +A DG DV++ SLG EDP A+ ++
Sbjct: 96 LGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS-GWSEDPWAVVASRIVDAG 154
Query: 281 IFVSTSAGNQG 291
+ V+ +AGN G
Sbjct: 155 VVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 6e-14
Identities = 53/170 (31%), Positives = 72/170 (42%), Gaps = 24/170 (14%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FTSD 237
N +D NGHGTH + A +G +G AP A + K L ++GS SD
Sbjct: 34 NDYQDGNGHGTHVAGIIAAL--------DNGVGV-VGVAPEADLYAVKVLNDDGSGTYSD 84
Query: 238 IIAAIDQAIIDGVDVLSMSLGLDGVD--LYEDPVAIATFAAIEKNIFVSTSAGNQGP--F 293
IIA I+ AI +G+D+++MSLG L E AI A I V +AGN G
Sbjct: 85 IIAGIEWAIENGMDIINMSLGGPSDSPALRE---AIK--KAYAAGILVVAAAGNSGNGDS 139
Query: 294 IGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTG-----LSLYPGNS 338
P V+ V A + + + G + LS YP N
Sbjct: 140 SYDYPAKYPSVIAVGAVDSNNNRASFSSTGPEVELAAPGVDILSTYPNND 189
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 8e-14
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+SS GP + ++ APG IL+ +P+N ++ SGTSMA P
Sbjct: 163 ASFSSTGPEV--------ELAAPGVDILSTYPNN-------------DYAYLSGTSMATP 201
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAIMTT 536
AG+AAL+ PE + A +R A+ T
Sbjct: 202 HVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 3e-12
Identities = 43/123 (34%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 172 PTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNE 231
I+ DA GHGTH S T G G A G +G AP A + K L +
Sbjct: 30 ENRRISATEVFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVLDDG 80
Query: 232 GSFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVA--IATFAAIEKNIFVSTSAGN 289
G S IIA ++ A+ DV+SMSLG EDP+ + + +FV SAGN
Sbjct: 81 GGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAVEALSNQTGALFVV-SAGN 137
Query: 290 QGP 292
+G
Sbjct: 138 EGH 140
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 3e-12
Identities = 36/108 (33%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 431 ATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNS 490
A + + + S AS S S KPDV APG + +A Q
Sbjct: 157 AVDRDDEDAWFSSFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGANGDGQYTR 215
Query: 491 KLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538
SGTSMA P AG+AALL AHP+ SP I+ A+ T+
Sbjct: 216 L---------SGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 4e-12
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 447 SVASYSSRG--PSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTS 504
+V + G S S D+ APG IL++ + + SGTS
Sbjct: 161 AVGAVDRDGTPASPSSNGGAGVDIAAPGGDILSSPTTGG-----------GGYATLSGTS 209
Query: 505 MACPQAAGIAALLRGAHPEWSPAAIRSAIMTT 536
MA P AG+AALL A+P+ +PA +++A+++T
Sbjct: 210 MAAPIVAGVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 448 VASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMAC 507
VAS+SSRGP+ +KPD++APG IL S + S S + +SGTSMA
Sbjct: 201 VASFSSRGPTY--DGRIKPDLVAPGTGIL----SARSGGGGIGDTSDSAYTSKSGTSMAT 254
Query: 508 PQAAGIAALLR 518
P AG AALLR
Sbjct: 255 PLVAGAAALLR 265
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 6e-12
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWN---EGSFTSDII 239
D + HG H + AG+ E + G I G AP A++ K N ++
Sbjct: 80 DGSSHGMHVAGIVAGNGDEEDN--GEGI---KGVAPEAQLLAMKVFSNPEGGSTYDDAYA 134
Query: 240 AAIDQAIIDGVDVLSMSLGLD-GVDLYEDPVAIATFAAIEKNIFVSTSAGNQG 291
AI+ A+ G DV++MSLG G +DP A A E + V +AGN G
Sbjct: 135 KAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 19/87 (21%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+ AS+S+ G + D+ APG IL+AW S + SGTSMA
Sbjct: 182 ARASFSNYGSCV--------DIFAPGVDILSAWIG-----------SDTATATLSGTSMA 222
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAI 533
P AG+AA L P+ SPA +++ +
Sbjct: 223 APHVAGLAAYLLSLGPDLSPAEVKARL 249
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 41/141 (29%), Positives = 54/141 (38%), Gaps = 21/141 (14%)
Query: 164 NKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVA 223
G K T +N D GHGT + A A G G AP +
Sbjct: 32 KGGYDGKEAGETGDINDIVDKLGHGTAVAGQIA------------ANGNIKGVAPGIGIV 79
Query: 224 MYKAL-WNEGSFTSDIIAAIDQAIIDGVDVLSMSLG----LDGVDLYEDPVAIATFAAIE 278
Y+ + +S II AI A DGVDV+++SLG + G +D A AI
Sbjct: 80 SYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAIN 139
Query: 279 ----KNIFVSTSAGNQGPFIG 295
K V +AGN G +
Sbjct: 140 YAKSKGSIVVAAAGNDGLDVS 160
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 15/78 (19%)
Query: 448 VASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMAC 507
+A +SSRGPS +KPD+ APG +I +A P + SGTSMA
Sbjct: 187 LADFSSRGPSTYGR--IKPDISAPGVNIRSAVPGGG-------------YGSSSGTSMAA 231
Query: 508 PQAAGIAALLRGAHPEWS 525
P AG+AALL A+P
Sbjct: 232 PHVAGVAALLWSANPSLI 249
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D+ APG IL+ P + SGTSMA P AG AALL +P +
Sbjct: 201 DLAAPGVDILSTSPGG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTA 247
Query: 527 AAIRSAIMTTSD 538
A I+ AI++++D
Sbjct: 248 AQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 7e-11
Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FTSD 237
N P D NGHGTH + IG A G A ++ K L +GS TSD
Sbjct: 57 NDPMDDNGHGTHVAGIIGAV-------GNNGIGIA-GVAWNVKIMPLKFLGADGSGTTSD 108
Query: 238 IIAAIDQAIIDGVDVLSMSLGLDGVD-LYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT 296
I AID A+ G +++ S G G D AIA AI+ I +AGN G
Sbjct: 109 AIKAIDYAVDMGAKIINNSWGGGGPSQALRD--AIA--RAIDAGILFVAAAGNDGTNNDK 164
Query: 297 LH-----NGIPWVMTVAA 309
+ +++VAA
Sbjct: 165 TPTYPASYDLDNIISVAA 182
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 58/245 (23%), Positives = 87/245 (35%), Gaps = 55/245 (22%)
Query: 99 GAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLI 158
AW ++ G + + VVDTGV + ++ K ++
Sbjct: 20 KAWDITG-GSGVTVAVVDTGV-----DPTHPDLLKV--------------------KFVL 53
Query: 159 GARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAP 218
G F + + D NGHGTH + A + G A G AP
Sbjct: 54 GYDFVDND------------SDAMDDNGHGTHVAGIIAAAT-------NNGTGVA-GVAP 93
Query: 219 LARVAMYKALWNEGSFT-SDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAI 277
A++ K L GS + +DI I A G V+++SL G L + A A
Sbjct: 94 KAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSL---GGGLGSTALQEAINYAW 150
Query: 278 EKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTG-----LS 332
K + V +AGN+G + P + VAA D + + G V+ LS
Sbjct: 151 NKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDDKRASFSNYGKWVDVSAPGGGILS 210
Query: 333 LYPGN 337
P
Sbjct: 211 TTPDG 215
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 22/90 (24%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACP 508
AS+S+ G + DV APG IL+ P ++ SGTSMA P
Sbjct: 190 ASFSNYGKWV--------DVSAPGGGILSTTPDG-------------DYAYMSGTSMATP 228
Query: 509 QAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538
AG+AALL P S + +R A+ T+D
Sbjct: 229 HVAGVAALLYSQGP-LSASEVRDALKKTAD 257
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSD-I 238
+D +GHGTH + T G V G G A A +A+ + +G I
Sbjct: 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGI 91
Query: 239 IAAIDQAIIDGVDVLSMSLGLD--GVDLYEDPVAIATFAAIEK 279
+A I A+ +G DV+SMSLG D G+ P +A A+E
Sbjct: 92 LAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEA 134
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-10
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 32 TNIFNNISSSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPH 84
+ + + +LY+Y H NGF+A LT E E L+ P D V+ H
Sbjct: 24 ASSKEEAAGASILYSYKHGFNGFAAKLTEEEAEKLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 444 PAPSVASYSSRGPSISCPFVL-KPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSG 502
S R P+ P V KPDV AP D + N V NF G
Sbjct: 171 TPSSFDPVGIRLPT---PEVRQKPDVTAP-DGV------NGTVDGDGD--GPPNF---FG 215
Query: 503 TSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAM 562
TS A P AAG+AAL+ A+P +PA IR A+ +T+ D+ + G DN A
Sbjct: 216 TSAAAPHAAGVAALVLSANPGLTPADIRDALRSTAL-------DMGEPGYDN------AS 262
Query: 563 GAGHINPDKALD 574
G+G ++ D+A+
Sbjct: 263 GSGLVDADRAVA 274
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 21/94 (22%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
S+A +S RGP+ +KPD+ APG +IL A P ++ SGTS+A
Sbjct: 358 SIAIFSGRGPTRDG--RIKPDIAAPGVNILTASPGG----GYTTR---------SGTSVA 402
Query: 507 CPQAAGIAALL------RGAHPEWSPAAIRSAIM 534
AG ALL RG P I++ ++
Sbjct: 403 AAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLI 436
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 448 VASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMAC 507
AS+SS GP+ LKPDVMA G I N +GTS +C
Sbjct: 186 KASFSSIGPTADGR--LKPDVMALGTGIYVI-------------NGDGNITYANGTSFSC 230
Query: 508 PQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538
P AG+ A L AHP W+ I+ AI+ ++
Sbjct: 231 PLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 7e-09
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSI--LAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
ASYS+ G + D++APG I + SFS GTS A
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFS------GTSFA 212
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTS 537
P AAG+AAL+ A+P +PA + I+T++
Sbjct: 213 SPVAAGVAALILSANPNLTPAEVED-ILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 449 ASYSSRGPSISCPFVLKPDVMAPGDSILA-AWPSNLAVSQ--TNSKLSFSNFNLQSGTSM 505
ASYS+ GP++ DV APG + S T S + LQ GTSM
Sbjct: 204 ASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQ-GTSM 254
Query: 506 ACPQAAGIAALLRGAHPEWSPAAIRSAIMTT 536
A P AG+AAL++ +P +PA I S + +T
Sbjct: 255 AAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 51/214 (23%), Positives = 76/214 (35%), Gaps = 51/214 (23%)
Query: 107 GKDIIIGVVDTGVWPESESY------NDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGA 160
GK +++G++DTG+ Y N+ G T I W G G
Sbjct: 3 GKGVLVGIIDTGI-----DYLHPEFRNEDGTTRILYIWDQTIPGGPP------PGGYYGG 51
Query: 161 RFFNK-GLLAKNPTITIAMNSP-RDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAP 218
+ + + A + P RD NGHGTH + AAG+ G G AP
Sbjct: 52 GEYTEEIINAALASDNPYDIVPSRDENGHGTHVAGIAAGN--------GDNNPDFKGVAP 103
Query: 219 LAR---VAMYKALWNEGSFTSDIIAAIDQAIIDGVD-------------VLSMSLGL--- 259
A V + +A F D+ + I+ + V+++SLG
Sbjct: 104 EAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFG 163
Query: 260 --DGVDLYEDPVAIATFAAIEKNIFVSTSAGNQG 291
DG L E I + + V AGN+G
Sbjct: 164 SHDGTSLLER--YIDAISRLRGIAVV-VGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 17/136 (12%)
Query: 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAI 242
D NGHGTH + A + G A A++ K L G S++ AI
Sbjct: 43 DNNGHGTHVAGIIAAGDNNGSGGVGVAPN--------AKLESVKVLPGSGGTDSELAGAI 94
Query: 243 DQAII--DGVDVLSMSLGLDG---VDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL 297
+ A + + V++MSLG +A A K +AGN G +
Sbjct: 95 EWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYADNN 154
Query: 298 HNGIP---W-VMTVAA 309
P ++TV A
Sbjct: 155 PVSDPASANNIITVGA 170
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 3e-08
Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 24/119 (20%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFT-SD 237
+ D NGHGTH + T G G A A + K L GS T S
Sbjct: 57 DPDSDCNGHGTHVAGTVGGKTY--------------GVAKKANLVAVKVLDCNGSGTLSG 102
Query: 238 IIAAIDQAIIDGVD-----VLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQG 291
IIA ++ D V +MSLG + VA AA+ + V +AGN
Sbjct: 103 IIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVA----AAVNAGVVVVVAAGNSN 157
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 441 GTKPAPSVASYSSRGPSISCPFVLKPDVMAPG-----DSILAAWPSNLAVSQTNSKLSFS 495
+ +S GP P KPDV+A G D A +L++ T S S
Sbjct: 191 SAVGPAPAGATTSSGPGSPGPI--KPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGG 248
Query: 496 NFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIR 530
F GTS A P AA +AA L PE SP IR
Sbjct: 249 GFVTVGGTSFAAPLAARLAAGLFAELPELSPETIR 283
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSD 237
+ D GHGT + A S + LG AP A + +++ N S+TS
Sbjct: 39 KTLDDGLGHGTFVAGVIASSREQ-----------CLGFAPDAEIYIFRVFTNNQVSYTSW 87
Query: 238 IIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL 297
+ A + AI+ +DVL++S+G G D + P + NI + ++ GN GP GTL
Sbjct: 88 FLDAFNYAILTKIDVLNLSIG--GPDFMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTL 145
Query: 298 HN 299
+N
Sbjct: 146 NN 147
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 37/139 (26%)
Query: 444 PA--PSVASYSSRGP-------SISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSF 494
PA P V + S S+ P+V D+ APG++I++ P
Sbjct: 172 PAWYPGVLAVGSIDRDGTPSSFSLPGPWV---DLAAPGENIVSLSPGG------------ 216
Query: 495 SNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDN 554
SGTS A P +G AAL+R P+ + A +R I T+D G D+
Sbjct: 217 DGLATTSGTSFAAPFVSGTAALVRSRFPDLTAAQVRRRIEATAD-------HPARGGRDD 269
Query: 555 KPATPIAMGAGHINPDKAL 573
+G G ++P AL
Sbjct: 270 ------YVGYGVVDPVAAL 282
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 44/148 (29%), Positives = 54/148 (36%), Gaps = 30/148 (20%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDI 238
P D NGHGTHT T G+ G +G AP AR +AL G +D
Sbjct: 46 PLPYDDNGHGTHTMGTMVGNDG---------DGQQIGVAPGARWIACRALDRNGGNDADY 96
Query: 239 IAAIDQAI----IDGV--------DVLSMSLGLDGVD--LYEDPVAIATFAAIEKNIFVS 284
+ + G DV++ S G D + VA A AA IF
Sbjct: 97 LRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVA-AWRAA---GIFPV 152
Query: 285 TSAGNQGPFIGTL--HNGI-PWVMTVAA 309
+AGN GP TL P V A
Sbjct: 153 FAAGNDGPRCSTLNAPPANYPESFAVGA 180
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 441 GTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQ 500
+ V S+SSRGPSI+ KPD+ A G A + + +F F
Sbjct: 214 LPGGSGDVVSWSSRGPSIAG--DPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLF--- 268
Query: 501 SGTSMACPQAAGIAALLRGAHPE------WSPAAIRSAIMTTS 537
GTSMA P AG AAL+ A E + P +R+ +M+T+
Sbjct: 269 GGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.0 bits (113), Expect = 1e-05
Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 16/159 (10%)
Query: 444 PAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGT 503
+ +VAS+S+ G + + P V S + P + A T S GT
Sbjct: 314 LSDTVASFSNDGSP-TGVDIAAPGVNILSLSAVNTLPGDGADYVTLS-----------GT 361
Query: 504 SMACPQAAGIAALLRGAHP-EWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDN---KPATP 559
SMA P +G+AAL+ A+P E +PA +R+ I+TT+ T + D G AT
Sbjct: 362 SMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAATD 421
Query: 560 IAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMK 598
+A G N + + T L
Sbjct: 422 VAGGTLPANGTGSSQGAVEAPGTLALLTPALGGTVPAAV 460
|
Length = 508 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 17/92 (18%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPG-DSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSM 505
+ AS+S+ G + D+ APG +IL+ P N+ SGTSM
Sbjct: 197 NKASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGG-------GNYEYLSGTSM 241
Query: 506 ACPQAAGIAALLRGAHP-EWSPAAIRSAIMTT 536
A P +G+AAL+ P ++P IR + +
Sbjct: 242 AAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 19/92 (20%)
Query: 466 PDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWS 525
D+ APG I++A P + SGTSMA P AG+AAL A P+
Sbjct: 213 VDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAG 259
Query: 526 PAAIRSAIM------TTSDSTDNTNSDIKDIG 551
A+ + + T+ + + +G
Sbjct: 260 GRALAALLQARLTAARTTQFAPGLDLPDRGVG 291
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 27/104 (25%)
Query: 443 KPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQS- 501
K + ++SSRGP+ L + APG +I S N+ LQ
Sbjct: 324 KLPGNQYTWSSRGPTADGA--LGVSISAPGGAIA----------------SVPNWTLQGS 365
Query: 502 ----GTSMACPQAAG-IAALLRGAHPE---WSPAAIRSAIMTTS 537
GTSM+ P A G IA LL G E ++P ++R A+ T+
Sbjct: 366 QLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTA 409
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 468 VMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPA 527
+ APG++I + P + + SGTS A P +G AALL P +
Sbjct: 208 LAAPGENIYSTDPD-----------GGNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 528 AIRSAIMTTSD 538
+R ++TT+
Sbjct: 257 QVRQTLLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.3 bits (106), Expect = 8e-05
Identities = 41/161 (25%), Positives = 60/161 (37%), Gaps = 18/161 (11%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG--SFTS 236
D NGHGTH + T A + + G AP A++ + K L + G S
Sbjct: 177 PPFLDDNGHGTHVAGTIAAVIFDNGAGV-------AGVAPGAKLLLVKVLGSGGGSGELS 229
Query: 237 DIIAAIDQAIIDG--VDVLSMSLGLDGVDLYEDPVAIAT-FAAIEKNIFVSTSAGNQGPF 293
D+ I+ A G DV+++SLG D + A AA + + +AGN G
Sbjct: 230 DVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGS- 288
Query: 294 IGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLY 334
N + A + A L +TV S
Sbjct: 289 -----NASGGDLAYPASYPAPNVIAVGALDLSDTVASFSND 324
|
Length = 508 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
DV APG+ I + P N + SGTSMA P +G+AAL+ +P +
Sbjct: 233 DVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTA 279
Query: 527 AAIRSAIMTTS 537
++ I+ +
Sbjct: 280 KEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 38/132 (28%), Positives = 52/132 (39%), Gaps = 19/132 (14%)
Query: 183 DANGHGTHTSSTAAG-SYVERASYFGYAIGTAL-GTAPLARVAMYKALWNEGSFTS---- 236
D HGT +S AAG +E Y GY + G AP A++A KALW +
Sbjct: 54 DFFSHGTSCASVAAGRGKMEYNLY-GYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWT 112
Query: 237 ---DIIAAIDQAIIDG---VDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVST----- 285
D + I G VDV+S S G+ + + + + T
Sbjct: 113 AGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIV 172
Query: 286 -SAGNQGPFIGT 296
+AGN GP GT
Sbjct: 173 SAAGNGGPGYGT 184
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease, PatA/PatG family | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 21/80 (26%)
Query: 468 VMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL------RGAH 521
++APG++IL A P V SGTS A P G+AALL +G
Sbjct: 138 ILAPGENILGAQPGGETVRL-------------SGTSFATPVVTGVAALLLSLQLQQGET 184
Query: 522 PEWSPAAIRSAIMTTSDSTD 541
P+ P A+R+A++ ++ D
Sbjct: 185 PD--PQAVRTALLNSAIPCD 202
|
This model describes a protease domain associated with the maturation of various members of the cyanobactin family of ribosomally produced, heavily modified bioactive metabolites. Members include the PatA protein and C-terminal domain of the PatG protein of Prochloron didemni, TenA and a region of TenG from Nostoc spongiaeforme var. tenue, etc. Length = 602 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 21/75 (28%)
Query: 468 VMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL------RGAH 521
++APG++IL A V +SGTS A AGIAALL RGA
Sbjct: 189 ILAPGENILGAALGGEVV-------------RRSGTSFAAAIVAGIAALLLSLQLRRGAP 235
Query: 522 PEWSPAAIRSAIMTT 536
P+ P A+R A++ T
Sbjct: 236 PD--PLAVRRALLET 248
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDI 238
+ ++ HGTH + T A +G A G A AR+ + L G SDI
Sbjct: 65 SGVSPSSWHGTHVAGTIAAVT-------NNGVGVA-GVAWGARILPVRVLGKCGGTLSDI 116
Query: 239 IAAIDQA---IIDGV-------DVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAG 288
+ + A + GV V+++SLG DG AI + + V +AG
Sbjct: 117 VDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGACSATMQNAIN--DVRARGVLVVVAAG 174
Query: 289 NQG 291
N+G
Sbjct: 175 NEG 177
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 29/133 (21%), Positives = 42/133 (31%), Gaps = 23/133 (17%)
Query: 173 TITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG 232
S D + HGTH + A + + G AP A + +A + G
Sbjct: 34 VNDAGYASNGDGDSHGTHVAGVIAAARDGGGMH---------GVAPDATLYSARASASAG 84
Query: 233 S--FTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAI------------ATFAAIE 278
S +DI AA D GV +++ S G + A A
Sbjct: 85 STFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAAN 144
Query: 279 KNIFVSTSAGNQG 291
+AGN G
Sbjct: 145 AGGLFVFAAGNDG 157
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 99.98 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.91 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.72 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.72 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.4 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.33 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.8 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.65 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.63 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.62 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.6 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.59 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.51 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.51 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.49 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.47 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.42 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.41 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.4 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.37 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.29 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.29 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.28 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.28 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.18 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.12 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 97.39 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.29 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.54 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 96.11 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 96.07 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.03 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 95.98 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 95.97 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 95.91 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 95.24 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.21 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.29 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 92.38 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 90.37 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 87.37 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 84.7 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=464.00 Aligned_cols=303 Identities=54% Similarity=0.841 Sum_probs=261.9
Q ss_pred cCCCCCCCCcccCCCCCCC--CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeee
Q 004809 81 VKPHTTHSSQFLGLNPKSG--AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLI 158 (729)
Q Consensus 81 ~~~~~~~s~~~~gl~~~~~--~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kii 158 (729)
++|+++++++|+|+..... +|..+++|+||+|||||||||++||+|.+.+..+++..|.+.|..+..+...+||+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 5789999999999976555 47789999999999999999999999999888899999999999998888888999999
Q ss_pred ceeeccccccccCC-CCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCC-CCChH
Q 004809 159 GARFFNKGLLAKNP-TITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNE-GSFTS 236 (729)
Q Consensus 159 g~~~~~~~~~~~~~-~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~ 236 (729)
+.++|.++++.... +.+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. .+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 99999887543322 22344567889999999999999999877666666666778999999999999999884 48899
Q ss_pred HHHHHHHHHHHcCCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccc
Q 004809 237 DIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDREL 316 (729)
Q Consensus 237 ~il~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~ 316 (729)
++++||++|+++|++|||||||......+.+.+..+++.+.++|++||+||||+|+...+.++..||+++||+++
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~----- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST----- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-----
Confidence 999999999999999999999986655667888888889999999999999999988888889999999999821
Q ss_pred cEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCC
Q 004809 317 GATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFD 396 (729)
Q Consensus 317 ~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~ 396 (729)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEE
Q 004809 397 GLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSIL 476 (729)
Q Consensus 397 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~ 476 (729)
+||||+|||.+|+
T Consensus 236 -------------------------------------------------------------------~~~di~apG~~i~ 248 (307)
T cd04852 236 -------------------------------------------------------------------LKPDIAAPGVDIL 248 (307)
T ss_pred -------------------------------------------------------------------CccceeeccCcee
Confidence 5789999999999
Q ss_pred eecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 477 AAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 477 sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
+++..... .........|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus 249 ~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 249 AAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99875311 111223468999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=434.44 Aligned_cols=299 Identities=20% Similarity=0.213 Sum_probs=212.2
Q ss_pred cccCCCC--CCCCCc--CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCee---eceee
Q 004809 90 QFLGLNP--KSGAWP--VSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKL---IGARF 162 (729)
Q Consensus 90 ~~~gl~~--~~~~w~--~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~ki---ig~~~ 162 (729)
..|+++. ++.+|. .+.+|+||+|||||||||++||+|.++=... +....|. ..+. .+|+.. +..++
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Gr----dgiD--dD~nG~vdd~~G~n 366 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGR----KGID--DDNNGNVDDEYGAN 366 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCc----cccc--cccCCccccccccc
Confidence 3456654 345665 3578999999999999999999998641000 0000010 0000 011111 11122
Q ss_pred ccccccccCCCCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHH
Q 004809 163 FNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAA 241 (729)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~a 241 (729)
|.++ ...|.|..||||||||||||...++ .| +.||||+|+|+.+|+++..+ +..+++++|
T Consensus 367 fVd~-----------~~~P~D~~GHGTHVAGIIAA~gnN~---~G-----i~GVAP~AkLi~vKVld~~G~G~~sdI~~A 427 (639)
T PTZ00262 367 FVNN-----------DGGPMDDNYHGTHVSGIISAIGNNN---IG-----IVGVDKRSKLIICKALDSHKLGRLGDMFKC 427 (639)
T ss_pred ccCC-----------CCCCCCCCCcchHHHHHHhccccCC---Cc-----eeeeecccccceEEEecCCCCccHHHHHHH
Confidence 2211 1346889999999999999975332 22 37999999999999998776 788999999
Q ss_pred HHHHHHcCCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------cCC----CCCc
Q 004809 242 IDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT--------------LHN----GIPW 303 (729)
Q Consensus 242 i~~A~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t--------------~~~----~~p~ 303 (729)
|+||++.|++|||||||+.. +...+..++..|.++|++||+||||+|+.... ++. ..|+
T Consensus 428 I~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~n 504 (639)
T PTZ00262 428 FDYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRN 504 (639)
T ss_pred HHHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCC
Confidence 99999999999999999642 34567778889999999999999999864321 111 2467
Q ss_pred eEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHh
Q 004809 304 VMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQN 383 (729)
Q Consensus 304 vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~ 383 (729)
+|+|||+..+..
T Consensus 505 VIaVGAv~~d~~-------------------------------------------------------------------- 516 (639)
T PTZ00262 505 VITVSNLIKDKN-------------------------------------------------------------------- 516 (639)
T ss_pred EEEEeeccCCCC--------------------------------------------------------------------
Confidence 788877532110
Q ss_pred CCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCC
Q 004809 384 ASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFV 463 (729)
Q Consensus 384 ~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~i 463 (729)
.....+.||++|.
T Consensus 517 ------------------------------------------------------------~~~s~s~~Snyg~------- 529 (639)
T PTZ00262 517 ------------------------------------------------------------NQYSLSPNSFYSA------- 529 (639)
T ss_pred ------------------------------------------------------------CcccccccccCCC-------
Confidence 0002344566553
Q ss_pred ccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCC
Q 004809 464 LKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNT 543 (729)
Q Consensus 464 lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~ 543 (729)
.++||+|||++|+++++. +.|..++|||||||||||+||||++++|+|++.+|+++|++||.++...
T Consensus 530 ~~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~ 596 (639)
T PTZ00262 530 KYCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL 596 (639)
T ss_pred CcceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC
Confidence 246999999999999874 4799999999999999999999999999999999999999999876321
Q ss_pred CCCcccCCCCCCCCCCCCCCccccCccCcCCCCccc
Q 004809 544 NSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIY 579 (729)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~ 579 (729)
.....| .|+||+.+|++..+-+
T Consensus 597 -------------~n~~~w-gG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -------------KNKVKW-GGYLDIHHAVNLAIAS 618 (639)
T ss_pred -------------CCcccc-CcEEcHHHHHHHHHhc
Confidence 011223 3899999999865544
|
|
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=406.08 Aligned_cols=270 Identities=25% Similarity=0.281 Sum_probs=203.5
Q ss_pred CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCC
Q 004809 104 SKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRD 183 (729)
Q Consensus 104 ~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D 183 (729)
+++|+||+|+|||||||.+||+|.+...+..+..+ .+... .....|
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-----------------------~~~~~-----------~~~~~d 46 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-----------------------NVLGD-----------LDGGSG 46 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-----------------------eeccc-----------cCCCCC
Confidence 57899999999999999999965433111111111 11111 023457
Q ss_pred CCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEEeecCCCCCC
Q 004809 184 ANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMSLGLDGVD 263 (729)
Q Consensus 184 ~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~ 263 (729)
..+|||||||||+ ||||+|+|+.+|+. ...+++++||+||++.|++|||||||....+
T Consensus 47 ~~gHGT~vAgii~------------------GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~ 104 (275)
T cd05562 47 GGDEGRAMLEIIH------------------DIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEP 104 (275)
T ss_pred CCchHHHHHHHHh------------------ccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCC
Confidence 8899999999993 89999999999874 4578999999999999999999999986544
Q ss_pred CC-CcHHHHHHHHHHhC-CcEEEEecCCCCCCCC-CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCC
Q 004809 264 LY-EDPVAIATFAAIEK-NIFVSTSAGNQGPFIG-TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSL 340 (729)
Q Consensus 264 ~~-~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~ 340 (729)
.+ ...+..++.++.++ |++||+||||+|+... ..+...|++|+|||++.+.........+
T Consensus 105 ~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~----------------- 167 (275)
T cd05562 105 FFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA----------------- 167 (275)
T ss_pred cccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-----------------
Confidence 33 34677777888887 9999999999998543 3467889999999976443210000000
Q ss_pred ceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHH
Q 004809 341 IDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILK 420 (729)
Q Consensus 341 ~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 420 (729)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCC-CEEeecCCCCCccccCCCCCCCCcee
Q 004809 421 DYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGD-SILAAWPSNLAVSQTNSKLSFSNFNL 499 (729)
Q Consensus 421 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~ 499 (729)
........+.|++|||+.+.+ +||||+|||. ++.+.+.. +.|..
T Consensus 168 --------------------~~~~~s~~~~~~~~~p~~~~~--~~~di~Apgg~~~~~~~~~-------------~~~~~ 212 (275)
T cd05562 168 --------------------PGGTPSSFDPVGIRLPTPEVR--QKPDVTAPDGVNGTVDGDG-------------DGPPN 212 (275)
T ss_pred --------------------cCCCcccccCCcccCcCCCCC--cCCeEEcCCcccccCCCcC-------------Cceee
Confidence 000011345688899988765 9999999975 44444432 57899
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCC
Q 004809 500 QSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574 (729)
Q Consensus 500 ~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 574 (729)
++|||||||||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+|++
T Consensus 213 ~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-------------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 213 FFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE-------------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-------------CCCCCCcCcCcccHHHHhh
Confidence 9999999999999999999999999999999999999987642 2356689999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=401.46 Aligned_cols=243 Identities=27% Similarity=0.409 Sum_probs=197.1
Q ss_pred CcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCC
Q 004809 101 WPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNS 180 (729)
Q Consensus 101 w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 180 (729)
|.++++|+||+|||||+|||.+||+|.+.- ...+|... ..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~~------------~~ 40 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTNE------------KT 40 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCCC------------CC
Confidence 899999999999999999999999997420 00111110 23
Q ss_pred CCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCC
Q 004809 181 PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGL 259 (729)
Q Consensus 181 ~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~ 259 (729)
..|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..+.++++|++|++.++||||||||.
T Consensus 41 ~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~ 109 (255)
T cd07479 41 LDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGG 109 (255)
T ss_pred CCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccC
Confidence 45778999999999999732 137999999999999998776 567789999999999999999999997
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC--cCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCC
Q 004809 260 DGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT--LHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGN 337 (729)
Q Consensus 260 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t--~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~ 337 (729)
.. +...++..++.++.++|++||+||||+|+...+ .+...+++|+|||...
T Consensus 110 ~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~------------------------- 162 (255)
T cd07479 110 PD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF------------------------- 162 (255)
T ss_pred CC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-------------------------
Confidence 43 334567777778889999999999999986444 4567789999998431
Q ss_pred CCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHH
Q 004809 338 SSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGD 417 (729)
Q Consensus 338 ~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~ 417 (729)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCC----CCCCccCcEEecCCCEEeecCCCCCccccCCCCC
Q 004809 418 ILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSIS----CPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLS 493 (729)
Q Consensus 418 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~----~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 493 (729)
.+.++.|||+|++.. ..+.+||||.|||.+|+++...
T Consensus 163 ---------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~------------ 203 (255)
T cd07479 163 ---------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK------------ 203 (255)
T ss_pred ---------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC------------
Confidence 225688999996521 1234899999999999987653
Q ss_pred CCCceeeccccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHhccccCC
Q 004809 494 FSNFNLQSGTSMACPQAAGIAALLRGAHP----EWSPAAIRSAIMTTSDSTD 541 (729)
Q Consensus 494 ~~~y~~~sGTSMAaP~VAG~aALl~q~~P----~~sp~~Ik~~L~~TA~~~~ 541 (729)
..|..++|||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 204 -~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 -GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred -CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 4688999999999999999999999999 7999999999999999763
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-48 Score=409.98 Aligned_cols=286 Identities=30% Similarity=0.292 Sum_probs=190.0
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCC
Q 004809 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANG 186 (729)
Q Consensus 107 G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~g 186 (729)
|+||+|+|||||||.+||+|.++.. ..|+..++ +...++...++..+ ....+.|.+|
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~~d---------~~~~~~~g~d~~~~----------~~~~~~D~~g 57 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFD---------YKAYLLPGMDKWGG----------FYVIMYDFFS 57 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccccC---------cCCCccCCcCCCCC----------ccCCCCCccc
Confidence 8999999999999999999975421 01111110 00111111111111 1124678999
Q ss_pred ChhHHHHHhcccCcCCCcccccc-ccceeeccCCCEEEEEEeecCCC-CChHHHHH-------HHHHH--HHcCCcEEEe
Q 004809 187 HGTHTSSTAAGSYVERASYFGYA-IGTALGTAPLARVAMYKALWNEG-SFTSDIIA-------AIDQA--IIDGVDVLSM 255 (729)
Q Consensus 187 HGTHVAgiaAG~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~-------ai~~A--~~~gvdVIn~ 255 (729)
|||||||||||+.....+.+|+. ...+.||||+|+|+.+|+|...+ +....++. +++|+ .+++++||||
T Consensus 58 HGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~ 137 (311)
T cd07497 58 HGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISN 137 (311)
T ss_pred cchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEe
Confidence 99999999999864333322211 22358999999999999997543 33333333 33443 3678999999
Q ss_pred ecCCCCCCCC-----CcHHHHHHHH-HHhCCcEEEEecCCCCCCCCC--cCCCCCceEEEcccccCccccEEEEeCCCcE
Q 004809 256 SLGLDGVDLY-----EDPVAIATFA-AIEKNIFVSTSAGNQGPFIGT--LHNGIPWVMTVAAGTMDRELGATLTLGNGNT 327 (729)
Q Consensus 256 SlG~~~~~~~-----~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~t--~~~~~p~vitVgAst~d~~~~~~~~l~~g~~ 327 (729)
|||.....+. .+........ +.++|+++|+||||+|+...+ .+..++++|+|||++.....+... +
T Consensus 138 S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~-~----- 211 (311)
T cd07497 138 SWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL-F----- 211 (311)
T ss_pred cCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh-h-----
Confidence 9997542211 1222222222 248999999999999986443 456789999999975321100000 0
Q ss_pred EEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecccccc
Q 004809 328 VTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFP 407 (729)
Q Consensus 328 ~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p 407 (729)
T Consensus 212 -------------------------------------------------------------------------------- 211 (311)
T cd07497 212 -------------------------------------------------------------------------------- 211 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccc
Q 004809 408 AVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQ 487 (729)
Q Consensus 408 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~ 487 (729)
.......+.++.||||||+.+.+ +||||+|||++|+++.+......
T Consensus 212 -------------------------------~~~~~~~~~~~~fSs~Gp~~~g~--~kPdv~ApG~~i~s~~~~~~~~~- 257 (311)
T cd07497 212 -------------------------------GYLPGGSGDVVSWSSRGPSIAGD--PKPDLAAIGAFAWAPGRVLDSGG- 257 (311)
T ss_pred -------------------------------ccccCCCCCccccccCCCCcccC--CCCceeccCcceEeecccCCCCc-
Confidence 00012234689999999998865 99999999999999876432100
Q ss_pred cCCCCCCCCceeeccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 004809 488 TNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHP------EWSPAAIRSAIMTTS 537 (729)
Q Consensus 488 ~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P------~~sp~~Ik~~L~~TA 537 (729)
.......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 258 --~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 258 --ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred --ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 011124799999999999999999999999886 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=414.49 Aligned_cols=311 Identities=27% Similarity=0.368 Sum_probs=233.3
Q ss_pred CCcCCC-CCCCcEEEEEcccCCCCCCCCCCCCCCCCCC-----ccccccccCCccCcccCCCeeeceeeccccccccCCC
Q 004809 100 AWPVSK-FGKDIIIGVVDTGVWPESESYNDGGMTEIPS-----RWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPT 173 (729)
Q Consensus 100 ~w~~~~-~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~-----~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~ 173 (729)
+|+++. +|+||+|+|||||||++||+|.+....+... .+...+..+ ...+++.|++..++|.++...
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCc----
Confidence 788877 9999999999999999999999764332111 122222221 123477888888888765321
Q ss_pred CccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecC--CC-CChHHHHHHHHHHHHcCC
Q 004809 174 ITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWN--EG-SFTSDIIAAIDQAIIDGV 250 (729)
Q Consensus 174 ~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~il~ai~~A~~~gv 250 (729)
.....|..+|||||||||+|...+..+ ...+.||||+|+|+.+|++.. .+ +....+++|++++++.|+
T Consensus 75 ----~~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~ 145 (346)
T cd07475 75 ----ILDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGA 145 (346)
T ss_pred ----cCCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 111457889999999999998654221 123489999999999999973 33 778889999999999999
Q ss_pred cEEEeecCCCCCC-CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC----------------cCCCCCceEEEcccccC
Q 004809 251 DVLSMSLGLDGVD-LYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT----------------LHNGIPWVMTVAAGTMD 313 (729)
Q Consensus 251 dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t----------------~~~~~p~vitVgAst~d 313 (729)
+|||||||..... .....+..++.++.++|++||+||||+|..... .+...+++|+||+....
T Consensus 146 ~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~ 225 (346)
T cd07475 146 DVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK 225 (346)
T ss_pred CEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc
Confidence 9999999986532 445677778888999999999999999864322 12234566666654300
Q ss_pred ccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEe
Q 004809 314 RELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFIS 393 (729)
Q Consensus 314 ~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~ 393 (729)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCC
Q 004809 394 DFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGD 473 (729)
Q Consensus 394 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~ 473 (729)
........++.||+|||+...+ +||||+|||.
T Consensus 226 ----------------------------------------------~~~~~~~~~~~~S~~G~~~~~~--~~pdi~apG~ 257 (346)
T cd07475 226 ----------------------------------------------VPNPNGGQMSGFSSWGPTPDLD--LKPDITAPGG 257 (346)
T ss_pred ----------------------------------------------cCCCCCCccCCCcCCCCCcccC--cCCeEEeCCC
Confidence 0012344678999999999876 9999999999
Q ss_pred CEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhccccCCCCCC
Q 004809 474 SILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGA----HPEWSPAA----IRSAIMTTSDSTDNTNS 545 (729)
Q Consensus 474 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~----~P~~sp~~----Ik~~L~~TA~~~~~~~~ 545 (729)
+|+++... ..|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+.....
T Consensus 258 ~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~- 323 (346)
T cd07475 258 NIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE- 323 (346)
T ss_pred CeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccC-
Confidence 99998764 47889999999999999999999997 79999876 7889999998532111
Q ss_pred CcccCCCCCCCCCCCCCCccccCccCcCC
Q 004809 546 DIKDIGDDNKPATPIAMGAGHINPDKALD 574 (729)
Q Consensus 546 ~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 574 (729)
. ...+..+..+|+|+||+.+|++
T Consensus 324 -----~-~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 324 -----D-TKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred -----C-CCccCCccccCcchhcHHHhhC
Confidence 0 1455677899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-47 Score=420.76 Aligned_cols=400 Identities=22% Similarity=0.263 Sum_probs=243.3
Q ss_pred CCCCCcEEEEEcccCCCCCCCCCC-CCCCCCCCccccccccCCccCcccCCCeeeceeeccc-cccc-cCCCCccCCCCC
Q 004809 105 KFGKDIIIGVVDTGVWPESESYND-GGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNK-GLLA-KNPTITIAMNSP 181 (729)
Q Consensus 105 ~~G~gvvVgVIDtGid~~Hp~f~~-~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~-~~~~-~~~~~~~~~~~~ 181 (729)
++|+||+|||||||||+.||+|++ +|.+++...|++....+.. .....+...+.+ ..+. .....+.+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP------PGGYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC------CccccCceEEeHHHHHHHHhcCCccccCcC
Confidence 479999999999999999999995 4678999999998775432 111222222221 1111 111223334456
Q ss_pred CCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-----------CChHHHHHHHHHHHHc--
Q 004809 182 RDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-----------SFTSDIIAAIDQAIID-- 248 (729)
Q Consensus 182 ~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~il~ai~~A~~~-- 248 (729)
.|..||||||||||||+..++. .+.||||+|+|+++|++...+ +..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~~~~--------~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~ 146 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGDNNP--------DFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKAL 146 (455)
T ss_pred CCCCCchHHHHHHHhcCCCCCC--------CccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHH
Confidence 7899999999999999865422 248999999999999998764 5688999999999864
Q ss_pred ---CCcEEEeecCCCCCC-CCCcHHHHHHHHHHhC-CcEEEEecCCCCCCCCCcCCC-----CC--ceEEEcccccCccc
Q 004809 249 ---GVDVLSMSLGLDGVD-LYEDPVAIATFAAIEK-NIFVSTSAGNQGPFIGTLHNG-----IP--WVMTVAAGTMDREL 316 (729)
Q Consensus 249 ---gvdVIn~SlG~~~~~-~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~t~~~~-----~p--~vitVgAst~d~~~ 316 (729)
.++|||||||....+ ...+.+..++..+.++ |++||+||||+|....+.... .. --+.|+... +.+
T Consensus 147 ~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~~ 224 (455)
T cd07478 147 ELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KGF 224 (455)
T ss_pred HhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cce
Confidence 478999999986543 3456777777776665 999999999999754433221 00 012232211 111
Q ss_pred cE------------EEEeCCCcEEEeeeecCCCCCCceeeEEEcCC--cccccccccCCceEEEEccCCCchhhHHHHHH
Q 004809 317 GA------------TLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDE--CLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQ 382 (729)
Q Consensus 317 ~~------------~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~--c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~ 382 (729)
.- .+....|+...... ........+.+.+... |..........|.-.+..+ ..+ .
T Consensus 225 ~~eiW~~~~d~~~v~i~sP~Ge~~~~i~--~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~--------~~~-~ 293 (455)
T cd07478 225 NLEIWGDFPDRFSVSIISPSGESSGRIN--PGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIR--------FKN-I 293 (455)
T ss_pred EEEEecCCCCEEEEEEECCCCCccCccC--cCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEE--------ccC-C
Confidence 10 01111111110000 0000001111111111 1111111122222222211 111 2
Q ss_pred hCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEeccee-----ec-C-CCCCceecccCCC
Q 004809 383 NASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTE-----LG-T-KPAPSVASYSSRG 455 (729)
Q Consensus 383 ~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~-----~~-~-~~~~~~a~FSS~G 455 (729)
..|.+-+.++.... .....+.|+|.-.+...+. .++.. ++..++...... ++ . .....++.|||||
T Consensus 294 ~~GiW~i~~~~~~~-~~g~~~~Wlp~~~~~~~~t----~f~~~--~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G 366 (455)
T cd07478 294 KPGIWKIRLTGVSI-TDGRFDAWLPSRGLLSENT----RFLEP--DPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRG 366 (455)
T ss_pred CccceEEEEEeccC-CCceEEEEecCcCcCCCCC----EeecC--CCCceEecCCCCCCcEEEEEEeCCCCcccCccCCC
Confidence 34556666655411 1111224555443332211 11211 222333333221 11 1 2234699999999
Q ss_pred CCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhC------CCCCHHHH
Q 004809 456 PSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAH------PEWSPAAI 529 (729)
Q Consensus 456 P~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~------P~~sp~~I 529 (729)
|+.+.+ +||||+|||++|+++++. +.|..++|||||||||||++|||+|.+ |.|++++|
T Consensus 367 ~~~~~~--~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~i 431 (455)
T cd07478 367 PTRDGR--IKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKI 431 (455)
T ss_pred cCCCCC--cCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHH
Confidence 999876 999999999999999884 479999999999999999999999865 56799999
Q ss_pred HHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCcc
Q 004809 530 RSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAG 565 (729)
Q Consensus 530 k~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G 565 (729)
|++|++||+++. ...+++.+||||
T Consensus 432 k~~L~~tA~~~~------------~~~~pn~~~GyG 455 (455)
T cd07478 432 KTYLIRGARRRP------------GDEYPNPEWGYG 455 (455)
T ss_pred HHHHHHhCccCC------------CCCCCCCCCCCC
Confidence 999999999874 233567899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=397.83 Aligned_cols=293 Identities=31% Similarity=0.377 Sum_probs=227.8
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
+.+|+.+++|+||+|||||+|||++||+|.+.-.+ +.++.+.++|..... .......+
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~-~~~~~~~~ 60 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDY-DGTNPPVP 60 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCccc-ccccCCCC
Confidence 56899999999999999999999999999864110 112233333332110 00111223
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEee
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMS 256 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~S 256 (729)
...+.|..+|||||||||+|...+ .| +.||||+|+|+.+|++...+ .....++++|++|+++|++|||+|
T Consensus 61 ~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S 131 (312)
T cd07489 61 DDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITAS 131 (312)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeC
Confidence 345677899999999999998543 23 38999999999999998665 667778999999999999999999
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC---CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeee
Q 004809 257 LGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI---GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSL 333 (729)
Q Consensus 257 lG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~ 333 (729)
||.... +....+...+.++.++|+++|+||||+|... ...+...+++|+||+.+
T Consensus 132 ~g~~~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------------------- 188 (312)
T cd07489 132 LGGPSG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------------------- 188 (312)
T ss_pred CCcCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec----------------------
Confidence 997542 3447777778888999999999999998653 23456778899998721
Q ss_pred cCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEech
Q 004809 334 YPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNS 413 (729)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~ 413 (729)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCC
Q 004809 414 KTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLS 493 (729)
Q Consensus 414 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 493 (729)
+.||++||+.+.. .||||+|||++++++++..
T Consensus 189 -----------------------------------~~~s~~g~~~~~~--~kpdv~ApG~~i~~~~~~~----------- 220 (312)
T cd07489 189 -----------------------------------SYFSSWGPTNELY--LKPDVAAPGGNILSTYPLA----------- 220 (312)
T ss_pred -----------------------------------CCccCCCCCCCCC--cCccEEcCCCCEEEeeeCC-----------
Confidence 4689999998865 9999999999999988753
Q ss_pred CCCceeeccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCc
Q 004809 494 FSNFNLQSGTSMACPQAAGIAALLRGAH-PEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKA 572 (729)
Q Consensus 494 ~~~y~~~sGTSMAaP~VAG~aALl~q~~-P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 572 (729)
...|..++|||||||+|||++|||+|++ |.+++.+||++|++||..+...+..... ....+...+|+|+||+.+|
T Consensus 221 ~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~----~~~~~~~~~G~G~vn~~~a 296 (312)
T cd07489 221 GGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL----PDLAPVAQQGAGLVNAYKA 296 (312)
T ss_pred CCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc----cCCCCHhhcCcceeeHHHH
Confidence 1358999999999999999999999999 9999999999999999987653311100 1135667899999999999
Q ss_pred CCCC
Q 004809 573 LDPG 576 (729)
Q Consensus 573 l~~g 576 (729)
++..
T Consensus 297 ~~~~ 300 (312)
T cd07489 297 LYAT 300 (312)
T ss_pred hcCC
Confidence 9854
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=385.99 Aligned_cols=246 Identities=26% Similarity=0.314 Sum_probs=202.5
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCC
Q 004809 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMN 179 (729)
Q Consensus 100 ~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 179 (729)
+|..+++|+||+|||||+|||.+||+|.+....+... +.. ...
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~--------------------------~~~-----------~~~ 44 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFT--------------------------YAA-----------AAC 44 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccC--------------------------ccc-----------cCC
Confidence 7999999999999999999999999998642211000 000 002
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC--CChHHHHHHHHHHHHcCCcEEEeec
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG--SFTSDIIAAIDQAIIDGVDVLSMSL 257 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~il~ai~~A~~~gvdVIn~Sl 257 (729)
...|..+|||||||||+|+... .+.||||+|+|+.+|++...+ ++..++++||++|++.|++||||||
T Consensus 45 ~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~ 114 (267)
T cd07476 45 QDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISG 114 (267)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 3456789999999999987421 147999999999999997654 4577899999999999999999999
Q ss_pred CCCCC-CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCC
Q 004809 258 GLDGV-DLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPG 336 (729)
Q Consensus 258 G~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~ 336 (729)
|.... ......+..++..|.++|++||+||||+|.....++...|++|+|||+..+
T Consensus 115 G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------------- 171 (267)
T cd07476 115 GRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD----------------------- 171 (267)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-----------------------
Confidence 97542 234566778888899999999999999998777778889999999985311
Q ss_pred CCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhH
Q 004809 337 NSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTG 416 (729)
Q Consensus 337 ~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g 416 (729)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCC
Q 004809 417 DILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSN 496 (729)
Q Consensus 417 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 496 (729)
+.++.||++|+.. .||||+|||.+|+++++. +.
T Consensus 172 -----------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~-------------~~ 204 (267)
T cd07476 172 -----------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG-------------GE 204 (267)
T ss_pred -----------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-------------CC
Confidence 2456899999865 478999999999998874 47
Q ss_pred ceeeccccchhHHHHHHHHHHHhhCCC----CCHHHHHHHHHhccccCCC
Q 004809 497 FNLQSGTSMACPQAAGIAALLRGAHPE----WSPAAIRSAIMTTSDSTDN 542 (729)
Q Consensus 497 y~~~sGTSMAaP~VAG~aALl~q~~P~----~sp~~Ik~~L~~TA~~~~~ 542 (729)
|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 205 ~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 205 VVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred eEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 899999999999999999999999887 9999999999999999864
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=387.94 Aligned_cols=287 Identities=37% Similarity=0.514 Sum_probs=216.9
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCC----CCccCCCCCC
Q 004809 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNP----TITIAMNSPR 182 (729)
Q Consensus 107 G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~----~~~~~~~~~~ 182 (729)
|+||+|||||+||+++||+|.+.. +.+++++..++|......... ..........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999998541 133444555544432110000 0000112345
Q ss_pred CCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCCC
Q 004809 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLDG 261 (729)
Q Consensus 183 D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~~ 261 (729)
|..+|||||||+|+|...+. ..+.|+||+|+|+.+|++...+ +...+++++|+++++.+++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 68899999999999985432 2248999999999999998544 78889999999999999999999999754
Q ss_pred CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--CCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCC
Q 004809 262 VDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL--HNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSS 339 (729)
Q Consensus 262 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~--~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~ 339 (729)
.. ..+.+..++..+.++|+++|+||||+|...... +...+++|+||++....
T Consensus 132 ~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~------------------------- 185 (295)
T cd07474 132 NG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD------------------------- 185 (295)
T ss_pred CC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-------------------------
Confidence 32 456777888899999999999999998765443 56789999999864110
Q ss_pred CceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHH
Q 004809 340 LIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDIL 419 (729)
Q Consensus 340 ~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 419 (729)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCcEEEEEecceeecCCCCCceecccC-CCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCce
Q 004809 420 KDYIKIENNATATIQFQKTELGTKPAPSVASYSS-RGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFN 498 (729)
Q Consensus 420 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS-~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 498 (729)
.........|++ +|+....+ +||||+|||++|++++... ...|.
T Consensus 186 ----------------------~~~~~~~~~~~s~~~~~~~~~--~kpdv~apG~~i~~~~~~~-----------~~~~~ 230 (295)
T cd07474 186 ----------------------VAEADTVGPSSSRGPPTSDSA--IKPDIVAPGVDIMSTAPGS-----------GTGYA 230 (295)
T ss_pred ----------------------cCCCCceeccCCCCCCCCCCC--cCCCEECCcCceEeeccCC-----------CCceE
Confidence 001112334444 45555544 9999999999999998753 25789
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCc
Q 004809 499 LQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKA 572 (729)
Q Consensus 499 ~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 572 (729)
.++|||||||+|||++|||+|++|+|++++||++|++||++....+ ....++..+|+|+||+.+|
T Consensus 231 ~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~---------~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 231 RMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD---------GVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred EeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC---------CCcCChhccCcceeccccC
Confidence 9999999999999999999999999999999999999999876533 2222457899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=383.69 Aligned_cols=267 Identities=24% Similarity=0.306 Sum_probs=188.9
Q ss_pred CCcEEEEEcccCCCCCCCCCCCCCC-CCCCccccccccCCccCcccCCCeeeceeecccccccc--------C----CCC
Q 004809 108 KDIIIGVVDTGVWPESESYNDGGMT-EIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAK--------N----PTI 174 (729)
Q Consensus 108 ~gvvVgVIDtGid~~Hp~f~~~g~~-~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~--------~----~~~ 174 (729)
|+|+|||||||||++||+|++.-.. +.....++..+.+.+|.. + +..++|...+... + ...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----c-ccCeeccCCcccccccccCcccccccccc
Confidence 6899999999999999999874110 000001111111111110 1 2233333211000 0 000
Q ss_pred ccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEE
Q 004809 175 TIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLS 254 (729)
Q Consensus 175 ~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn 254 (729)
+.+...+.+..+|||||||||||...++ .| +.||||+|+|+.+|++........++++||+||++.|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 1122345578999999999999975432 22 389999999999999865557788999999999999999999
Q ss_pred eecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC---c--------CCCCCceEEEcccccCccccEEEEeC
Q 004809 255 MSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT---L--------HNGIPWVMTVAAGTMDRELGATLTLG 323 (729)
Q Consensus 255 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t---~--------~~~~p~vitVgAst~d~~~~~~~~l~ 323 (729)
||||..... ....+..++..|.++|+++|+||||+|..... . +...+.+|+||++....
T Consensus 147 ~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--------- 216 (291)
T cd07483 147 MSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--------- 216 (291)
T ss_pred eCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---------
Confidence 999964322 23456677778889999999999999854221 1 12345677777643211
Q ss_pred CCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecc
Q 004809 324 NGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQ 403 (729)
Q Consensus 324 ~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 403 (729)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCC
Q 004809 404 SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNL 483 (729)
Q Consensus 404 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~ 483 (729)
....++.||++|+ .+|||.|||++|+++.+.
T Consensus 217 ----------------------------------------~~~~~~~~Sn~G~-------~~vdi~APG~~i~s~~~~-- 247 (291)
T cd07483 217 ----------------------------------------ENNLVANFSNYGK-------KNVDVFAPGERIYSTTPD-- 247 (291)
T ss_pred ----------------------------------------CcccccccCCCCC-------CceEEEeCCCCeEeccCc--
Confidence 1124688999997 357999999999998764
Q ss_pred CccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 484 AVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 484 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 248 -----------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 248 -----------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred -----------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 47899999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=371.23 Aligned_cols=234 Identities=27% Similarity=0.362 Sum_probs=190.4
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCChh
Q 004809 110 IIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGT 189 (729)
Q Consensus 110 vvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 189 (729)
|+|||||||||.+||+|.++- +..+++.. ....|..+|||
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~-------------~~~~~~~~HGT 40 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG-------------PGAPAPSAHGT 40 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC-------------CCCCCCCCCHH
Confidence 689999999999999997541 11111110 12456789999
Q ss_pred HHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC----CChHHHHHHHHHHHHcCCcEEEeecCCCCCCCC
Q 004809 190 HTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG----SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLY 265 (729)
Q Consensus 190 HVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~ 265 (729)
||||||+|+.... .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||...
T Consensus 41 ~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~---- 105 (239)
T cd05561 41 AVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP---- 105 (239)
T ss_pred HHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----
Confidence 9999999984321 5999999999999998642 67788999999999999999999999642
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceee
Q 004809 266 EDPVAIATFAAIEKNIFVSTSAGNQGPFI-GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFP 344 (729)
Q Consensus 266 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~ 344 (729)
...+..++..+.++|++||+||||+|+.. ..+++..+++|+|++++.
T Consensus 106 ~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~-------------------------------- 153 (239)
T cd05561 106 NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA-------------------------------- 153 (239)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC--------------------------------
Confidence 34667777789999999999999999753 456777889999988431
Q ss_pred EEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHh
Q 004809 345 IVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIK 424 (729)
Q Consensus 345 lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 424 (729)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeecccc
Q 004809 425 IENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTS 504 (729)
Q Consensus 425 ~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 504 (729)
.+.++.||++|+.. ||.|||++|+++.+. +.|..++|||
T Consensus 154 --------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~~~~sGTS 192 (239)
T cd05561 154 --------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGYRYVSGTS 192 (239)
T ss_pred --------------------CCCccccCCCCCcc--------eEEccccceecccCC-------------CCEEEeCCHH
Confidence 12457899999854 999999999997653 4799999999
Q ss_pred chhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCcc
Q 004809 505 MACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAG 565 (729)
Q Consensus 505 MAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G 565 (729)
||||||||++|||+|++| +++++||++|++||+++.. +..+..||||
T Consensus 193 ~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~-------------~~~d~~~G~G 239 (239)
T cd05561 193 FAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP-------------PGRDPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC-------------CCcCCCcCCC
Confidence 999999999999999999 9999999999999998743 3456689988
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=370.97 Aligned_cols=247 Identities=31% Similarity=0.367 Sum_probs=193.9
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCC
Q 004809 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANG 186 (729)
Q Consensus 107 G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~g 186 (729)
|+||+|||||+||+++||+|.+. |+..... ++...+.+.+. ......+.|..+
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~~~~~~~~d~--------~~~~~~~~d~~~ 53 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SADHDYNWFDP--------VGNTPLPYDDNG 53 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------CcccccccccC--------CCCCCCCCCCCC
Confidence 89999999999999999999864 1111000 00000001000 001134567889
Q ss_pred ChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH------------cCCcEEE
Q 004809 187 HGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII------------DGVDVLS 254 (729)
Q Consensus 187 HGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~------------~gvdVIn 254 (729)
|||||||||+|..... ...||||+|+|+.+|++...++...+++++++++++ .|++|||
T Consensus 54 HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin 124 (264)
T cd07481 54 HGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVIN 124 (264)
T ss_pred chhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEE
Confidence 9999999999874322 127999999999999998877888899999999985 7899999
Q ss_pred eecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcCCCCCceEEEcccccCccccEEEEeCCCcEEEee
Q 004809 255 MSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG---TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGL 331 (729)
Q Consensus 255 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~ 331 (729)
||||.... ....+..++..+.++|++||+||||+|.... ..+...+++|+||+.+.
T Consensus 125 ~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------------------- 183 (264)
T cd07481 125 NSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------------------- 183 (264)
T ss_pred eCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-------------------
Confidence 99997543 2445555666778899999999999986543 25677899999998532
Q ss_pred eecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEe
Q 004809 332 SLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFM 411 (729)
Q Consensus 332 ~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i 411 (729)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCC
Q 004809 412 NSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSK 491 (729)
Q Consensus 412 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~ 491 (729)
...++.||++||....+ +||||+|||.+|+++++.
T Consensus 184 ---------------------------------~~~~~~~S~~g~~~~~~--~~~dv~ApG~~i~s~~~~---------- 218 (264)
T cd07481 184 ---------------------------------NDVLADFSSRGPSTYGR--IKPDISAPGVNIRSAVPG---------- 218 (264)
T ss_pred ---------------------------------CCCCccccCCCCCCCCC--cCceEEECCCCeEEecCC----------
Confidence 12567899999998865 999999999999999874
Q ss_pred CCCCCceeeccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 004809 492 LSFSNFNLQSGTSMACPQAAGIAALLRGAHPE--WSPAAIRSAIMTTSD 538 (729)
Q Consensus 492 ~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~--~sp~~Ik~~L~~TA~ 538 (729)
+.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 219 ---~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 ---GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred ---CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 47889999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=370.54 Aligned_cols=243 Identities=32% Similarity=0.387 Sum_probs=194.9
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCCh
Q 004809 109 DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHG 188 (729)
Q Consensus 109 gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 188 (729)
||+||||||||+++||+|..... .++.++++.++|.+... ....|..+||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~~----------~~~~~~~~HG 50 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNSN----------NTNYTDDDHG 50 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccCCC----------CCCCCCCCch
Confidence 79999999999999999953210 13456777776655421 1135788999
Q ss_pred hHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC---CChHHHHHHHHHHHHcCCcEEEeecCCCCCCCC
Q 004809 189 THTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG---SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLY 265 (729)
Q Consensus 189 THVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~ 265 (729)
|||||+|+|+.. +.+.||||+|+|+.+|+..... .....++.|+++|.+.|++|||||||.......
T Consensus 51 T~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~ 120 (261)
T cd07493 51 TAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNP 120 (261)
T ss_pred hhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCc
Confidence 999999999742 2248999999999999875432 345678899999999999999999997543211
Q ss_pred ------------CcHHHHHHHHHHhCCcEEEEecCCCCCC---CCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEe
Q 004809 266 ------------EDPVAIATFAAIEKNIFVSTSAGNQGPF---IGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTG 330 (729)
Q Consensus 266 ------------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g 330 (729)
...+..++..+.++|+++|+||||+|.. ....+...+++|+|||...
T Consensus 121 ~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~------------------ 182 (261)
T cd07493 121 TYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA------------------ 182 (261)
T ss_pred ccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc------------------
Confidence 2356677788899999999999999976 3456677899999998431
Q ss_pred eeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEE
Q 004809 331 LSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVF 410 (729)
Q Consensus 331 ~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 410 (729)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCC
Q 004809 411 MNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNS 490 (729)
Q Consensus 411 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~ 490 (729)
...++.||++||..+.+ +||||+|||.+|++....
T Consensus 183 ----------------------------------~~~~~~~S~~G~~~~~~--~~pdi~a~G~~~~~~~~~--------- 217 (261)
T cd07493 183 ----------------------------------NGNKASFSSIGPTADGR--LKPDVMALGTGIYVINGD--------- 217 (261)
T ss_pred ----------------------------------CCCCCccCCcCCCCCCC--cCCceEecCCCeEEEcCC---------
Confidence 12567899999998765 999999999999985442
Q ss_pred CCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 491 KLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 491 ~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
..|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 218 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 ----GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ----CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=369.52 Aligned_cols=262 Identities=30% Similarity=0.310 Sum_probs=200.9
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCC
Q 004809 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMN 179 (729)
Q Consensus 100 ~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 179 (729)
+|..+++|+||+|+|||||||++||+|.+..... +...+...+...... .....
T Consensus 2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------------------~~~~~~~~~~~~~~~-~~~~~ 55 (273)
T cd07485 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------------------GYDPAVNGYNFVPNV-GDIDN 55 (273)
T ss_pred ccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------------------CcccccCCccccccc-CCcCC
Confidence 7999999999999999999999999999751100 000000010000000 00112
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecC
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLG 258 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG 258 (729)
...|..+|||||||||+|+.......-|++ .+.|+||+|+|+.+|++...+ +....++++|++|++.|++|||||||
T Consensus 56 ~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g 133 (273)
T cd07485 56 DVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWG 133 (273)
T ss_pred CCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCC
Confidence 355778999999999999754322221221 236799999999999998765 77888999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEee
Q 004809 259 LDGVDLYEDPVAIATFAAIEK-------NIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGL 331 (729)
Q Consensus 259 ~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~ 331 (729)
......+...+..++..+.++ |++||+||||+|......++..+++|+||+++.+
T Consensus 134 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------------------ 195 (273)
T cd07485 134 GTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------------------ 195 (273)
T ss_pred CCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------------------
Confidence 865444566777777888888 9999999999998877668888999999985421
Q ss_pred eecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEe
Q 004809 332 SLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFM 411 (729)
Q Consensus 332 ~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i 411 (729)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCC-CEEeecCCCCCccccCC
Q 004809 412 NSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGD-SILAAWPSNLAVSQTNS 490 (729)
Q Consensus 412 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~-~I~sa~~~~~~~~~~~~ 490 (729)
+.++.||++|+.. ||.|||. .|+++++....
T Consensus 196 ----------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~------ 227 (273)
T cd07485 196 ----------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG------ 227 (273)
T ss_pred ----------------------------------CCcCccccCCCce--------EEEeCCCCccccccccccC------
Confidence 2457899999865 9999999 89888764311
Q ss_pred CCCCCCceeeccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 004809 491 KLSFSNFNLQSGTSMACPQAAGIAALLRGAHPE-WSPAAIRSAIMTT 536 (729)
Q Consensus 491 ~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~-~sp~~Ik~~L~~T 536 (729)
.....|..++|||||||+|||++|||+|++|. |+|+|||++|++|
T Consensus 228 -~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 228 -DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred -CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 11357899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=362.76 Aligned_cols=256 Identities=33% Similarity=0.427 Sum_probs=203.6
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCC
Q 004809 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANG 186 (729)
Q Consensus 107 G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~g 186 (729)
|+||+|+|||+||+++||+|.+.... . +.+.... .......|..+
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~-----------------------~~~~~~~--------~~~~~~~d~~~ 45 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----F-----------------------ADFVNTV--------NGRTTPYDDNG 45 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----c-----------------------ccccccc--------cCCCCCCCCCC
Confidence 89999999999999999999875210 0 0010000 01134567789
Q ss_pred ChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc----CCcEEEeecCCCC
Q 004809 187 HGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID----GVDVLSMSLGLDG 261 (729)
Q Consensus 187 HGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~----gvdVIn~SlG~~~ 261 (729)
|||||||+|+|..... .+.+.|+||+|+|+.+|+++..+ ....++++||+++++. +++|||+|||...
T Consensus 46 HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~ 118 (264)
T cd07487 46 HGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPP 118 (264)
T ss_pred chHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCC
Confidence 9999999999985432 12248999999999999998776 6788999999999998 9999999999765
Q ss_pred C-CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC--CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCC
Q 004809 262 V-DLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG--TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNS 338 (729)
Q Consensus 262 ~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~ 338 (729)
. ......+..++.++.++|++||+||||++.... ..+...+++|+||+...+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~----------------------- 175 (264)
T cd07487 119 DPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP----------------------- 175 (264)
T ss_pred CCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-----------------------
Confidence 3 456778888888999999999999999997765 55677899999999653321
Q ss_pred CCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHH
Q 004809 339 SLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDI 418 (729)
Q Consensus 339 ~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 418 (729)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCce
Q 004809 419 LKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFN 498 (729)
Q Consensus 419 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 498 (729)
....++.||++||+.+.+ +||||+|||.+|+++.+..... .......|.
T Consensus 176 -------------------------~~~~~~~~s~~G~~~~~~--~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~ 224 (264)
T cd07487 176 -------------------------HDDGISYFSSRGPTGDGR--IKPDVVAPGENIVSCRSPGGNP----GAGVGSGYF 224 (264)
T ss_pred -------------------------CCccccccccCCCCCCCC--cCCCEEccccceEecccccccc----CCCCCCceE
Confidence 002468899999999876 9999999999999986543110 112236789
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 499 LQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 499 ~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
.++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 225 ~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 225 EMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred eccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=374.72 Aligned_cols=220 Identities=26% Similarity=0.310 Sum_probs=166.1
Q ss_pred CCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC---CChHHHHHHHHHHHHcCCcEEEeecC
Q 004809 182 RDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG---SFTSDIIAAIDQAIIDGVDVLSMSLG 258 (729)
Q Consensus 182 ~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~il~ai~~A~~~gvdVIn~SlG 258 (729)
.|+.+|||||||||||+..++ ..+.||||+|+|+++|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 367899999999999985322 2248999999999999986542 23457999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHH-HHhCCcEEEEecCCCCCCCCCcCC---CCCceEEEcccccCccccEEEEeCCCcEEEeeeec
Q 004809 259 LDGVDLYEDPVAIATFA-AIEKNIFVSTSAGNQGPFIGTLHN---GIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLY 334 (729)
Q Consensus 259 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~t~~~---~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~ 334 (729)
..........+...+.+ +.++||++|+||||+|+...++.. ..+.+|+|||+...........+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~------------ 321 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL------------ 321 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc------------
Confidence 76432222234444444 447899999999999987766542 46899999996422111000000
Q ss_pred CCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechh
Q 004809 335 PGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSK 414 (729)
Q Consensus 335 ~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~ 414 (729)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCC
Q 004809 415 TGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSF 494 (729)
Q Consensus 415 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 494 (729)
..+..+.++.||||||+.+++ +||||+|||+.|.+.-... .
T Consensus 322 --------------------------~~~~~~~~~~fSSrGP~~dG~--~~pdI~APG~~I~s~p~~~-----------~ 362 (412)
T cd04857 322 --------------------------REKLPGNQYTWSSRGPTADGA--LGVSISAPGGAIASVPNWT-----------L 362 (412)
T ss_pred --------------------------ccccCCccccccccCCcccCC--cCceEEeCCCcEEEcccCC-----------C
Confidence 011234689999999999987 9999999999998752111 1
Q ss_pred CCceeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccC
Q 004809 495 SNFNLQSGTSMACPQAAGIAALLRG----AHPEWSPAAIRSAIMTTSDST 540 (729)
Q Consensus 495 ~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~sp~~Ik~~L~~TA~~~ 540 (729)
..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 363 ~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 363 QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 4689999999999999999999975 579999999999999999863
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=356.42 Aligned_cols=232 Identities=32% Similarity=0.426 Sum_probs=193.4
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCC
Q 004809 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMN 179 (729)
Q Consensus 100 ~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 179 (729)
.|..+++|+||+|+|||+||+++||+|.++ +...+.+... .
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------~ 57 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------D 57 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC------------C
Confidence 667789999999999999999999999764 1111222211 1
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc-----CCcEE
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID-----GVDVL 253 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~-----gvdVI 253 (729)
...|..+|||||||||+|+. .||||+|+|+.+|+++..+ ...++++++|+++++. +++||
T Consensus 58 ~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ii 123 (255)
T cd04077 58 PDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVA 123 (255)
T ss_pred CCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEE
Confidence 25678899999999999862 6999999999999998775 6778899999999987 48999
Q ss_pred EeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeee
Q 004809 254 SMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI-GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLS 332 (729)
Q Consensus 254 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~ 332 (729)
|+|||... ...+..++..+.++|+++|+||||+|... ...+...+++|+||+.+.+
T Consensus 124 n~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------------------- 180 (255)
T cd04077 124 NMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------------------- 180 (255)
T ss_pred EeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------------------
Confidence 99999754 45666777789999999999999999765 4556788999999985421
Q ss_pred ecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEec
Q 004809 333 LYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMN 412 (729)
Q Consensus 333 ~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 412 (729)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCC
Q 004809 413 SKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKL 492 (729)
Q Consensus 413 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~ 492 (729)
...+.||++||.. ||+|||.+|+++....
T Consensus 181 ---------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~---------- 209 (255)
T cd04077 181 ---------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS---------- 209 (255)
T ss_pred ---------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC----------
Confidence 1367899999875 8999999999987642
Q ss_pred CCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004809 493 SFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDS 539 (729)
Q Consensus 493 ~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~ 539 (729)
...|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 210 -~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 210 -DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred -CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 2578999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=365.24 Aligned_cols=262 Identities=27% Similarity=0.252 Sum_probs=185.5
Q ss_pred EEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCChhH
Q 004809 111 IIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTH 190 (729)
Q Consensus 111 vVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTH 190 (729)
+|||||||||.+||+|.+. +.....+... .....|..|||||
T Consensus 2 ~VaviDtGi~~~hp~l~~~---------------------------~~~~~~~~~~-----------~~~~~d~~gHGT~ 43 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA---------------------------LAEDDLDSDE-----------PGWTADDLGHGTA 43 (291)
T ss_pred EEEEecCCCCCCChhhhhh---------------------------hccccccccC-----------CCCcCCCCCChHH
Confidence 7999999999999999864 1111111100 0115688999999
Q ss_pred HHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-----CChHHHHHHHHHHHHcC---CcEEEeecCCCCC
Q 004809 191 TSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-----SFTSDIIAAIDQAIIDG---VDVLSMSLGLDGV 262 (729)
Q Consensus 191 VAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~il~ai~~A~~~g---vdVIn~SlG~~~~ 262 (729)
|||||++....+ ....|+||+|+|+.+|++...| .+..++++||+|+++.+ ++|||||||....
T Consensus 44 vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~ 115 (291)
T cd04847 44 VAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLP 115 (291)
T ss_pred HHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCC
Confidence 999999764321 1237999999999999998763 45678999999999753 5999999998653
Q ss_pred CCC--CcHHHHHHH-HHHhCCcEEEEecCCCCCCCCC------------cCCCCCceEEEcccccCccccEEEEeCCCcE
Q 004809 263 DLY--EDPVAIATF-AAIEKNIFVSTSAGNQGPFIGT------------LHNGIPWVMTVAAGTMDRELGATLTLGNGNT 327 (729)
Q Consensus 263 ~~~--~~~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~t------------~~~~~p~vitVgAst~d~~~~~~~~l~~g~~ 327 (729)
... ...+..++. .+.++|++||+||||+|..... .+..++++|+|||.+.+......
T Consensus 116 ~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~-------- 187 (291)
T cd04847 116 IDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR-------- 187 (291)
T ss_pred ccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc--------
Confidence 221 123444443 3568999999999999976543 24567899999997654321000
Q ss_pred EEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecccccc
Q 004809 328 VTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFP 407 (729)
Q Consensus 328 ~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p 407 (729)
+.+
T Consensus 188 ----s~~------------------------------------------------------------------------- 190 (291)
T cd04847 188 ----ARY------------------------------------------------------------------------- 190 (291)
T ss_pred ----ccc-------------------------------------------------------------------------
Confidence 000
Q ss_pred EEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCc--
Q 004809 408 AVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAV-- 485 (729)
Q Consensus 408 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~-- 485 (729)
+.......+.||||||..... +||||+|||++|.+........
T Consensus 191 ---------------------------------~~~~~~~~~~fs~~Gp~~~~~--~KPDl~apG~~i~~~~~~~~~~~~ 235 (291)
T cd04847 191 ---------------------------------SAVGPAPAGATTSSGPGSPGP--IKPDVVAFGGNLAYDPSGNAADGD 235 (291)
T ss_pred ---------------------------------cccccccCCCccccCCCCCCC--cCCcEEeeCCceeecCCCCCccCc
Confidence 000011223499999999876 9999999999998864421100
Q ss_pred ---cccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 486 ---SQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 486 ---~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 236 LSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 00001112367999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=352.01 Aligned_cols=241 Identities=34% Similarity=0.440 Sum_probs=200.0
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
...+|..+ +|+||+|+|||+||+++||+|... ++...+++.+..
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~~--------- 61 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDND--------- 61 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCCC---------
Confidence 35689988 999999999999999999998432 222223332211
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEe
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSM 255 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~ 255 (729)
..+.|..+|||||||||++...... | +.|+||+|+|+.+|+++..+ +...+++++|+++++.|++|||+
T Consensus 62 --~~~~d~~~HGT~vagii~~~~~~~~---~-----~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~ 131 (260)
T cd07484 62 --SDAMDDNGHGTHVAGIIAAATNNGT---G-----VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINL 131 (260)
T ss_pred --CCCCCCCCcHHHHHHHHhCccCCCC---c-----eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 2356788999999999998743321 2 47999999999999998765 77889999999999999999999
Q ss_pred ecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecC
Q 004809 256 SLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYP 335 (729)
Q Consensus 256 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~ 335 (729)
|||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 132 S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------- 186 (260)
T cd07484 132 SLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD---------------------- 186 (260)
T ss_pred cCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC----------------------
Confidence 999753 4566777777888999999999999998888888999999999985421
Q ss_pred CCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhh
Q 004809 336 GNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKT 415 (729)
Q Consensus 336 ~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~ 415 (729)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCC
Q 004809 416 GDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFS 495 (729)
Q Consensus 416 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 495 (729)
+..+.||++|+.. |+.|||.+|++.... .
T Consensus 187 ------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~-------------~ 215 (260)
T cd07484 187 ------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD-------------G 215 (260)
T ss_pred ------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC-------------C
Confidence 2456889999754 999999999988764 4
Q ss_pred CceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 004809 496 NFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDST 540 (729)
Q Consensus 496 ~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~ 540 (729)
.|..++|||||||+|||++|||++++| |++.+||++|++||+++
T Consensus 216 ~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 216 DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 789999999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=360.11 Aligned_cols=252 Identities=26% Similarity=0.335 Sum_probs=182.3
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
...+|+++++|+||+|+||||||+..|| |...++ .+ ++ .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~---------------~~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QV---------------RV----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cc---------------ee----ecCCC----------
Confidence 3679999999999999999999999998 764321 00 00 00000
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEEee
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMS 256 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn~S 256 (729)
......|..|||||||+++ .||||+|+|+.+|++.. ..+++++||+||++.|++|||||
T Consensus 53 ~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~S 111 (298)
T cd07494 53 ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNS 111 (298)
T ss_pred CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEee
Confidence 0123567889999998865 59999999999999864 56779999999999999999999
Q ss_pred cCCCCCCC----------CCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCc
Q 004809 257 LGLDGVDL----------YEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGN 326 (729)
Q Consensus 257 lG~~~~~~----------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~ 326 (729)
||...... ....+..++..|.++|++||+||||++. .+++..|++|+|||++.+.. +.
T Consensus 112 lG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~ 179 (298)
T cd07494 112 WGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GA 179 (298)
T ss_pred cccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Cc
Confidence 99753211 1335777778889999999999999974 46889999999999754321 00
Q ss_pred EEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccc
Q 004809 327 TVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSF 406 (729)
Q Consensus 327 ~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 406 (729)
.
T Consensus 180 ~------------------------------------------------------------------------------- 180 (298)
T cd07494 180 R------------------------------------------------------------------------------- 180 (298)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcE----------------Ee
Q 004809 407 PAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDV----------------MA 470 (729)
Q Consensus 407 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI----------------~A 470 (729)
......+.|+|+ . .++..|||+ +|
T Consensus 181 ------------------------------------~~~~~~~~~~s~--~--~~g~~~pd~~~~~g~~~~~~~~~~~~A 220 (298)
T cd07494 181 ------------------------------------RASSYASGFRSK--I--YPGRQVPDVCGLVGMLPHAAYLMLPVP 220 (298)
T ss_pred ------------------------------------cccccccCcccc--c--CCCCccCccccccCcCCcccccccccC
Confidence 000001112221 1 112256666 47
Q ss_pred cCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCC
Q 004809 471 PGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDN 542 (729)
Q Consensus 471 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~ 542 (729)
||..|.+++..... .......|..++|||||||||||++|||+|++|.|++++||.+|++||+++..
T Consensus 221 PG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 221 PGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred CCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 99998766532100 01113579999999999999999999999999999999999999999997743
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=350.97 Aligned_cols=253 Identities=34% Similarity=0.361 Sum_probs=186.7
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCCh
Q 004809 109 DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHG 188 (729)
Q Consensus 109 gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 188 (729)
||+|||||+|||++||+|.+. +...+.|.... ........|..+||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~-------~~~~~~~~d~~~HG 46 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR-------RISATEVFDAGGHG 46 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC-------CCCCCCCCCCCCcH
Confidence 799999999999999999764 11111221110 01112355778999
Q ss_pred hHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCcH
Q 004809 189 THTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDP 268 (729)
Q Consensus 189 THVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~~~~ 268 (729)
|||||||+|+.. .+...||||+|+|+.+|++...++..++++++|+++++.+++|||||||..... .+.
T Consensus 47 T~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~ 115 (254)
T cd07490 47 THVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDP 115 (254)
T ss_pred HHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcH
Confidence 999999999854 122479999999999999987778889999999999999999999999975432 455
Q ss_pred HHHHHHHHHh-CCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEEE
Q 004809 269 VAIATFAAIE-KNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVF 347 (729)
Q Consensus 269 ~~~a~~~a~~-~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~ 347 (729)
+...+....+ +|++||+||||+|......+...+++|+|||++.+.......
T Consensus 116 ~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s--------------------------- 168 (254)
T cd07490 116 LEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS--------------------------- 168 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc---------------------------
Confidence 5555444443 599999999999988777788899999999975432100000
Q ss_pred cCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhcC
Q 004809 348 MDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIEN 427 (729)
Q Consensus 348 ~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 427 (729)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccchh
Q 004809 428 NATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMAC 507 (729)
Q Consensus 428 ~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAa 507 (729)
..........+++|... ....||||.|||.+|+++.... .....|..++||||||
T Consensus 169 ---------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~Aa 223 (254)
T cd07490 169 ---------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAA 223 (254)
T ss_pred ---------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHH
Confidence 00000112223333322 2348999999999999865321 1135799999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 508 PQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 508 P~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
|+|||++|||+|++|+|++.+||++|++||+
T Consensus 224 P~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 224 PHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=355.48 Aligned_cols=207 Identities=29% Similarity=0.367 Sum_probs=167.2
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHH----------HcC
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAI----------IDG 249 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~----------~~g 249 (729)
...+..+|||||||||||...+ ..| +.||||+|+|+.+|+++..+.+.+++++|++|++ .++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~---~~~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNN---GVG-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCC---CCC-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 3557789999999999998542 223 3799999999999999887778899999999998 457
Q ss_pred CcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEEcccccCccccEEEEeCCCcEE
Q 004809 250 VDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI-GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTV 328 (729)
Q Consensus 250 vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~ 328 (729)
++|||||||..... ...+..++..+.++|++||+||||+|... ...+...+++|+||+++.+
T Consensus 138 ~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 200 (285)
T cd07496 138 AKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR--------------- 200 (285)
T ss_pred CeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC---------------
Confidence 99999999975421 45677778888999999999999999775 5667788999999985421
Q ss_pred EeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccE
Q 004809 329 TGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPA 408 (729)
Q Consensus 329 ~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~ 408 (729)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCcc--
Q 004809 409 VFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVS-- 486 (729)
Q Consensus 409 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~-- 486 (729)
+.++.||++||.. ||.|||++|.+.........
T Consensus 201 -------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~ 235 (285)
T cd07496 201 -------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSN 235 (285)
T ss_pred -------------------------------------CCcccccCCCCCC--------CEEeCCCCccccCCCCcccccc
Confidence 2467899999865 99999999998876432110
Q ss_pred ccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004809 487 QTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTT 536 (729)
Q Consensus 487 ~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~T 536 (729)
..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 236 ~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 236 TGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 00111123578999999999999999999999999999999999999986
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=357.72 Aligned_cols=277 Identities=29% Similarity=0.321 Sum_probs=200.8
Q ss_pred CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCC
Q 004809 103 VSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPR 182 (729)
Q Consensus 103 ~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 182 (729)
++++|+||+|||||+|||++||+|.+... .+.. ..++++.....+.. ...
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~--------------~~~ 51 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD--------------TKD 51 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC--------------CCC
Confidence 57899999999999999999999986421 0000 13334443332221 122
Q ss_pred CCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC--CChHHHHHHHHHHHHcCCcEEEeecCCC
Q 004809 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG--SFTSDIIAAIDQAIIDGVDVLSMSLGLD 260 (729)
Q Consensus 183 D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~il~ai~~A~~~gvdVIn~SlG~~ 260 (729)
|..+|||||||||+|+....... ..+.|+||+|+|+.+|++...+ ....++..+++++.+.+++|||+|||..
T Consensus 52 d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~ 126 (293)
T cd04842 52 DVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSP 126 (293)
T ss_pred CCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCC
Confidence 78999999999999986543211 1248999999999999998765 5666788999999999999999999986
Q ss_pred CCCCCCcHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecC
Q 004809 261 GVDLYEDPVAIATFAAI-E-KNIFVSTSAGNQGPFIG---TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYP 335 (729)
Q Consensus 261 ~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~ 335 (729)
.... ......++.++. + +|++||+||||+|.... ..+...+++|+|||++.+.......
T Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~~--------------- 190 (293)
T cd04842 127 VNNG-YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGEG--------------- 190 (293)
T ss_pred Cccc-cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccccc---------------
Confidence 5321 223333333333 3 79999999999997654 5667889999999976543210000
Q ss_pred CCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhh
Q 004809 336 GNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKT 415 (729)
Q Consensus 336 ~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~ 415 (729)
|.
T Consensus 191 ---------------~~--------------------------------------------------------------- 192 (293)
T cd04842 191 ---------------GL--------------------------------------------------------------- 192 (293)
T ss_pred ---------------cc---------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCC
Q 004809 416 GDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFS 495 (729)
Q Consensus 416 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 495 (729)
+ .......++.||++||....+ +||||+|||++|++++..... .......
T Consensus 193 ------~------------------~~~~~~~~~~~S~~G~~~~~~--~~pdv~ApG~~i~~~~~~~~~----~~~~~~~ 242 (293)
T cd04842 193 ------G------------------QSDNSDTVASFSSRGPTYDGR--IKPDLVAPGTGILSARSGGGG----IGDTSDS 242 (293)
T ss_pred ------c------------------ccCCCCccccccCcCCCCCCC--cCCCEECCCCCeEeccCCCCC----CCCCChh
Confidence 0 012234689999999998876 999999999999999754200 0111235
Q ss_pred CceeeccccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 004809 496 NFNLQSGTSMACPQAAGIAALLRGAH-----P---EWSPAAIRSAIMTTSD 538 (729)
Q Consensus 496 ~y~~~sGTSMAaP~VAG~aALl~q~~-----P---~~sp~~Ik~~L~~TA~ 538 (729)
.|..++|||||||+|||++|||+|++ | .+++.+||++|++||+
T Consensus 243 ~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 243 AYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred heeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 78999999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=354.41 Aligned_cols=264 Identities=27% Similarity=0.349 Sum_probs=183.4
Q ss_pred cCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCC
Q 004809 102 PVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSP 181 (729)
Q Consensus 102 ~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 181 (729)
..+++|+||+|||||+|||.+||+|.+.. +...+|.+. ...
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~~------------~~~ 42 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVGG------------EDV 42 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCCC------------CCC
Confidence 35789999999999999999999998641 111122211 124
Q ss_pred CCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCC
Q 004809 182 RDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLD 260 (729)
Q Consensus 182 ~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~ 260 (729)
.|..+|||||||||+|+... +...||||+|+|+.+|++...+ +...++++||+||++.|++|||+|||..
T Consensus 43 ~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~ 113 (297)
T cd07480 43 QDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGAD 113 (297)
T ss_pred CCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCC
Confidence 67889999999999997543 1236999999999999997654 7777899999999999999999999975
Q ss_pred CCCC----------CCcHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCcC-----CCCCceEEEccc
Q 004809 261 GVDL----------YEDPVAIATFAA---------------IEKNIFVSTSAGNQGPFIGTLH-----NGIPWVMTVAAG 310 (729)
Q Consensus 261 ~~~~----------~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~t~~-----~~~p~vitVgAs 310 (729)
.... ....+......+ .++|++||+||||+|....... ...+++++|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V 193 (297)
T cd07480 114 FPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAV 193 (297)
T ss_pred CcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEE
Confidence 4111 111222222223 6789999999999986543221 112333444332
Q ss_pred ccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEE
Q 004809 311 TMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGV 390 (729)
Q Consensus 311 t~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i 390 (729)
...
T Consensus 194 ~~~----------------------------------------------------------------------------- 196 (297)
T cd07480 194 GAL----------------------------------------------------------------------------- 196 (297)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 110
Q ss_pred EEecCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEe
Q 004809 391 FISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMA 470 (729)
Q Consensus 391 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~A 470 (729)
.....|+++.+... .||||+|
T Consensus 197 -------------------------------------------------------~~~~~~~~~~~~~~----~~~dv~A 217 (297)
T cd07480 197 -------------------------------------------------------GRTGNFSAVANFSN----GEVDIAA 217 (297)
T ss_pred -------------------------------------------------------CCCCCccccCCCCC----CceEEEe
Confidence 01122333332211 5789999
Q ss_pred cCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccC
Q 004809 471 PGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDI 550 (729)
Q Consensus 471 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~ 550 (729)
||.+|+++++. ..|..++|||||||+|||++|||+|++|++++.+++.+|+.......... .
T Consensus 218 pG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~-~---- 279 (297)
T cd07480 218 PGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQ-F---- 279 (297)
T ss_pred CCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCC-C----
Confidence 99999998774 47999999999999999999999999999999888888774322211000 0
Q ss_pred CCCCCCCCCCCCCccccCcc
Q 004809 551 GDDNKPATPIAMGAGHINPD 570 (729)
Q Consensus 551 ~~~~~~~~~~~~G~G~vn~~ 570 (729)
.....+.++|+|++++.
T Consensus 280 ---~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 280 ---APGLDLPDRGVGLGLAP 296 (297)
T ss_pred ---CCCCChhhcCCceeecC
Confidence 12235668999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=344.23 Aligned_cols=249 Identities=32% Similarity=0.413 Sum_probs=190.5
Q ss_pred CCcEEEEEcccCCCCCCCCCCCCCCCCCCccccc---cccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCC
Q 004809 108 KDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGE---CESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDA 184 (729)
Q Consensus 108 ~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~---~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~ 184 (729)
+||+|||||||||++||+|.++ .|... +..+.+.. ++..+... .+++.. ....++.|.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~-----~~~~~~~d~ 62 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDD---GNGYVDDI----YGWNFV-----NNDNDPMDD 62 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccC---CCCcccCC----Cccccc-----CCCCCCCCC
Confidence 6899999999999999999975 23211 11111100 00000000 011110 122356788
Q ss_pred CCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCCCCC
Q 004809 185 NGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVD 263 (729)
Q Consensus 185 ~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~ 263 (729)
.+|||||||||+|+...... +.|+||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||....
T Consensus 63 ~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~- 133 (259)
T cd07473 63 NGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP- 133 (259)
T ss_pred CCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC-
Confidence 99999999999998543322 37999999999999998776 888899999999999999999999997532
Q ss_pred CCCcHHHHHHHHHHhCCcEEEEecCCCCCCC---CCcCC--CCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCC
Q 004809 264 LYEDPVAIATFAAIEKNIFVSTSAGNQGPFI---GTLHN--GIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNS 338 (729)
Q Consensus 264 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~t~~~--~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~ 338 (729)
...+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 134 --~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~------------------------- 186 (259)
T cd07473 134 --SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN------------------------- 186 (259)
T ss_pred --CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-------------------------
Confidence 56777888889999999999999998752 23333 45789999885421
Q ss_pred CCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHH
Q 004809 339 SLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDI 418 (729)
Q Consensus 339 ~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 418 (729)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCce
Q 004809 419 LKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFN 498 (729)
Q Consensus 419 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 498 (729)
+.++.||++||. +||+.|||.++++.... ..|.
T Consensus 187 ---------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-------------~~~~ 219 (259)
T cd07473 187 ---------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG-------------GGYG 219 (259)
T ss_pred ---------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC-------------CcEE
Confidence 245669999984 57999999999996653 5789
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 499 LQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 499 ~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
.++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 220 ~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 220 YMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred EeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=340.95 Aligned_cols=239 Identities=29% Similarity=0.357 Sum_probs=187.6
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCChh
Q 004809 110 IIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGT 189 (729)
Q Consensus 110 vvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 189 (729)
|+|||||+||+++||+|.+.. +++..+.+... .....|..+|||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~-----------~~~~~~~~~HGT 44 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN-----------NDPTSDIDGHGT 44 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC-----------CCCCCCCCCCHH
Confidence 689999999999999998630 01111111110 013567889999
Q ss_pred HHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCCCC-CCCCc
Q 004809 190 HTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLDGV-DLYED 267 (729)
Q Consensus 190 HVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~~~-~~~~~ 267 (729)
||||||+|+..+.. .+.|+||+|+|+.+|++...+ +...+++++++++++.+++|||||||.... ..+..
T Consensus 45 ~vAgiiag~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~ 116 (242)
T cd07498 45 ACAGVAAAVGNNGL--------GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISS 116 (242)
T ss_pred HHHHHHHhccCCCc--------eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHH
Confidence 99999999853221 247999999999999998765 678899999999999999999999997543 23355
Q ss_pred HHHHHHHHHHh-CCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEE
Q 004809 268 PVAIATFAAIE-KNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIV 346 (729)
Q Consensus 268 ~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv 346 (729)
.+..++..+.+ +|+++|+||||+|......++..+++|+||+.+.+
T Consensus 117 ~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--------------------------------- 163 (242)
T cd07498 117 AIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN--------------------------------- 163 (242)
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC---------------------------------
Confidence 66666777778 99999999999998776678889999999985421
Q ss_pred EcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhc
Q 004809 347 FMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIE 426 (729)
Q Consensus 347 ~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 426 (729)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccch
Q 004809 427 NNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506 (729)
Q Consensus 427 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMA 506 (729)
+.++.||++||.. |++|||.++.......... .......|..++|||||
T Consensus 164 -------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~A 212 (242)
T cd07498 164 -------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFA 212 (242)
T ss_pred -------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHH
Confidence 2467899999865 9999999998875442111 11123578899999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004809 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTT 536 (729)
Q Consensus 507 aP~VAG~aALl~q~~P~~sp~~Ik~~L~~T 536 (729)
||+|||++|||+|++|+|++++||++|++|
T Consensus 213 ap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 213 SPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=347.49 Aligned_cols=244 Identities=23% Similarity=0.229 Sum_probs=177.4
Q ss_pred CCCCcCC-CCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 98 SGAWPVS-KFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 98 ~~~w~~~-~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
..+|+.. ..|+||+|+|||+|||.+||+|.++-.. . ..+
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~--------------------------~----~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT--------------------------L----ISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc--------------------------c----cCC----------
Confidence 4578774 4599999999999999999999865110 0 000
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH----cCCcE
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII----DGVDV 252 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~----~gvdV 252 (729)
..+.|..+|||||||||||.. +.+| +.||||+|+|+.+|++. .++++++|++|++ .++.+
T Consensus 45 --~~~~d~~gHGT~VAGiIaa~~----n~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~ 108 (277)
T cd04843 45 --LTDQADSDHGTAVLGIIVAKD----NGIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVIL 108 (277)
T ss_pred --CCCCCCCCCcchhheeeeeec----CCCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEE
Confidence 014577899999999999862 2223 37999999999999975 3456677777776 34678
Q ss_pred EEeecCCCCCC------CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc------------C-CCCCceEEEcccccC
Q 004809 253 LSMSLGLDGVD------LYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL------------H-NGIPWVMTVAAGTMD 313 (729)
Q Consensus 253 In~SlG~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~------------~-~~~p~vitVgAst~d 313 (729)
||||||..... .....+..++.+|.++|+++|+||||++...... + ...|++|+|||++.+
T Consensus 109 in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~ 188 (277)
T cd04843 109 LEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST 188 (277)
T ss_pred EEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC
Confidence 99999975422 1233455677788899999999999998642111 1 123578888875421
Q ss_pred ccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEe
Q 004809 314 RELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFIS 393 (729)
Q Consensus 314 ~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~ 393 (729)
.
T Consensus 189 ~------------------------------------------------------------------------------- 189 (277)
T cd04843 189 T------------------------------------------------------------------------------- 189 (277)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCC
Q 004809 394 DFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGD 473 (729)
Q Consensus 394 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~ 473 (729)
...++.||++||.. ||.|||+
T Consensus 190 ---------------------------------------------------~~~~~~fSn~G~~v--------di~APG~ 210 (277)
T cd04843 190 ---------------------------------------------------GHTRLAFSNYGSRV--------DVYGWGE 210 (277)
T ss_pred ---------------------------------------------------CCccccccCCCCcc--------ceEcCCC
Confidence 01368999999965 9999999
Q ss_pred CEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 004809 474 SILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRG----A-HPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 474 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~-~P~~sp~~Ik~~L~~TA~ 538 (729)
+|++++...... ........|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 211 ~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 211 NVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred CeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999998754211 0011123457899999999999999999975 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=346.84 Aligned_cols=289 Identities=26% Similarity=0.402 Sum_probs=232.8
Q ss_pred eEEEec---ceeeEEEEEeCHHHHHHhhcCCCeEEEEcCCccCCCC-----CCCCcccCCCCCCC-------CCc----C
Q 004809 43 LLYTYS---HVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPHT-----THSSQFLGLNPKSG-------AWP----V 103 (729)
Q Consensus 43 ~~~~y~---~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~gl~~~~~-------~w~----~ 103 (729)
+.+.|. .+|+|+.-.++.+-+..+++.|-++.++++...+... .+...-|||.++.. -|- +
T Consensus 135 i~~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~ 214 (501)
T KOG1153|consen 135 IKNVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE 214 (501)
T ss_pred cccccccccchhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEee
Confidence 445553 3899999999999999999999999999988776543 12222255544321 121 1
Q ss_pred CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCC
Q 004809 104 SKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRD 183 (729)
Q Consensus 104 ~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D 183 (729)
-..|+||...|+||||+.+||+|.++ +.| |.| ++ . -....|
T Consensus 215 ~~aG~gvtaYv~DTGVni~H~dFegR------a~w-Ga~-----i~--------------~-------------~~~~~D 255 (501)
T KOG1153|consen 215 IDAGKGVTAYVLDTGVNIEHPDFEGR------AIW-GAT-----IP--------------P-------------KDGDED 255 (501)
T ss_pred cccCCCeEEEEecccccccccccccc------eec-ccc-----cC--------------C-------------CCcccc
Confidence 24699999999999999999999986 233 111 10 0 023568
Q ss_pred CCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc---------CCcEE
Q 004809 184 ANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID---------GVDVL 253 (729)
Q Consensus 184 ~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~---------gvdVI 253 (729)
++||||||||+|+++. .|||.+++|+++||+.++| +..+++++++|++++. +..|.
T Consensus 256 ~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~ 321 (501)
T KOG1153|consen 256 CNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVA 321 (501)
T ss_pred cCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEE
Confidence 9999999999999883 6999999999999999998 8999999999999975 48999
Q ss_pred EeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeee
Q 004809 254 SMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI-GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLS 332 (729)
Q Consensus 254 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~ 332 (729)
|||+|+. ..-++..|+..|.+.||++++||||+..+. .+.++.+..+|||||++..
T Consensus 322 NlSlGg~----~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------------- 378 (501)
T KOG1153|consen 322 NLSLGGF----RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------------- 378 (501)
T ss_pred EEecCCc----ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-------------------
Confidence 9999975 455677888899999999999999998765 4667889999999997532
Q ss_pred ecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEec
Q 004809 333 LYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMN 412 (729)
Q Consensus 333 ~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 412 (729)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCC
Q 004809 413 SKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKL 492 (729)
Q Consensus 413 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~ 492 (729)
+.+|.||+||++. ||.|||++|+|+|.+.
T Consensus 379 ---------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs---------- 407 (501)
T KOG1153|consen 379 ---------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGS---------- 407 (501)
T ss_pred ---------------------------------cchhhhcCcccee--------eeecCchhhhhhhhcC----------
Confidence 2679999999999 9999999999999975
Q ss_pred CCCCceeeccccchhHHHHHHHHHHHhhCCC---------CCHHHHHHHHHhcccc
Q 004809 493 SFSNFNLQSGTSMACPQAAGIAALLRGAHPE---------WSPAAIRSAIMTTSDS 539 (729)
Q Consensus 493 ~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~---------~sp~~Ik~~L~~TA~~ 539 (729)
.....++||||||+|||||++|..++.+|. .||.++|..+..-..+
T Consensus 408 -~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 408 -NNATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred -ccchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence 256789999999999999999999999883 3888998888776553
|
|
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=330.51 Aligned_cols=226 Identities=35% Similarity=0.486 Sum_probs=185.0
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCCh
Q 004809 109 DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHG 188 (729)
Q Consensus 109 gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 188 (729)
||+|||||+||+++||+|.+. ++..+.|..... ....|..+||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~~----------~~~~~~~~HG 43 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDDN----------NDYQDGNGHG 43 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCCC----------CCCCCCCCCH
Confidence 799999999999999999864 111222221100 2356788999
Q ss_pred hHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCc
Q 004809 189 THTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYED 267 (729)
Q Consensus 189 THVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~~~ 267 (729)
|||||+|+|..... .+.|+||+|+|+.+|++...+ +...++++++++|++.|++|||+|||... ...
T Consensus 44 T~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~ 111 (229)
T cd07477 44 THVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSP 111 (229)
T ss_pred HHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCH
Confidence 99999999975322 238999999999999998776 66789999999999999999999999743 344
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCCCCc--CCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeE
Q 004809 268 PVAIATFAAIEKNIFVSTSAGNQGPFIGTL--HNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPI 345 (729)
Q Consensus 268 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~--~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~l 345 (729)
.+..++..+.++|+++|+||||++...... ++..+++|+||+++.+
T Consensus 112 ~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------------------- 159 (229)
T cd07477 112 ALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------------------- 159 (229)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------------------
Confidence 566666788899999999999999776554 7888999999985422
Q ss_pred EEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhh
Q 004809 346 VFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKI 425 (729)
Q Consensus 346 v~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 425 (729)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccc
Q 004809 426 ENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSM 505 (729)
Q Consensus 426 ~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSM 505 (729)
..+..||++|+.. |+.|||.+|+++++. ..|..++||||
T Consensus 160 --------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~GTS~ 198 (229)
T cd07477 160 --------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLSGTSM 198 (229)
T ss_pred --------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEccHHH
Confidence 1346789999854 999999999998874 47889999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004809 506 ACPQAAGIAALLRGAHPEWSPAAIRSAIMTT 536 (729)
Q Consensus 506 AaP~VAG~aALl~q~~P~~sp~~Ik~~L~~T 536 (729)
|||+|||++|||+|++|+++|.+||++|++|
T Consensus 199 Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 199 ATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=350.51 Aligned_cols=273 Identities=36% Similarity=0.489 Sum_probs=205.5
Q ss_pred EEEEEcccCCCCCCCCC-CCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCChh
Q 004809 111 IIGVVDTGVWPESESYN-DGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGT 189 (729)
Q Consensus 111 vVgVIDtGid~~Hp~f~-~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 189 (729)
+|||||+|||++||+|. ++ + ...++.+.+.|.+.. .......|..+|||
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~--------~~~~~~~~~~~HGT 50 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN--------PNPSPSDDDNGHGT 50 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB--------STTTSSSTSSSHHH
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC--------CCcCccccCCCccc
Confidence 69999999999999998 33 0 111233344444332 11134567889999
Q ss_pred HHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHH-HcCCcEEEeecCCCC--C-CCC
Q 004809 190 HTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAI-IDGVDVLSMSLGLDG--V-DLY 265 (729)
Q Consensus 190 HVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~-~~gvdVIn~SlG~~~--~-~~~ 265 (729)
||||+|+|.. . .+..+ ..|+||+|+|+.+|++...+....+++++|++++ +.+++|||+|||... . ...
T Consensus 51 ~va~ii~~~~-~-~~~~~-----~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~ 123 (282)
T PF00082_consen 51 HVAGIIAGNG-G-NNGPG-----INGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSY 123 (282)
T ss_dssp HHHHHHHHTT-S-SSSSS-----ETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHH
T ss_pred hhhhhccccc-c-ccccc-----cccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccc
Confidence 9999999986 2 22222 3799999999999998877777888999999999 889999999998722 1 122
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCce
Q 004809 266 EDPVAIATFAAIEKNIFVSTSAGNQGPFIG---TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLID 342 (729)
Q Consensus 266 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~ 342 (729)
.+.+..+...+.++|+++|+||||+|.... ..+...+++|+||+.+.+
T Consensus 124 ~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~----------------------------- 174 (282)
T PF00082_consen 124 SDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN----------------------------- 174 (282)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT-----------------------------
T ss_pred ccccccccccccccCcceeeccccccccccccccccccccccccccccccc-----------------------------
Confidence 334555566888999999999999987654 355666888999984311
Q ss_pred eeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHH
Q 004809 343 FPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDY 422 (729)
Q Consensus 343 ~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 422 (729)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCcEEEEEecceeecCCCCCceecccCCCCCC-CCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeec
Q 004809 423 IKIENNATATIQFQKTELGTKPAPSVASYSSRGPSI-SCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQS 501 (729)
Q Consensus 423 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~-~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 501 (729)
..++.||++|+.. ..+ +||||+|||.+|++.++... ...|..++
T Consensus 175 -----------------------~~~~~~s~~g~~~~~~~--~~~di~a~G~~i~~~~~~~~----------~~~~~~~~ 219 (282)
T PF00082_consen 175 -----------------------GQPASYSNYGGPSDDGR--IKPDIAAPGGNILSAVPGSD----------RGSYTSFS 219 (282)
T ss_dssp -----------------------SSBSTTSSBSTTETTCT--TCEEEEEECSSEEEEETTTE----------SEEEEEEE
T ss_pred -----------------------ccccccccccccccccc--cccccccccccccccccccc----------cccccccC
Confidence 1457899997544 444 99999999999998887531 03578899
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCC
Q 004809 502 GTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574 (729)
Q Consensus 502 GTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 574 (729)
|||||||+|||++|||+|++|+|++.+||.+|++||+...... .......||||+||+.+|++
T Consensus 220 GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~----------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 220 GTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN----------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp SHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT----------SSSSHHHHTTSBE-HHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC----------CCCCCCCccCChhCHHHHhC
Confidence 9999999999999999999999999999999999999886211 12345678999999999864
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=341.15 Aligned_cols=251 Identities=27% Similarity=0.295 Sum_probs=175.8
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccc--cccccCCCCccCCCCCCCCCC
Q 004809 109 DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNK--GLLAKNPTITIAMNSPRDANG 186 (729)
Q Consensus 109 gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~--~~~~~~~~~~~~~~~~~D~~g 186 (729)
.|+|||||||||++||+|.+.-.. ..+.+.. .+.......+.+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 489999999999999999863100 0000100 000000001111234567889
Q ss_pred ChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCC-ChHHHHHHHHHHHHcCCcEEEeecCCCCCCCC
Q 004809 187 HGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLY 265 (729)
Q Consensus 187 HGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~ 265 (729)
|||||||+|+|+.. ..||||+|+|+.+|+++..+. ...+++++|++|++++++|||+|||.......
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~ 122 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGG 122 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCc
Confidence 99999999998632 149999999999999987764 88899999999999999999999997542211
Q ss_pred --------CcHHHHHHHHHHhCCcEEEEecCCCCCCCC----------------------CcCCCCCceEEEcccccCcc
Q 004809 266 --------EDPVAIATFAAIEKNIFVSTSAGNQGPFIG----------------------TLHNGIPWVMTVAAGTMDRE 315 (729)
Q Consensus 266 --------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----------------------t~~~~~p~vitVgAst~d~~ 315 (729)
.+.+..++..+.++|++||+||||+|.... ..+...+++|+|||++
T Consensus 123 ~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~---- 198 (294)
T cd07482 123 EYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATD---- 198 (294)
T ss_pred ccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeC----
Confidence 234556666778999999999999996531 1223445555555532
Q ss_pred ccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecC
Q 004809 316 LGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDF 395 (729)
Q Consensus 316 ~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~ 395 (729)
T Consensus 199 -------------------------------------------------------------------------------- 198 (294)
T cd07482 199 -------------------------------------------------------------------------------- 198 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCE
Q 004809 396 DGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSI 475 (729)
Q Consensus 396 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I 475 (729)
..+.++.||++|+. ++|++|||+++
T Consensus 199 ------------------------------------------------~~~~~~~~S~~g~~-------~~~~~apG~~~ 223 (294)
T cd07482 199 ------------------------------------------------NNGNLSSFSNYGNS-------RIDLAAPGGDF 223 (294)
T ss_pred ------------------------------------------------CCCCcCccccCCCC-------cceEECCCCCc
Confidence 22356789999874 46999999988
Q ss_pred EeecCCCC--Ccc-c------cCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHHhc
Q 004809 476 LAAWPSNL--AVS-Q------TNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP-AAIRSAIMTT 536 (729)
Q Consensus 476 ~sa~~~~~--~~~-~------~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp-~~Ik~~L~~T 536 (729)
........ ... . .........|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 224 LLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 53221110 000 0 001123467899999999999999999999999999999 9999999987
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=332.15 Aligned_cols=215 Identities=23% Similarity=0.260 Sum_probs=166.0
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCC
Q 004809 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANG 186 (729)
Q Consensus 107 G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~g 186 (729)
+++|+|||||||||++||+|.++ ++..+.|...... . ........|..|
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~--~--~~~~~~~~d~~g 50 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD--G--NKVSPYYVSADG 50 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC--c--ccCCCCCCCCCC
Confidence 78999999999999999999864 1122222211000 0 000012346889
Q ss_pred ChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-------CChHHHHHHHHHHHHcCCcEEEeecCC
Q 004809 187 HGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-------SFTSDIIAAIDQAIIDGVDVLSMSLGL 259 (729)
Q Consensus 187 HGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~il~ai~~A~~~gvdVIn~SlG~ 259 (729)
|||||||||+ |+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||.
T Consensus 51 HGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~ 112 (247)
T cd07491 51 HGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTI 112 (247)
T ss_pred cHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeec
Confidence 9999999994 799999999999997643 456789999999999999999999997
Q ss_pred CCCC---CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-C--cCCCCCceEEEcccccCccccEEEEeCCCcEEEeeee
Q 004809 260 DGVD---LYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG-T--LHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSL 333 (729)
Q Consensus 260 ~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-t--~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~ 333 (729)
.... .....+..++.+|.++|++||+||||+|.... + .+...|++|+|||.+.++
T Consensus 113 ~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~g------------------- 173 (247)
T cd07491 113 KKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADEDG------------------- 173 (247)
T ss_pred ccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCCC-------------------
Confidence 5432 12567788888999999999999999997654 3 345678999999965321
Q ss_pred cCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEech
Q 004809 334 YPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNS 413 (729)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~ 413 (729)
T Consensus 174 -------------------------------------------------------------------------------- 173 (247)
T cd07491 174 -------------------------------------------------------------------------------- 173 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCC
Q 004809 414 KTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLS 493 (729)
Q Consensus 414 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 493 (729)
.++.||++|+.. |+.|||++|+++++.. .
T Consensus 174 ---------------------------------~~~~~S~~g~~v--------d~~APG~~i~s~~~~~----------~ 202 (247)
T cd07491 174 ---------------------------------GADAPVGDEDRV--------DYILPGENVEARDRPP----------L 202 (247)
T ss_pred ---------------------------------CCccccCCCCcc--------eEEeCCCceecCCcCC----------C
Confidence 456789998765 9999999999987521 1
Q ss_pred CCCceeeccccchhHHHHHHHHHHHhh
Q 004809 494 FSNFNLQSGTSMACPQAAGIAALLRGA 520 (729)
Q Consensus 494 ~~~y~~~sGTSMAaP~VAG~aALl~q~ 520 (729)
.+.|..++|||||||||||++|||++.
T Consensus 203 ~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 203 SNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 257999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=322.12 Aligned_cols=221 Identities=20% Similarity=0.237 Sum_probs=173.3
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCCh
Q 004809 109 DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHG 188 (729)
Q Consensus 109 gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 188 (729)
||+|||||||||++||+|.+.-. ..+.+..+. .........|..|||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~~------~~~~~~~~~d~~gHG 47 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDLE------IIVVSAEGGDKDGHG 47 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------ccccccccc------cccCCCCCCCCCCcH
Confidence 79999999999999999986411 001110000 000113456788999
Q ss_pred hHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCc
Q 004809 189 THTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYED 267 (729)
Q Consensus 189 THVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~~~ 267 (729)
|||||||++ .+|+++|+.+|+++..+ +...++++||+|+++.|++|||||||..... ...
T Consensus 48 T~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~ 108 (222)
T cd07492 48 TACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFP 108 (222)
T ss_pred HHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCH
Confidence 999999974 35999999999998776 7888999999999999999999999975432 335
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEEE
Q 004809 268 PVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVF 347 (729)
Q Consensus 268 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~ 347 (729)
.+..++.++.++|+++|+||||++.... .++..+.+|+|++...++.
T Consensus 109 ~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~~-------------------------------- 155 (222)
T cd07492 109 LLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADDP-------------------------------- 155 (222)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCCC--------------------------------
Confidence 5667777888899999999999986543 3677889999987532110
Q ss_pred cCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhcC
Q 004809 348 MDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIEN 427 (729)
Q Consensus 348 ~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 427 (729)
T Consensus 156 -------------------------------------------------------------------------------- 155 (222)
T cd07492 156 -------------------------------------------------------------------------------- 155 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccchh
Q 004809 428 NATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMAC 507 (729)
Q Consensus 428 ~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAa 507 (729)
. +.++ .++|+.|||.+|+++++. ..|..++||||||
T Consensus 156 --------------------~---~~~~--------~~~~~~apg~~i~~~~~~-------------~~~~~~~GTS~Aa 191 (222)
T cd07492 156 --------------------K---SFWY--------IYVEFSADGVDIIAPAPH-------------GRYLTVSGNSFAA 191 (222)
T ss_pred --------------------c---cccc--------CCceEEeCCCCeEeecCC-------------CCEEEeccHHHHH
Confidence 0 1111 356999999999998774 4789999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 508 PQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 508 P~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
|+|||++|||+|++|+|+++|||++|+.||+
T Consensus 192 p~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 192 PHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=342.46 Aligned_cols=248 Identities=24% Similarity=0.229 Sum_probs=179.8
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
...+|..+++|+||+|+|||||||++||+|.++-.. ...+.|.....
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~-------- 74 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP-------- 74 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC--------
Confidence 355999999999999999999999999999865110 01111211100
Q ss_pred CCCCC--CCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEE
Q 004809 177 AMNSP--RDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLS 254 (729)
Q Consensus 177 ~~~~~--~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn 254 (729)
...+ .|..+|||||||||+|+.... .| ..||||+|+|+.+|++... .....+..++.++.+ .++|||
T Consensus 75 -~~~~~~~~~~gHGT~vAgiiag~~~~~---~~-----~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin 143 (297)
T cd04059 75 -DPTPRYDDDNSHGTRCAGEIAAVGNNG---IC-----GVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYS 143 (297)
T ss_pred -CCCCccccccccCcceeeEEEeecCCC---cc-----cccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEE
Confidence 0112 278899999999999985322 11 3799999999999998754 344455566665544 469999
Q ss_pred eecCCCCCC----CCCcHHHHHHHHHHh-----CCcEEEEecCCCCCCCCC----cCCCCCceEEEcccccCccccEEEE
Q 004809 255 MSLGLDGVD----LYEDPVAIATFAAIE-----KNIFVSTSAGNQGPFIGT----LHNGIPWVMTVAAGTMDRELGATLT 321 (729)
Q Consensus 255 ~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~t----~~~~~p~vitVgAst~d~~~~~~~~ 321 (729)
+|||..... ........++.++.+ +|++||+||||+|..... .....|++|+|||++.+
T Consensus 144 ~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-------- 215 (297)
T cd04059 144 NSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-------- 215 (297)
T ss_pred CCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--------
Confidence 999975432 122333444445543 699999999999973221 22456889999985422
Q ss_pred eCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceee
Q 004809 322 LGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFF 401 (729)
Q Consensus 322 l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 401 (729)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCC-------
Q 004809 402 LQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDS------- 474 (729)
Q Consensus 402 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~------- 474 (729)
+.++.||++|+.. ++.|||..
T Consensus 216 --------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~ 243 (297)
T cd04059 216 --------------------------------------------GVRASYSEVGSSV--------LASAPSGGSGNPEAS 243 (297)
T ss_pred --------------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCCCCCc
Confidence 2457899999876 79999987
Q ss_pred EEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 475 ILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 475 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
|+++.... ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 244 i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 244 IVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred eEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66655431 0146788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=326.51 Aligned_cols=242 Identities=26% Similarity=0.289 Sum_probs=186.5
Q ss_pred CCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCC
Q 004809 106 FGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDAN 185 (729)
Q Consensus 106 ~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~ 185 (729)
+|+||+|+|||+||+++||+|.+..... ..+..... .......|..
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~~-------~~~~~~~~~~ 46 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVND-------AGYASNGDGD 46 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------------cccccccc-------ccCCCCCCCC
Confidence 5999999999999999999998752110 00000000 0012345678
Q ss_pred CChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC--CChHHHHHHHHHHHHcCCcEEEeecCCCCCC
Q 004809 186 GHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG--SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVD 263 (729)
Q Consensus 186 gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~ 263 (729)
+|||||||+|+|+... ..+.|+||+|+|+.+|+++..+ +....+.++++++++.+++|||+|||.....
T Consensus 47 ~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~ 117 (267)
T cd04848 47 SHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAI 117 (267)
T ss_pred ChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcc
Confidence 9999999999998543 2248999999999999998764 5667788999999999999999999986522
Q ss_pred ------------CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc---------CCCCCceEEEcccccCccccEEEEe
Q 004809 264 ------------LYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL---------HNGIPWVMTVAAGTMDRELGATLTL 322 (729)
Q Consensus 264 ------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~---------~~~~p~vitVgAst~d~~~~~~~~l 322 (729)
.....+......+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~-------- 189 (267)
T cd04848 118 DTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG-------- 189 (267)
T ss_pred cccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC--------
Confidence 1455666677788899999999999998654322 23467889999865332
Q ss_pred CCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeec
Q 004809 323 GNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFL 402 (729)
Q Consensus 323 ~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 402 (729)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceec--ccCCCCCCCCCCCccCcEEecCCCEEeecC
Q 004809 403 QSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVAS--YSSRGPSISCPFVLKPDVMAPGDSILAAWP 480 (729)
Q Consensus 403 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--FSS~GP~~~~~~ilKPDI~APG~~I~sa~~ 480 (729)
.... ||++|+... .+++.|||.+|+++.+
T Consensus 190 --------------------------------------------~~~~~~~s~~~~~~~-----~~~~~apG~~i~~~~~ 220 (267)
T cd04848 190 --------------------------------------------TIASYSYSNRCGVAA-----NWCLAAPGENIYSTDP 220 (267)
T ss_pred --------------------------------------------Ccccccccccchhhh-----hheeecCcCceeeccc
Confidence 1222 588887653 3489999999999876
Q ss_pred CCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004809 481 SNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSD 538 (729)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~ 538 (729)
.. ...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 221 ~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 221 DG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred CC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 31 247889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=312.66 Aligned_cols=349 Identities=23% Similarity=0.341 Sum_probs=256.1
Q ss_pred cHHHHHHHHhcccc-cccccccccccccCCCceEEEecceeeEEEEEeCH-----HHHHHhhcCCCeEEEEcCCccCCCC
Q 004809 12 GQHGWYSATLQSVS-GNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTP-----AELEALKSSPGYISSIRDLPVKPHT 85 (729)
Q Consensus 12 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~-----~~~~~L~~~p~V~~V~~~~~~~~~~ 85 (729)
.|+..+++.|.+.. ..-. -..+...-..|..-|.-+-++-.. -+++.|..+|.|+.|.|.+.+..-.
T Consensus 64 ~r~syi~skl~gS~VtnWr-------iipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l 136 (1033)
T KOG4266|consen 64 DRRSYIESKLRGSGVTNWR-------IIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGL 136 (1033)
T ss_pred HHHHHHHHHhhcCCCCcee-------EeeccCccccCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhcc
Confidence 36777777775322 1000 001223344565566666665443 3478899999999999887654311
Q ss_pred ------------CCCCcc------------------cC--C--C--------CCCCCCcCCCCCCCcEEEEEcccCCCCC
Q 004809 86 ------------THSSQF------------------LG--L--N--------PKSGAWPVSKFGKDIIIGVVDTGVWPES 123 (729)
Q Consensus 86 ------------~~s~~~------------------~g--l--~--------~~~~~w~~~~~G~gvvVgVIDtGid~~H 123 (729)
++...+ ++ | . .++-+|.+|++|++|+|||+|||+.-+|
T Consensus 137 ~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~H 216 (1033)
T KOG4266|consen 137 SYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADH 216 (1033)
T ss_pred cccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCC
Confidence 000000 00 0 0 1234999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCChhHHHHHhcccCcCCC
Q 004809 124 ESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERA 203 (729)
Q Consensus 124 p~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~ 203 (729)
|.|+.-. ....| -| . ....|..||||.|||+|||..
T Consensus 217 PHFrnvK---ERTNW--------------TN-----------E------------~tLdD~lgHGTFVAGvia~~~---- 252 (1033)
T KOG4266|consen 217 PHFRNVK---ERTNW--------------TN-----------E------------DTLDDNLGHGTFVAGVIAGRN---- 252 (1033)
T ss_pred ccccchh---hhcCC--------------cC-----------c------------cccccCcccceeEeeeeccch----
Confidence 9998520 00011 11 0 235578899999999999873
Q ss_pred ccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcE
Q 004809 204 SYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIF 282 (729)
Q Consensus 204 ~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~ 282 (729)
...|.||+++|+++|||.+.. .+.+.+++||.||+....||+|+|+|++ ++.+.++.+.+.+...++|+
T Consensus 253 --------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD~PFVeKVwEltAnNvI 322 (1033)
T KOG4266|consen 253 --------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMDLPFVEKVWELTANNVI 322 (1033)
T ss_pred --------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc--ccccchHHHHHHhhccCcEE
Confidence 137999999999999998766 7889999999999999999999999985 46677888888888899999
Q ss_pred EEEecCCCCCCCCCcCCCCC--ceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccC
Q 004809 283 VSTSAGNQGPFIGTLHNGIP--WVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKV 360 (729)
Q Consensus 283 vV~AAGN~G~~~~t~~~~~p--~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~ 360 (729)
+|.|+||+||-.++..|.+. .+|.||.
T Consensus 323 MvSAiGNDGPLYGTLNNPaDQsDViGVGG--------------------------------------------------- 351 (1033)
T KOG4266|consen 323 MVSAIGNDGPLYGTLNNPADQSDVIGVGG--------------------------------------------------- 351 (1033)
T ss_pred EEEecCCCCcceeecCCcccccceeeecc---------------------------------------------------
Confidence 99999999999998887654 3444443
Q ss_pred CceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceee
Q 004809 361 GQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTEL 440 (729)
Q Consensus 361 ~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 440 (729)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCceecccCCCCCCC----CCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHH
Q 004809 441 GTKPAPSVASYSSRGPSIS----CPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAAL 516 (729)
Q Consensus 441 ~~~~~~~~a~FSS~GP~~~----~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 516 (729)
.+..+.+|.|||||-+.. +.+.+||||++-|.+|..+... .+...+||||.|+|.|||+++|
T Consensus 352 -IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~L 417 (1033)
T KOG4266|consen 352 -IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCL 417 (1033)
T ss_pred -ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhceeee
Confidence 223447899999997542 3456999999999999776442 5778899999999999999999
Q ss_pred HHh----hCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCCCCcccc
Q 004809 517 LRG----AHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYD 580 (729)
Q Consensus 517 l~q----~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~d 580 (729)
|.+ +.--+.|+.+|++|+..|.++... .-|.||+|++|+.++.+--+-|.
T Consensus 418 LvS~~~qk~dl~NPASmKQaLiegA~kLpg~--------------NMfEQGaGkldLL~syqiL~SYk 471 (1033)
T KOG4266|consen 418 LVSVEAQKKDLLNPASMKQALIEGAAKLPGP--------------NMFEQGAGKLDLLESYQILKSYK 471 (1033)
T ss_pred EeeeheehhhccCHHHHHHHHHhHHhhCCCC--------------chhhccCcchhHHHHHHHHHhcC
Confidence 966 334568999999999999988642 35799999999999876333343
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=296.71 Aligned_cols=238 Identities=27% Similarity=0.359 Sum_probs=178.8
Q ss_pred CCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCC-C--CChHHHHHHHHHHHHcCCcEEEeecCCC
Q 004809 184 ANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNE-G--SFTSDIIAAIDQAIIDGVDVLSMSLGLD 260 (729)
Q Consensus 184 ~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~il~ai~~A~~~gvdVIn~SlG~~ 260 (729)
..-|||||||||+|+..+... ..|+||+|+|+++++.+.. | -+...+.+|+..+++..+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 346999999999999765432 3699999999999997643 3 4566788999999999999999999976
Q ss_pred CC-CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCC---CCCceEEEcccccCccccEEEEeCCCcEEEeeeecCC
Q 004809 261 GV-DLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHN---GIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPG 336 (729)
Q Consensus 261 ~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~---~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~ 336 (729)
.. +.....+...-..+.++|+++|+||||+||.-.|++. ....+|.|||.-......+
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a------------------ 442 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQA------------------ 442 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHh------------------
Confidence 52 3333444443334448899999999999998877764 3457888888422111000
Q ss_pred CCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhH
Q 004809 337 NSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTG 416 (729)
Q Consensus 337 ~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g 416 (729)
T Consensus 443 -------------------------------------------------------------------------------- 442 (1304)
T KOG1114|consen 443 -------------------------------------------------------------------------------- 442 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCC
Q 004809 417 DILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSN 496 (729)
Q Consensus 417 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 496 (729)
..... .+-...+..+|||||+.|+. +-..|+|||+.|-+- |... -..
T Consensus 443 --~y~~~------------------e~vp~~~YtWsSRgP~~DG~--lGVsi~APggAiAsV-P~~t----------lq~ 489 (1304)
T KOG1114|consen 443 --EYSVR------------------EPVPSNPYTWSSRGPCLDGD--LGVSISAPGGAIASV-PQYT----------LQN 489 (1304)
T ss_pred --hhhhh------------------ccCCCCccccccCCCCcCCC--cceEEecCCccccCC-chhh----------hhh
Confidence 00000 01122467899999999987 888999999988553 2110 135
Q ss_pred ceeeccccchhHHHHHHHHHHH----hhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCc
Q 004809 497 FNLQSGTSMACPQAAGIAALLR----GAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKA 572 (729)
Q Consensus 497 y~~~sGTSMAaP~VAG~aALl~----q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 572 (729)
-..|.|||||+|+++|.+|||+ |.+-.|||..||.+|++||++++.- .+|.+|.|+|++.+|
T Consensus 490 ~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i--------------d~faqG~GmlqVdkA 555 (1304)
T KOG1114|consen 490 SQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI--------------DSFAQGQGMLQVDKA 555 (1304)
T ss_pred hhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc--------------chhccCcceeehhHH
Confidence 6789999999999999999985 4578999999999999999988542 578999999999999
Q ss_pred CC
Q 004809 573 LD 574 (729)
Q Consensus 573 l~ 574 (729)
.+
T Consensus 556 yE 557 (1304)
T KOG1114|consen 556 YE 557 (1304)
T ss_pred HH
Confidence 76
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-32 Score=278.02 Aligned_cols=193 Identities=18% Similarity=0.083 Sum_probs=140.7
Q ss_pred CCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHH--HHcCCcEEEeecC
Q 004809 181 PRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQA--IIDGVDVLSMSLG 258 (729)
Q Consensus 181 ~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A--~~~gvdVIn~SlG 258 (729)
..|.++|||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457899999999999997 4677999998765522 1233466777888 5678999999999
Q ss_pred CCCCCC------CCcHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CCcCCCCCceEEEcccccCccccEEEEeCCCc
Q 004809 259 LDGVDL------YEDPVAIATFAAIEK-NIFVSTSAGNQGPFI-----GTLHNGIPWVMTVAAGTMDRELGATLTLGNGN 326 (729)
Q Consensus 259 ~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~-----~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~ 326 (729)
...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||++.....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~---------- 164 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR---------- 164 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc----------
Confidence 764321 223455666666655 999999999999743 2234567889999986532110
Q ss_pred EEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccc
Q 004809 327 TVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSF 406 (729)
Q Consensus 327 ~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 406 (729)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCC--CCCCCCCCCccCcEEecCCCEEeecCCCCC
Q 004809 407 PAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSR--GPSISCPFVLKPDVMAPGDSILAAWPSNLA 484 (729)
Q Consensus 407 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~--GP~~~~~~ilKPDI~APG~~I~sa~~~~~~ 484 (729)
...+.||++ +|+...+ .||||+|||++|++ +.
T Consensus 165 ---------------------------------------~~~s~~sn~~~~~~~~~~--~~~di~APG~~i~s--~~--- 198 (247)
T cd07488 165 ---------------------------------------FFASDVSNAGSEINSYGR--RKVLIVAPGSNYNL--PD--- 198 (247)
T ss_pred ---------------------------------------ceecccccccCCCCCCCC--ceeEEEEeeeeEEC--CC---
Confidence 022445554 4554444 89999999999998 21
Q ss_pred ccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCC------HHHHHHHHHhcc
Q 004809 485 VSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWS------PAAIRSAIMTTS 537 (729)
Q Consensus 485 ~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s------p~~Ik~~L~~TA 537 (729)
+.|..++|||||||||||++|||++++|++. -.++|.+|+.|+
T Consensus 199 ----------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 199 ----------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred ----------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 4688999999999999999999999987665 456777777653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=265.93 Aligned_cols=197 Identities=38% Similarity=0.509 Sum_probs=158.4
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHH-HcCCcEEEeec
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAI-IDGVDVLSMSL 257 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~-~~gvdVIn~Sl 257 (729)
...+..+||||||++|++...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++|||+||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 355778999999999999854321 16999999999999987765 67788999999999 89999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeee
Q 004809 258 GLDGVDLYEDPVAIATFAAIEK-NIFVSTSAGNQGPFIG---TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSL 333 (729)
Q Consensus 258 G~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~ 333 (729)
|..... ....+...+..+.++ |+++|+|+||.+.... ..++..+++|+||+++.+...
T Consensus 110 g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~----------------- 171 (241)
T cd00306 110 GGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTP----------------- 171 (241)
T ss_pred CCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCCc-----------------
Confidence 986433 345566667777777 9999999999998766 477789999999996533210
Q ss_pred cCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEech
Q 004809 334 YPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNS 413 (729)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~ 413 (729)
T Consensus 172 -------------------------------------------------------------------------------- 171 (241)
T cd00306 172 -------------------------------------------------------------------------------- 171 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCC
Q 004809 414 KTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLS 493 (729)
Q Consensus 414 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 493 (729)
...++++| .|||+.|||.++...... .
T Consensus 172 ----------------------------------~~~~~~~~--------~~~~~~apg~~~~~~~~~-----------~ 198 (241)
T cd00306 172 ----------------------------------ASPSSNGG--------AGVDIAAPGGDILSSPTT-----------G 198 (241)
T ss_pred ----------------------------------cCCcCCCC--------CCceEEeCcCCccCcccC-----------C
Confidence 01334333 477999999999875111 1
Q ss_pred CCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004809 494 FSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTT 536 (729)
Q Consensus 494 ~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~T 536 (729)
...+..++|||||||+|||++|||+|++|++++.++|++|++|
T Consensus 199 ~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 199 GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 2578999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=236.21 Aligned_cols=271 Identities=31% Similarity=0.404 Sum_probs=196.6
Q ss_pred CCCCcC--CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCc
Q 004809 98 SGAWPV--SKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTIT 175 (729)
Q Consensus 98 ~~~w~~--~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~ 175 (729)
...|.. +++|+|+.|+|||+||+..||+|.+... ..++|.+..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~---------------------------~~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV---------------------------AGGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhcccc---------------------------cccccccCC--------
Confidence 457887 8999999999999999999999987511 001222111
Q ss_pred cCCC-CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCC-C-CChHHHHHHHHHHHHcC--C
Q 004809 176 IAMN-SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNE-G-SFTSDIIAAIDQAIIDG--V 250 (729)
Q Consensus 176 ~~~~-~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~il~ai~~A~~~g--v 250 (729)
.. ...|..+|||||++++++....+ .....|+||+++++.+|++... | ...++++.+|++++..+ +
T Consensus 175 --~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 245 (508)
T COG1404 175 --PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPA 245 (508)
T ss_pred --CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCC
Confidence 01 24688999999999999842111 1113799999999999999866 5 67778899999999999 9
Q ss_pred cEEEeecCCCCCCCCCcHHHHHHHHHHhCC-cEEEEecCCCCCCCC----CcCCCC--CceEEEcccccCccccEEEEeC
Q 004809 251 DVLSMSLGLDGVDLYEDPVAIATFAAIEKN-IFVSTSAGNQGPFIG----TLHNGI--PWVMTVAAGTMDRELGATLTLG 323 (729)
Q Consensus 251 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~----t~~~~~--p~vitVgAst~d~~~~~~~~l~ 323 (729)
++||||+|..........+..++..++..| +++|+++||.|.... ..+... +.+++|++.+.
T Consensus 246 ~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~----------- 314 (508)
T COG1404 246 DVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL----------- 314 (508)
T ss_pred cEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC-----------
Confidence 999999997522234455566666777777 999999999986652 122222 35666666331
Q ss_pred CCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecc
Q 004809 324 NGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQ 403 (729)
Q Consensus 324 ~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 403 (729)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEe-----e
Q 004809 404 SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILA-----A 478 (729)
Q Consensus 404 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~s-----a 478 (729)
.+.++.||++|+.. ..+++|||.+|.+ .
T Consensus 315 -----------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~ 347 (508)
T COG1404 315 -----------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNT 347 (508)
T ss_pred -----------------------------------------CCccccccccCCCC------CcceeCCCcccccccccee
Confidence 23668899999861 2399999999988 4
Q ss_pred cCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCC
Q 004809 479 WPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHP-EWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPA 557 (729)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P-~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~ 557 (729)
+++. ...|..++||||++|||+|++||+++.+| .+++.+++..+..++.. . ....
T Consensus 348 ~~~~-----------~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~ 403 (508)
T COG1404 348 LPGD-----------GADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-T------------PLSG 403 (508)
T ss_pred eeCC-----------ccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-c------------cCCc
Confidence 4321 02499999999999999999999999999 89999999998888874 0 0111
Q ss_pred CCCCCCccccCccCcCC
Q 004809 558 TPIAMGAGHINPDKALD 574 (729)
Q Consensus 558 ~~~~~G~G~vn~~~Al~ 574 (729)
....++.|..+...+..
T Consensus 404 ~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 404 VDNLVGGGLANLDAAAT 420 (508)
T ss_pred cccccccCccccccccc
Confidence 33456666666555543
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=178.85 Aligned_cols=100 Identities=25% Similarity=0.239 Sum_probs=80.8
Q ss_pred eeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHc---CCcEEEeecCCCCCC---CCCcHHHHHHHHHHhCCcEEEEe
Q 004809 213 ALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIID---GVDVLSMSLGLDGVD---LYEDPVAIATFAAIEKNIFVSTS 286 (729)
Q Consensus 213 ~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~---gvdVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~A 286 (729)
+.||||+|+|+.|++++.. ...++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+||+|
T Consensus 83 ~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~GitvvaA 159 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLAA 159 (361)
T ss_pred HHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 5799999999999997542 45678888888887 999999999975432 13356777778888999999999
Q ss_pred cCCCCCCCC-----------CcCCCCCceEEEcccccCcc
Q 004809 287 AGNQGPFIG-----------TLHNGIPWVMTVAAGTMDRE 315 (729)
Q Consensus 287 AGN~G~~~~-----------t~~~~~p~vitVgAst~d~~ 315 (729)
+||+|.... ..++..||+++||+++....
T Consensus 160 sGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 160 SGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 999997653 34678999999999886554
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-18 Score=174.73 Aligned_cols=306 Identities=18% Similarity=0.238 Sum_probs=180.7
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|..|++|++|.++|+|.||||-||++..+ |+ --..++|... .|.+
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------yn-------aeasydfssn-------dpfp 198 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------YN-------AEASYDFSSN-------DPFP 198 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------cC-------ceeecccccC-------CCCC
Confidence 34899999999999999999999999999753 11 1112222221 1222
Q ss_pred CCCCCC--CCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH-cCCcEEE
Q 004809 178 MNSPRD--ANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII-DGVDVLS 254 (729)
Q Consensus 178 ~~~~~D--~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~-~gvdVIn 254 (729)
+.--.| .+.|||.|||-+++...+ +..| .|||.+.++..+|+++. -+-.|+++|-..--+ ...+|.+
T Consensus 199 yprytddwfnshgtrcagev~aardn--gicg------vgvaydskvagirmldq--pymtdlieansmghep~kihiys 268 (629)
T KOG3526|consen 199 YPRYTDDWFNSHGTRCAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYS 268 (629)
T ss_pred CCcccchhhhccCccccceeeeeccC--Ccee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEe
Confidence 211222 468999999988776543 3444 49999999999999864 455566554322211 2378999
Q ss_pred eecCCCCCCCC----CcHHHHHHHHHHh-----CCcEEEEecCCCCCCCC-CcC--CCCCceEEEcccccCccccEEEEe
Q 004809 255 MSLGLDGVDLY----EDPVAIATFAAIE-----KNIFVSTSAGNQGPFIG-TLH--NGIPWVMTVAAGTMDRELGATLTL 322 (729)
Q Consensus 255 ~SlG~~~~~~~----~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~-t~~--~~~p~vitVgAst~d~~~~~~~~l 322 (729)
.|||.....-. .+...+++.+-++ .|-+.|.|.|..|.... ... +.+-|.|++-+.--
T Consensus 269 aswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsain---------- 338 (629)
T KOG3526|consen 269 ASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAIN---------- 338 (629)
T ss_pred cccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhc----------
Confidence 99997432211 1222223223332 35689999998775421 111 23345555533110
Q ss_pred CCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeec
Q 004809 323 GNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFL 402 (729)
Q Consensus 323 ~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 402 (729)
+|+ ...|.+.|..
T Consensus 339 -dg~-----------------nahydescss------------------------------------------------- 351 (629)
T KOG3526|consen 339 -DGE-----------------NAHYDESCSS------------------------------------------------- 351 (629)
T ss_pred -CCc-----------------cccccchhhH-------------------------------------------------
Confidence 111 0011112210
Q ss_pred cccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCC
Q 004809 403 QSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSN 482 (729)
Q Consensus 403 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~ 482 (729)
-..+.||+-|-++.. |+..
T Consensus 352 -------------------------------------------tlastfsng~rnpet-----------gvat------- 370 (629)
T KOG3526|consen 352 -------------------------------------------TLASTFSNGGRNPET-----------GVAT------- 370 (629)
T ss_pred -------------------------------------------HHHHHhhcCCcCCCc-----------ceee-------
Confidence 023457776554421 1111
Q ss_pred CCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCC----cccCCCCCCCCC
Q 004809 483 LAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSD----IKDIGDDNKPAT 558 (729)
Q Consensus 483 ~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~----~~~~~~~~~~~~ 558 (729)
.+..+.....-||||.|+|-.||+.||.++++|.+++.+++.+-.-|.+...-.... +.-.+ .....
T Consensus 371 -------tdlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mng--vglef 441 (629)
T KOG3526|consen 371 -------TDLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNG--VGLEF 441 (629)
T ss_pred -------eccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccc--cceee
Confidence 011224566789999999999999999999999999999999887777654321110 00000 11223
Q ss_pred CCCCCccccCccCcCCCCccccCChhhHHHHhhhcCC
Q 004809 559 PIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNL 595 (729)
Q Consensus 559 ~~~~G~G~vn~~~Al~~glv~d~~~~dy~~~lc~~~~ 595 (729)
+..||+|.+|+.+.+....-+.+.+.- |-|.-|.
T Consensus 442 nhlfgfgvldagamv~lak~wktvppr---yhc~ag~ 475 (629)
T KOG3526|consen 442 NHLFGFGVLDAGAMVMLAKAWKTVPPR---YHCTAGL 475 (629)
T ss_pred ecccccccccHHHHHHHHHHhccCCCc---eeecccc
Confidence 457999999998877655555555542 4466554
|
|
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=123.55 Aligned_cols=115 Identities=23% Similarity=0.301 Sum_probs=96.5
Q ss_pred CCceeeEEEcCCccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceee-c-c-ccccEEEechh
Q 004809 339 SLIDFPIVFMDECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFF-L-Q-SSFPAVFMNSK 414 (729)
Q Consensus 339 ~~~~~~lv~~~~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-~-~-~~~p~~~i~~~ 414 (729)
.....+++|.+.|...++. .+++|||+||+|+.|.+.+|..+++++||.|+|++++..+.... . . ..+|++.|+..
T Consensus 24 ~~~~~~lv~~g~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~ 103 (143)
T cd02133 24 LGKTYELVDAGLGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKE 103 (143)
T ss_pred CCcEEEEEEccCCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHH
Confidence 3467899999988877776 78999999999999999999999999999999999985432211 1 1 47899999999
Q ss_pred hHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCC
Q 004809 415 TGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSI 458 (729)
Q Consensus 415 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~ 458 (729)
+|+.|.+|+++ +++|.+..+.. ..+++.++.||||||.-
T Consensus 104 dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 104 DGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred HHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 99999999987 67777777766 56788999999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=114.89 Aligned_cols=111 Identities=34% Similarity=0.544 Sum_probs=91.8
Q ss_pred EEeCCCcEEEeeeecCCCCCCceeeEEEc---------CCccccccc-ccCCceEEEEccCCC-chhhHHHHHHhCCceE
Q 004809 320 LTLGNGNTVTGLSLYPGNSSLIDFPIVFM---------DECLNLAEL-KKVGQKIVVCQDKND-SLSNQVDNIQNASVSG 388 (729)
Q Consensus 320 ~~l~~g~~~~g~~~~~~~~~~~~~~lv~~---------~~c~~~~~~-~~~~gkiv~~~~g~~-~~~~~~~~~~~~Ga~g 388 (729)
++|+||+++.|++++++.. ..+++++. +.|.+..+. .+++||||||+|+.+ .+.+|..+++++||.|
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~g 79 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAG 79 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcE
Confidence 6799999999999997664 34555542 359888887 889999999999999 9999999999999999
Q ss_pred EEEEecCCCc-eeecc-ccccEEEechhhHHHHHHHHhhcCCcEEE
Q 004809 389 GVFISDFDGL-EFFLQ-SSFPAVFMNSKTGDILKDYIKIENNATAT 432 (729)
Q Consensus 389 ~i~~~~~~~~-~~~~~-~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 432 (729)
+|++++..+. ..... ..+|++.|+..+|+.|++|++++.+++++
T Consensus 80 vI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 80 MILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999984332 22223 68999999999999999999988776654
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-08 Score=90.29 Aligned_cols=82 Identities=24% Similarity=0.310 Sum_probs=64.4
Q ss_pred eeeEE------EcCCccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec----CCCce-eecc-ccccE
Q 004809 342 DFPIV------FMDECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD----FDGLE-FFLQ-SSFPA 408 (729)
Q Consensus 342 ~~~lv------~~~~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~----~~~~~-~~~~-~~~p~ 408 (729)
..+|| ....|...... .+++||||||+||.|.+.+|..+++++||.|+|++|. ..... .... ..+|+
T Consensus 7 ~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~ 86 (101)
T PF02225_consen 7 TGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPV 86 (101)
T ss_dssp EEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEE
T ss_pred EEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEE
Confidence 45666 33457677777 9999999999999999999999999999999999992 11111 2223 89999
Q ss_pred EEechhhHHHHHHHH
Q 004809 409 VFMNSKTGDILKDYI 423 (729)
Q Consensus 409 ~~i~~~~g~~l~~~~ 423 (729)
+.|+..+|+.|++|+
T Consensus 87 v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 87 VFISYEDGEALLAYI 101 (101)
T ss_dssp EEE-HHHHHHHHHHH
T ss_pred EEeCHHHHhhhhccC
Confidence 999999999999986
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=87.08 Aligned_cols=82 Identities=11% Similarity=0.088 Sum_probs=67.5
Q ss_pred CCccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCcee-----ec-c-ccccEEEechhhHHHHH
Q 004809 349 DECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEF-----FL-Q-SSFPAVFMNSKTGDILK 420 (729)
Q Consensus 349 ~~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-----~~-~-~~~p~~~i~~~~g~~l~ 420 (729)
..|.+..+. .+++|||+||+|+.|.+.+|..+++++||.|+|++|+..+... .. . ..+|++.|+..+|+.|+
T Consensus 30 ~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l~ 109 (122)
T cd04816 30 AGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAALR 109 (122)
T ss_pred cCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHHH
Confidence 358887776 7899999999999999999999999999999999998442111 11 2 56999999999999999
Q ss_pred HHHhhcCCcE
Q 004809 421 DYIKIENNAT 430 (729)
Q Consensus 421 ~~~~~~~~~~ 430 (729)
+++.++.+.+
T Consensus 110 ~~l~~g~~v~ 119 (122)
T cd04816 110 RRLGAGETLE 119 (122)
T ss_pred HHHcCCCEEE
Confidence 9997765443
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=85.65 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=70.1
Q ss_pred CCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCC--ceee-------cc-ccccEEEechhhHHH
Q 004809 349 DECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDG--LEFF-------LQ-SSFPAVFMNSKTGDI 418 (729)
Q Consensus 349 ~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~--~~~~-------~~-~~~p~~~i~~~~g~~ 418 (729)
..|.+.....+++|||+|++||.|.|.+|..+++++||.++|++|+..+ .... .. ..+|++.|+..+|+.
T Consensus 22 ~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~ 101 (118)
T cd02127 22 EACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYM 101 (118)
T ss_pred ccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHH
Confidence 3588644336899999999999999999999999999999999998332 1111 12 579999999999999
Q ss_pred HHHHHhhcCCcEEEEE
Q 004809 419 LKDYIKIENNATATIQ 434 (729)
Q Consensus 419 l~~~~~~~~~~~~~i~ 434 (729)
|++.+..+..+++.|.
T Consensus 102 L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 102 IRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHcCCceEEeee
Confidence 9999998888776654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-07 Score=85.95 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=67.3
Q ss_pred CcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCc-eee----cc-ccccEEEechhhHHHHHHHH
Q 004809 350 ECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGL-EFF----LQ-SSFPAVFMNSKTGDILKDYI 423 (729)
Q Consensus 350 ~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-~~~----~~-~~~p~~~i~~~~g~~l~~~~ 423 (729)
.|.+..+..+++|||+||+|+.|.+..|..+++++||.|+|++++.... ... .. ..+|++.|+..+|+.|++|+
T Consensus 29 ~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l 108 (118)
T cd04818 29 GCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAAL 108 (118)
T ss_pred ccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHHHH
Confidence 5988877666999999999999999999999999999999999984432 221 12 57999999999999999999
Q ss_pred hhcCCcE
Q 004809 424 KIENNAT 430 (729)
Q Consensus 424 ~~~~~~~ 430 (729)
+.+...+
T Consensus 109 ~~g~~v~ 115 (118)
T cd04818 109 AAGGTVT 115 (118)
T ss_pred hcCCcEE
Confidence 8765443
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-07 Score=83.04 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=71.7
Q ss_pred eeeEEEcC--CcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecC-CCcee----ecc-ccccEEEech
Q 004809 342 DFPIVFMD--ECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDF-DGLEF----FLQ-SSFPAVFMNS 413 (729)
Q Consensus 342 ~~~lv~~~--~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~-~~~~~----~~~-~~~p~~~i~~ 413 (729)
.-++++.. .|.+..+..+++|||+|++|+.|.+.+|..+++++||.|+|++|+. .+... ..+ ..+|++.|+.
T Consensus 23 ~g~lv~~~~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~ 102 (122)
T cd02130 23 TGPLVVVPNLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQ 102 (122)
T ss_pred EEEEEEeCCCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecH
Confidence 45566654 6886555467999999999999999999999999999999999984 43211 112 5799999999
Q ss_pred hhHHHHHHHHhhcCCcEE
Q 004809 414 KTGDILKDYIKIENNATA 431 (729)
Q Consensus 414 ~~g~~l~~~~~~~~~~~~ 431 (729)
.+|+.|++.+.++.+.+.
T Consensus 103 ~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 103 EDGKALVAALANGGEVSA 120 (122)
T ss_pred HHHHHHHHHHhcCCcEEE
Confidence 999999999987765543
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.2e-08 Score=83.40 Aligned_cols=67 Identities=34% Similarity=0.595 Sum_probs=49.3
Q ss_pred cccHHHHHHHHhcccccccccccccccccCCCceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEcCCccCCC
Q 004809 10 FRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPH 84 (729)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~ 84 (729)
...|.+|+.+++.+..... .....+++|+|+..||||+++++++++++|+++|+|++|+||+.+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 16 FSSHKSWQASILKSALKSA--------SSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHHHHHHHH----HHHHTH---------TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred HHHHHHHHHHHHhhhhhhh--------cccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 5678889998876532100 011689999999999999999999999999999999999999988764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-07 Score=83.96 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=65.3
Q ss_pred ccccc--cc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCC--cee-e----cc-ccccEEEechhhHHHH
Q 004809 351 CLNLA--EL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDG--LEF-F----LQ-SSFPAVFMNSKTGDIL 419 (729)
Q Consensus 351 c~~~~--~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~--~~~-~----~~-~~~p~~~i~~~~g~~l 419 (729)
|.... +. .+++||||||+|+.|.+.+|..+++++||.|+|++++... ... . .. ..+|++.|+..+|+.|
T Consensus 33 C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~~l 112 (126)
T cd00538 33 CGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEAL 112 (126)
T ss_pred EecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHHHH
Confidence 87776 55 7899999999999999999999999999999999998432 111 1 13 6799999999999999
Q ss_pred HHHHhhcCCc
Q 004809 420 KDYIKIENNA 429 (729)
Q Consensus 420 ~~~~~~~~~~ 429 (729)
++|+.+..+.
T Consensus 113 ~~~~~~~~~v 122 (126)
T cd00538 113 LSLLEAGKTV 122 (126)
T ss_pred HHHHhcCCce
Confidence 9999875543
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.51 E-value=5e-07 Score=81.92 Aligned_cols=85 Identities=13% Similarity=0.057 Sum_probs=69.4
Q ss_pred ceeeEEEcC---Cccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCce---ee--cc-ccccEEE
Q 004809 341 IDFPIVFMD---ECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLE---FF--LQ-SSFPAVF 410 (729)
Q Consensus 341 ~~~~lv~~~---~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~--~~-~~~p~~~ 410 (729)
..+|++... .|....+. .+++|||+|++||.|+|.+|..+++++||.++|++|+..... .. .. ..||++.
T Consensus 20 ~~~~~~~~~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~ 99 (120)
T cd02129 20 TLLPLRNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVAL 99 (120)
T ss_pred cceeeecCCCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEE
Confidence 456776654 49888877 789999999999999999999999999999999999943211 11 12 6789999
Q ss_pred echhhHHHHHHHHhh
Q 004809 411 MNSKTGDILKDYIKI 425 (729)
Q Consensus 411 i~~~~g~~l~~~~~~ 425 (729)
|+..+|+.|.+.+..
T Consensus 100 Is~~dG~~i~~~l~~ 114 (120)
T cd02129 100 LSYKDMLDIQQTFGD 114 (120)
T ss_pred EeHHHHHHHHHHhcc
Confidence 999999999888753
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-07 Score=84.52 Aligned_cols=84 Identities=12% Similarity=0.121 Sum_probs=69.2
Q ss_pred CCcccccc--c-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCC-Cc-eeec--c--ccccEEEechhhHHHH
Q 004809 349 DECLNLAE--L-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFD-GL-EFFL--Q--SSFPAVFMNSKTGDIL 419 (729)
Q Consensus 349 ~~c~~~~~--~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~-~~-~~~~--~--~~~p~~~i~~~~g~~l 419 (729)
..|.+... + .++.|+|+|++||.|.|.+|..+++++||.++|++|+.. +. .+.+ + ..+|+++|+..+|+.|
T Consensus 45 ~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l 124 (138)
T cd02122 45 YGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEI 124 (138)
T ss_pred CCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHH
Confidence 45987776 4 779999999999999999999999999999999999954 32 2221 2 4689999999999999
Q ss_pred HHHHhhcCCcEEE
Q 004809 420 KDYIKIENNATAT 432 (729)
Q Consensus 420 ~~~~~~~~~~~~~ 432 (729)
++++.++.+.+.+
T Consensus 125 ~~~l~~G~~Vtv~ 137 (138)
T cd02122 125 LELLERGISVTMV 137 (138)
T ss_pred HHHHHcCCcEEEe
Confidence 9999877665543
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.6e-07 Score=83.17 Aligned_cols=82 Identities=26% Similarity=0.443 Sum_probs=66.0
Q ss_pred CCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCc-----eee--------cc-ccccEEEechh
Q 004809 349 DECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGL-----EFF--------LQ-SSFPAVFMNSK 414 (729)
Q Consensus 349 ~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-----~~~--------~~-~~~p~~~i~~~ 414 (729)
..|.+.....+++|||+|++||.|.|.+|..+++++||.++|++|+..+. ... .+ ..||++.|+..
T Consensus 28 ~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~ 107 (126)
T cd02126 28 RACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSK 107 (126)
T ss_pred hcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHH
Confidence 35876554467899999999999999999999999999999999873321 111 12 57899999999
Q ss_pred hHHHHHHHHhhcCCcE
Q 004809 415 TGDILKDYIKIENNAT 430 (729)
Q Consensus 415 ~g~~l~~~~~~~~~~~ 430 (729)
+|+.|++++......+
T Consensus 108 dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 108 EGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHhCCceE
Confidence 9999999998765443
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-06 Score=82.18 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=63.8
Q ss_pred eeEEEcCCccccccc-ccCCceEEEEccCCCc-----hhhHHHHHHhCCceEEEEEecC--CCce--eecc----ccccE
Q 004809 343 FPIVFMDECLNLAEL-KKVGQKIVVCQDKNDS-----LSNQVDNIQNASVSGGVFISDF--DGLE--FFLQ----SSFPA 408 (729)
Q Consensus 343 ~~lv~~~~c~~~~~~-~~~~gkiv~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~~~~--~~~~--~~~~----~~~p~ 408 (729)
-++++.+.+. .++. .+++|||+|++||.|. |.+|..+++++||.|+|+||+. .+.. ...+ ..+|+
T Consensus 38 g~lv~~g~~g-~d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~ 116 (139)
T cd04817 38 GSLYYCGTSG-GSYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPS 116 (139)
T ss_pred EEEEEccCCC-ccccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeE
Confidence 3566543211 1333 6899999999999999 9999999999999999999995 5421 1122 57999
Q ss_pred EEechhhHHHHHHHHhh
Q 004809 409 VFMNSKTGDILKDYIKI 425 (729)
Q Consensus 409 ~~i~~~~g~~l~~~~~~ 425 (729)
+.|+..+|+.|++.+..
T Consensus 117 v~is~~dG~~L~~~l~~ 133 (139)
T cd04817 117 VSVDRADGQALLAALGQ 133 (139)
T ss_pred EEeeHHHHHHHHHHhcC
Confidence 99999999999988743
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-06 Score=79.49 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=65.0
Q ss_pred Cccccccc---c----cCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCcee------------ecc-ccccEE
Q 004809 350 ECLNLAEL---K----KVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEF------------FLQ-SSFPAV 409 (729)
Q Consensus 350 ~c~~~~~~---~----~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~------------~~~-~~~p~~ 409 (729)
.|.+.... . ...++|+|++||.|.|.+|..+++++||.++|++|+.++... ..+ ..+|++
T Consensus 24 gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~v 103 (127)
T cd02125 24 GCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPSA 103 (127)
T ss_pred cCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeEE
Confidence 58766543 2 478899999999999999999999999999999998443211 112 469999
Q ss_pred EechhhHHHHHHHHhhcCCcE
Q 004809 410 FMNSKTGDILKDYIKIENNAT 430 (729)
Q Consensus 410 ~i~~~~g~~l~~~~~~~~~~~ 430 (729)
.|+..+|+.|++.+..+...+
T Consensus 104 ~Is~~~G~~L~~~l~~g~~V~ 124 (127)
T cd02125 104 LITKAFGEKLKKAISNGEMVV 124 (127)
T ss_pred EECHHHHHHHHHHHhcCCeEE
Confidence 999999999999998776544
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.1e-07 Score=98.04 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=95.9
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
+..+|..+++|+++.|+|.|+|+...||+.... + ...+..++.... +.+.
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~------------------------~~~~s~d~~~~~-----~~p~ 71 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-Y------------------------DPLGSYDVNRHD-----NDPE 71 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-c------------------------CcceeEeeecCC-----CCcc
Confidence 466999999999999999999999999998753 1 112222222111 1111
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH-cCCcEEEe
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII-DGVDVLSM 255 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~-~gvdVIn~ 255 (729)
+-.+......|||-||+-.+...... . -..|+++++++..++++.. ..++...+...... .-+++-+.
T Consensus 72 ~~~~~~~~~~~g~~Ca~~~a~~~~~~--~------C~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~sc 140 (431)
T KOG3525|consen 72 PRCDGTNENKHGTRCAGCVAARANNL--T------CGVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSC 140 (431)
T ss_pred cccCCCCccccCCCCCcccccccCCC--c------CCCCcccCccccceeeeee---ecccceecccccCCCCCceeecC
Confidence 21223345789999999998875221 1 1369999999999988742 11122222222222 23799999
Q ss_pred ecCCCCCC----CCCcHHHHHHHHH-----HhCCcEEEEecCCCCCCCC
Q 004809 256 SLGLDGVD----LYEDPVAIATFAA-----IEKNIFVSTSAGNQGPFIG 295 (729)
Q Consensus 256 SlG~~~~~----~~~~~~~~a~~~a-----~~~Gi~vV~AAGN~G~~~~ 295 (729)
|||..... -.......+.+.+ ..+|-+.+++.||.|....
T Consensus 141 sw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 141 SWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 99975421 1111222222222 2567889999999875543
|
|
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.6e-06 Score=80.09 Aligned_cols=87 Identities=17% Similarity=0.270 Sum_probs=68.2
Q ss_pred eeeEEEc---CCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCce-ee-----c--cccccEEE
Q 004809 342 DFPIVFM---DECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLE-FF-----L--QSSFPAVF 410 (729)
Q Consensus 342 ~~~lv~~---~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~-~~-----~--~~~~p~~~ 410 (729)
..+++.. ..|.+.. .+++|||+|++||.|.|.+|..+++++||.++|++|+..... .. . +..+|++.
T Consensus 39 ~~~lv~~~~~~gC~~~~--~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~ 116 (139)
T cd02132 39 KTRAVLANPLDCCSPST--SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVM 116 (139)
T ss_pred EEEEEECCcccccCCCC--cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEE
Confidence 4455544 3587654 478999999999999999999999999999999999843211 11 1 15799999
Q ss_pred echhhHHHHHHHHhhcCCcE
Q 004809 411 MNSKTGDILKDYIKIENNAT 430 (729)
Q Consensus 411 i~~~~g~~l~~~~~~~~~~~ 430 (729)
|+..+|+.|++++..+...+
T Consensus 117 Is~~~G~~L~~~l~~g~~Vt 136 (139)
T cd02132 117 IPQSAGDALNKSLDQGKKVE 136 (139)
T ss_pred ecHHHHHHHHHHHHcCCcEE
Confidence 99999999999998765543
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-06 Score=77.40 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=61.9
Q ss_pred CCccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCce---ee----cc-ccccEEEechhhHHHH
Q 004809 349 DECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLE---FF----LQ-SSFPAVFMNSKTGDIL 419 (729)
Q Consensus 349 ~~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~----~~-~~~p~~~i~~~~g~~l 419 (729)
..|.+. + .+++|||+|++||.|+|.+|..+++++||.++|++|+..+.. .. .. ..+|++.|+..+++.|
T Consensus 28 ~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L 105 (117)
T cd04813 28 DACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLL 105 (117)
T ss_pred CCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHH
Confidence 468665 4 889999999999999999999999999999999999844321 11 12 5799999999999999
Q ss_pred HHHHhh
Q 004809 420 KDYIKI 425 (729)
Q Consensus 420 ~~~~~~ 425 (729)
..++..
T Consensus 106 ~~l~~~ 111 (117)
T cd04813 106 SSLLPK 111 (117)
T ss_pred HHhccc
Confidence 888643
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-05 Score=74.95 Aligned_cols=88 Identities=15% Similarity=0.020 Sum_probs=71.5
Q ss_pred CceeeEEEcCCccccccc-ccCCceEEEEccCCC--chhhHHHHHHhCCceEEEEEecCCCcee------e--cc-cccc
Q 004809 340 LIDFPIVFMDECLNLAEL-KKVGQKIVVCQDKND--SLSNQVDNIQNASVSGGVFISDFDGLEF------F--LQ-SSFP 407 (729)
Q Consensus 340 ~~~~~lv~~~~c~~~~~~-~~~~gkiv~~~~g~~--~~~~~~~~~~~~Ga~g~i~~~~~~~~~~------~--~~-~~~p 407 (729)
..+.+++|.+.+....+. .+++|||+|++++.+ .+.+|..+++++||.|+|++|+..+... . .. ..+|
T Consensus 22 ~~~~~lV~~g~G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP 101 (127)
T cd04819 22 EAKGEPVDAGYGLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIP 101 (127)
T ss_pred CeeEEEEEeCCCCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCC
Confidence 357889998877655555 679999999999998 8899999999999999999988444211 1 12 5799
Q ss_pred EEEechhhHHHHHHHHhhcC
Q 004809 408 AVFMNSKTGDILKDYIKIEN 427 (729)
Q Consensus 408 ~~~i~~~~g~~l~~~~~~~~ 427 (729)
++.|+..+|+.|.+.++.+.
T Consensus 102 ~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 102 AASVSGEDGLRLARVAERND 121 (127)
T ss_pred EEEEeHHHHHHHHHHHhcCC
Confidence 99999999999999987643
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.2e-06 Score=73.87 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=58.0
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEEe--------CCC----------c-EEEEecCeEEEccCCeEEEEEEEEEecCCC--
Q 004809 634 SVQEFQRTVTNVGEGVSTYTASVTP--------LKG----------F-NFSVDPDKLTFKGKYAKQSYKLRIEGPNQM-- 692 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~~tY~~~v~~--------p~g----------~-~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~-- 692 (729)
...+++.+|+|.|+...+|+++... ..| . .+...|..++++ +|++++++|+|+.+...
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~-ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVP-AGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEEC-CCCEEEEEEEEEehhcCCc
Confidence 3588999999999999999987651 111 1 567778888887 99999999999986422
Q ss_pred CCCCeeEEEEEEEEEcCCceEEEEEEE
Q 004809 693 DEETVVAFCYLSWIETGGKHVVKSPIV 719 (729)
Q Consensus 693 ~~~~~~~~G~l~~~~~~~~~~v~~P~~ 719 (729)
.++. +++|+|.+++.++.+.+++||+
T Consensus 87 ~~~~-~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGP-FYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-E-EEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCC-EEEEEEEEEcCCCCEEEEeeeC
Confidence 2144 9999999995445569999986
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-06 Score=78.44 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=63.0
Q ss_pred Cccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCc-ee-ecc-ccccEEEechhhHHHHHHHHhh
Q 004809 350 ECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGL-EF-FLQ-SSFPAVFMNSKTGDILKDYIKI 425 (729)
Q Consensus 350 ~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-~~-~~~-~~~p~~~i~~~~g~~l~~~~~~ 425 (729)
.|.+...+ .+++|||+|++||.|.+.+|..+++++||.++|++|+..+. .. ..+ ..+|.+.+ ..+|+.|++.+..
T Consensus 43 gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l~~ 121 (129)
T cd02124 43 ACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDALAA 121 (129)
T ss_pred cCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHHhc
Confidence 59876656 68999999999999999999999999999999999984332 11 112 44666666 9999999999976
Q ss_pred cCCcE
Q 004809 426 ENNAT 430 (729)
Q Consensus 426 ~~~~~ 430 (729)
+...+
T Consensus 122 G~~vt 126 (129)
T cd02124 122 GSNVT 126 (129)
T ss_pred CCeEE
Confidence 65433
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=95.60 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=58.0
Q ss_pred ceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcC-CcEEEeecCCCC--CC-C--CCcHHHHHHHHHHhCCcEEEE
Q 004809 212 TALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDG-VDVLSMSLGLDG--VD-L--YEDPVAIATFAAIEKNIFVST 285 (729)
Q Consensus 212 ~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~g-vdVIn~SlG~~~--~~-~--~~~~~~~a~~~a~~~Gi~vV~ 285 (729)
...-+||+|+|..|-+ +. .....+..|+.+....= --+|-+||+... .+ . +-+.+..-...|..+||.+++
T Consensus 287 ~s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 287 WSHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 3568999999999877 22 22222223333222211 133445666532 11 1 334455555678899999999
Q ss_pred ecCCCCCCCC--------CcCCCCCceEEEcc
Q 004809 286 SAGNQGPFIG--------TLHNGIPWVMTVAA 309 (729)
Q Consensus 286 AAGN~G~~~~--------t~~~~~p~vitVgA 309 (729)
|+|.+|.... ..++.+|++++||-
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999986553 24468899999997
|
|
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.7e-06 Score=77.85 Aligned_cols=79 Identities=27% Similarity=0.364 Sum_probs=64.5
Q ss_pred Ccccccc---c-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCcee--ec------cccccEEEechhhHH
Q 004809 350 ECLNLAE---L-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEF--FL------QSSFPAVFMNSKTGD 417 (729)
Q Consensus 350 ~c~~~~~---~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~--~~------~~~~p~~~i~~~~g~ 417 (729)
.|.+... . ..+.|||+|++||.|+|.+|..+++++||.++|++|+..+... .. +..+|++.|+..+|+
T Consensus 52 gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg~ 131 (153)
T cd02123 52 ACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKSTGE 131 (153)
T ss_pred cCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHHHH
Confidence 5876554 3 6789999999999999999999999999999999998433211 11 147999999999999
Q ss_pred HHHHHHhhcCC
Q 004809 418 ILKDYIKIENN 428 (729)
Q Consensus 418 ~l~~~~~~~~~ 428 (729)
.|+.++...+.
T Consensus 132 ~L~~~l~~~~~ 142 (153)
T cd02123 132 ILKKYASYEKG 142 (153)
T ss_pred HHHHHHhcCCc
Confidence 99999876544
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00073 Score=65.90 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=66.4
Q ss_pred eeeEEEcCCccccccc------ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecC--CCc---------------
Q 004809 342 DFPIVFMDECLNLAEL------KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDF--DGL--------------- 398 (729)
Q Consensus 342 ~~~lv~~~~c~~~~~~------~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~--~~~--------------- 398 (729)
+-++||...|...++. .+++|||+|++++.|.+.+|..+++++||+|+|+|++. ...
T Consensus 30 ~g~lVyvn~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~ 109 (183)
T cd02128 30 TGKLVYANYGRKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGT 109 (183)
T ss_pred EEEEEEcCCCCHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccC
Confidence 6788998777554442 47999999999999999999999999999999999882 111
Q ss_pred --eee------------c----c-ccccEEEechhhHHHHHHHHhhc
Q 004809 399 --EFF------------L----Q-SSFPAVFMNSKTGDILKDYIKIE 426 (729)
Q Consensus 399 --~~~------------~----~-~~~p~~~i~~~~g~~l~~~~~~~ 426 (729)
.+. . . ..||++.|+..+++.|++.+.-.
T Consensus 110 GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 110 GDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred CCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 000 0 1 35889999999999999988543
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0008 Score=62.90 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=58.4
Q ss_pred ccCCceEEEEccCCC------chhhH-------HHHHHhCCceEEEEEecCC--------Cceee-cc-ccccEEEechh
Q 004809 358 KKVGQKIVVCQDKND------SLSNQ-------VDNIQNASVSGGVFISDFD--------GLEFF-LQ-SSFPAVFMNSK 414 (729)
Q Consensus 358 ~~~~gkiv~~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~~~~~--------~~~~~-~~-~~~p~~~i~~~ 414 (729)
.+++||||++.++.| .+..| ...++++||.|+|++|... |.... .. ..+|++.|+..
T Consensus 36 ~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~e 115 (134)
T cd04815 36 GAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVE 115 (134)
T ss_pred hhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEechh
Confidence 579999999999999 88888 6999999999999998621 11111 11 56999999999
Q ss_pred hHHHHHHHHhhcCCcE
Q 004809 415 TGDILKDYIKIENNAT 430 (729)
Q Consensus 415 ~g~~l~~~~~~~~~~~ 430 (729)
++..|...++.+...+
T Consensus 116 d~~~L~r~l~~g~~v~ 131 (134)
T cd04815 116 DADMLERLAARGKPIR 131 (134)
T ss_pred cHHHHHHHHhCCCCeE
Confidence 9999999988765443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0059 Score=57.30 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=45.7
Q ss_pred CceeeEEEcCC------ccccccc-ccCCceEEEEccCCC------------------chhhHHHHHHhCCceEEEEEec
Q 004809 340 LIDFPIVFMDE------CLNLAEL-KKVGQKIVVCQDKND------------------SLSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 340 ~~~~~lv~~~~------c~~~~~~-~~~~gkiv~~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
....++||.+. |...++. .+++|||||+.++.| .+..|..+++++||.|+|++++
T Consensus 19 ~~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 19 IKDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE 98 (142)
T ss_pred ccceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence 34577887753 5555665 799999999999877 4668999999999999999998
Q ss_pred CC
Q 004809 395 FD 396 (729)
Q Consensus 395 ~~ 396 (729)
..
T Consensus 99 ~~ 100 (142)
T cd04814 99 LA 100 (142)
T ss_pred CC
Confidence 43
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.01 Score=60.01 Aligned_cols=54 Identities=22% Similarity=0.124 Sum_probs=47.9
Q ss_pred ceeeEEEcCCccccccc------ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec
Q 004809 341 IDFPIVFMDECLNLAEL------KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 341 ~~~~lv~~~~c~~~~~~------~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
.+.++||...|....+. .+++|||||++++.+.+..|..+++++||+|+|++++
T Consensus 45 v~g~lVyvnyG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~D 104 (220)
T cd02121 45 VTAELVYANYGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSD 104 (220)
T ss_pred ceEEEEEcCCCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeC
Confidence 46789999988776543 5799999999999999899999999999999999998
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.024 Score=52.93 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=43.8
Q ss_pred ceeeEEEcCC------ccccccc-ccCCceEEEEccCCCc------------hhhHHHHHHhCCceEEEEEec
Q 004809 341 IDFPIVFMDE------CLNLAEL-KKVGQKIVVCQDKNDS------------LSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 341 ~~~~lv~~~~------c~~~~~~-~~~~gkiv~~~~g~~~------------~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
.+-++||.+. |...++. .+++|||||+.++.+. +..|..++.++||.|+|++++
T Consensus 22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 4567777764 4445554 7899999999998763 668999999999999999998
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.015 Score=63.39 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=59.6
Q ss_pred ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCC-------c-eeeccccccEEEechhhHHHHHHHHhhcCCc
Q 004809 358 KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDG-------L-EFFLQSSFPAVFMNSKTGDILKDYIKIENNA 429 (729)
Q Consensus 358 ~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~-------~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 429 (729)
.++.||+++..||.|.|.+|...++++||.++++.|+... . +...+..||++.+.+++++.+.....++.+.
T Consensus 92 ~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V 171 (541)
T KOG2442|consen 92 SKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNV 171 (541)
T ss_pred ccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeE
Confidence 6789999999999999999999999999999999998221 1 1122378999999999999998765555444
Q ss_pred E
Q 004809 430 T 430 (729)
Q Consensus 430 ~ 430 (729)
+
T Consensus 172 ~ 172 (541)
T KOG2442|consen 172 E 172 (541)
T ss_pred E
Confidence 3
|
|
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.18 Score=44.42 Aligned_cols=81 Identities=11% Similarity=-0.036 Sum_probs=59.3
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCCCCCCeeEEEEEEEEEcCCceE
Q 004809 634 SVQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHV 713 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~~tY~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~l~~~~~~~~~~ 713 (729)
...+.+.+|+|.|.....|++.......-.++++|..-.+. +|++.+++|+|..... . +.+.+.|... -....
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~-PG~~~~~~V~~~~~~~-~---g~~~~~l~i~--~e~~~ 92 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLA-PGESVELEVTFSPTKP-L---GDYEGSLVIT--TEGGS 92 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEEC-CCCEEEEEEEEEeCCC-C---ceEEEEEEEE--ECCeE
Confidence 35667788999999999999876442345677777765565 8999999999995432 2 2578989887 44457
Q ss_pred EEEEEEEE
Q 004809 714 VKSPIVVT 721 (729)
Q Consensus 714 v~~P~~~~ 721 (729)
+.+|+-+.
T Consensus 93 ~~i~v~a~ 100 (102)
T PF14874_consen 93 FEIPVKAE 100 (102)
T ss_pred EEEEEEEE
Confidence 78887654
|
|
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.031 Score=53.07 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=42.3
Q ss_pred eeeEEEcCC------ccccccc-ccCCceEEEEccCC------------------CchhhHHHHHHhCCceEEEEEec
Q 004809 342 DFPIVFMDE------CLNLAEL-KKVGQKIVVCQDKN------------------DSLSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 342 ~~~lv~~~~------c~~~~~~-~~~~gkiv~~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
+-++||.+. |....+. .+++|||||+.++. |.+..|..++++.||.|+|++++
T Consensus 21 tg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d 98 (151)
T cd04822 21 TAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNG 98 (151)
T ss_pred eEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeC
Confidence 457777764 4434444 78999999998763 56778999999999999999998
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.012 Score=55.14 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=43.7
Q ss_pred eeeEEEcCCccccccc-----ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec
Q 004809 342 DFPIVFMDECLNLAEL-----KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 342 ~~~lv~~~~c~~~~~~-----~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
+-++||..-+...++. -+++|||+|++.|...+..|..++++.||.|+|||.+
T Consensus 16 tg~~VYvNyG~~eDf~~L~~~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsD 73 (153)
T cd02131 16 QAEVVDVQYGSVEDLRRIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVD 73 (153)
T ss_pred EEEEEEecCCCHHHHHHHHhCCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecC
Confidence 4567776544433322 5699999999999999999999999999999999998
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.02 Score=53.21 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=71.9
Q ss_pred eeeEEEcC---CcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec-CCCcee------ec----c-ccc
Q 004809 342 DFPIVFMD---ECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD-FDGLEF------FL----Q-SSF 406 (729)
Q Consensus 342 ~~~lv~~~---~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~-~~~~~~------~~----~-~~~ 406 (729)
.+++|..+ .|.+....-...|.|.|.+||+|+|..|..+++++||..+|+..+ ...++. +. + ..+
T Consensus 65 ~~~lV~adPp~aC~elrN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~Ani 144 (193)
T KOG3920|consen 65 NLELVLADPPHACEELRNEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANI 144 (193)
T ss_pred CcceeecCChhHHHHHhhcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCC
Confidence 45666654 588776667789999999999999999999999999999999887 332222 11 2 789
Q ss_pred cEEEechhhHHHHHHHHhhcCCcEEEEEec
Q 004809 407 PAVFMNSKTGDILKDYIKIENNATATIQFQ 436 (729)
Q Consensus 407 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 436 (729)
|++.+-..+|..+..-++.-..+-+.|...
T Consensus 145 Pa~fllg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 145 PAVFLLGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred ceEEEeccceEEEehhHHHhCCccEEEecc
Confidence 999999888887776666655555555443
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.064 Score=44.93 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=38.3
Q ss_pred eeEEEEEEEEecCCCC-eEEEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCCC
Q 004809 634 SVQEFQRTVTNVGEGV-STYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMD 693 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~-~tY~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~ 693 (729)
...+++.+|+|.|... ...++++..|+|-.+...|..+..-++|++++++++|+++....
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAA 65 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCC
Confidence 4788999999999765 45888899999999888888776556999999999999876444
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.18 Score=53.93 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=55.4
Q ss_pred ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec-CCCceeec----c-ccccEEEechhhHHHHHHHHh
Q 004809 358 KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD-FDGLEFFL----Q-SSFPAVFMNSKTGDILKDYIK 424 (729)
Q Consensus 358 ~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~-~~~~~~~~----~-~~~p~~~i~~~~g~~l~~~~~ 424 (729)
......++|+.||+|+|.+|..+++++|..++|++|+ ........ + ..++++.++...|+.+.+|..
T Consensus 76 ~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~ 148 (348)
T KOG4628|consen 76 TRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAG 148 (348)
T ss_pred CCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhc
Confidence 5567789999999999999999999999999999998 33322221 2 678999999999999998854
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=92.38 E-value=3.1 Score=37.69 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=40.4
Q ss_pred eEEEEEEEEecCCCCeEEEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCC
Q 004809 635 VQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQM 692 (729)
Q Consensus 635 ~~~~~rtvtnvg~~~~tY~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~ 692 (729)
.-..+.+|+|..+.+.+|++++..++|+++......+++. +|++.++.|.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~-~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVP-PGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEEC-CCCEEEEEEEEEECHHH
Confidence 4457788999999999999999998899996655788886 89999999999987643
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.49 Score=45.36 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=39.7
Q ss_pred ceeeEEEcCCcccc------ccc-ccCCceEEEEccCCCc-------------------hhhHHHHHHhCCceEEEEEec
Q 004809 341 IDFPIVFMDECLNL------AEL-KKVGQKIVVCQDKNDS-------------------LSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 341 ~~~~lv~~~~c~~~------~~~-~~~~gkiv~~~~g~~~-------------------~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
...++||.+-+... ++. .+++||||++.++... ...|...+++.||.|+|++..
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 45677777654332 233 7899999999876442 224899999999999999977
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.37 E-value=5.9 Score=43.91 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=58.1
Q ss_pred eeEEEEEEEEecCCCCeE-EEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCCCCCCeeEEEEEEEE
Q 004809 634 SVQEFQRTVTNVGEGVST-YTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWI 706 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~~t-Y~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~l~~~ 706 (729)
...++...+.|.|+.+.| -++++..|.|-++.|.|.++-.-++|+.+++++|++++....++. ++=.|+-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGd--Y~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGD--YRITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCc--EEEEEEEe
Confidence 467888889999998766 789999999999999999876667999999999999987666343 55555555
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=84.70 E-value=19 Score=32.92 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=49.4
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEEeC----CC--------------cEEE-----EecCeEEEccCCeEEEEEEEEEecC
Q 004809 634 SVQEFQRTVTNVGEGVSTYTASVTPL----KG--------------FNFS-----VDPDKLTFKGKYAKQSYKLRIEGPN 690 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~~tY~~~v~~p----~g--------------~~v~-----v~p~~l~~~~~~~~~~~~vt~~~~~ 690 (729)
.+.+++.+|+|.++...+|.+.+... .| +... -.|..++++ ++|++.++++++.+.
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~-~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLP-PNESKTVTFTIKMPK 105 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEEC-CCCEEEEEEEEEcCC
Confidence 57889999999999999999887421 11 0000 114446675 899999999999887
Q ss_pred CCCCCCeeEEEEEEEE
Q 004809 691 QMDEETVVAFCYLSWI 706 (729)
Q Consensus 691 ~~~~~~~~~~G~l~~~ 706 (729)
..- .. .+-|.|.+.
T Consensus 106 ~~f-~G-~ilGGi~~~ 119 (121)
T PF06030_consen 106 KAF-DG-IILGGIYFS 119 (121)
T ss_pred CCc-CC-EEEeeEEEE
Confidence 544 22 677888776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 729 | ||||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-162 | ||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 8e-96 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 2e-11 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 2e-07 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 3e-07 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 3e-07 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 3e-07 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 3e-07 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 4e-07 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 4e-07 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 5e-07 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 8e-07 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 8e-07 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 8e-07 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 1e-06 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 1e-06 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 2e-06 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-06 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 2e-06 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 2e-06 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 2e-06 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 2e-06 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 3e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 6e-06 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 6e-06 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 1e-05 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 3e-05 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 6e-05 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 7e-05 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 1e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 2e-04 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 2e-04 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 3e-04 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 3e-04 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 3e-04 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 3e-04 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 3e-04 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 3e-04 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 4e-04 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 4e-04 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 5e-04 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 5e-04 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 8e-04 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 9e-04 |
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 682 bits (1761), Expect = 0.0
Identities = 326/649 (50%), Positives = 441/649 (67%), Gaps = 14/649 (2%)
Query: 85 TTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECES 144
TTH+S FL LNP SG WP S G+D+I+ V+D+G+WPES S+ D GM EIP RWKG C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 145 GTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERAS 204
GTQFN+S+CN+KLIGA +FNKG+LA +PT+ I MNS RD +GHGTH +S AG++ + S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 205 YFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDL 264
+FGYA GTA G AP AR+A+YK +NEG+FTSD+IAA+DQA+ DGVD++S+S G + L
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIPL 180
Query: 265 YEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGN 324
YED ++IA+F A+ K + VS SAGN+GP IG+L+NG PW++ VA+G DR TLTLGN
Sbjct: 181 YEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN 240
Query: 325 GNTVTGLSLYPGNSSLIDFPIVFM------DECLNLAELKKVGQKIVVCQDKNDSLSNQV 378
G + G SL+P + + D P+++ L++++ IV+C D N S+Q+
Sbjct: 241 GLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENTIVIC-DDNGDFSDQM 299
Query: 379 DNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKT 438
I A + +FIS+ G+ P V +N K G + +Y+K TATI FQ+T
Sbjct: 300 RIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQET 359
Query: 439 ELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNS-KLSFSNF 497
L TKPAP VA+ S+RGPS S + KPD++APG ILAA+P N+ + + L +++
Sbjct: 360 YLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDY 419
Query: 498 NLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPA 557
L+SGTSMA P AAGIAA+L+ AHPEWSP+AIRSA+MTT+D DNT IKD D+NK A
Sbjct: 420 ILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKD-SDNNKAA 478
Query: 558 TPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQTITR-SYSVNCSTSSL 616
TP+ MGAGH++P++ALDPGL+YDAT +DYV+LLC+LN T ++ +TI R S S NCS S
Sbjct: 479 TPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSNPSA 538
Query: 617 DLNYPSFIAFFNANESKSV--QEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLTFK 674
DLNYPSFIA ++ + ++ Q+F+RTVTNVG+G +TY A + K SV P L FK
Sbjct: 539 DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFK 598
Query: 675 GKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVVKSPIVVTSL 723
K KQSY L I + ++W+E G H V+SPIV + +
Sbjct: 599 NKNEKQSYTLTIRYIGDEGQS--RNVGSITWVEQNGNHSVRSPIVTSPI 645
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 604 bits (1559), Expect = 0.0
Identities = 242/655 (36%), Positives = 350/655 (53%), Gaps = 51/655 (7%)
Query: 85 TTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECES 144
TT S FLG S+ +I++GV+DTG+WPES S++D G + P +WKG CE+
Sbjct: 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 145 GTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERAS 204
F CN+K+IGAR ++ G P +N PRD NGHGTHT+STAAG V +A+
Sbjct: 59 SNNFR---CNRKIIGARSYHIG----RPISPGDVNGPRDTNGHGTHTASTAAGGLVSQAN 111
Query: 205 YFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDL 264
+G +GTA G PLAR+A YK WN+G +DI+AA D AI DGVD++S+S+G
Sbjct: 112 LYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRH 171
Query: 265 Y-EDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLG 323
Y D +AI +F A+E+ I S SAGN GP T + PW+++VAA TMDR+ + +G
Sbjct: 172 YFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIG 231
Query: 324 NGNTVTGLSLYPGNS------SLIDFPIVFMDECL------NLAELKKVGQKIVVCQDKN 371
NG + G+S+ ++ S D P D+ + KIVVC
Sbjct: 232 NGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVC---- 287
Query: 372 DSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATA 431
++ + ++ + GV ++ ++ P+ ++ YI + A
Sbjct: 288 EASFGPHEFFKSLDGAAGVLMTSNTR-DYADSYPLPSSVLDPNDLLATLRYIYSIRSPGA 346
Query: 432 TIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSK 491
TI F+ T + AP V S+SSRGP+ + V+KPD+ PG ILAAWPS V
Sbjct: 347 TI-FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRN 405
Query: 492 LSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIG 551
+ FN+ SGTSM+CP GIA ++ +P WSPAAI+SA+MTT+ +
Sbjct: 406 ---TLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNAR-------- 454
Query: 552 DDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQTITRSYSVNC 611
P A G+GH+NP KA+ PGL+YDA DYV LC + ++ IT YS
Sbjct: 455 --FNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACT 512
Query: 612 STSS---LDLNYPSFIAFFNANESKSVQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDP 668
S ++ DLNYPSF + +++ + F RT+T+V STY A ++ +G SV+P
Sbjct: 513 SGNTGRVWDLNYPSFGLSVSPSQTFNQ-YFNRTLTSVAPQASTYRAMISAPQGLTISVNP 571
Query: 669 DKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHVVKSPIVVTSL 723
+ L+F G ++S+ L + G + V L W + G H V+SPI +TSL
Sbjct: 572 NVLSFNGLGDRKSFTLTVRGSIKGF----VVSASLVW--SDGVHYVRSPITITSL 620
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 463 bits (1193), Expect = e-151
Identities = 115/618 (18%), Positives = 200/618 (32%), Gaps = 75/618 (12%)
Query: 99 GAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNS----SLCN 154
+ G ++ V+D G E++ T+ + K + E + + N
Sbjct: 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVN 67
Query: 155 KKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTAL 214
K+ ++K HGTH S +G+ A
Sbjct: 68 DKVAYYHDYSKD------------GKTAVDQEHGTHVSGILSGN----APSETKEPYRLE 111
Query: 215 GTAPLARVAMYKALWNEGS--FTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLY--EDPVA 270
G P A++ + + G + + AI AI G V++MS G + D
Sbjct: 112 GAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETK 171
Query: 271 IATFAAIEKNIFVSTSAGNQGPFIGTLH---------------NGIPWVMTVAAGTMDRE 315
A A K + + TSAGN F G +TVA+ + D++
Sbjct: 172 KAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQ 231
Query: 316 LGATLTLGNGNTVTGLSLYPGNSSL---IDFPIVFMDECLNLAELKKVGQKIVVCQDKND 372
L T+ + + + + + + + K V KI + + +
Sbjct: 232 LTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDI 291
Query: 373 SLSNQVDNIQNASVSGGVFISDFDGLEFFLQS---SFPAVFMNSKTGDILKDYIKIENNA 429
+++ + A G + + D PA F++ K G +LKD
Sbjct: 292 DFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNP----QK 347
Query: 430 TATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTN 489
T T L T ++ +SS G + +KPD+ APG IL++ +N
Sbjct: 348 TITFNATPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVANN------- 398
Query: 490 SKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKD 549
+ SGTSM+ P AGI LL+ + P S + + +++
Sbjct: 399 ------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALY 452
Query: 550 IGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRI-QTITRSYS 608
D+ +P GAG ++ KA + T +D S LN + T+
Sbjct: 453 DEDEKAYFSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFEVTVNVH-- 508
Query: 609 VNCSTSSLDLNYPSFIAFFNANESKSVQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDP 668
N S +L Y + + + V S ++ +V
Sbjct: 509 -NKSDKPQELYYQATVQTDKVDGK-----HFALAPKVLYETSWQKITIPANSSKQVTVPI 562
Query: 669 DKLTFKGKYAKQSYKLRI 686
D F Q
Sbjct: 563 DASRFSKDLLAQMKNGYF 580
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 6e-26
Identities = 83/507 (16%), Positives = 149/507 (29%), Gaps = 128/507 (25%)
Query: 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
+ I ++D+G ++ L + G
Sbjct: 16 LSDSQ--AGNRTICIIDSGYDRS--------------------------HNDLNANNVTG 47
Query: 160 ARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPL 219
G P + N HGTH + T A G G P
Sbjct: 48 TNNSGTG----------NWYQPGNNNAHGTHVAGTIAAI--------ANNEGVV-GVMPN 88
Query: 220 ARVAMY--KALWNEGS-FTSDIIAAIDQAIID-GVDVLSMSLGLDGVDLYEDPVAIATFA 275
++ K G ++S ++AAID + G +V++MSLG G E A+
Sbjct: 89 QNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERN-ALN--T 145
Query: 276 AIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDREL------GATLTLG------ 323
+ + +AGN G + VM+VAA + + + +
Sbjct: 146 HYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAI 205
Query: 324 -----------NGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVC----- 367
T+ G S + + + C
Sbjct: 206 LSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGT 265
Query: 368 QDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIEN 427
+++N++ ++ G + + + ++ L++ ++
Sbjct: 266 SFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDA 325
Query: 428 NATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQ 487
N+ T+ + A +A + G S V G+ +
Sbjct: 326 NSDITV----PSVSVDRATGLALKAKLGQST--------TVSNQGNQDYEYY-------- 365
Query: 488 TNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDI 547
+GTSMA P +G+A L+ HPE S + +R+A+ T+D D+
Sbjct: 366 -------------NGTSMATPHVSGVATLVWSYHPECSASQVRAALNATAD-------DL 405
Query: 548 KDIGDDNKPATPIAMGAGHINPDKALD 574
G DN G G IN A
Sbjct: 406 SVAGRDN------QTGYGMINAVAAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 2e-23
Identities = 66/226 (29%), Positives = 98/226 (43%), Gaps = 24/226 (10%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+ +SSRGP+ LKP+V+APG+ I+AA S + + + GT+MA
Sbjct: 308 VITDFSSRGPTADN--RLKPEVVAPGNWIIAARAS----GTSMGQPINDYYTAAPGTAMA 361
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGH 566
P AGIAALL AHP W+P +++A++ T+D + D IA GAG
Sbjct: 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETAD----------IVKPD--EIADIAYGAGR 409
Query: 567 INPDKALDPGLIYDATTEDYVSLLCALN--LTMKRIQTITRSYSVNCSTSSLDLN-YPSF 623
+N KA T YVS + + T+ +T + + S S LDL Y
Sbjct: 410 VNAYKAAYYDNYAKLTFTGYVSNKGSQSHQFTISGAGFVTATLYWDNSGSDLDLYLYDPN 469
Query: 624 IAFFNANESKSVQEFQRTVTNVGEGVSTYTASVTPLKGF-NFSVDP 668
+ + + + N G T+T V G N+ VD
Sbjct: 470 GNQVDYSYTAYYGFEKVGYYNPTAG--TWTIKVVSYSGSANYQVDV 513
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 4e-23
Identities = 67/295 (22%), Positives = 102/295 (34%), Gaps = 66/295 (22%)
Query: 42 KLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIR-----------DLPVKPHTTHSSQ 90
K+ Y Y H++ + + +L + D VK
Sbjct: 61 KIKYNY-HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGL 119
Query: 91 FLGLNP--KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQF 148
+ W + G I IG++DTG+ D ++ + G
Sbjct: 120 DESAAQVMATNMWNLGYDGSGITIGIIDTGI--------DASHPDLQGKVIG-------- 163
Query: 149 NSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGY 208
F N +P D NGHGTH +S AAG+ AS Y
Sbjct: 164 ----------WVDFVNGK------------TTPYDDNGHGTHVASIAAGT--GAASNGKY 199
Query: 209 AIGTALGTAPLARVAMYKALWNEGS-FTSDIIAAID----QAIIDGVDVLSMSLGLDGVD 263
G AP A++ K L +GS SDII +D G+ V+++SLG
Sbjct: 200 K-----GMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSS 254
Query: 264 LYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHN--GIPWVMTVAAGTMDREL 316
D ++ A A + + V +AGN GP T+ + V+TV A +
Sbjct: 255 DGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDVI 309
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 37/128 (28%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
AS+SS GP + DVMAPG SI + P N + +GTSMA
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMA 223
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGH 566
P AG AAL+ HP W+ +RS++ T+ +GD G G
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTT----------KLGDSF------YYGKGL 267
Query: 567 INPDKALD 574
IN A
Sbjct: 268 INVQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 6e-20
Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FTSD 237
N +D N HGTH + T A +IG G AP A + K L +GS S
Sbjct: 56 NPFQDNNSHGTHVAGTVAAL--------NNSIGVL-GVAPSASLYAVKVLGADGSGQYSW 106
Query: 238 IIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL 297
II I+ AI + +DV++MSLG + A A+ + V +AGN+G +
Sbjct: 107 IINGIEWAIANNMDVINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSS 163
Query: 298 HNGIP----WVMTVAAGTMDREL 316
G P V+ V A +
Sbjct: 164 TVGYPGKYPSVIAVGAVDSSNQR 186
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 2e-22
Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 23/132 (17%)
Query: 441 GTKPAPSVASYSSRGPSIS----CPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSN 496
VA YSSRG + ++ APG S+ + W +
Sbjct: 196 QQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG-------------G 242
Query: 497 FNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKP 556
+N SGTSMA P +G+AA + +P S +RS + + S D IGDD
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDY-- 300
Query: 557 ATPIAMGAGHIN 568
A G G
Sbjct: 301 ----ASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-19
Identities = 57/218 (26%), Positives = 76/218 (34%), Gaps = 52/218 (23%)
Query: 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
+ G I I V+DTGV + L N
Sbjct: 18 TLTSTTGGSGINIAVLDTGVNTS--------------------------HPDLVNNVEQC 51
Query: 160 ARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPL 219
F T NS D NGHGTH + TA + G G AP
Sbjct: 52 KDFTGAT--------TPINNSCTDRNGHGTHVAGTALAD--GGSDQAGIY-----GVAPD 96
Query: 220 ARVAMYKALWNEGS-FTSDIIAAIDQAIIDGV-----DVLSMSLGLDGVDLYEDPVAIAT 273
A + YK L + GS ++ DI AAI A ++SMSLG ++ A
Sbjct: 97 ADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA---NNSLISSAV 153
Query: 274 FAAIEKNIFVSTSAGNQGPFIGTLHN--GIPWVMTVAA 309
A K + + +AGN G GT+ +P + VAA
Sbjct: 154 NYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAA 191
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 5e-22
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 37/127 (29%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+ AS+SS G + +VMAPG + + +P+N + +GTSMA
Sbjct: 184 NRASFSSVGAEL--------EVMAPGAGVYSTYPTN-------------TYATLNGTSMA 222
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGH 566
P AG AAL+ HP S + +R+ + +T+ +G G G
Sbjct: 223 SPHVAGAAALILSKHPNLSASQVRNRLSSTAT----------YLGSSFY------YGKGL 266
Query: 567 INPDKAL 573
IN + A
Sbjct: 267 INVEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 6e-22
Identities = 51/222 (22%), Positives = 72/222 (32%), Gaps = 57/222 (25%)
Query: 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
G ++ + V+DTG+ N G G
Sbjct: 16 VQAQGFKGANVKVAVLDTGIQASHPDLNVVG----------------------------G 47
Query: 160 ARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPL 219
A F D NGHGTH + T A G G AP
Sbjct: 48 ASFVAGE------------AYNTDGNGHGTHVAGTVAAL--------DNTTGVL-GVAPS 86
Query: 220 ARVAMYKALWNEGS-FTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIE 278
+ K L + GS S I++ I+ A +G+DV++MSLG + A A
Sbjct: 87 VSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS---GSTAMKQAVDNAYA 143
Query: 279 KNIFVSTSAGNQGPFIGTLHNGIP----WVMTVAAGTMDREL 316
+ + V +AGN G T G P V+ V A +
Sbjct: 144 RGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNR 185
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 8e-22
Identities = 49/238 (20%), Positives = 80/238 (33%), Gaps = 35/238 (14%)
Query: 442 TKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQS 501
K +V +++SR P I V APG +I + + S L +
Sbjct: 413 EKLPGNVYTWTSRDPCIDG--GQGVTVCAPGGAIASVPQFTM-----------SKSQLMN 459
Query: 502 GTSMACPQAAGIAALLRGA----HPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPA 557
GTSMA P AG ALL + E+SP +I+ AI T+
Sbjct: 460 GTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTA--------------TKLGYV 505
Query: 558 TPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQTITRSYSVNCSTSSLD 617
P A G G +N +KA + + + ++ + + + + + N ++
Sbjct: 506 DPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQGVQRNSIDYNVY 565
Query: 618 LNYPSFIAFFNANESKSVQEFQRTVTNVGEGVSTYTASVTPLKG---FNFSVDPDKLT 672
+ P F A+ R + A + G VDP L
Sbjct: 566 IE-PIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTGLQ 622
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 88.0 bits (217), Expect = 5e-18
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 22/146 (15%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS---FT 235
++ HGTH SS A+G+ + G AP A++
Sbjct: 264 EVVGMSSPHGTHVSSIASGN--------HSSRDVD-GVAPNAKIVSMTIGDGRLGSMETG 314
Query: 236 SDIIAAIDQAII-----DGVDVLSMSLGLDGVDLYEDPVAIA-TFAAIEKNIFVSTSAGN 289
+ ++ A+ + + +DV++MS G + + + SAGN
Sbjct: 315 TALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGN 374
Query: 290 QGPFIGTLHN----GIPWVMTVAAGT 311
GP + T+ P ++ V A
Sbjct: 375 HGPALCTVGTPPDISQPSLIGVGAYV 400
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 2e-21
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 37/127 (29%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+ AS+S G + D++APG ++ + +P + + +GTSMA
Sbjct: 179 NRASFSQYGAGL--------DIVAPGVNVQSTYPGS-------------TYASLNGTSMA 217
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGH 566
P AG AAL++ +P WS IR+ + T+ +G N G+G
Sbjct: 218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTA----------TSLGSTN------LYGSGL 261
Query: 567 INPDKAL 573
+N + A
Sbjct: 262 VNAEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 1e-18
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 13/139 (9%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FTSD 237
S +D NGHGTH + T A +IG G AP A + K L GS S
Sbjct: 54 PSTQDGNGHGTHVAGTIAAL--------NNSIGVL-GVAPSAELYAVKVLGASGSGSVSS 104
Query: 238 IIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTL 297
I ++ A +G+ V ++SLG + A +A + + V ++GN G +
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISY 161
Query: 298 HNGIPWVMTVAAGTMDREL 316
M V A +
Sbjct: 162 PARYANAMAVGATDQNNNR 180
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 5e-20
Identities = 44/217 (20%), Positives = 71/217 (32%), Gaps = 27/217 (12%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFS-----NFNLQS 501
VA +SSR + V APG +IL+ P ++ + ++
Sbjct: 327 RVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQ 378
Query: 502 GTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIA 561
GTSMA P G+ A+L P P IR + T+ D
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAF----------DFNG---NGWDHD 425
Query: 562 MGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQTITRSYSVNCSTSSLDLNYP 621
G G + D AL L E++ ++ + T+ S + + P
Sbjct: 426 TGYGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNF-GVPTVFVSMMRDNGSCYYAKTGP 484
Query: 622 SFIAFFNANESKSVQEFQRTVTNVGEGVSTYTASVTP 658
IA F +S + F + ++ Y P
Sbjct: 485 DGIARFPHIDSGTYDIFVGGPDHWDRALAPYDGESIP 521
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 8e-13
Identities = 45/220 (20%), Positives = 64/220 (29%), Gaps = 58/220 (26%)
Query: 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
W + G +II+ VVDTGV + L + + G
Sbjct: 147 LWEEAS-GTNIIVAVVDTGVDGT--------------------------HPDLEGQVIAG 179
Query: 160 ARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPL 219
R L GTH + T A G G AP
Sbjct: 180 YRPAFDEELPAGT-------DSSYGGSAGTHVAGTIAAK--------KDGKGIV-GVAPG 223
Query: 220 ARVAMYKALWNEGSF-------TSDIIAAIDQAIIDGVDVLSMSLGLDGVD-LYEDPVAI 271
A++ + + A I A G V++ S G G ++ A
Sbjct: 224 AKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKE--AF 281
Query: 272 ATFAAIEKNIFVSTSAGNQGPFIGTLHN--GIPWVMTVAA 309
A+E + + SAGN G P V+ VAA
Sbjct: 282 D--YAMEHGVVMVVSAGNNTS-DSHHQYPAGYPGVIQVAA 318
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 9e-20
Identities = 59/312 (18%), Positives = 88/312 (28%), Gaps = 85/312 (27%)
Query: 42 KLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKS--- 98
++Y + + + + LK PG D S G +
Sbjct: 25 HIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTI 83
Query: 99 ----------GAWPVSKF-GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQ 147
W ++ I + V+DTGV +
Sbjct: 84 PWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYD------------------------- 118
Query: 148 FNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFG 207
+ L + K D NGHGTH T A
Sbjct: 119 -HPDLAANIAWCVSTLRGKVSTKL-------RDCADQNGHGTHVIGTIAAL--------N 162
Query: 208 YAIGTALGTAPLARVAMYKALWNEGS-FTSDIIAAIDQAIID------------------ 248
IG G AP ++ + L GS SDI I+QAI+
Sbjct: 163 NDIGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPD 221
Query: 249 --GVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHN--GIPWV 304
+V+SMSLG D Y I A I + ++GN+G + P V
Sbjct: 222 DDAAEVISMSLGGPADDSYLYD-MII--QAYNAGIVIVAASGNEGA--PSPSYPAAYPEV 276
Query: 305 MTVAAGTMDREL 316
+ V A + +
Sbjct: 277 IAVGAIDSNDNI 288
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 4e-15
Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 49/141 (34%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R P +V APG IL+ +P + ++ GT+MA
Sbjct: 287 NIASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMA 323
Query: 507 CPQAAGIAALLRGAH-------------PEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDD 553
P +G+ AL++ A+ + S +R + T+D D+ G D
Sbjct: 324 TPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITAD-------DLGPTGWD 376
Query: 554 NKPATPIAMGAGHINPDKALD 574
G G + A+
Sbjct: 377 A------DYGYGVVRAALAVQ 391
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 91.5 bits (227), Expect = 1e-19
Identities = 56/335 (16%), Positives = 92/335 (27%), Gaps = 86/335 (25%)
Query: 29 EANTNIFNNISSSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIR-DLPVKPHTTH 87
A N S ++Y L+ +T AL + I I +
Sbjct: 54 TATFNKLVKKKSLNVVYNIPE-LHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEK 112
Query: 88 SSQFLGLNPKSG-------------AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEI 134
+ ++ + I ++DTGV N
Sbjct: 113 TIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGV-----MKN------- 160
Query: 135 PSRWKGECESGTQFNSSLCNKKLIGARFF--NKGLLAKNPTITIAMNSPRDANGHGTHTS 192
+ L N ++ G P T ++ D GHGT S
Sbjct: 161 --------------HDDLKNNFSTDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVS 206
Query: 193 STAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDV 252
+ A G +G AP + MY+ ++ + + AI QA DG V
Sbjct: 207 GQTS------------ANGKLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQV 254
Query: 253 LSMSLGLDGVDLYEDPVAI-------------ATFAAIEKNIFVSTSAGNQGPFIGTLHN 299
+++S+G + D A A +K V +AGN G +
Sbjct: 255 INISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQK 314
Query: 300 ------------------GIPWVMTVAAGTMDREL 316
+ V+TV + L
Sbjct: 315 LKLQREYQGNGEVKDVPASMDNVVTVGSTDQKSNL 349
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 1e-15
Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 31/138 (22%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSN---------F 497
+++ +S+ G + D+ APG S + + N +
Sbjct: 348 NLSEFSNFGMN-------YTDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRY 400
Query: 498 NLQSGTSMACPQAAGIAALLRGA-HPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKP 556
Q+GT++A P+ +G AL+ H E P + S +N
Sbjct: 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSR--------- 451
Query: 557 ATPIAMGAGHINPDKALD 574
G G ++ KAL+
Sbjct: 452 -----YGHGELDVYKALN 464
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 1e-19
Identities = 58/224 (25%), Positives = 75/224 (33%), Gaps = 62/224 (27%)
Query: 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
AW V+K I V+DTGV + L K + G
Sbjct: 23 AWDVTKGSSGQEIAVIDTGVDYT--------------------------HPDLDGKVIKG 56
Query: 160 ARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPL 219
F + P D N HGTH + AA A G A G AP
Sbjct: 57 YDFVDND------------YDPMDLNNHGTHVAGIAAAET-------NNATGIA-GMAPN 96
Query: 220 ARVAMYKALWNEGS-FTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIE 278
R+ +AL GS SDI AI A G +V+++SLG D + A+ A
Sbjct: 97 TRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN-AVN--YAWN 153
Query: 279 KNIFVSTSAGNQGPFIGTLHNGI------PWVMTVAAGTMDREL 316
K V +AGN G + V+ V A L
Sbjct: 154 KGSVVVAAAGNNGS------STTFEPASYENVIAVGAVDQYDRL 191
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 4e-18
Identities = 35/128 (27%), Positives = 47/128 (36%), Gaps = 38/128 (29%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+AS+S+ G + DV+APG I++ N + SGTSMA
Sbjct: 190 RLASFSNYGTWV--------DVVAPGVDIVSTITGN-------------RYAYMSGTSMA 228
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGH 566
P AG+AALL + IR AI T+D I G
Sbjct: 229 SPHVAGLAALLASQGR--NNIEIRQAIEQTAD----------KISGTGT-----YFKYGR 271
Query: 567 INPDKALD 574
IN A+
Sbjct: 272 INSYNAVT 279
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 90.8 bits (225), Expect = 2e-19
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
VA +SSRGP+ +KPDVMAPG IL+A S S + + GTSMA
Sbjct: 201 HVAQFSSRGPTKDG--RIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYM-GGTSMA 257
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGH 566
P AG A LR + + +++ + +DI + G G
Sbjct: 258 TPIVAGNVAQLREHFVKNRGITPKPSLLKA--ALIAGAADIGLGYPNG------NQGWGR 309
Query: 567 INPDKALDPGLIYDATT 583
+ DK+L+ + ++++
Sbjct: 310 VTLDKSLNVAYVNESSS 326
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 7e-17
Identities = 40/225 (17%), Positives = 65/225 (28%), Gaps = 49/225 (21%)
Query: 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKG 166
G+ I+ V DTG+ + K
Sbjct: 21 GQGQIVAVADTGLDTGRNDSSMHEA--------------------FRGKITALYALGRT- 59
Query: 167 LLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYK 226
N+ D NGHGTH + + G+ T G AP A +
Sbjct: 60 ------------NNANDTNGHGTHVAGSVLGNG-----------STNKGMAPQANLVFQS 96
Query: 227 ALWNEGSFT---SDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFV 283
+ + G S++ QA G + + S G Y + ++ +
Sbjct: 97 IMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTI 156
Query: 284 STSAGNQGPFIGTLHN--GIPWVMTVAAGTMDRELGATLTLGNGN 326
+AGN+GP GT+ +TV A R + +
Sbjct: 157 LFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINH 201
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 51/225 (22%), Positives = 76/225 (33%), Gaps = 63/225 (28%)
Query: 99 GAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLI 158
AW +++ G I +VDTGV + L K +
Sbjct: 22 QAWDIAE-GSGAKIAIVDTGVQSN--------------------------HPDLAGKVVG 54
Query: 159 GARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAP 218
G F + ++P++ NGHGTH + AA + G A GTAP
Sbjct: 55 GWDFVDND------------STPQNGNGHGTHCAGIAAAVT-------NNSTGIA-GTAP 94
Query: 219 LARVAMYKALWNEGS-FTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAI 277
A + + L N GS + + I A G V+S+SLG + A+ A
Sbjct: 95 KASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQ-QAVN--YAW 151
Query: 278 EKNIFVSTSAGNQGPFIGTLHNGI------PWVMTVAAGTMDREL 316
K V +AGN G + VA+ +
Sbjct: 152 NKGSVVVAAAGNAGN------TAPNYPAYYSNAIAVASTDQNDNK 190
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 5e-18
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 38/128 (29%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+ +S+S+ G + DV APG SI + +P++ + SGTSMA
Sbjct: 189 NKSSFSTYGSWV--------DVAAPGSSIYSTYPTS-------------TYASLSGTSMA 227
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGH 566
P AG+A LL S + IR+AI T+D T + G
Sbjct: 228 TPHVAGVAGLLASQGR--SASNIRAAIENTADKISGTGTYW---------------AKGR 270
Query: 567 INPDKALD 574
+N KA+
Sbjct: 271 VNAYKAVQ 278
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 34/128 (26%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+ S G + D+ APG +I P SGTS A
Sbjct: 235 GGITGSRFGNN-------WVDIAAPGQNITFLRPDA-------------KTGTGSGTSEA 274
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGH 566
+G+ A + +P + ++ ++ ++D + +
Sbjct: 275 TAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDKVT--------------EGRV 320
Query: 567 INPDKALD 574
+N +KA+
Sbjct: 321 LNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 3e-16
Identities = 38/280 (13%), Positives = 75/280 (26%), Gaps = 67/280 (23%)
Query: 66 LKSSPGYISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVWPESES 125
LK YI + + F + ++ +++ VVD+GV
Sbjct: 2 LKILWTYILFLLFISASARAEKPWYFDAIGLTETTMSLTDKNTPVVVSVVDSGV------ 55
Query: 126 YNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDAN 185
F L + + F G +P
Sbjct: 56 ---------------------AFIGGLSDSEFAKFSFTQDG----SPFPV---KKSEALY 87
Query: 186 GHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFT----SDIIAA 241
HGT +S A G G P A ++ + + + + + I +
Sbjct: 88 IHGTAMASLIASR-----------YGIY-GVYPHALISSRRVIPDGVQDSWIRAIESIMS 135
Query: 242 IDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQG---------- 291
++++S G GV + + + + + GN G
Sbjct: 136 NVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQ 195
Query: 292 -------PFIGTLHNGIPWVMTVAAGTMDRELGATLTLGN 324
+ +++ V+ VAA R+ + G
Sbjct: 196 RIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGG 235
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 3e-18
Identities = 53/229 (23%), Positives = 76/229 (33%), Gaps = 58/229 (25%)
Query: 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
W S G IIGV+DTG ++ R G G
Sbjct: 33 VWRASAKGAGQIIGVIDTGC--------QVDHPDLAERIIG------------------G 66
Query: 160 ARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPL 219
+ D NGHGTH + T A + G G AP
Sbjct: 67 VNLTTDY--------GGDETNFSDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPK 109
Query: 220 ARVAMYKALWNEGS-FTSDIIAAIDQAI------IDGVDVLSMSLGLDGVDLYEDPVAIA 272
A + + KAL +GS I AI A+ + + +++MSLG + + A
Sbjct: 110 ADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPT---DSEELHDA 166
Query: 273 TFAAIEKNIFVSTSAGNQGPFIGTLHN-----GIPWVMTVAAGTMDREL 316
A+ N+ V +AGN+G + V+ V A D L
Sbjct: 167 VKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRL 215
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 39/133 (29%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++ +++ I D++APG I + + + + SGT+MA
Sbjct: 214 RLSDFTNTNEEI--------DIVAPGVGIKSTYLDS-------------GYAELSGTAMA 252
Query: 507 CPQAAGIAALLRGAHPE-----WSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIA 561
P AG AL+ + S I + ++ + IG +
Sbjct: 253 APHVAGALALIINLAEDAFKRSLSETEIYAQLVRRAT----------PIGFTAQAEGN-- 300
Query: 562 MGAGHINPDKALD 574
G ++ + +
Sbjct: 301 -GFLTLDLVERIT 312
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 4e-18
Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 32/132 (24%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+ +S+ G + + ++APG+ IL A P +GTSMA
Sbjct: 252 TPCHFSNWGGNNTKE-----GILAPGEEILGAQPCT------------EEPVRLTGTSMA 294
Query: 507 CPQAAGIAALLRGAHPE----WSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAM 562
P GI+ALL + A+R+A++ T+ D P
Sbjct: 295 APVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPC-----------DPEVVEEPERC 343
Query: 563 GAGHINPDKALD 574
G +N A+
Sbjct: 344 LRGFVNIPGAMK 355
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 8e-16
Identities = 32/226 (14%), Positives = 60/226 (26%), Gaps = 22/226 (9%)
Query: 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
+ I I ++D + ++++ W E + +
Sbjct: 41 LHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAE-PITPEDYAAFQSIRD 99
Query: 160 ARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPL 219
K + N H H +ST G G AP
Sbjct: 100 QGLKGKEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQE---------HSPVF-GIAPN 149
Query: 220 ARVAMYKALWNEGSFTS------DIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPV---A 270
RV ++ AID A+ G +++ + + + A
Sbjct: 150 CRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQA 209
Query: 271 IATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDREL 316
I + N+ + + GN L +P + V A +D
Sbjct: 210 IK--KCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTP 253
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 7e-17
Identities = 50/234 (21%), Positives = 77/234 (32%), Gaps = 38/234 (16%)
Query: 99 GAWPVSKFGKDIIIGVVDTGVW--PESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKK 156
W + G+++++ VVDTG+ + + G I + G +
Sbjct: 23 KVWDMGFTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDW 82
Query: 157 LIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGT 216
+ D++ HG+H + T A IG A G
Sbjct: 83 FDNWACGGRP---------DPRKERSDSSWHGSHVAGTIAAVT-------NNRIGVA-GV 125
Query: 217 APLARVAMYKALWNEGSFTSDIIAAIDQAI----------IDGVDVLSMSLGLDGVDLYE 266
A A+V +AL G + SDI + A + V++MSLG DG Y
Sbjct: 126 AYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYN 185
Query: 267 DPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIP----WVMTVAAGTMDREL 316
I A V +AGN+ N P V++V A T
Sbjct: 186 AQTMID--RATRLGALVVVAAGNEN---QNASNTWPTSCNNVLSVGATTSRGIR 234
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 9e-17
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 32/132 (24%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
AS+S+ G + D+ APG IL+ S +++ ++ +GTSMA
Sbjct: 233 IRASFSNYGVDV--------DLAAPGQDILSTVDSGTRRPVSDA------YSFMAGTSMA 278
Query: 507 CPQAAGIAALL----RGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAM 562
P +G+AAL+ + +PA ++ +++T+ A+
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTT--------------SPFNGRLDRAL 324
Query: 563 GAGHINPDKALD 574
G+G ++ + A++
Sbjct: 325 GSGIVDAEAAVN 336
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 7e-16
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 23/103 (22%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
S +S+S+ G + D+ APG I +AW + SGTSMA
Sbjct: 184 SRSSFSNWGSCV--------DLFAPGSQIKSAWYD-------------GGYKTISGTSMA 222
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKD 549
P AG+AAL + +P + + S +++N SD +
Sbjct: 223 TPHVAGVAALYLQENNGLTPLQLTGLL--NSRASENKVSDTRG 263
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 5e-11
Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 21/116 (18%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FTSD 237
D NGHGTH + T GS G A + + L GS TS
Sbjct: 62 ADSSDCNGHGTHVAGTIGGSQY--------------GVAKNVNIVGVRVLSCSGSGTTSG 107
Query: 238 IIAAIDQAIIDGV--DVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQG 291
+I+ +D + V +MSLG + V AI+ + +AGN
Sbjct: 108 VISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQ----GAIQSGVSFMLAAGNSN 159
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 8e-16
Identities = 50/242 (20%), Positives = 73/242 (30%), Gaps = 73/242 (30%)
Query: 100 AWPVSKF-GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLI 158
W ++ I + V+DTGV + + L
Sbjct: 20 VWSITDGSVSVIQVAVLDTGVDYD--------------------------HPDLAANIAW 53
Query: 159 GARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAP 218
+ K D NGHGTH T A IG G AP
Sbjct: 54 CVSTLRGKVSTKL-------RDCADQNGHGTHVIGTIAAL--------NNDIGVV-GVAP 97
Query: 219 LARVAMYKALWNEGS-FTSDIIAAIDQAIID--------------------GVDVLSMSL 257
++ + L GS SDI I+QAI+ +V+SMSL
Sbjct: 98 GVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSL 157
Query: 258 GLDGVD-LYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHN--GIPWVMTVAAGTMDR 314
G D D + A I + ++GN+G + P V+ V A +
Sbjct: 158 GGPADDSYLYDMII----QAYNAGIVIVAASGNEGA--PSPSYPAAYPEVIAVGAIDSND 211
Query: 315 EL 316
+
Sbjct: 212 NI 213
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 49/141 (34%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
++AS+S+R P +V APG IL+ +P + ++ GT+MA
Sbjct: 212 NIASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMA 248
Query: 507 CPQAAGIAALLRGAH-------------PEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDD 553
P +G+ AL++ A+ + S +R + T+D D+ G D
Sbjct: 249 TPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITAD-------DLGPTGWD 301
Query: 554 NKPATPIAMGAGHINPDKALD 574
G G + A+
Sbjct: 302 A------DYGYGVVRAALAVQ 316
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 2e-15
Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 21/147 (14%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D+ APG+ I+ A + F QSGTS A AGIAA++ A PE +
Sbjct: 208 DLFAPGEDIIGASSD-----------CSTCFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 527 AAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATP-------IAMGAGHINPDKALDPGLIY 579
A +R ++ S + ++ +D + TP +
Sbjct: 257 AELRQRLI--HFSAKDVINEAW-FPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 313
Query: 580 DATTEDYVSLLCALNLTMKRIQTITRS 606
T CA + + + +RS
Sbjct: 314 GPTRMATAIARCAPDEELLSCSSFSRS 340
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 25/120 (20%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FTSD 237
+ HGTH + +G G A A + + L +G S
Sbjct: 66 RQASKCDSHGTHLAGVVSGRDA--------------GVAKGASMRSLRVLNCQGKGTVSG 111
Query: 238 IIAAIDQAIID------GVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQG 291
+ ++ G V+ + L + + + T+AGN
Sbjct: 112 TLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVTAAGNFR 167
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 24/107 (22%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+ AS+S+ G + D+ APG SI +AW + S + +GTSMA
Sbjct: 184 ARASFSNYGSCV--------DLFAPGASIPSAWYT-----------SDTATQTLNGTSMA 224
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDD 553
P AG+AAL +P +PA++ SAI+ + T + IG
Sbjct: 225 TPHVAGVAALYLEQNPSATPASVASAILNGA-----TTGRLSGIGSG 266
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 7e-11
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 21/116 (18%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FTSD 237
+ +D NGHGTH + T G +Y G A + + L GS TS
Sbjct: 62 GNGQDCNGHGTHVAGTIGG-----VTY---------GVAKAVNLYAVRVLDCNGSGSTSG 107
Query: 238 IIAAIDQAIIDGVD--VLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQG 291
+IA +D + V +MSLG ++ V +I + + +AGN
Sbjct: 108 VIAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVK----NSIAAGVVYAVAAGNDN 159
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 24/107 (22%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
S +S+S+ G + D+ APG SI ++W + S S N SGTSMA
Sbjct: 186 SRSSFSNYGTCL--------DIYAPGSSITSSWYT-----------SNSATNTISGTSMA 226
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDD 553
P AG+AAL +P SPA + + + T + T + D
Sbjct: 227 SPHVAGVAALYLDENPNLSPAQVTNLLKTRA-----TADKVTDAKTG 268
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 21/116 (18%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FTSD 237
D NGHGTH + T G ++Y G A V + L GS S
Sbjct: 64 YDATDCNGHGTHVAGTIGG-----STY---------GVAKNVNVVGVRVLNCSGSGSNSG 109
Query: 238 IIAAIDQAIIDGV--DVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQG 291
+IA I+ + V +MSLG +D V AA+ I +AGN
Sbjct: 110 VIAGINWVKNNASGPAVANMSLGGGASQATDDAVN----AAVAAGITFVVAAGNDN 161
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 4e-15
Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 21/147 (14%)
Query: 467 DVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSP 526
D+ APG+ I+ A + F QSGTS A AGIAA++ A PE +
Sbjct: 360 DLFAPGEDIIGASSD-----------CSTCFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 527 AAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATP-------IAMGAGHINPDKALDPGLIY 579
A +R + S + ++ +D + TP +
Sbjct: 409 AELRQRL--IHFSAKDVINEAW-FPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 465
Query: 580 DATTEDYVSLLCALNLTMKRIQTITRS 606
T CA + + + +RS
Sbjct: 466 GPTRMATAIARCAPDEELLSCSSFSRS 492
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 1e-14
Identities = 34/278 (12%), Positives = 68/278 (24%), Gaps = 70/278 (25%)
Query: 29 EANTNIFNNISSSKLLYTYSHVLNGFSASLTPAELEALKSSPG--YISSIRDLPVKPHTT 86
+K+L+ + +L GF ++ LE P YI D V +
Sbjct: 97 RLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIE--EDSSVFAQSI 154
Query: 87 ------HSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKG 140
+ + + G + + ++DT + +
Sbjct: 155 PWNLERITPPRYRADE----YQPPDGGSLVEVYLLDTSIQSDHR---------------- 194
Query: 141 ECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYV 200
+ G T + HGTH + +G
Sbjct: 195 ------EIE---------GRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRDA 239
Query: 201 ERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FTSDIIAAIDQAIIDGVD------VL 253
G A A + + L +G S + ++ + V+
Sbjct: 240 --------------GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVV 285
Query: 254 SMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQG 291
+ L + + + T+AGN
Sbjct: 286 LLPLAGGYSRVLNAACQ----RLARAGVVLVTAAGNFR 319
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 3e-13
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 27/107 (25%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+++S+ G + D+ APG SI + W N SGTSMA
Sbjct: 189 VRSTFSNYGRVV--------DIFAPGTSITSTWIG-------------GRTNTISGTSMA 227
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDD 553
P AG+AA L G S A+ I T S T + + I
Sbjct: 228 TPHIAGLAAYLFGLEGG-SAGAMCGRIQTLS-----TKNVLTSIPSG 268
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 32/123 (26%), Positives = 43/123 (34%), Gaps = 26/123 (21%)
Query: 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FT 235
++ RD +GHGTH + T G A + K L + GS
Sbjct: 60 YASTARDGHGHGTHCAGTIGSKTW--------------GVAKKVSIFGVKVLDDSGSGSL 105
Query: 236 SDIIAAIDQAIIDGVD-------VLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAG 288
S+IIA +D D V SMSLG A +FV+ +AG
Sbjct: 106 SNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAA----RLQSSGVFVAVAAG 161
Query: 289 NQG 291
N
Sbjct: 162 NDN 164
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 6e-13
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 27/107 (25%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+S+S+ G + D+ PG IL+ W T S SGTSMA
Sbjct: 188 RRSSFSNYGSVL--------DIFGPGTDILSTWIG----GSTRSI---------SGTSMA 226
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDD 553
P AG+AA L + A+ I T+ D+ +I
Sbjct: 227 TPHVAGLAAYLMTLGKT-TAASACRYIADTA-----NKGDLSNIPFG 267
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 32/123 (26%), Positives = 42/123 (34%), Gaps = 26/123 (21%)
Query: 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS-FT 235
S RD NGHGTH + T G A ++ K L + GS
Sbjct: 59 YYYSSRDGNGHGTHCAGTVGSRTY--------------GVAKKTQLFGVKVLDDNGSGQY 104
Query: 236 SDIIAAIDQAIIDGVD-------VLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAG 288
S IIA +D D + V S+SLG A + V+ +AG
Sbjct: 105 STIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAA----RLQSSGVMVAVAAG 160
Query: 289 NQG 291
N
Sbjct: 161 NNN 163
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 36/256 (14%), Positives = 72/256 (28%), Gaps = 21/256 (8%)
Query: 373 SLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATAT 432
L+ +I +AS DG + +F + G N
Sbjct: 134 GLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREH 193
Query: 433 IQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAP----GDSILAAWPSNLAVSQT 488
+ Y++ ++S + + S LA S+ ++
Sbjct: 194 DS-----------CNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNEK 242
Query: 489 NSKLSFSN---FNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNS 545
+ +GTS + P AAGI AL A+ + ++ ++ TS
Sbjct: 243 QIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNAD 302
Query: 546 DIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQTITR 605
D G K + G G ++ + + ++ L + +
Sbjct: 303 DWATNGVGRKVSHS--YGYGLLDAGAMVALAQNWTTVAPQRKCIVEILVEPKDIGKRLEV 360
Query: 606 SYSVN-CSTSSLDLNY 620
+V C +
Sbjct: 361 RKAVTACLGEPNHITR 376
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 27/193 (13%), Positives = 48/193 (24%), Gaps = 60/193 (31%)
Query: 99 GAWPVSKFGKDIIIGVVDTGVWPESE----------SYNDGGMTEIPSRWKGECESGTQF 148
AW G I++ ++D G+ S++ P
Sbjct: 29 EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPR---------- 78
Query: 149 NSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGY 208
+ + N HGT + A
Sbjct: 79 ------------------------------YTQMNDNRHGTRCAGEVAAVA-------NN 101
Query: 209 AIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDP 268
+ G A AR+ + L +G T + A + + + S S G + D
Sbjct: 102 GVCGV-GVAYNARIGGVRML--DGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDG 158
Query: 269 VAIATFAAIEKNI 281
A A + +
Sbjct: 159 PARLAEEAFFRGV 171
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 6e-07
Identities = 52/331 (15%), Positives = 98/331 (29%), Gaps = 119/331 (35%)
Query: 31 NTNIFNNISSSKLLYTYSHV-LNGFSASLTPAEL-----------------EALKSSPGY 72
+ + +S++ T +H+ L+ S +LTP E+ E L ++P
Sbjct: 274 FKQVTDFLSAA----TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 73 ISSIRDLPVKPHTTHSSQFLGLNPKSGAWPVSKFGKDIIIGV------------VDTGVW 120
+S I + ++ + +N K I + V+
Sbjct: 330 LSIIAES-IRDGLATWDNWKHVN-------CDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 121 PESESYNDGGMTEIPSR-----WKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNP--- 172
P S IP+ W +S ++ + L+ K P
Sbjct: 382 PPS--------AHIPTILLSLIWFDVIKSDVM---------VVVNKLHKYSLVEKQPKES 424
Query: 173 TITI-------AMNSPRDANGH--------------GTHTSSTAAGSYVERASYFGYAIG 211
TI+I + + H Y S+ G+
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--YSHIGH--- 479
Query: 212 TALGTAPLA-RVAMYKALWNEGSFTSDIIAAIDQAII-DGVDVLSMSLGLDGV-DL--YE 266
L R+ +++ ++ + F ++Q I D + L+ + L Y+
Sbjct: 480 -HLKNIEHPERMTLFRMVFLDFRF-------LEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 267 ------DPV------AIATF-AAIEKNIFVS 284
DP AI F IE+N+ S
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICS 562
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 1e-06
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 17/129 (13%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
YS ++ G+ I ++ + N GTS A
Sbjct: 231 LHPPYSEGCSAVMAV----TYSSGSGEYIHSSDING------------RCSNSHGGTSAA 274
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGH 566
P AAG+ LL A+P + ++ + ++ + K + G G
Sbjct: 275 APLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSH-RYGFGK 333
Query: 567 INPDKALDP 575
I+ K ++
Sbjct: 334 IDAHKLIEM 342
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 35/231 (15%), Positives = 65/231 (28%), Gaps = 56/231 (24%)
Query: 99 GAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLI 158
W + G ++ +VD G+ E+E D N
Sbjct: 45 DLWYNNITGAGVVAAIVDDGLDYENEDLKD-------------------------NFCAE 79
Query: 159 GARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAP 218
G+ FN P + + HGT + A +G
Sbjct: 80 GSWDFNDNTNLPKPRL--------SDDYHGTRCAGEIAAK--------KGNNFCGVGVGY 123
Query: 219 LARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIE 278
A+++ + L + + T D A++ +D D+ S S G + + A+
Sbjct: 124 NAKISGIRILSGDIT-TEDEAASLIYG-LDVNDIYSCSWGPADDGRHLQGPSDLVKKALV 181
Query: 279 ---------KNIFVSTSAGNQGPFIGTLH----NGIPWVMTVAAGTMDREL 316
K ++GN G + + +T+ A
Sbjct: 182 KGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLH 232
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P Length = 114 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 3e-04
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 29 EANTNIFNNISSSKLLYTYSHVLNGFSASLTPAELEALKSSPG--YI 73
+K+L+ + +L GF ++ LE P YI
Sbjct: 59 RLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 105
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P Length = 124 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 7e-04
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 40 SSKLLYTYSHVLNGFSASLTPAELEALKSSPG--YI 73
+K+L+ + +L GF ++ LE P YI
Sbjct: 80 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 115
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.9 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.89 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.7 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.48 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.27 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.14 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 97.62 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.75 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 96.59 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 96.2 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 95.91 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 95.33 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 93.22 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.4 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-130 Score=1135.16 Aligned_cols=632 Identities=50% Similarity=0.839 Sum_probs=573.8
Q ss_pred CCCCCcccCCCCCCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeecc
Q 004809 85 TTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFN 164 (729)
Q Consensus 85 ~~~s~~~~gl~~~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~ 164 (729)
|+++|+|+||.+..++|..+.+|+||+|||||||||++||+|.+.|++++|.+|+|.|+.|.+|+.+.||+|++++++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 57899999998777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHH
Q 004809 165 KGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQ 244 (729)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~ 244 (729)
++++....+...+..+++|.+||||||||||||+.+++.+++|++.|+++||||+|+|++||+|+..||..+++++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai~~ 160 (649)
T 3i6s_A 81 KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQ 160 (649)
T ss_dssp HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHHHHHHHH
T ss_pred CcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHHHHHHHH
Confidence 87654332333455678999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHcCCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCC
Q 004809 245 AIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGN 324 (729)
Q Consensus 245 A~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~ 324 (729)
|+++|+||||||||....+++.+++.+++++|+++||+||+||||+|+...++++.+||+|+|||++.||.|...+.++|
T Consensus 161 A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~lgn 240 (649)
T 3i6s_A 161 AVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN 240 (649)
T ss_dssp HHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEETT
T ss_pred HHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEeCC
Confidence 99999999999999877778889999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeeecCCCCCCceeeEEEcC---Cccccccc-ccC--CceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCc
Q 004809 325 GNTVTGLSLYPGNSSLIDFPIVFMD---ECLNLAEL-KKV--GQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGL 398 (729)
Q Consensus 325 g~~~~g~~~~~~~~~~~~~~lv~~~---~c~~~~~~-~~~--~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 398 (729)
|+++.|.++++.......+|++|.. .|.+..++ .++ +||||+|.|+.+.+.+|..+++++|+.|+|++|+. .
T Consensus 241 g~~~~g~sl~~~~~~~~~~plv~~~~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~--~ 318 (649)
T 3i6s_A 241 GLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDP--G 318 (649)
T ss_dssp SCEEEEECCCSSCBCEEEEEEECCTTTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCG--G
T ss_pred CcEEeeeecccCcccCcceeeEecccccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCc--c
Confidence 9999999999887667789999964 69999988 777 99999999999999999999999999999999986 3
Q ss_pred eeecc-ccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEe
Q 004809 399 EFFLQ-SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILA 477 (729)
Q Consensus 399 ~~~~~-~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~s 477 (729)
....+ +.+|++.|+..+|+.|++|++++.+++++|.+..+.++..+++.++.||||||+.+.+++|||||+|||++|++
T Consensus 319 ~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~Ils 398 (649)
T 3i6s_A 319 VFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILA 398 (649)
T ss_dssp GGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCCEEEECSSEEE
T ss_pred ccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCeEEeCCCCeEe
Confidence 34445 89999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred ecCCCCCccccCCCC-CCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCC
Q 004809 478 AWPSNLAVSQTNSKL-SFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKP 556 (729)
Q Consensus 478 a~~~~~~~~~~~~~~-~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~ 556 (729)
+|+....+.....+. +...|..+||||||||||||+||||||+||+|||++||++||+||+++++.+.++.+... ..+
T Consensus 399 a~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~~~~~-~~~ 477 (649)
T 3i6s_A 399 AYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDN-NKA 477 (649)
T ss_dssp ECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCEETTT-SSB
T ss_pred ecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCccccccc-CCc
Confidence 999866554443333 447899999999999999999999999999999999999999999999999999988643 678
Q ss_pred CCCCCCCccccCccCcCCCCccccCChhhHHHHhhhcCCCccceeEeccccccc--cCCCCCCCCCCceeeee-ccCCCc
Q 004809 557 ATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQTITRSYSVN--CSTSSLDLNYPSFIAFF-NANESK 633 (729)
Q Consensus 557 ~~~~~~G~G~vn~~~Al~~glv~d~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~--c~~~~~~lN~ps~~~~~-~~~~~~ 633 (729)
+++++||+|+|||.+|++||||||++.+||++|||++||+.++|+.|++. +++ |+....+||||||++.+ +... .
T Consensus 478 a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~-~~~~~C~~~~~~lNyPs~~~~~~~~~~-~ 555 (649)
T 3i6s_A 478 ATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARS-SASHNCSNPSADLNYPSFIALYSIEGN-F 555 (649)
T ss_dssp CCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTT-TSCC-CCCCCCCCCCSSEEEEECCSSC-C
T ss_pred CCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecC-CCcCCCCCchhhcCCCcEEeecccCCC-C
Confidence 89999999999999999999999999999999999999999999999987 666 98777899999999987 3211 0
Q ss_pred ee--EEEEEEEEecCCCCeEEEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCCCCCCeeEEEEEEEEEcCCc
Q 004809 634 SV--QEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGK 711 (729)
Q Consensus 634 ~~--~~~~rtvtnvg~~~~tY~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~l~~~~~~~~ 711 (729)
.. ++|+|||||||+..+||+++++.|.|++|+|+|++|+|++.+|+++|+|||+...... +. |.||+|+|++.+++
T Consensus 556 ~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~-~~-~~fg~l~w~~~~~~ 633 (649)
T 3i6s_A 556 TLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEG-QS-RNVGSITWVEQNGN 633 (649)
T ss_dssp CCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC----C-CCEEEEEEEETTSC
T ss_pred ccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCC-Cc-eEEEEEEEEcCCCC
Confidence 12 8999999999999999999999999999999999999998999999999999875433 45 89999999933399
Q ss_pred eEEEEEEEEEec
Q 004809 712 HVVKSPIVVTSL 723 (729)
Q Consensus 712 ~~v~~P~~~~~~ 723 (729)
|.||+||+|++.
T Consensus 634 h~vrsPi~v~~~ 645 (649)
T 3i6s_A 634 HSVRSPIVTSPI 645 (649)
T ss_dssp CEEEEEEEEEEC
T ss_pred eEEEEeEEEEEc
Confidence 999999999875
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-117 Score=1025.08 Aligned_cols=599 Identities=39% Similarity=0.654 Sum_probs=509.1
Q ss_pred CCCCCcccCCCCCCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeecc
Q 004809 85 TTHSSQFLGLNPKSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFN 164 (729)
Q Consensus 85 ~~~s~~~~gl~~~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~ 164 (729)
|+++|+||||. ..+|.++.+|+||+|||||||||++||+|.++++++++.+|+|.|+.+.+|. ||+|++|+++|.
T Consensus 1 tt~s~~flGl~--~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~---~n~k~ig~~~~~ 75 (621)
T 3vta_A 1 TTRSWDFLGFP--LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYH 75 (621)
T ss_dssp CCSHHHHTTCC--TTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCC---CCSSEEEEEECC
T ss_pred CCCChhHcCCC--ccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcc---cCcceeeeeecc
Confidence 68999999995 4689999999999999999999999999999999999999999999998886 999999999998
Q ss_pred ccccccCCCCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHH
Q 004809 165 KGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQ 244 (729)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~ 244 (729)
.+.... +.+..+++|.+||||||||||||+.+.+.+.+|++.|.++||||+|+|++||+|++.||..+++++||++
T Consensus 76 ~~~~~~----~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~~~ 151 (621)
T 3vta_A 76 IGRPIS----PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDD 151 (621)
T ss_dssp CSSSCC----TTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHHHH
T ss_pred cCCccC----CCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHHHH
Confidence 765432 2344678999999999999999999988888899889999999999999999999999999999999999
Q ss_pred HHHcCCcEEEeecCCCC-CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeC
Q 004809 245 AIIDGVDVLSMSLGLDG-VDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLG 323 (729)
Q Consensus 245 A~~~gvdVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~ 323 (729)
|+++|+||||||||+.. ..++.+++++++++|+++||+||+||||+|+...++++.+||+++|++++.+|.|...+.++
T Consensus 152 a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~ 231 (621)
T 3vta_A 152 AIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIG 231 (621)
T ss_dssp HHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEET
T ss_pred HHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEec
Confidence 99999999999999765 34667889999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeeecCCCCCCceeeEEEcC-------------Cccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEE
Q 004809 324 NGNTVTGLSLYPGNSSLIDFPIVFMD-------------ECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGG 389 (729)
Q Consensus 324 ~g~~~~g~~~~~~~~~~~~~~lv~~~-------------~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~ 389 (729)
++..+.+.+++... ...+++++.. .|.+.+++ .+++|||++|.++. ..+..+.+.+|+.++
T Consensus 232 ~~~~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~---~~~~~~~~~~Ga~gv 306 (621)
T 3vta_A 232 NGQSFQGVSINTFD--NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF---GPHEFFKSLDGAAGV 306 (621)
T ss_dssp TSCEEEEBCCCCSC--CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCC---CHHHHHHHHTTCSEE
T ss_pred cCceeeeeecccCC--CcccccccccccccccccccccccccccccccccccceEEEEecCC---ChhHHhhhhcceeEE
Confidence 99999998876543 3456666543 38888888 89999999998764 456677888999999
Q ss_pred EEEecCCCceeecc-ccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcE
Q 004809 390 VFISDFDGLEFFLQ-SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDV 468 (729)
Q Consensus 390 i~~~~~~~~~~~~~-~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI 468 (729)
|++++..+ ..+ +.+|...++..++..++.|+.....+.+.+....+ +....++.++.||||||+....++|||||
T Consensus 307 i~~~~~~~---~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~-~~~~~~~~va~FSSrGP~~~~~~ilKPDI 382 (621)
T 3vta_A 307 LMTSNTRD---YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTT-ILNASAPVVVSFSSRGPNRATKDVIKPDI 382 (621)
T ss_dssp EEECSCCS---SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEE-EECTTCCCBCTTSCCCSCTTCTTSCSCCE
T ss_pred EEEecCCC---cccccccceEEECHHHHHHHHHHHhccCCcceEEecceE-eccCCCCceeeecCCCCCCCCCCeecccc
Confidence 99988432 234 88999999999999999999999998888755444 44567899999999999988888999999
Q ss_pred EecCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcc
Q 004809 469 MAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIK 548 (729)
Q Consensus 469 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~ 548 (729)
+|||++|+|+|+....... ..+...|..+||||||||||||+||||||+||+|+|++||++||+||++++..
T Consensus 383 ~APG~~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~----- 454 (621)
T 3vta_A 383 SGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNAR----- 454 (621)
T ss_dssp EEECSSEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTT-----
T ss_pred ccCCcceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCccccc-----
Confidence 9999999999986543322 23457899999999999999999999999999999999999999999988654
Q ss_pred cCCCCCCCCCCCCCCccccCccCcCCCCccccCChhhHHHHhhhcCCCccceeEeccccccccCC----CCCCCCCCcee
Q 004809 549 DIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQTITRSYSVNCST----SSLDLNYPSFI 624 (729)
Q Consensus 549 ~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~d~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~c~~----~~~~lN~ps~~ 624 (729)
..+..+|+||+|+|||.+|++||||||++.+||+.|||+++|+..+++.+++. ...|+. ...+||||||+
T Consensus 455 -----~~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lN~pS~~ 528 (621)
T 3vta_A 455 -----FNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGD-YSACTSGNTGRVWDLNYPSFG 528 (621)
T ss_dssp -----TCTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC------------------------------CGGGSCCSSEE
T ss_pred -----CCCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeecc-ccccCCCCcCcccccccccEE
Confidence 34567899999999999999999999999999999999999999999999987 667764 46799999999
Q ss_pred eeeccCCCceeEEEEEEEEecCCCCeEEEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCCCCCCeeEEEEEE
Q 004809 625 AFFNANESKSVQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLS 704 (729)
Q Consensus 625 ~~~~~~~~~~~~~~~rtvtnvg~~~~tY~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~l~ 704 (729)
+.+.... ..+++|+|||||||+..+||++++++|+|++|+|+|++|+|++.+|+++|+|||+... . +. |+||+|+
T Consensus 529 v~~~~~~-~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~~--~-~~-~~~g~l~ 603 (621)
T 3vta_A 529 LSVSPSQ-TFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSI--K-GF-VVSASLV 603 (621)
T ss_dssp EECCSSC-CEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEECC--C-SS-EEEEEEE
T ss_pred EEccCCC-ceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEecC--C-Cc-eEEEEEE
Confidence 9765333 4789999999999999999999999999999999999999998999999999998642 2 55 9999999
Q ss_pred EEEcCCceEEEEEEEEEe
Q 004809 705 WIETGGKHVVKSPIVVTS 722 (729)
Q Consensus 705 ~~~~~~~~~v~~P~~~~~ 722 (729)
|+ |++|.||+||+|+.
T Consensus 604 w~--d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 604 WS--DGVHYVRSPITITS 619 (621)
T ss_dssp EE--CSSCCCEEEEEEEC
T ss_pred EE--cCCEEEEeCEEEEE
Confidence 99 99999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-86 Score=794.40 Aligned_cols=539 Identities=22% Similarity=0.283 Sum_probs=430.5
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCcc----------CcccCCCeeeceeecccc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQF----------NSSLCNKKLIGARFFNKG 166 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f----------~~~~~n~kiig~~~~~~~ 166 (729)
++.+|.++++|+||+|||||||||++||+|.+ +..|++.|..+..| ...+||+|++++++|.++
T Consensus 6 ~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~ 79 (926)
T 1xf1_A 6 VKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRL------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKD 79 (926)
T ss_dssp CHHHHHHHCSCTTCEEEEEESCCTTCCCCCSC------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCC
T ss_pred cHHHHhccCCCCCcEEEEEecCCCCCCHhHcC------CCCCcccccchhhhcccccccCcccccccCcccceeeccccC
Confidence 35689999999999999999999999999985 34677777654332 134799999999998754
Q ss_pred ccccCCCCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC--CChHHHHHHHHH
Q 004809 167 LLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG--SFTSDIIAAIDQ 244 (729)
Q Consensus 167 ~~~~~~~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~il~ai~~ 244 (729)
. ...|..||||||||||||+.+.+.+. .+.+.||||+|+|++||+|+..+ +..+++++||++
T Consensus 80 ~------------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~ 143 (926)
T 1xf1_A 80 G------------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRD 143 (926)
T ss_dssp S------------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHH
T ss_pred C------------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHH
Confidence 2 12288999999999999997654332 23468999999999999999876 566789999999
Q ss_pred HHHcCCcEEEeecCCCC--CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCC-------------CCCcC--CCCCceEEE
Q 004809 245 AIIDGVDVLSMSLGLDG--VDLYEDPVAIATFAAIEKNIFVSTSAGNQGPF-------------IGTLH--NGIPWVMTV 307 (729)
Q Consensus 245 A~~~gvdVIn~SlG~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------------~~t~~--~~~p~vitV 307 (729)
|+++|+||||||||... ...+.+.+..++++|+++||+||+||||+|+. ..++. +.+||+|+|
T Consensus 144 Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitV 223 (926)
T 1xf1_A 144 AINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTV 223 (926)
T ss_dssp HHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEE
T ss_pred HHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEE
Confidence 99999999999999764 23456788889999999999999999999963 22333 348999999
Q ss_pred cccccCccccEEEEe-CCCcEEEeeeecCCC--CCCceeeEEEcCC-cccccccccCCceEEEEccCCCchhhHHHHHHh
Q 004809 308 AAGTMDRELGATLTL-GNGNTVTGLSLYPGN--SSLIDFPIVFMDE-CLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQN 383 (729)
Q Consensus 308 gAst~d~~~~~~~~l-~~g~~~~g~~~~~~~--~~~~~~~lv~~~~-c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~ 383 (729)
||++.++.+...+.+ +++....+.+++... .....+++++... |.+..+ .+++||||+|+|+.|.+.+|..++++
T Consensus 224 gA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~g~~~~~~-~~v~Gkivl~~rg~~~~~~k~~~~~~ 302 (926)
T 1xf1_A 224 ASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDF-KDVKGKIALIERGDIDFKDKIAKAKK 302 (926)
T ss_dssp EEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTTSCSTTTT-TTCTTSEEEEECCSSCHHHHHHHHHH
T ss_pred eccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCCCCCccch-hhcCCeEEEEECCCCCHHHHHHHHHh
Confidence 999999999988888 666555555554322 2467899999864 765555 79999999999999999999999999
Q ss_pred CCceEEEEEecCCCc-eeec-c-ccccEEEechhhHHHHHHHHhhcCCcEEEEEeccee--ecCCCCCceecccCCCCCC
Q 004809 384 ASVSGGVFISDFDGL-EFFL-Q-SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTE--LGTKPAPSVASYSSRGPSI 458 (729)
Q Consensus 384 ~Ga~g~i~~~~~~~~-~~~~-~-~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~a~FSS~GP~~ 458 (729)
+|++|+|++|+..+. .... . ..+|++.|+..+|..|.. .+.++|.+..+. +.....+.++.||||||+.
T Consensus 303 ~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~------~~~~ti~~~~~~~~~~~~~~~~~a~FSSrGp~~ 376 (926)
T 1xf1_A 303 AGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------NPQKTITFNATPKVLPTASGTKLSRFSSWGLTA 376 (926)
T ss_dssp TTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH------CSSCEEEECSSCEEEECSSCSBCCTTSCCCBCT
T ss_pred CCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh------CCceEEEecccceecccCCcceeccccCCCCCC
Confidence 999999999984332 2222 2 889999999999988763 345566666554 5566788999999999997
Q ss_pred CCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHH----hhCCCCCHHH----HH
Q 004809 459 SCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLR----GAHPEWSPAA----IR 530 (729)
Q Consensus 459 ~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~----q~~P~~sp~~----Ik 530 (729)
+. +|||||+|||++|+++++. +.|..+||||||||||||+||||+ +.||+|+|+| ||
T Consensus 377 ~~--~lKPDI~APG~~I~sa~~~-------------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Ik 441 (926)
T 1xf1_A 377 DG--NIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAK 441 (926)
T ss_dssp TS--CBSCCEEEECCCEEESSSC-------------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHH
T ss_pred CC--ccCceEECCCCCEEeeccC-------------CcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 64 5999999999999999984 479999999999999999999995 5699999997 99
Q ss_pred HHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCCCCccccCChhhHHHHhhhcCCCccceeEeccccccc
Q 004809 531 SAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLTMKRIQTITRSYSVN 610 (729)
Q Consensus 531 ~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~d~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~ 610 (729)
++||+||+++...+. ...+++++||+|+||+.+|++|.+ |||..+++..+
T Consensus 442 s~L~~TA~~~~~~~~--------~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~~----------- 491 (926)
T 1xf1_A 442 KVLMSSATALYDEDE--------KAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSSK----------- 491 (926)
T ss_dssp HHHHHHSBCCEEGGG--------TEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCSC-----------
T ss_pred HHHHhcCCCcccCCC--------CccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcce-----------
Confidence 999999998754210 234578899999999999999854 67877654322
Q ss_pred cCCCCCCCCCCceeeeeccCCCceeEEEEEEEEecCCC--CeEEEEEEEe--CCCcEEEEecCeEEEccC-------CeE
Q 004809 611 CSTSSLDLNYPSFIAFFNANESKSVQEFQRTVTNVGEG--VSTYTASVTP--LKGFNFSVDPDKLTFKGK-------YAK 679 (729)
Q Consensus 611 c~~~~~~lN~ps~~~~~~~~~~~~~~~~~rtvtnvg~~--~~tY~~~v~~--p~g~~v~v~p~~l~~~~~-------~~~ 679 (729)
|.+... ..+++++|||||+|+. ..+|++++.. |.+..++|.|..|.|..+ ||+
T Consensus 492 ------------i~l~~~----~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~ 555 (926)
T 1xf1_A 492 ------------VHLNNV----SDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSS 555 (926)
T ss_dssp ------------EEEEEE----CSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEE
T ss_pred ------------eecccc----CccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCE
Confidence 222211 1468899999999985 4678888775 789999999988877654 999
Q ss_pred EEEEEEEEecC-------CCCCCCeeEEEEEEEEEcCCceE-EEEEEEEEecCcC
Q 004809 680 QSYKLRIEGPN-------QMDEETVVAFCYLSWIETGGKHV-VKSPIVVTSLGTE 726 (729)
Q Consensus 680 ~~~~vt~~~~~-------~~~~~~~~~~G~l~~~~~~~~~~-v~~P~~~~~~~~~ 726 (729)
++|+|||+.+. ...++. |+||+|+|++.++.|. ||+||+++.+++.
T Consensus 556 ~~~~vt~~~~~~~~~~~~~~~~~~-~~~G~i~~~~~~~~~~~v~~P~~~~~g~~~ 609 (926)
T 1xf1_A 556 KQVTVPIDASRFSKDLLAQMKNGY-FLEGFVRFKQDPTKEELMSIPYIGFRGDFG 609 (926)
T ss_dssp EEEEEEEECHHHHHHHHHHSTTCE-EEEEEEEEESSTTSCCCEEEEEEEEESCGG
T ss_pred EEEEEEEEcCccchhhcccccCCc-EEEEEEEEEeCCCCCCEEEeeeEEEecCcc
Confidence 99999999751 122244 8999999995566664 9999999999875
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-60 Score=537.44 Aligned_cols=340 Identities=32% Similarity=0.456 Sum_probs=275.8
Q ss_pred CCceEEEecceeeEEEEEeCHHHHHHh-----------hcCCCeEEEEcCCccCCCCCCC--CcccCCCCCCCCCcCCCC
Q 004809 40 SSKLLYTYSHVLNGFSASLTPAELEAL-----------KSSPGYISSIRDLPVKPHTTHS--SQFLGLNPKSGAWPVSKF 106 (729)
Q Consensus 40 ~~~~~~~y~~~~ng~s~~l~~~~~~~L-----------~~~p~V~~V~~~~~~~~~~~~s--~~~~gl~~~~~~w~~~~~ 106 (729)
..+++|+|+ .||||+++++.+++++| +++|+|++|+++..+++..... ...+...+...+|..+++
T Consensus 59 g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (539)
T 3afg_A 59 GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYD 137 (539)
T ss_dssp TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBCSCCBCCSCC
T ss_pred CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCcHhHHhcCCC
Confidence 468999997 79999999999999999 8999999999999887753321 111222234679999999
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCC
Q 004809 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANG 186 (729)
Q Consensus 107 G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~g 186 (729)
|+||+|||||||||++||+|.++ +++.++|..+. ..+.|..|
T Consensus 138 G~gv~VaViDtGid~~Hpdl~~~---------------------------i~~~~d~~~~~-----------~~~~D~~g 179 (539)
T 3afg_A 138 GSGITIGIIDTGIDASHPDLQGK---------------------------VIGWVDFVNGK-----------TTPYDDNG 179 (539)
T ss_dssp CTTCEEEEEESBCCTTSGGGTTT---------------------------EEEEEETTTCC-----------SSCCBSSS
T ss_pred CCCcEEEEEecCCCCCChHHhCC---------------------------EeeeEECCCCC-----------CCCCCCCC
Confidence 99999999999999999999753 55556665431 24678899
Q ss_pred ChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc----CCcEEEeecCCCC
Q 004809 187 HGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID----GVDVLSMSLGLDG 261 (729)
Q Consensus 187 HGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~----gvdVIn~SlG~~~ 261 (729)
|||||||||||+.... .|.+.||||+|+|+++|+|+..| ++.+++++||+||+++ |++|||||||...
T Consensus 180 HGThVAgiiag~~~~~-------~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~ 252 (539)
T 3afg_A 180 HGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQ 252 (539)
T ss_dssp HHHHHHHHHHCCCGGG-------TTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCS
T ss_pred CHHHHHHHHhCcCccC-------CCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCC
Confidence 9999999999974321 23358999999999999998877 7889999999999975 8999999999866
Q ss_pred CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC--CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCC
Q 004809 262 VDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG--TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSS 339 (729)
Q Consensus 262 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~ 339 (729)
.....+.+..++.+|.++|++||+||||+|+... ..++..+++|+|||++.
T Consensus 253 ~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~--------------------------- 305 (539)
T 3afg_A 253 SSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDK--------------------------- 305 (539)
T ss_dssp CCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECT---------------------------
T ss_pred CCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecC---------------------------
Confidence 5556788999999999999999999999997644 34677899999998531
Q ss_pred CceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHH
Q 004809 340 LIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDIL 419 (729)
Q Consensus 340 ~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 419 (729)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCcee
Q 004809 420 KDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNL 499 (729)
Q Consensus 420 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 499 (729)
...++.||||||+.+.+ +||||+|||++|+++++..... .+.....|..
T Consensus 306 -------------------------~~~~a~fSs~Gp~~~~~--~kpdi~APG~~I~s~~~~~~~~----~~~~~~~y~~ 354 (539)
T 3afg_A 306 -------------------------YDVITDFSSRGPTADNR--LKPEVVAPGNWIIAARASGTSM----GQPINDYYTA 354 (539)
T ss_dssp -------------------------TSCBCSSSCCCCCTTCB--CCCSEEEECSSEEEECCTTCCC----SEECSSSEEE
T ss_pred -------------------------CcccccccCCCCCCCCC--CcccEecCcCCEEeeccCCCCC----CCCCcccccc
Confidence 12578999999998755 9999999999999999753211 0111246999
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCCC
Q 004809 500 QSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDP 575 (729)
Q Consensus 500 ~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 575 (729)
++|||||||||||++|||+|+||+|+|++||++|++||+++...+ .+++.||+|+||+.+|++.
T Consensus 355 ~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~~------------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 355 APGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDE------------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGGG------------CSBTTTBTCBCCHHHHHTG
T ss_pred cCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC------------CCccCccCCccCHHHHhhh
Confidence 999999999999999999999999999999999999999774311 2456899999999999984
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-55 Score=497.27 Aligned_cols=333 Identities=23% Similarity=0.274 Sum_probs=263.5
Q ss_pred CCceEEEecceeeEEEEEeCHHHHHHhhc-CCCeEEEEcCCccCCCCCCCC----------cccCCCC---CCCCCcCCC
Q 004809 40 SSKLLYTYSHVLNGFSASLTPAELEALKS-SPGYISSIRDLPVKPHTTHSS----------QFLGLNP---KSGAWPVSK 105 (729)
Q Consensus 40 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~-~p~V~~V~~~~~~~~~~~~s~----------~~~gl~~---~~~~w~~~~ 105 (729)
..+++++|. .|++|+++++++++++|++ +|+|++|++++.++++..... ..|++.. ...+|..++
T Consensus 65 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~ 143 (471)
T 3t41_A 65 SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLP 143 (471)
T ss_dssp TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCC
T ss_pred CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhccC
Confidence 567888996 5999999999999999999 999999999998887644321 1233332 235899999
Q ss_pred CCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCC
Q 004809 106 FGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDAN 185 (729)
Q Consensus 106 ~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~ 185 (729)
+|+||+|||||||||++||+|.++- |.+. ..++....|... ......+...+.|..
T Consensus 144 ~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~-------------~~~~~~~~~~~~----~~~~~~~~~~~~d~~ 199 (471)
T 3t41_A 144 KHANTKIAIIDTGVMKNHDDLKNNF-------STDS-------------KNLVPLNGFRGT----EPEETGDVHDVNDRK 199 (471)
T ss_dssp SSCCCCEEEEESCCCTTCTTTTTTB-------CTTC-------------EECCCTTCGGGC----CTTCCCCTTCCCCSS
T ss_pred CCCCcEEEEEeCCCCCCChhHhcCc-------ccCC-------------cccccCCCccCC----CcccCCCCCCCcCCC
Confidence 9999999999999999999998741 1110 011111111111 011112223577899
Q ss_pred CChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEEeecCCCCC-C-
Q 004809 186 GHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMSLGLDGV-D- 263 (729)
Q Consensus 186 gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn~SlG~~~~-~- 263 (729)
||||||||||||+.. +.||||+|+|+.+|+++...+..+++++||++|+++|++|||||||.... .
T Consensus 200 gHGT~vAgiiaa~g~------------~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~ 267 (471)
T 3t41_A 200 GHGTMVSGQTSANGK------------LIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDK 267 (471)
T ss_dssp SHHHHHHHHHHCBSS------------SBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECT
T ss_pred CccchhhheeecCCc------------eeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCcc
Confidence 999999999998631 47999999999999998866899999999999999999999999997321 0
Q ss_pred -----------CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC------------------CcCCCCCceEEEcccccCc
Q 004809 264 -----------LYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG------------------TLHNGIPWVMTVAAGTMDR 314 (729)
Q Consensus 264 -----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~------------------t~~~~~p~vitVgAst~d~ 314 (729)
...+.+..++..+.++|++||+||||+|.... ..++..+++|+|||++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~-- 345 (471)
T 3t41_A 268 NDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQ-- 345 (471)
T ss_dssp TCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECT--
T ss_pred ccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeCC--
Confidence 12356777888889999999999999997643 25678899999998542
Q ss_pred cccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec
Q 004809 315 ELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 315 ~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCC
Q 004809 395 FDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDS 474 (729)
Q Consensus 395 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~ 474 (729)
.+.++.||++||+. |||+|||++
T Consensus 346 --------------------------------------------------~~~~a~fS~~G~~~-------~di~APG~~ 368 (471)
T 3t41_A 346 --------------------------------------------------KSNLSEFSNFGMNY-------TDIAAPGGS 368 (471)
T ss_dssp --------------------------------------------------TSSBCTTCCBCTTT-------CCEEEECCC
T ss_pred --------------------------------------------------CCCCCCccCCCCCC-------CeEEecCCC
Confidence 12578999999964 699999987
Q ss_pred ----------------------EEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHH
Q 004809 475 ----------------------ILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHP-EWSPAAIRS 531 (729)
Q Consensus 475 ----------------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P-~~sp~~Ik~ 531 (729)
|+++++. +.|..++|||||||||||++|||+|++| .|+|++||+
T Consensus 369 i~~~~~~g~~~~~~~~~~~~~~i~s~~~~-------------~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~ 435 (471)
T 3t41_A 369 FAYLNQFGVDKWMNEGYMHKENILTTANN-------------GRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIE 435 (471)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred cccccccccccccccccccCceeEecCCC-------------CCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 8888864 4799999999999999999999999999 899999999
Q ss_pred HHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCCC
Q 004809 532 AIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDP 575 (729)
Q Consensus 532 ~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 575 (729)
+|++||.+... .++..||+|+||+.+|++.
T Consensus 436 ~L~~tA~~~~~--------------~~~~~~G~G~vd~~~Al~~ 465 (471)
T 3t41_A 436 LLYQHGTSKNN--------------KPFSRYGHGELDVYKALNV 465 (471)
T ss_dssp HHHHHSBCCSC--------------CCHHHHTTCBBCHHHHTTT
T ss_pred HHHHhCCCCCC--------------CCcCccccChhCHHHHHHH
Confidence 99999997632 3556899999999999984
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-56 Score=492.13 Aligned_cols=321 Identities=26% Similarity=0.375 Sum_probs=262.1
Q ss_pred CCceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEcCCccCCCCCCC-----------CcccCCCC--CCCCCcCCCC
Q 004809 40 SSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPHTTHS-----------SQFLGLNP--KSGAWPVSKF 106 (729)
Q Consensus 40 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~~~s-----------~~~~gl~~--~~~~w~~~~~ 106 (729)
..+++++|. .|++|+++++++++++|+++|+|++|++++.++++.... ...|++.. .+.+|..+ +
T Consensus 23 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~ 100 (395)
T 2z2z_A 23 GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-D 100 (395)
T ss_dssp TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGGGGGTC-S
T ss_pred CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHHHHhhc-C
Confidence 568999998 499999999999999999999999999999887643211 11233332 35689988 9
Q ss_pred CCC--cEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCC
Q 004809 107 GKD--IIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDA 184 (729)
Q Consensus 107 G~g--vvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~ 184 (729)
|+| |+|||||||||++||+|.++ ++..++|..+... ....++.|.
T Consensus 101 G~g~~v~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~------~~~~~~~d~ 147 (395)
T 2z2z_A 101 GSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRGKVS------TKLRDCADQ 147 (395)
T ss_dssp SCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGGCCB------CCHHHHBCS
T ss_pred CCCCcEEEEEEcCCCCCCChhHhhc---------------------------cccCccccCCccc------CCCCCCCCC
Confidence 999 99999999999999999753 2333334332100 000124678
Q ss_pred CCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc---------------
Q 004809 185 NGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID--------------- 248 (729)
Q Consensus 185 ~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~--------------- 248 (729)
.||||||||||||.. +..| +.||||+|+|+.+|+++..| ++.+++++||+||+++
T Consensus 148 ~gHGT~vAgiia~~~----n~~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~ 218 (395)
T 2z2z_A 148 NGHGTHVIGTIAALN----NDIG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG 218 (395)
T ss_dssp SSHHHHHHHHHHCCC----SSSS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTT
T ss_pred CCCHHHHHHHHHeec----CCCc-----eEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCccccccccccccccc
Confidence 999999999999972 1122 37999999999999998877 7888999999999988
Q ss_pred -----CCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeC
Q 004809 249 -----GVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLG 323 (729)
Q Consensus 249 -----gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~ 323 (729)
+++|||||||... ....+..++.+|.++|++||+||||+|......++..|++|+|||++.
T Consensus 219 ~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----------- 284 (395)
T 2z2z_A 219 DPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS----------- 284 (395)
T ss_dssp CTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-----------
T ss_pred cccCCCCeEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecC-----------
Confidence 9999999999753 245677777888999999999999999877788889999999999542
Q ss_pred CCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecc
Q 004809 324 NGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQ 403 (729)
Q Consensus 324 ~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 403 (729)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCC
Q 004809 404 SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNL 483 (729)
Q Consensus 404 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~ 483 (729)
.+.++.||++|| +|+|||++|+++++.
T Consensus 285 -----------------------------------------~~~~a~fS~~G~----------~v~APG~~i~s~~~~-- 311 (395)
T 2z2z_A 285 -----------------------------------------NDNIASFSNRQP----------EVSAPGVDILSTYPD-- 311 (395)
T ss_dssp -----------------------------------------TSCBCTTSCSSC----------SEEEECSSEEEEETT--
T ss_pred -----------------------------------------CCCCCcccCCCC----------CEEeCCCCeeeecCC--
Confidence 135789999997 679999999999874
Q ss_pred CccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCC-------------CCCHHHHHHHHHhccccCCCCCCCcccC
Q 004809 484 AVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHP-------------EWSPAAIRSAIMTTSDSTDNTNSDIKDI 550 (729)
Q Consensus 484 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P-------------~~sp~~Ik~~L~~TA~~~~~~~~~~~~~ 550 (729)
+.|..++|||||||||||++|||+|++| .|++.+||++|++||+++...
T Consensus 312 -----------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~------- 373 (395)
T 2z2z_A 312 -----------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT------- 373 (395)
T ss_dssp -----------TEEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS-------
T ss_pred -----------CceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCC-------
Confidence 4799999999999999999999999999 999999999999999987432
Q ss_pred CCCCCCCCCCCCCccccCccCcCCC
Q 004809 551 GDDNKPATPIAMGAGHINPDKALDP 575 (729)
Q Consensus 551 ~~~~~~~~~~~~G~G~vn~~~Al~~ 575 (729)
..+..||+|+||+.+|++.
T Consensus 374 ------g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 374 ------GWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp ------SSBTTTBTCBCCHHHHHHH
T ss_pred ------CCCCCccCceeCHHHHHHH
Confidence 2457899999999999863
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-55 Score=489.85 Aligned_cols=366 Identities=25% Similarity=0.331 Sum_probs=270.9
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
.+.+|..+ |+||+|+|||||||++||+|.++ .|.+ +++... .
T Consensus 13 ~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-------~~~~--------------------~~~~~~---------~ 54 (441)
T 1y9z_A 13 ATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-------NVTG--------------------TNNSGT---------G 54 (441)
T ss_dssp CSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS-------EEEE--------------------CCCTTS---------C
T ss_pred hhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC-------cccC--------------------cccCCC---------C
Confidence 35688865 77999999999999999999864 1111 111100 0
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCC--EEEEEEeecCCC-CChHHHHHHHHHHHHc-CCcE
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLA--RVAMYKALWNEG-SFTSDIIAAIDQAIID-GVDV 252 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~g-~~~~~il~ai~~A~~~-gvdV 252 (729)
+...+.|..||||||||||+|... ..| +.||||+| +|+.+|+++..+ ++.+++++||+||+++ |++|
T Consensus 55 ~~~~~~d~~gHGT~vAgiia~~~~----~~g-----~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~V 125 (441)
T 1y9z_A 55 NWYQPGNNNAHGTHVAGTIAAIAN----NEG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANV 125 (441)
T ss_dssp CTTCCCSSCCHHHHHHHHHHCCCS----SSB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSE
T ss_pred CCCCCCCCCCcHHHHHHHHhcccC----CCC-----ceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcE
Confidence 112467889999999999999742 123 38999995 999999999877 8888999999999999 9999
Q ss_pred EEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccE--------------
Q 004809 253 LSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGA-------------- 318 (729)
Q Consensus 253 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~-------------- 318 (729)
||||||.... ...+..++.+|.++|++||+||||+|......++..+++|+|||++.+.....
T Consensus 126 in~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG 202 (441)
T 1y9z_A 126 VTMSLGGSGS---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPG 202 (441)
T ss_dssp EEECCCBSCC---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEEC
T ss_pred EEeCCCCCCC---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEecc
Confidence 9999997532 34566777889999999999999999887788889999999999987643211
Q ss_pred -----EEEeCCCc----EEEeeeecCCCC-C-Cceee--EEE------------cCCcccc--ccc-ccCCceEEEEccC
Q 004809 319 -----TLTLGNGN----TVTGLSLYPGNS-S-LIDFP--IVF------------MDECLNL--AEL-KKVGQKIVVCQDK 370 (729)
Q Consensus 319 -----~~~l~~g~----~~~g~~~~~~~~-~-~~~~~--lv~------------~~~c~~~--~~~-~~~~gkiv~~~~g 370 (729)
....+++. ++.|.+++.... + ...++ +.| ...|... .++ .+++|||++|+|+
T Consensus 203 ~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg 282 (441)
T 1y9z_A 203 EAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERV 282 (441)
T ss_dssp SSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECC
T ss_pred CCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEecc
Confidence 11112221 233333332111 0 00000 001 1237654 445 8899999999998
Q ss_pred CC-----chhhHHHHHHhCCceEEEEEecCC--Cc--eee---cc-ccccEEEechhhHHHHHHHHhhcCCcEEEEEecc
Q 004809 371 ND-----SLSNQVDNIQNASVSGGVFISDFD--GL--EFF---LQ-SSFPAVFMNSKTGDILKDYIKIENNATATIQFQK 437 (729)
Q Consensus 371 ~~-----~~~~~~~~~~~~Ga~g~i~~~~~~--~~--~~~---~~-~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 437 (729)
.+ .+.+|..+++++|+.|+|++++.. +. ... .. +.+|.+.|+..+|+.|++|+... .
T Consensus 283 ~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~------ 352 (441)
T 1y9z_A 283 GNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----T------ 352 (441)
T ss_dssp SCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----E------
T ss_pred ccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----c------
Confidence 76 788999999999999999999832 21 111 12 78999999999999999886321 0
Q ss_pred eeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHH
Q 004809 438 TELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALL 517 (729)
Q Consensus 438 ~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl 517 (729)
.+ +... ...|..++|||||||||||++|||
T Consensus 353 -----------------------------t~--------~~~~-------------~~~y~~~sGTSmAaP~VAG~aALl 382 (441)
T 1y9z_A 353 -----------------------------TV--------SNQG-------------NQDYEYYNGTSMATPHVSGVATLV 382 (441)
T ss_dssp -----------------------------EE--------EEEE-------------EESEEEECSHHHHHHHHHHHHHHH
T ss_pred -----------------------------cc--------cccc-------------CCCceeecccccCCcccchHHHHH
Confidence 00 0111 257999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCCCCccccCChhhHHHHhhhcCCC
Q 004809 518 RGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCALNLT 596 (729)
Q Consensus 518 ~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~d~~~~dy~~~lc~~~~~ 596 (729)
+|+||+|+|++||++||+||++++..+ .+.+||+|+||+.+|+ ||+.|||++++.
T Consensus 383 ~~~~p~~sp~~ik~~L~~TA~~~~~~g-------------~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~ 437 (441)
T 1y9z_A 383 WSYHPECSASQVRAALNATADDLSVAG-------------RDNQTGYGMINAVAAK-----------AYLDESCTGPTD 437 (441)
T ss_dssp HHHCTTSCHHHHHHHHHHHSBCCSSSS-------------CBTTTBTCBCCHHHHH-----------HHHHHCTTCC--
T ss_pred HHHCCCCCHHHHHHHHHhhchhhccCC-------------CcccccccccCHHHHH-----------HHHHhhhcCCCC
Confidence 999999999999999999999875432 3568999999999996 499999998763
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-52 Score=479.75 Aligned_cols=350 Identities=25% Similarity=0.274 Sum_probs=259.5
Q ss_pred CCceEEEecceeeEEEEEeCH---HH-HHHhhc--CCCeEEEEcCCccCCCC----CC----------------------
Q 004809 40 SSKLLYTYSHVLNGFSASLTP---AE-LEALKS--SPGYISSIRDLPVKPHT----TH---------------------- 87 (729)
Q Consensus 40 ~~~~~~~y~~~~ng~s~~l~~---~~-~~~L~~--~p~V~~V~~~~~~~~~~----~~---------------------- 87 (729)
..++++++. .+++++++++. ++ +++|++ +|+|++|||+..+++.. ..
T Consensus 52 g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (671)
T 1r6v_A 52 NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE 130 (671)
T ss_dssp TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCccccccccccccccccccccccc
Confidence 356788887 68999999864 33 566764 89999999997765431 00
Q ss_pred -CCcccCCCC--CCCC-CcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeec
Q 004809 88 -SSQFLGLNP--KSGA-WPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFF 163 (729)
Q Consensus 88 -s~~~~gl~~--~~~~-w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~ 163 (729)
....|++.. ...+ |.. ++|+||+|||||||||++||+|.++- +. +...+
T Consensus 131 ~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTGVd~~HpdL~~~~-------~~-------------------g~~~~ 183 (671)
T 1r6v_A 131 LSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTGVDGTHPDLEGQV-------IA-------------------GYRPA 183 (671)
T ss_dssp TGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESCCBTTSGGGTTTB-------CC-------------------EEEGG
T ss_pred ccccCCchhccCCchhhhhc-cCCCCCEEEEEeCCCCCCCccccccE-------Ee-------------------ccccc
Confidence 001233322 2345 887 89999999999999999999998641 11 11111
Q ss_pred cccccccCCCCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecC------CC-CChH
Q 004809 164 NKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWN------EG-SFTS 236 (729)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~------~g-~~~~ 236 (729)
.+... + ...+..|.+||||||||||||.. +..| +.||||+|+|+.+|+++. .+ ...+
T Consensus 184 ~~~~~------p-~~~d~~d~~gHGThVAGiIAa~~----ng~g-----v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~ 247 (671)
T 1r6v_A 184 FDEEL------P-AGTDSSYGGSAGTHVAGTIAAKK----DGKG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDD 247 (671)
T ss_dssp GTEEE------C-TTCBCCTTCSHHHHHHHHHHCCC----SSSS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHH
T ss_pred CCCcC------C-CCCCCccCCCcchhhhhhhhccC----CCCc-----eEEECCCCEEEEEEeccCccccCCCCccCHH
Confidence 11100 0 00124467899999999999973 1123 379999999999999976 23 4456
Q ss_pred HHHHHHHHHHHcCCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEEcccccCcc
Q 004809 237 DIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI-GTLHNGIPWVMTVAAGTMDRE 315 (729)
Q Consensus 237 ~il~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~t~~~~~p~vitVgAst~d~~ 315 (729)
.+++||+||+++|++|||||||... +...+..++..|.++|++||+||||+|... ...++..|++|+|||++.+..
T Consensus 248 ~i~~ai~~A~~~gadVIN~SlG~~~---~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~ 324 (671)
T 1r6v_A 248 YVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG 324 (671)
T ss_dssp HHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC
Confidence 7899999999999999999999743 356778888899999999999999999764 566788899999999642210
Q ss_pred ccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecC
Q 004809 316 LGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDF 395 (729)
Q Consensus 316 ~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~ 395 (729)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCE
Q 004809 396 DGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSI 475 (729)
Q Consensus 396 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I 475 (729)
...++.||++||.. ||+|||++|
T Consensus 325 -------------------------------------------------~~~~a~fSn~G~~v--------dv~APG~~I 347 (671)
T 1r6v_A 325 -------------------------------------------------TFRVAGFSSRSDGV--------SVGAPGVTI 347 (671)
T ss_dssp -------------------------------------------------EEEECSSSCCCTTE--------EEEEECSSE
T ss_pred -------------------------------------------------ceeeccccCCCCCe--------eEEecCCCE
Confidence 01478999999864 999999999
Q ss_pred EeecCCCCCcc-----ccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccC
Q 004809 476 LAAWPSNLAVS-----QTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDI 550 (729)
Q Consensus 476 ~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~ 550 (729)
+++++...... ........+.|..++|||||||||||++|||+|++|+|+|.+||++|++||+++...
T Consensus 348 ~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~------- 420 (671)
T 1r6v_A 348 LSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN------- 420 (671)
T ss_dssp EEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-------
T ss_pred EeecCCCCccccccccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCC-------
Confidence 99987532110 000111235799999999999999999999999999999999999999999987432
Q ss_pred CCCCCCCCCCCCCccccCccCcCCCCccccCChhhH
Q 004809 551 GDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDY 586 (729)
Q Consensus 551 ~~~~~~~~~~~~G~G~vn~~~Al~~glv~d~~~~dy 586 (729)
..+..||+|+||+.+|++..|..+....||
T Consensus 421 ------g~d~~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 421 ------GWDHDTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp ------SCBTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred ------CCCCCcccceeCHHHHhhhhcCCCCCccce
Confidence 245689999999999999877766554443
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-54 Score=495.19 Aligned_cols=302 Identities=22% Similarity=0.220 Sum_probs=41.2
Q ss_pred CCceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEcCCccCCCCCCCCcccCCCCC------CCCCcCCCCCCCcEEE
Q 004809 40 SSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPHTTHSSQFLGLNPK------SGAWPVSKFGKDIIIG 113 (729)
Q Consensus 40 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~~~s~~~~gl~~~------~~~w~~~~~G~gvvVg 113 (729)
..++++.|++.|+||+++++++++++|+++|+|++|+|++.++.+. .. |++.++ ...|..+.+|+||+|+
T Consensus 108 ~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~~-~p---WgL~~i~~~~~~~~~w~~~~~G~GV~Va 183 (692)
T 2p4e_P 108 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQS-IP---WNLERITPPRYRADEYQPPDGGSLVEVY 183 (692)
T ss_dssp CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC-----------------------------------
T ss_pred ccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccCC-CC---cchhhcccccccccccccCCCCCCcEEE
Confidence 4689999999999999999999999999999999999999776522 22 444432 2368888999999999
Q ss_pred EEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCCCCCCChhHHHH
Q 004809 114 VVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSS 193 (729)
Q Consensus 114 VIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAg 193 (729)
|||||||++||+|.++-. |. +|. .+.+. ++ ......+.|.+||||||||
T Consensus 184 VIDTGId~~HpdL~gr~~------~~-------~~~------------~~~d~----dg--~~~~~~~~D~~GHGTHVAG 232 (692)
T 2p4e_P 184 LLDTSIQSDHREIEGRVM------VT-------DFE------------NVPEE----DG--TRFHRQASKCDSHGTHLAG 232 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEcCCCCCCChhhcCceE------ec-------ccc------------cccCC----CC--CcccCCCCCCCCcHHHhhh
Confidence 999999999999987510 10 000 00000 00 0001246789999999999
Q ss_pred HhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc------CCcEEEeecCCCCCCCCC
Q 004809 194 TAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID------GVDVLSMSLGLDGVDLYE 266 (729)
Q Consensus 194 iaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~------gvdVIn~SlG~~~~~~~~ 266 (729)
||+|+. .||||+|+|+++|+++..| ++.+++++||+|++++ |++|||||||+.. .
T Consensus 233 iIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~----s 294 (692)
T 2p4e_P 233 VVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY----S 294 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC----c
Confidence 999872 6999999999999998876 7888999999999986 8999999999743 3
Q ss_pred cHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeE
Q 004809 267 DPVAIATFAAIEKNIFVSTSAGNQGPFIG-TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPI 345 (729)
Q Consensus 267 ~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~l 345 (729)
..+..++..|.++||+||+||||+|.... ..++..|++|+|||++.+...
T Consensus 295 ~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~----------------------------- 345 (692)
T 2p4e_P 295 RVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP----------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc-----------------------------
Confidence 45556667888999999999999997653 346788999999996532210
Q ss_pred EEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhh
Q 004809 346 VFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKI 425 (729)
Q Consensus 346 v~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 425 (729)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCceeeccccc
Q 004809 426 ENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSM 505 (729)
Q Consensus 426 ~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSM 505 (729)
...-+.||++|| ||||+|||++|+++++.. ...|..++||||
T Consensus 346 -------------------a~~ss~fSn~G~--------~vDI~APG~~I~St~~~~-----------~~~y~~~SGTSm 387 (692)
T 2p4e_P 346 -------------------VTLGTLGTNFGR--------CVDLFAPGEDIIGASSDC-----------STCFVSQSGTSQ 387 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------cccccccCCCCC--------ceeEEecCCcEEeeccCC-----------CCceEeccchHH
Confidence 000123899997 579999999999998753 247899999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 004809 506 ACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTD 541 (729)
Q Consensus 506 AaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~ 541 (729)
|||||||++|||+|++|+|+|++||++|++||.+..
T Consensus 388 AAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~~ 423 (692)
T 2p4e_P 388 AAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDV 423 (692)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999998653
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-53 Score=461.24 Aligned_cols=301 Identities=21% Similarity=0.208 Sum_probs=199.4
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeee-----ceeeccccccccCC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLI-----GARFFNKGLLAKNP 172 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kii-----g~~~~~~~~~~~~~ 172 (729)
..+|.++..|++|+|||||||||++||+|++....+....|+..++........ .+..+. +..........
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--- 96 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYA-AFQSIRDQGLKGKEKEEALEAV--- 96 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHH-HHHHHHHHTCCSHHHHHHHHHH---
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCccccc-ccccccCccccccccccccccc---
Confidence 458999999999999999999999999999877667777787766542211000 000000 00000000000
Q ss_pred CCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC------CChHHHHHHHHHHH
Q 004809 173 TITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG------SFTSDIIAAIDQAI 246 (729)
Q Consensus 173 ~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g------~~~~~il~ai~~A~ 246 (729)
..+..++.|.+||||||||||||+... | +.||||+|+|+.+|++.... +...++++||++|+
T Consensus 97 --~~~~~~~~D~~gHGThVAGiiag~~~~-----g-----~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~ 164 (357)
T 4h6x_A 97 --IPDTKDRIVLNDHACHVTSTIVGQEHS-----P-----VFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLAL 164 (357)
T ss_dssp --CTTTHHHHHHHHHHHHHHHHHHCCTTS-----S-----CCCSCTTSEEEEEECTTC----------CHHHHHHHHHHH
T ss_pred --cCCCCCCcCCCCcHHHHHHHHhccCCC-----C-----ceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHH
Confidence 001123456789999999999997421 2 37999999999999975421 44567889999999
Q ss_pred HcCCcEEEeecCCCC-CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCC
Q 004809 247 IDGVDVLSMSLGLDG-VDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNG 325 (729)
Q Consensus 247 ~~gvdVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g 325 (729)
+.|++|||||||... .....+.+..++..+.++|++||+||||+|......++..|++|+|||++.
T Consensus 165 ~~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 231 (357)
T 4h6x_A 165 ELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV------------- 231 (357)
T ss_dssp HTTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT-------------
T ss_pred HcCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc-------------
Confidence 999999999999754 234567788888899999999999999999887788888999999998542
Q ss_pred cEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecccc
Q 004809 326 NTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSS 405 (729)
Q Consensus 326 ~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 405 (729)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCc
Q 004809 406 FPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAV 485 (729)
Q Consensus 406 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~ 485 (729)
.+.++.||+||+.. .||||+|||++|+++++.+
T Consensus 232 ---------------------------------------~~~~~~fSn~G~~~-----~~~di~APG~~i~s~~~~~--- 264 (357)
T 4h6x_A 232 ---------------------------------------DGTPCHFSNWGGNN-----TKEGILAPGEEILGAQPCT--- 264 (357)
T ss_dssp ---------------------------------------TSSBCTTCC---CT-----TTTEEEEECSSEEECCTTC---
T ss_pred ---------------------------------------CCcccccccCCCCC-----CccceeecCCCeEeccCCC---
Confidence 22578999999865 6899999999999998754
Q ss_pred cccCCCCCCCCceeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCC
Q 004809 486 SQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRG----AHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIA 561 (729)
Q Consensus 486 ~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~ 561 (729)
..|..++|||||||||||++|||++ ++|.|+++|||++|++||++++.. ....+.+
T Consensus 265 ---------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~-----------~~~~~~~ 324 (357)
T 4h6x_A 265 ---------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE-----------VVEEPER 324 (357)
T ss_dssp ---------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------------------------
T ss_pred ---------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC-----------CCCCccc
Confidence 5678899999999999999999995 467899999999999999987532 2234568
Q ss_pred CCccccCccCcCC
Q 004809 562 MGAGHINPDKALD 574 (729)
Q Consensus 562 ~G~G~vn~~~Al~ 574 (729)
||+|+||+.+|++
T Consensus 325 ~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 325 CLRGFVNIPGAMK 337 (357)
T ss_dssp CTTCBCCHHHHHH
T ss_pred ceeEEecHHHHHH
Confidence 9999999999986
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=424.98 Aligned_cols=264 Identities=33% Similarity=0.371 Sum_probs=212.9
Q ss_pred cCCCCC--CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccc
Q 004809 92 LGLNPK--SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLA 169 (729)
Q Consensus 92 ~gl~~~--~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~ 169 (729)
|++..+ ..+|+.+..|+||+|+|||||||++||+|.++ ++..++|.+..
T Consensus 13 w~l~~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~---------------------------~~~~~~~~~~~-- 63 (280)
T 1dbi_A 13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDND-- 63 (280)
T ss_dssp CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTTB--
T ss_pred CChhhcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC---------------------------cccceeccCCC--
Confidence 555443 45899988888999999999999999999753 33444444321
Q ss_pred cCCCCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc
Q 004809 170 KNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID 248 (729)
Q Consensus 170 ~~~~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~ 248 (729)
..+.|..+|||||||||+|...+. .| +.||||+|+|+.+|+++..+ ++.+++++||++|++.
T Consensus 64 ---------~~~~d~~gHGT~vAgiia~~~~~~---~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~ 126 (280)
T 1dbi_A 64 ---------YDPMDLNNHGTHVAGIAAAETNNA---TG-----IAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADS 126 (280)
T ss_dssp ---------SCCCCSSSHHHHHHHHHHCCCSSS---SS-----CCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHT
T ss_pred ---------CCCCCCCCcHHHHHHHHhCcCCCC---Cc-----ceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHC
Confidence 235788999999999999975332 22 37999999999999998776 7888999999999999
Q ss_pred CCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEE
Q 004809 249 GVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTV 328 (729)
Q Consensus 249 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~ 328 (729)
|++|||||||... ....+..++..+.++|++||+||||+|......++..+++|+|||++.
T Consensus 127 g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~---------------- 187 (280)
T 1dbi_A 127 GAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ---------------- 187 (280)
T ss_dssp TCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT----------------
T ss_pred CCCEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC----------------
Confidence 9999999999753 346677888889999999999999999877777888999999998542
Q ss_pred EeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccE
Q 004809 329 TGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPA 408 (729)
Q Consensus 329 ~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~ 408 (729)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCcccc
Q 004809 409 VFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQT 488 (729)
Q Consensus 409 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~ 488 (729)
.+.++.||++||. |||+|||++|+++++.
T Consensus 188 ------------------------------------~~~~~~~S~~G~~--------~dv~ApG~~i~s~~~~------- 216 (280)
T 1dbi_A 188 ------------------------------------YDRLASFSNYGTW--------VDVVAPGVDIVSTITG------- 216 (280)
T ss_dssp ------------------------------------TSCBCTTBCCSTT--------CCEEEECSSEEEEETT-------
T ss_pred ------------------------------------CCCcCCCCCCCCC--------ceEEEecCCeEeecCC-------
Confidence 1256889999974 5999999999999874
Q ss_pred CCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccC
Q 004809 489 NSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHIN 568 (729)
Q Consensus 489 ~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn 568 (729)
+.|..++|||||||||||++|||++ |.+++.+||++|++||+++.. ....||+|+||
T Consensus 217 ------~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~---------------~~~~~G~G~vn 273 (280)
T 1dbi_A 217 ------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG---------------TGTYFKYGRIN 273 (280)
T ss_dssp ------TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT---------------BTTTBSSEECC
T ss_pred ------CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC---------------CCCcccCCEEC
Confidence 4799999999999999999999987 899999999999999998742 12479999999
Q ss_pred ccCcCC
Q 004809 569 PDKALD 574 (729)
Q Consensus 569 ~~~Al~ 574 (729)
+.+|++
T Consensus 274 ~~~A~~ 279 (280)
T 1dbi_A 274 SYNAVT 279 (280)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999976
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=424.71 Aligned_cols=256 Identities=31% Similarity=0.424 Sum_probs=214.1
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
+.+|..+++|+||+|+|||||||++||+|+. ...+.|..+.
T Consensus 14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~~---------- 54 (274)
T 1r0r_E 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNV-----------------------------VGGASFVAGE---------- 54 (274)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECSTTC----------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCCHhHcC-----------------------------CCCccccCCC----------
Confidence 4589999999999999999999999999941 1223333221
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEee
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMS 256 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~S 256 (729)
..+.|..||||||||||+|.. +..| +.||||+|+|+.+|++...+ +..+++++||+||++.+++|||||
T Consensus 55 -~~~~d~~gHGT~vAgiia~~~----~~~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S 124 (274)
T 1r0r_E 55 -AYNTDGNGHGTHVAGTVAALD----NTTG-----VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMS 124 (274)
T ss_dssp -CTTCCSSSHHHHHHHHHHCCS----SSSB-----CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEEC
T ss_pred -CCCCCCCCCHHHHHHHHHccC----CCCc-----eEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeC
Confidence 124678899999999999972 1122 37999999999999998776 778899999999999999999999
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC----CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeee
Q 004809 257 LGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI----GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLS 332 (729)
Q Consensus 257 lG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~ 332 (729)
||... ....+..++.++.++|++||+||||+|... ...+...+++|+||+++.
T Consensus 125 ~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~-------------------- 181 (274)
T 1r0r_E 125 LGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS-------------------- 181 (274)
T ss_dssp EEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT--------------------
T ss_pred CCCCC---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC--------------------
Confidence 99754 246677888889999999999999999752 345677899999998532
Q ss_pred ecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEec
Q 004809 333 LYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMN 412 (729)
Q Consensus 333 ~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 412 (729)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCC
Q 004809 413 SKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKL 492 (729)
Q Consensus 413 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~ 492 (729)
.+.++.||++|| ||||+|||++|+++++.
T Consensus 182 --------------------------------~~~~~~~S~~G~--------~~di~APG~~i~s~~~~----------- 210 (274)
T 1r0r_E 182 --------------------------------NSNRASFSSVGA--------ELEVMAPGAGVYSTYPT----------- 210 (274)
T ss_dssp --------------------------------TSCBCTTCCCST--------TEEEEEECSSEEEEETT-----------
T ss_pred --------------------------------CCCcCccCCCCC--------CceEEeCCCCeEeecCC-----------
Confidence 125688999998 46999999999999874
Q ss_pred CCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCc
Q 004809 493 SFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKA 572 (729)
Q Consensus 493 ~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 572 (729)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++. .+..||+|+||+.+|
T Consensus 211 --~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g----------------~~~~~G~G~~~~~~A 272 (274)
T 1r0r_E 211 --NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG----------------SSFYYGKGLINVEAA 272 (274)
T ss_dssp --TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS----------------CHHHHTTCBCCHHHH
T ss_pred --CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC----------------CCCCcccCccCHHHH
Confidence 47999999999999999999999999999999999999999999763 345899999999999
Q ss_pred CC
Q 004809 573 LD 574 (729)
Q Consensus 573 l~ 574 (729)
++
T Consensus 273 ~~ 274 (274)
T 1r0r_E 273 AQ 274 (274)
T ss_dssp TC
T ss_pred hC
Confidence 85
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-50 Score=420.50 Aligned_cols=255 Identities=31% Similarity=0.434 Sum_probs=215.2
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
+.+|..+++|+||+|+|||||| .+||+|+. ...++|..+.
T Consensus 14 ~~a~~~g~~G~gv~VaViDtGi-~~h~~l~~-----------------------------~~~~~~~~~~---------- 53 (269)
T 1gci_A 14 PAAHNRGLTGSGVKVAVLDTGI-STHPDLNI-----------------------------RGGASFVPGE---------- 53 (269)
T ss_dssp HHHHHTTCSCTTCEEEEEESCC-CCCTTCCE-----------------------------EEEEECSTTC----------
T ss_pred HHHHhcCCCCCCCEEEEECCCC-CCCHhhcc-----------------------------cCCcccCCCC----------
Confidence 4589999999999999999999 89999841 1223333210
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEee
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMS 256 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~S 256 (729)
..+.|..||||||||||+|.. +..| +.||||+|+|+.+|+++..+ +..+++++||+||++.|++|||||
T Consensus 54 -~~~~d~~gHGT~vAgiia~~~----~~~~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S 123 (269)
T 1gci_A 54 -PSTQDGNGHGTHVAGTIAALN----NSIG-----VLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLS 123 (269)
T ss_dssp -CSCSCSSSHHHHHHHHHHCCC----SSSB-----CCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred -CCCCCCCCChHHHHHHHhcCc----CCCC-----cEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeC
Confidence 125678999999999999972 1122 37999999999999998776 778899999999999999999999
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCC
Q 004809 257 LGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPG 336 (729)
Q Consensus 257 lG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~ 336 (729)
||... ....+..++.++.++|++||+||||+|......+...+++|+|||++.
T Consensus 124 ~G~~~---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------ 176 (269)
T 1gci_A 124 LGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------------------ 176 (269)
T ss_dssp CCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT------------------------
T ss_pred CCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC------------------------
Confidence 99753 245677788889999999999999999887778888999999998542
Q ss_pred CCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhH
Q 004809 337 NSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTG 416 (729)
Q Consensus 337 ~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g 416 (729)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCC
Q 004809 417 DILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSN 496 (729)
Q Consensus 417 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 496 (729)
.+.++.||++||. |||+|||++|+++++. +.
T Consensus 177 ----------------------------~~~~~~~S~~G~~--------~di~APG~~i~s~~~~-------------~~ 207 (269)
T 1gci_A 177 ----------------------------NNNRASFSQYGAG--------LDIVAPGVNVQSTYPG-------------ST 207 (269)
T ss_dssp ----------------------------TSCBCTTCCCSTT--------EEEEEECSSEEEEETT-------------TE
T ss_pred ----------------------------CCCCCCCCCCCCC--------cceEecCCCeEeecCC-------------CC
Confidence 1256889999984 5999999999999874 47
Q ss_pred ceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCC
Q 004809 497 FNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574 (729)
Q Consensus 497 y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 574 (729)
|..++|||||||||||++|||+|++|+|++.+||++|++||+++. .++.||+|+||+.+|++
T Consensus 208 ~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g----------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 208 YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG----------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS----------------CHHHHTTCBCCHHHHTC
T ss_pred EEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC----------------CCCCcccCccCHHHHcC
Confidence 899999999999999999999999999999999999999999763 24579999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-50 Score=421.16 Aligned_cols=258 Identities=32% Similarity=0.437 Sum_probs=214.6
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|..+++|+||+|+|||||||++||+|+. ...+.|..+ +
T Consensus 14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~----------~ 54 (281)
T 1to2_E 14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-----------------------------AGGASMVPS----------E 54 (281)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECCTT----------C
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC-----------------------------cCCccccCC----------C
Confidence 4589999999999999999999999999952 112222211 0
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEee
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMS 256 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~S 256 (729)
.....|..+|||||||||+|.. +..| +.||||+|+|+.+|++...+ +..++++++|+||+++|++|||||
T Consensus 55 ~~~~~d~~gHGT~vAgiia~~~----~~~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S 125 (281)
T 1to2_E 55 TNPFQDNNSHGTHVAGTVAALN----NSIG-----VLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMS 125 (281)
T ss_dssp CCTTCCSSSHHHHHHHHHHCCS----SSSS-----BCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCCCCCcHHHHHHHHhccC----CCCc-----ceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEEC
Confidence 0123678899999999999972 1122 37999999999999998776 778899999999999999999999
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC----CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeee
Q 004809 257 LGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI----GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLS 332 (729)
Q Consensus 257 lG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~ 332 (729)
||... ....+..++.++.++|++||+||||+|... ...+...|++|+|||++.
T Consensus 126 ~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~-------------------- 182 (281)
T 1to2_E 126 LGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS-------------------- 182 (281)
T ss_dssp EEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT--------------------
T ss_pred CcCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC--------------------
Confidence 99753 246777888889999999999999999752 345677899999998531
Q ss_pred ecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEec
Q 004809 333 LYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMN 412 (729)
Q Consensus 333 ~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 412 (729)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCC
Q 004809 413 SKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKL 492 (729)
Q Consensus 413 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~ 492 (729)
.+.++.||++||. |||+|||++|+++++.
T Consensus 183 --------------------------------~~~~~~fS~~G~~--------~di~APG~~i~s~~~~----------- 211 (281)
T 1to2_E 183 --------------------------------SNQRASFSSVGPE--------LDVMAPGVSIQSTLPG----------- 211 (281)
T ss_dssp --------------------------------TSCBCTTCCCSTT--------CCEEEECSSEEEEETT-----------
T ss_pred --------------------------------CCCcCCcCCCCCC--------ceEEecCCCeEeecCC-----------
Confidence 1256889999984 5999999999999874
Q ss_pred CCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCc
Q 004809 493 SFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKA 572 (729)
Q Consensus 493 ~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 572 (729)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++. +++.||+|+||+.+|
T Consensus 212 --~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g----------------~~~~~G~G~v~~~~a 273 (281)
T 1to2_E 212 --NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG----------------DSFYYGKGLINVQAA 273 (281)
T ss_dssp --TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS----------------CHHHHTTCBCCHHHH
T ss_pred --CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC----------------CCCCcccceecHHHH
Confidence 47899999999999999999999999999999999999999999763 356899999999999
Q ss_pred CCC
Q 004809 573 LDP 575 (729)
Q Consensus 573 l~~ 575 (729)
+++
T Consensus 274 ~~~ 276 (281)
T 1to2_E 274 AQH 276 (281)
T ss_dssp TSS
T ss_pred hhh
Confidence 975
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=435.62 Aligned_cols=263 Identities=28% Similarity=0.359 Sum_probs=214.0
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|..+++|+||+|||||||||++||+|.++ +++.++|..++.. +
T Consensus 31 ~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~-------~ 76 (327)
T 2x8j_A 31 PAVWRASAKGAGQIIGVIDTGCQVDHPDLAER---------------------------IIGGVNLTTDYGG-------D 76 (327)
T ss_dssp HHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG---------------------------EEEEEECSSGGGG-------C
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc---------------------------ccCCccccCCCCC-------C
Confidence 55899999999999999999999999999753 4444555443211 1
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHH------cCC
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAII------DGV 250 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~------~gv 250 (729)
.....|..||||||||||+|+.. + .| +.||||+|+|+.+|+++..+ +..+++++||+||++ .++
T Consensus 77 ~~~~~d~~gHGT~VAgiia~~~~-~---~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~ 147 (327)
T 2x8j_A 77 ETNFSDNNGHGTHVAGTVAAAET-G---SG-----VVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQM 147 (327)
T ss_dssp TTCCCCSSSHHHHHHHHHHCCCC-S---SB-----CCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCC
T ss_pred CCCCCCCCCchHHHHHHHhccCC-C---CC-----cEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCc
Confidence 12356889999999999999731 1 12 38999999999999998776 778899999999999 899
Q ss_pred cEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-----CCcCCCCCceEEEcccccCccccEEEEeCCC
Q 004809 251 DVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI-----GTLHNGIPWVMTVAAGTMDRELGATLTLGNG 325 (729)
Q Consensus 251 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-----~t~~~~~p~vitVgAst~d~~~~~~~~l~~g 325 (729)
+|||||||... ....+..++..|.++|++||+||||+|... ...++..+++|+|||++.+
T Consensus 148 ~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~------------ 212 (327)
T 2x8j_A 148 RIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD------------ 212 (327)
T ss_dssp SEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT------------
T ss_pred eEEEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC------------
Confidence 99999999753 346677788889999999999999999652 4566778999999985421
Q ss_pred cEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecccc
Q 004809 326 NTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSS 405 (729)
Q Consensus 326 ~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 405 (729)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCc
Q 004809 406 FPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAV 485 (729)
Q Consensus 406 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~ 485 (729)
+.++.||++|| ||||+|||++|+++++.
T Consensus 213 ----------------------------------------~~~~~fS~~G~--------~~di~APG~~i~s~~~~---- 240 (327)
T 2x8j_A 213 ----------------------------------------LRLSDFTNTNE--------EIDIVAPGVGIKSTYLD---- 240 (327)
T ss_dssp ----------------------------------------CCBSCC---CC--------CCSEEEECSSEEEECST----
T ss_pred ----------------------------------------CCCCCccCCCC--------CceEecCcCceEeecCC----
Confidence 25688999998 56999999999999874
Q ss_pred cccCCCCCCCCceeeccccchhHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCC
Q 004809 486 SQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGA-----HPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPI 560 (729)
Q Consensus 486 ~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~-----~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~ 560 (729)
+.|..++|||||||||||++|||+|+ +|.|++.+||++|++||+++.. ++.
T Consensus 241 ---------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~---------------~~~ 296 (327)
T 2x8j_A 241 ---------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF---------------TAQ 296 (327)
T ss_dssp ---------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS---------------CHH
T ss_pred ---------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC---------------CCC
Confidence 47999999999999999999999999 9999999999999999997631 356
Q ss_pred CCCccccCccCcCC
Q 004809 561 AMGAGHINPDKALD 574 (729)
Q Consensus 561 ~~G~G~vn~~~Al~ 574 (729)
.||+|+||+.+|++
T Consensus 297 ~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 297 AEGNGFLTLDLVER 310 (327)
T ss_dssp HHTTCEECTTHHHH
T ss_pred ceeeeEECHHHHHH
Confidence 89999999999987
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=426.53 Aligned_cols=264 Identities=23% Similarity=0.277 Sum_probs=209.5
Q ss_pred CCCC-CCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCC
Q 004809 104 SKFG-KDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPR 182 (729)
Q Consensus 104 ~~~G-~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 182 (729)
.++| +||+|||||||||++||+|.++. +..+.+... .......
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~---------------------------~~~~~~~~~---------~~~~~d~ 46 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGAD---------------------------LTVLPTLAP---------TAARSDG 46 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCE---------------------------EEECCCSSC---------CCCCTTC
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCe---------------------------eecCcCCCC---------CCCCCCC
Confidence 3578 79999999999999999998641 111111111 0001223
Q ss_pred CCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC--CChHHHHHHHHHHHHcCCcEEEeecCCC
Q 004809 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG--SFTSDIIAAIDQAIIDGVDVLSMSLGLD 260 (729)
Q Consensus 183 D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~il~ai~~A~~~gvdVIn~SlG~~ 260 (729)
|.+||||||||||+|+... | +.||||+|+|+.+|++.+.+ .+..++++||+||++.+++|||||||..
T Consensus 47 ~~~gHGT~VAGiiag~~~~-----~-----~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~ 116 (282)
T 3zxy_A 47 FMSAHGTHVASIIFGQPET-----S-----VPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGEL 116 (282)
T ss_dssp HHHHHHHHHHHHHHCCTTS-----S-----SCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEE
T ss_pred CCCCcccceeehhhccCCc-----e-----eeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccc
Confidence 4568999999999997422 2 37999999999999986543 6778899999999999999999999975
Q ss_pred CC-CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCCCCC
Q 004809 261 GV-DLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSS 339 (729)
Q Consensus 261 ~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~ 339 (729)
.. ......+..++..+.++|+++|+||||+|......+...+++|+|||++.
T Consensus 117 ~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------- 169 (282)
T 3zxy_A 117 TDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD--------------------------- 169 (282)
T ss_dssp ESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT---------------------------
T ss_pred cccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC---------------------------
Confidence 32 23455677777889999999999999999888788888999999998542
Q ss_pred CceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHH
Q 004809 340 LIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDIL 419 (729)
Q Consensus 340 ~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 419 (729)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCCcee
Q 004809 420 KDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNL 499 (729)
Q Consensus 420 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 499 (729)
.+.++.||+||+.. .||||+|||++|+++++. +.|..
T Consensus 170 -------------------------~~~~~~~S~~~~~~-----~~~di~ApG~~i~s~~~~-------------~~~~~ 206 (282)
T 3zxy_A 170 -------------------------HGHPLDFSNWGSTY-----EQQGILAPGEDILGAKPG-------------GGTER 206 (282)
T ss_dssp -------------------------TSCBCSSSCCCHHH-----HHHEEEEECSSEEEECTT-------------SCEEE
T ss_pred -------------------------CCccccccCCCCCc-----cccceeccCcceeeecCC-------------Cceee
Confidence 22567899999865 789999999999999875 47999
Q ss_pred eccccchhHHHHHHHHHHHhhC----CCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCC
Q 004809 500 QSGTSMACPQAAGIAALLRGAH----PEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574 (729)
Q Consensus 500 ~sGTSMAaP~VAG~aALl~q~~----P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 574 (729)
++|||||||||||++|||+|++ |.++|++||++|++||++++. ..+.....||+|+||+.+|++
T Consensus 207 ~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~-----------~~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 207 LSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDD-----------DAPEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC------------------CGGGTTCBCCHHHHHH
T ss_pred cCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCC-----------CCCCccCceeeeEeCHHHHHH
Confidence 9999999999999999999874 789999999999999997653 223456689999999999986
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-49 Score=420.24 Aligned_cols=283 Identities=29% Similarity=0.365 Sum_probs=222.6
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
...+|..+++|+||+|+|||||||++||+|.++ +...++|..... .
T Consensus 15 ~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~---------------------------~~~~~~~~~~~~-------~ 60 (310)
T 2ixt_A 15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT-------P 60 (310)
T ss_dssp TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS-------C
T ss_pred chhhhhccCCCCCcEEEEEecCCCCCCHHHhhc---------------------------ccccccccCCCC-------C
Confidence 467999999999999999999999999999864 233344433210 0
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCC-----
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGV----- 250 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gv----- 250 (729)
......|..||||||||||+|....+ ..| +.||||+|+|+.+|++...+ ++.+++++||+||+++++
T Consensus 61 ~~~~~~d~~gHGT~vAgiia~~~~~n--~~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~ 133 (310)
T 2ixt_A 61 INNSCTDRNGHGTHVAGTALADGGSD--QAG-----IYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTK 133 (310)
T ss_dssp EETCCCCSSSHHHHHHHHHHCBCCTT--SCS-----CBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHhccCCCC--CCc-----eEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCC
Confidence 11235678999999999999975221 112 37999999999999998776 688899999999999887
Q ss_pred cEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCC--CCCcCCCCCceEEEcccccCccccEEEEeCCCcEE
Q 004809 251 DVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPF--IGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTV 328 (729)
Q Consensus 251 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~--~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~ 328 (729)
+|||||||... ....+..++.++.++|++||+||||+|.. ....++..+++|+|||++....
T Consensus 134 ~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~------------- 197 (310)
T 2ixt_A 134 TIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ------------- 197 (310)
T ss_dssp EEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE-------------
T ss_pred eEEEEcCCCCC---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc-------------
Confidence 99999999753 24567777888899999999999999975 3456678899999998541100
Q ss_pred EeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccE
Q 004809 329 TGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPA 408 (729)
Q Consensus 329 ~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~ 408 (729)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCC-C---CCccCcEEecCCCEEeecCCCCC
Q 004809 409 VFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISC-P---FVLKPDVMAPGDSILAAWPSNLA 484 (729)
Q Consensus 409 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~-~---~ilKPDI~APG~~I~sa~~~~~~ 484 (729)
.....++.||++||.... . ...||||+|||++|+++++.
T Consensus 198 ----------------------------------~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s~~~~--- 240 (310)
T 2ixt_A 198 ----------------------------------NGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN--- 240 (310)
T ss_dssp ----------------------------------TTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEEECTT---
T ss_pred ----------------------------------CCCeeeccccCCCCccCCccccccCCCeeEECCCCCEeeecCC---
Confidence 000156889999995321 1 12499999999999999874
Q ss_pred ccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCc
Q 004809 485 VSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGA 564 (729)
Q Consensus 485 ~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~ 564 (729)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||++.+..+. ....+..++.|||
T Consensus 241 ----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~------~~a~~g~d~~~G~ 304 (310)
T 2ixt_A 241 ----------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG------YGAAIGDDYASGF 304 (310)
T ss_dssp ----------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS------TTCCSSSBTTTBT
T ss_pred ----------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC------cccccCCcccccc
Confidence 479999999999999999999999999999999999999999998764321 1134567789999
Q ss_pred cccCc
Q 004809 565 GHINP 569 (729)
Q Consensus 565 G~vn~ 569 (729)
|++|.
T Consensus 305 G~~~v 309 (310)
T 2ixt_A 305 GFARV 309 (310)
T ss_dssp CBCCC
T ss_pred ceeec
Confidence 99986
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-49 Score=415.36 Aligned_cols=257 Identities=33% Similarity=0.421 Sum_probs=215.9
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|+.. +|+||+|+|||||||++||+|.++ ++..++|.++.
T Consensus 21 ~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~~---------- 62 (279)
T 1thm_A 21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK---------------------------VVGGWDFVDND---------- 62 (279)
T ss_dssp HHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEETTTTB----------
T ss_pred HHHHhcC-CCCCCEEEEEccCCCCCCcchhcC---------------------------ccccccccCCC----------
Confidence 4588876 699999999999999999999753 34444444321
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEee
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMS 256 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~S 256 (729)
..+.|..+|||||||||+|...++ .| +.||||+|+|+.+|+++..+ ++.+++++||++|++.|++|||||
T Consensus 63 -~~~~d~~gHGT~vAgiia~~~~n~---~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S 133 (279)
T 1thm_A 63 -STPQNGNGHGTHCAGIAAAVTNNS---TG-----IAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLS 133 (279)
T ss_dssp -SCCCCSSSHHHHHHHHHHCCCSSS---SS-----CCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred -CCCCCCCCcHHHHHHHHhCccCCC---Cc-----cEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEe
Confidence 235788999999999999975432 22 37999999999999998776 778899999999999999999999
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCC
Q 004809 257 LGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPG 336 (729)
Q Consensus 257 lG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~ 336 (729)
||... ....+..++.++.++|++||+||||+|......+...+++|+|||++.
T Consensus 134 ~G~~~---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------ 186 (279)
T 1thm_A 134 LGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------------------ 186 (279)
T ss_dssp CCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT------------------------
T ss_pred cCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC------------------------
Confidence 99753 345677888889999999999999999877778888999999998542
Q ss_pred CCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhH
Q 004809 337 NSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTG 416 (729)
Q Consensus 337 ~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g 416 (729)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCC
Q 004809 417 DILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSN 496 (729)
Q Consensus 417 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 496 (729)
.+.++.||++||. |||+|||++|+++++. ..
T Consensus 187 ----------------------------~~~~~~fS~~G~~--------~dv~APG~~i~s~~~~-------------~~ 217 (279)
T 1thm_A 187 ----------------------------NDNKSSFSTYGSW--------VDVAAPGSSIYSTYPT-------------ST 217 (279)
T ss_dssp ----------------------------TSCBCTTCCCCTT--------CCEEEECSSEEEEETT-------------TE
T ss_pred ----------------------------CCCcCCcCCCCCc--------eEEEEcCCCeEEEeCC-------------CC
Confidence 1256889999974 5999999999999874 47
Q ss_pred ceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCC
Q 004809 497 FNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574 (729)
Q Consensus 497 y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 574 (729)
|..++|||||||||||++||| ++|.+++.+||++|++||+++... ...||+|+||+.+|++
T Consensus 218 ~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~---------------~~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 218 YASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT---------------GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp EEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB---------------TTTBSSEECCHHHHHH
T ss_pred EEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC---------------CccccCCeeCHHHHhc
Confidence 999999999999999999999 579999999999999999987532 1478999999999975
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-50 Score=427.63 Aligned_cols=270 Identities=23% Similarity=0.297 Sum_probs=217.0
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
+++|+.+..++||+|||||||||++||+|.++ .+.+..++..+.
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~~~---------- 54 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGA--------------------------DLTRLPSLVSGE---------- 54 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTC--------------------------EEEECC----------------
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCC--------------------------cccCCCcccCCC----------
Confidence 45999988779999999999999999999864 112222222211
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC--CChHHHHHHHHHHHHcCCcEEEe
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG--SFTSDIIAAIDQAIIDGVDVLSM 255 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~il~ai~~A~~~gvdVIn~ 255 (729)
.....|..||||||||||||+... | +.||||+|+|+.+|++.+.+ +...++++||+||+++|++|||+
T Consensus 55 ~~~~~d~~gHGThVAGiiag~~~~-----~-----~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~ 124 (306)
T 4h6w_A 55 ANANGSMSTHGTHVASIIFGQHDS-----P-----VTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINV 124 (306)
T ss_dssp ----CCCCHHHHHHHHHHHCCTTS-----S-----SCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCCCCchHHHHHHHHccccC-----C-----cceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeec
Confidence 112346789999999999997421 1 37999999999999986553 67788999999999999999999
Q ss_pred ecCCCC-CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeec
Q 004809 256 SLGLDG-VDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLY 334 (729)
Q Consensus 256 SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~ 334 (729)
|||... .......+..++..+.++|++||+||||+|......++..+++|+|||++.
T Consensus 125 s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~---------------------- 182 (306)
T 4h6w_A 125 SAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD---------------------- 182 (306)
T ss_dssp CCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT----------------------
T ss_pred cccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC----------------------
Confidence 999643 233455677788889999999999999999887778888899999998542
Q ss_pred CCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechh
Q 004809 335 PGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSK 414 (729)
Q Consensus 335 ~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~ 414 (729)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCC
Q 004809 415 TGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSF 494 (729)
Q Consensus 415 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 494 (729)
...+++||++|+.. .||||+|||++|+++++.
T Consensus 183 ------------------------------~~~~~~~s~~g~~~-----~~~di~APG~~i~s~~~~------------- 214 (306)
T 4h6w_A 183 ------------------------------QGKPVDFSNWGDAY-----QKQGILAPGKDILGAKPN------------- 214 (306)
T ss_dssp ------------------------------TSCBCSSSCBCHHH-----HHHEEEEECSSEEEECTT-------------
T ss_pred ------------------------------CCCccccccccCCc-----CcceeecCCcCcccccCC-------------
Confidence 12567899999865 789999999999999874
Q ss_pred CCceeeccccchhHHHHHHHHHHHhh----CCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCcc
Q 004809 495 SNFNLQSGTSMACPQAAGIAALLRGA----HPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPD 570 (729)
Q Consensus 495 ~~y~~~sGTSMAaP~VAG~aALl~q~----~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 570 (729)
+.|..++|||||||||||++|||+++ +|.|+|++||++|++||+++...+ ......||+|+||+.
T Consensus 215 ~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~-----------~~~~~~~G~G~ln~~ 283 (306)
T 4h6w_A 215 GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD-----------TDDQSRCLMGKLNIL 283 (306)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT-----------CSCGGGGTTCBCCHH
T ss_pred CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC-----------CCCCCCcceeecCHH
Confidence 47999999999999999999999864 699999999999999999875432 223457999999999
Q ss_pred CcCC
Q 004809 571 KALD 574 (729)
Q Consensus 571 ~Al~ 574 (729)
+|++
T Consensus 284 ~Av~ 287 (306)
T 4h6w_A 284 DAIE 287 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=424.88 Aligned_cols=264 Identities=28% Similarity=0.409 Sum_probs=216.6
Q ss_pred CCCCCcCCCCCC--CcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCC
Q 004809 97 KSGAWPVSKFGK--DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTI 174 (729)
Q Consensus 97 ~~~~w~~~~~G~--gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~ 174 (729)
.+.+|..+ +|+ ||+|+|||||||++||+|.++ +...++|..+...
T Consensus 17 ~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~----- 63 (320)
T 2z30_A 17 APSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRGKVS----- 63 (320)
T ss_dssp CGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGGCCB-----
T ss_pred hHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc---------------------------cccCccccCCccC-----
Confidence 45699988 899 999999999999999999753 2233333322100
Q ss_pred ccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc-----
Q 004809 175 TIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID----- 248 (729)
Q Consensus 175 ~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~----- 248 (729)
.......|..||||||||||+|.. +..| +.||||+|+|+.+|+++..| +..+++++||+||++.
T Consensus 64 -~~~~~~~d~~gHGT~vAgiia~~~----n~~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~ 133 (320)
T 2z30_A 64 -TKLRDCADQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVA 133 (320)
T ss_dssp -CCHHHHBCSSSHHHHHHHHHHCCS----SSBS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCS
T ss_pred -CCCCCCCCCCCCHHHHHHHHHccc----CCCc-----eEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCccccc
Confidence 000123578899999999999962 1122 37999999999999998776 7788999999999987
Q ss_pred ---------------CCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccC
Q 004809 249 ---------------GVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMD 313 (729)
Q Consensus 249 ---------------gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d 313 (729)
+++|||||||... ....+..++.++.++|++||+||||+|.....+++..|++|+|||++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~- 209 (320)
T 2z30_A 134 DKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS- 209 (320)
T ss_dssp CTTSSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-
T ss_pred ccccccccccccccCCceEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCC-
Confidence 9999999999754 245677777889999999999999999887788888999999998542
Q ss_pred ccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEe
Q 004809 314 RELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFIS 393 (729)
Q Consensus 314 ~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~ 393 (729)
T Consensus 210 -------------------------------------------------------------------------------- 209 (320)
T 2z30_A 210 -------------------------------------------------------------------------------- 209 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCC
Q 004809 394 DFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGD 473 (729)
Q Consensus 394 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~ 473 (729)
.+.++.||++|| +|+|||+
T Consensus 210 ---------------------------------------------------~~~~~~~S~~g~----------~v~APG~ 228 (320)
T 2z30_A 210 ---------------------------------------------------NDNIASFSNRQP----------EVSAPGV 228 (320)
T ss_dssp ---------------------------------------------------TSCBCTTSCSSC----------SEEEECS
T ss_pred ---------------------------------------------------CCCcCcccCCCC----------CEEeCCC
Confidence 125688999986 7899999
Q ss_pred CEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhC-------------CCCCHHHHHHHHHhccccC
Q 004809 474 SILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAH-------------PEWSPAAIRSAIMTTSDST 540 (729)
Q Consensus 474 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-------------P~~sp~~Ik~~L~~TA~~~ 540 (729)
+|+++++. +.|..++|||||||||||++|||+|++ |+|++.+||++|++||+++
T Consensus 229 ~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~ 295 (320)
T 2z30_A 229 DILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDL 295 (320)
T ss_dssp SEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCC
T ss_pred CeEEeccC-------------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCccC
Confidence 99999874 478999999999999999999999999 9999999999999999987
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCccccCccCcCC
Q 004809 541 DNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574 (729)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 574 (729)
.. +..+..||+|+||+.+|++
T Consensus 296 ~~-------------~g~~~~~G~G~vd~~~A~~ 316 (320)
T 2z30_A 296 GP-------------TGWDADYGYGVVRAALAVQ 316 (320)
T ss_dssp SS-------------SSSBTTTBTCBCCHHHHHH
T ss_pred CC-------------CCCCCCcCCceeCHHHHHH
Confidence 42 2245689999999999986
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=430.17 Aligned_cols=271 Identities=19% Similarity=0.200 Sum_probs=217.9
Q ss_pred CCCCCcCCCCCC--CcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCC
Q 004809 97 KSGAWPVSKFGK--DIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTI 174 (729)
Q Consensus 97 ~~~~w~~~~~G~--gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~ 174 (729)
...+|+. ++|+ ||+||||||||| +||+|.++ ++..++|..+.+
T Consensus 32 ~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~---------------------------~~~~~~~~~~~~------ 76 (347)
T 2iy9_A 32 LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS---------------------------EFAKFSFTQDGS------ 76 (347)
T ss_dssp CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC---------------------------EEEEEECBTTCC------
T ss_pred hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC---------------------------cccCCcccCCCC------
Confidence 4568988 8999 999999999999 99999754 333344433210
Q ss_pred ccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHc------
Q 004809 175 TIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIID------ 248 (729)
Q Consensus 175 ~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~------ 248 (729)
+.+...+.|..||||||||||+|+ .| +.||||+|+|+.+|+++..+.. ++++||+||+++
T Consensus 77 ~~~~~~~~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~a~~~~~~~~~ 142 (347)
T 2iy9_A 77 PFPVKKSEALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIPDGVQD--SWIRAIESIMSNVFLAPG 142 (347)
T ss_dssp SSCCSSSHHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCSSBCTT--HHHHHHHHHHTCTTSCTT
T ss_pred CCCCCCCCCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEecCCCHH--HHHHHHHHHHhhhhcccC
Confidence 111124567889999999999997 12 2799999999999999765543 999999999999
Q ss_pred CCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCC-------CCCcCCCCC----------ceEEEcccc
Q 004809 249 GVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPF-------IGTLHNGIP----------WVMTVAAGT 311 (729)
Q Consensus 249 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------~~t~~~~~p----------~vitVgAst 311 (729)
|++|||||||..........+..++..+.++|++||+||||+|.. ....++..+ ++|+|||++
T Consensus 143 ~~~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~ 222 (347)
T 2iy9_A 143 EEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALA 222 (347)
T ss_dssp EEEEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEEC
T ss_pred CceEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcc
Confidence 999999999976544466778888889999999999999999975 345667778 999999965
Q ss_pred c--CccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEE
Q 004809 312 M--DRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGG 389 (729)
Q Consensus 312 ~--d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~ 389 (729)
. +...
T Consensus 223 ~~~~g~~------------------------------------------------------------------------- 229 (347)
T 2iy9_A 223 QYRKGET------------------------------------------------------------------------- 229 (347)
T ss_dssp CCCTTSC-------------------------------------------------------------------------
T ss_pred cCCCCce-------------------------------------------------------------------------
Confidence 4 1110
Q ss_pred EEEecCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEE
Q 004809 390 VFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVM 469 (729)
Q Consensus 390 i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~ 469 (729)
......++.||++||+ ||||+
T Consensus 230 ----------------------------------------------------~~~~~~~~~fS~~G~~-------~~di~ 250 (347)
T 2iy9_A 230 ----------------------------------------------------PVLHGGGITGSRFGNN-------WVDIA 250 (347)
T ss_dssp ----------------------------------------------------CCBCCCSSSCBCBCTT-------TCSEE
T ss_pred ----------------------------------------------------ecccCCCCCCCCCCCC-------CCEEE
Confidence 0001245799999995 78999
Q ss_pred ecCCCEEeecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCccc
Q 004809 470 APGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKD 549 (729)
Q Consensus 470 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~ 549 (729)
|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||++....
T Consensus 251 APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~------ 311 (347)
T 2iy9_A 251 APGQNITFLRPD-------------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSL------ 311 (347)
T ss_dssp EECSSEEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGG------
T ss_pred eCCCCeEeecCC-------------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCC------
Confidence 999999999874 4799999999999999999999999999999999999999999987532
Q ss_pred CCCCCCCCCCCCCCccccCccCcCCC
Q 004809 550 IGDDNKPATPIAMGAGHINPDKALDP 575 (729)
Q Consensus 550 ~~~~~~~~~~~~~G~G~vn~~~Al~~ 575 (729)
....||+|+||+.+|++.
T Consensus 312 --------~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 312 --------VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp --------TTTSGGGEECCHHHHHHH
T ss_pred --------CCccccCCEecHHHHHHH
Confidence 135899999999999873
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=421.53 Aligned_cols=298 Identities=25% Similarity=0.330 Sum_probs=220.2
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCee---eceeeccccccccCCCC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKL---IGARFFNKGLLAKNPTI 174 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~ki---ig~~~~~~~~~~~~~~~ 174 (729)
..+|+.+++|+||+||||||||+ +||+|.++-. ..|+-.......+. .+.+. .....+.+.+.. ...
T Consensus 22 ~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~----~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~--~~~ 91 (340)
T 3lpc_A 22 DKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVL----PGYDFISNSQISLD---GDGRDADPFDEGDWFDNWAC--GGR 91 (340)
T ss_dssp HHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBC----CCEECCCCHHHHCS---SSSSBSCCBCCCCCBCTTTT--SCT
T ss_pred HHHHHhcCCCCCeEEEEEcCCCC-CChhhhcccc----cCccccCCcccccc---CCCccCCccccccccccccc--cCC
Confidence 45999999999999999999998 9999986411 11110000000000 00000 000000000000 011
Q ss_pred ccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH-------
Q 004809 175 TIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII------- 247 (729)
Q Consensus 175 ~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~------- 247 (729)
+.+.....|..||||||||||+|...+.. | +.||||+|+|+.+|++...+++.++++++|+||++
T Consensus 92 ~~~~~~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~~ 163 (340)
T 3lpc_A 92 PDPRKERSDSSWHGSHVAGTIAAVTNNRI---G-----VAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIP 163 (340)
T ss_dssp TCGGGSCBCCCCHHHHHHHHHHCCCSSSS---S-----CCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTSC
T ss_pred CCcccCCCCCCCCHHHHHHHHHccCCCCC---c-----ceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhcccccccc
Confidence 22233467889999999999999754332 2 37999999999999998888889999999999998
Q ss_pred ---cCCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcCCCCCceEEEcccccCccccEEEEeC
Q 004809 248 ---DGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG-TLHNGIPWVMTVAAGTMDRELGATLTLG 323 (729)
Q Consensus 248 ---~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-t~~~~~p~vitVgAst~d~~~~~~~~l~ 323 (729)
.+++|||||||... .....+..++..+.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 164 ~~~~~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----------- 230 (340)
T 3lpc_A 164 ENRNPAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS----------- 230 (340)
T ss_dssp CCSSCCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT-----------
T ss_pred cccCCCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC-----------
Confidence 89999999999743 23455677777888999999999999997643 45678899999998542
Q ss_pred CCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecc
Q 004809 324 NGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQ 403 (729)
Q Consensus 324 ~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 403 (729)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCC
Q 004809 404 SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNL 483 (729)
Q Consensus 404 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~ 483 (729)
.+.++.||++|| ||||+|||++|+++++...
T Consensus 231 -----------------------------------------~~~~~~~S~~g~--------~~di~ApG~~i~s~~~~~~ 261 (340)
T 3lpc_A 231 -----------------------------------------RGIRASFSNYGV--------DVDLAAPGQDILSTVDSGT 261 (340)
T ss_dssp -----------------------------------------TSSBCTTCCBST--------TCCEEEECSSEEEEEESCS
T ss_pred -----------------------------------------CCCcCCCCCCCC--------CceEEecCCCeecccCCCC
Confidence 125689999997 6799999999999987542
Q ss_pred CccccCCCCCCCCceeeccccchhHHHHHHHHHHHhh-C---CCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCC
Q 004809 484 AVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGA-H---PEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATP 559 (729)
Q Consensus 484 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~-~---P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~ 559 (729)
.. .....|..++|||||||||||++|||+|+ + |.|++++||++|++||++... ..+
T Consensus 262 ~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~--------------~~~ 321 (340)
T 3lpc_A 262 RR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG--------------RLD 321 (340)
T ss_dssp SS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS--------------CCS
T ss_pred cC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC--------------CCC
Confidence 11 11246999999999999999999999998 5 999999999999999997642 135
Q ss_pred CCCCccccCccCcCCC
Q 004809 560 IAMGAGHINPDKALDP 575 (729)
Q Consensus 560 ~~~G~G~vn~~~Al~~ 575 (729)
..||+|+||+.+|++.
T Consensus 322 ~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 322 RALGSGIVDAEAAVNS 337 (340)
T ss_dssp SCCCSSBCCHHHHHHH
T ss_pred CCcccceecHHHHHHH
Confidence 5899999999999874
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-48 Score=431.76 Aligned_cols=291 Identities=26% Similarity=0.305 Sum_probs=223.7
Q ss_pred CCCCc-CCCCCCCcEEEEEcccCCC------CCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeecccccccc
Q 004809 98 SGAWP-VSKFGKDIIIGVVDTGVWP------ESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAK 170 (729)
Q Consensus 98 ~~~w~-~~~~G~gvvVgVIDtGid~------~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~ 170 (729)
+.+|. .+++|+||+|||||||||+ .||+|.++ ++..++|.+.
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~---------------------------i~~~~~~~~~---- 59 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK---------------------------ITALYALGRT---- 59 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC---------------------------EEEEEETTTT----
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC---------------------------EeeeccccCC----
Confidence 45887 6999999999999999999 79998753 3333444321
Q ss_pred CCCCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCC---ChHHHHHHHHHHHH
Q 004809 171 NPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGS---FTSDIIAAIDQAII 247 (729)
Q Consensus 171 ~~~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~---~~~~il~ai~~A~~ 247 (729)
..+.|..||||||||||+|+.. + +.||||+|+|+.+|+++..+. ..+++.++|++|++
T Consensus 60 --------~~~~d~~gHGT~VAgiiag~g~------~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~ 120 (434)
T 1wmd_A 60 --------NNANDTNGHGTHVAGSVLGNGS------T-----NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYS 120 (434)
T ss_dssp --------TCCCCSSSHHHHHHHHHHCCSS------S-----SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHH
T ss_pred --------CCCCCCCCcHHHHHHHHHcCCC------C-----ceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHh
Confidence 2467889999999999999631 1 379999999999999987663 45679999999999
Q ss_pred cCCcEEEeecCCCCCCCCCcHHHHHHHHH-HhCCcEEEEecCCCCCCC--CCcCCCCCceEEEcccccCccccEEEEeCC
Q 004809 248 DGVDVLSMSLGLDGVDLYEDPVAIATFAA-IEKNIFVSTSAGNQGPFI--GTLHNGIPWVMTVAAGTMDRELGATLTLGN 324 (729)
Q Consensus 248 ~gvdVIn~SlG~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~--~t~~~~~p~vitVgAst~d~~~~~~~~l~~ 324 (729)
.|++|||||||......+ +....++.++ .++|++||+||||+|... ...++.++++|+|||++..+.....
T Consensus 121 ~g~~Vin~S~G~~~~~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~~~----- 194 (434)
T 1wmd_A 121 AGARIHTNSWGAAVNGAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGS----- 194 (434)
T ss_dssp TTCSEEEECCCBCCTTCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGCG-----
T ss_pred cCCeEEEecCCCCcCCcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCcccCc-----
Confidence 999999999998652222 3444555555 589999999999999764 3456788999999997643321000
Q ss_pred CcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccc
Q 004809 325 GNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQS 404 (729)
Q Consensus 325 g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 404 (729)
T Consensus 195 -------------------------------------------------------------------------------- 194 (434)
T 1wmd_A 195 -------------------------------------------------------------------------------- 194 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCC
Q 004809 405 SFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLA 484 (729)
Q Consensus 405 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~ 484 (729)
.....+.++.||++||+.+.+ +||||+|||++|+++++....
T Consensus 195 ------------------------------------~~~~~~~~a~fS~~G~~~~g~--~kpdi~ApG~~i~s~~~~~~~ 236 (434)
T 1wmd_A 195 ------------------------------------YADNINHVAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAP 236 (434)
T ss_dssp ------------------------------------GGSCTTSBCTTSCCCCCTTSC--CCCCEEEECSSEEEECCTTCC
T ss_pred ------------------------------------ccCCCCccccccCCCCCCCCC--CCceEEcCCCCeEecCCCCCC
Confidence 011234789999999999876 999999999999999864321
Q ss_pred ccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCC-----CHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCC
Q 004809 485 VSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEW-----SPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATP 559 (729)
Q Consensus 485 ~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~-----sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~ 559 (729)
.... .......|..++|||||||||||++|||+|++|++ ++++||++|++||+++.. ...+
T Consensus 237 ~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~-------------~~~~ 302 (434)
T 1wmd_A 237 DSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-------------GYPN 302 (434)
T ss_dssp GGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-------------CSSC
T ss_pred Cccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC-------------CCCC
Confidence 1000 00113579999999999999999999999999876 899999999999987531 2356
Q ss_pred CCCCccccCccCcCCCC
Q 004809 560 IAMGAGHINPDKALDPG 576 (729)
Q Consensus 560 ~~~G~G~vn~~~Al~~g 576 (729)
+.||+|+||+.+|++..
T Consensus 303 ~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 303 GNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp TTTTTCBCCHHHHHTCE
T ss_pred ccCCcCeEeHHHhcccc
Confidence 78999999999999744
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-47 Score=453.12 Aligned_cols=359 Identities=22% Similarity=0.240 Sum_probs=246.8
Q ss_pred CCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC---CChHHHHHHHHHHHH-----cCCcEE
Q 004809 182 RDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG---SFTSDIIAAIDQAII-----DGVDVL 253 (729)
Q Consensus 182 ~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~il~ai~~A~~-----~gvdVI 253 (729)
.|.+||||||||||||.. ++ .| +.||||+|+|+.+|+++..+ ++..+++.+|.+|++ .|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~---~g-----~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS---RD-----VDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS---SS-----SCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CC---CC-----ceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478899999999999985 22 12 38999999999999997653 356778888888887 799999
Q ss_pred EeecCCCCCCCCCcHHHHHHHHHH-hCCcEEEEecCCCCCCCCC--cCC--CCCceEEEcccccCccccEEEEeCCCcEE
Q 004809 254 SMSLGLDGVDLYEDPVAIATFAAI-EKNIFVSTSAGNQGPFIGT--LHN--GIPWVMTVAAGTMDRELGATLTLGNGNTV 328 (729)
Q Consensus 254 n~SlG~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~G~~~~t--~~~--~~p~vitVgAst~d~~~~~~~~l~~g~~~ 328 (729)
|||||........+.+..++.++. ++|++||+||||+|+...+ .++ ..+++|+|||++.+.........
T Consensus 338 NmS~G~~~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~------ 411 (1354)
T 3lxu_X 338 NMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM------ 411 (1354)
T ss_dssp EECCCCCCSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC----------
T ss_pred EcCCccCCCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc------
Confidence 999998754444667777877876 8999999999999986544 344 37999999997643321100000
Q ss_pred EeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccE
Q 004809 329 TGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPA 408 (729)
Q Consensus 329 ~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~ 408 (729)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCcccc
Q 004809 409 VFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQT 488 (729)
Q Consensus 409 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~ 488 (729)
.....+.++.||||||+.+++ +||||+|||++|+++....
T Consensus 412 --------------------------------~~~~~g~~asFSS~GPt~dg~--~KpDIaAPG~~I~St~~~~------ 451 (1354)
T 3lxu_X 412 --------------------------------REKLPGNVYTWTSRDPCIDGG--QGVTVCAPGGAIASVPQFT------ 451 (1354)
T ss_dssp --------------------------------------CCCCCCCCSCCSSSS--CCEEEEEEC----------------
T ss_pred --------------------------------ccCCCCccccccCCCCCccCC--CcceEEecCceEEEeecCC------
Confidence 001124789999999998866 9999999999999875532
Q ss_pred CCCCCCCCceeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCc
Q 004809 489 NSKLSFSNFNLQSGTSMACPQAAGIAALLRG----AHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGA 564 (729)
Q Consensus 489 ~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~ 564 (729)
.+.|..++|||||||||||++|||++ ++|+|++.+||++|++||++... .+++.||+
T Consensus 452 -----~~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~--------------~~~~~~G~ 512 (1354)
T 3lxu_X 452 -----MSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY--------------VDPFAQGH 512 (1354)
T ss_dssp ----------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT--------------SCTTTSSS
T ss_pred -----CCceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC--------------CCcccccC
Confidence 25789999999999999999999976 89999999999999999998743 24568999
Q ss_pred cccCccCcCCCCccccCChhhHHHHhhhcCCCc-cceeEeccccccccCCCCCCCCCCceeeeeccCCCceeEEEEEEEE
Q 004809 565 GHINPDKALDPGLIYDATTEDYVSLLCALNLTM-KRIQTITRSYSVNCSTSSLDLNYPSFIAFFNANESKSVQEFQRTVT 643 (729)
Q Consensus 565 G~vn~~~Al~~glv~d~~~~dy~~~lc~~~~~~-~~~~~~~~~~~~~c~~~~~~lN~ps~~~~~~~~~~~~~~~~~rtvt 643 (729)
|+||+.+|++..+.|+..+.+|+.|+|..+... ..| ..+. + .+ +... ...++++-+..
T Consensus 513 GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgI--ylR~--------~-~~--~~~~--------~~tv~V~p~f~ 571 (1354)
T 3lxu_X 513 GLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGI--HLRQ--------G-VQ--RNSI--------DYNVYIEPIFY 571 (1354)
T ss_dssp SBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSE--EECS--------S-CC--CSCE--------EEEEEEEEEES
T ss_pred CEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCce--EEec--------c-cc--CCce--------EEEEEEeeeec
Confidence 999999999999999999999999999987532 222 1111 0 00 0100 01223333332
Q ss_pred ecC--CCCeE----EEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCCCCCCeeEEEEEEEEEcC---CceEE
Q 004809 644 NVG--EGVST----YTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETG---GKHVV 714 (729)
Q Consensus 644 nvg--~~~~t----Y~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~l~~~~~~---~~~~v 714 (729)
|-. +.... -++.+...+ --|. .|..|.+ .++.++|.|+++.+.... +..+++|...|.+ ..+..
T Consensus 572 ~~~~~~~~~~i~f~~~l~L~~t~-~wv~-~p~~l~l--~~~~r~~~v~vDp~~L~~---G~h~~~v~~~D~~~~~~gp~f 644 (1354)
T 3lxu_X 572 NDKEADPKDKFNFNVRLNLIASQ-PWVQ-CGAFLDL--SYGTRSIAVRVDPTGLQP---GVHSAVIRAYDTDCVQKGSLF 644 (1354)
T ss_dssp SCSCSSSTTCSCCCCEEEEEESS-TTEE-ECSCEEC--TTSCEEEEEEECGGGCCS---EEEEEEEEEEESSCTTSCCSE
T ss_pred CcccCChhhccceEEEEEEecCC-Ccee-cccceee--cCCCceEEEEECCCCCCC---cceeEEEEEEEcCCcccCceE
Confidence 211 11111 222222221 1222 2666666 477889999999876433 4789999988643 36899
Q ss_pred EEEEEEEe
Q 004809 715 KSPIVVTS 722 (729)
Q Consensus 715 ~~P~~~~~ 722 (729)
|+||.|..
T Consensus 645 ~ipvTv~~ 652 (1354)
T 3lxu_X 645 EIPVTVVQ 652 (1354)
T ss_dssp EEEEEEEE
T ss_pred EeeEEEEe
Confidence 99998764
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=394.26 Aligned_cols=235 Identities=29% Similarity=0.381 Sum_probs=200.0
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|..+++|+||+|+|||||||++||+|.++ ++..++|.+..
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~~---------- 61 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR---------------------------SVSGYDFVDND---------- 61 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC---------------------------EEEEEETTTTB----------
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC---------------------------ccccccccCCC----------
Confidence 46899999999999999999999999999753 23333443321
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc--CCcEEE
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID--GVDVLS 254 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~--gvdVIn 254 (729)
..+.|..+|||||||||+|+. .||||+|+|+.+|+++..+ ++.+++++||+|+++. +++|||
T Consensus 62 -~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin 126 (284)
T 1sh7_A 62 -ADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVAN 126 (284)
T ss_dssp -SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEE
T ss_pred -CCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEE
Confidence 236688999999999999872 5999999999999998776 7788999999999984 799999
Q ss_pred eecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeee
Q 004809 255 MSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI-GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSL 333 (729)
Q Consensus 255 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~ 333 (729)
||||.. ....+..++.++.++|++||+||||+|... ...++..|++|+|||++.
T Consensus 127 ~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------------- 181 (284)
T 1sh7_A 127 MSLGGG----QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS--------------------- 181 (284)
T ss_dssp ECCCBS----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT---------------------
T ss_pred eCCCCC----CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC---------------------
Confidence 999975 346777888889999999999999999754 345678899999998542
Q ss_pred cCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEech
Q 004809 334 YPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNS 413 (729)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~ 413 (729)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCC
Q 004809 414 KTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLS 493 (729)
Q Consensus 414 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 493 (729)
.+.++.||++||. |||+|||++|+++++.
T Consensus 182 -------------------------------~~~~~~~S~~G~~--------~di~ApG~~i~s~~~~------------ 210 (284)
T 1sh7_A 182 -------------------------------SDSRSSFSNWGSC--------VDLFAPGSQIKSAWYD------------ 210 (284)
T ss_dssp -------------------------------TSBBCTTCCBSTT--------CCEEEECSSEEEECTT------------
T ss_pred -------------------------------CCCcCcccCCCCc--------cEEEeccCCeEEecCC------------
Confidence 1256899999985 4999999999999874
Q ss_pred CCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 004809 494 FSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTD 541 (729)
Q Consensus 494 ~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~ 541 (729)
+.|..++|||||||||||++|||+|++|+|++++||++|++||++..
T Consensus 211 -~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 211 -GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp -SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred -CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 47999999999999999999999999999999999999999999764
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-46 Score=392.02 Aligned_cols=237 Identities=30% Similarity=0.361 Sum_probs=199.4
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|..+++|+||+|+|||||||++||+|.++ +...++|.++
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~---------------------------~~~~~d~~~~----------- 62 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR---------------------------ASSGYDFIDN----------- 62 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTTT-----------
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc---------------------------cccCeecCCC-----------
Confidence 45799999999999999999999999999754 2223344322
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHH--cCCcEEE
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAII--DGVDVLS 254 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~--~gvdVIn 254 (729)
...+.|..+|||||||||+|+. .||||+|+|+.+|++++.+ +..+++++||+|+++ .|++|||
T Consensus 63 ~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin 128 (278)
T 2b6n_A 63 DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVAN 128 (278)
T ss_dssp BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEE
T ss_pred CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEE
Confidence 1235788999999999999862 5999999999999998776 788899999999997 5899999
Q ss_pred eecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeee
Q 004809 255 MSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG-TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSL 333 (729)
Q Consensus 255 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~ 333 (729)
||||... ...+..++.++.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 129 ~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------------- 183 (278)
T 2b6n_A 129 MSLGGGA----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS--------------------- 183 (278)
T ss_dssp ECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------------
T ss_pred ECCCCCc----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC---------------------
Confidence 9999753 466777788889999999999999997543 34678899999998542
Q ss_pred cCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEech
Q 004809 334 YPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNS 413 (729)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~ 413 (729)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCC
Q 004809 414 KTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLS 493 (729)
Q Consensus 414 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 493 (729)
.+.++.||++|| +|||+|||++|++++...
T Consensus 184 -------------------------------~~~~~~~S~~G~--------~~di~ApG~~i~s~~~~~----------- 213 (278)
T 2b6n_A 184 -------------------------------NDSRSSFSNYGT--------CLDIYAPGSSITSSWYTS----------- 213 (278)
T ss_dssp -------------------------------TSBBCTTCCBST--------TCCEEEECSSEEEECTTS-----------
T ss_pred -------------------------------CCCcCCcCCCCC--------CCeEEeCCCCeECcccCC-----------
Confidence 125688999998 459999999999998642
Q ss_pred CCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 004809 494 FSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTD 541 (729)
Q Consensus 494 ~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~ 541 (729)
...|..++|||||||||||++|||+|++|+|++.+||++|++||++..
T Consensus 214 ~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 214 NSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp TTCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred CCCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 257899999999999999999999999999999999999999998753
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=389.77 Aligned_cols=236 Identities=28% Similarity=0.371 Sum_probs=200.8
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|..+++|+||+|+|||||||++||+|.++ +...++|..
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~------------ 61 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGR---------------------------ARVGYDALG------------ 61 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTS------------
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccC---------------------------eeccccCCC------------
Confidence 56899999999999999999999999999754 222333322
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc--CCcEEE
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID--GVDVLS 254 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~--gvdVIn 254 (729)
....|..||||||||||+|.. .||||+|+|+.+|+++..+ +..++++++|+|+++. +++|||
T Consensus 62 -~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin 126 (276)
T 4dzt_A 62 -GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVAN 126 (276)
T ss_dssp -SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEE
T ss_pred -CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEE
Confidence 235678899999999999872 6999999999999998776 7888999999999987 899999
Q ss_pred eecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC-cCCCCCceEEEcccccCccccEEEEeCCCcEEEeeee
Q 004809 255 MSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT-LHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSL 333 (729)
Q Consensus 255 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t-~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~ 333 (729)
||||... ...+..++..+.++|+++|+||||+|..... .+...+++|+|||++.
T Consensus 127 ~S~g~~~----~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------------- 181 (276)
T 4dzt_A 127 MSLGGGV----STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS--------------------- 181 (276)
T ss_dssp ECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------------
T ss_pred ECCCCCC----CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC---------------------
Confidence 9999743 5677788888999999999999999976543 3678899999998532
Q ss_pred cCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEech
Q 004809 334 YPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNS 413 (729)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~ 413 (729)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCC
Q 004809 414 KTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLS 493 (729)
Q Consensus 414 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 493 (729)
.+.++.||++||.. ||+|||++|++++...
T Consensus 182 -------------------------------~~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~----------- 211 (276)
T 4dzt_A 182 -------------------------------SDARASFSNYGSCV--------DLFAPGASIPSAWYTS----------- 211 (276)
T ss_dssp -------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTTS-----------
T ss_pred -------------------------------CCCcCCcCCCCCCc--------eEEeCCCCeEccccCC-----------
Confidence 22578999999864 9999999999998753
Q ss_pred CCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCC
Q 004809 494 FSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDN 542 (729)
Q Consensus 494 ~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~ 542 (729)
...|..++|||||||||||++|||+|++|++++++||++|++||++...
T Consensus 212 ~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 260 (276)
T 4dzt_A 212 DTATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRL 260 (276)
T ss_dssp SSCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred CCceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCcc
Confidence 2479999999999999999999999999999999999999999998753
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=390.83 Aligned_cols=227 Identities=30% Similarity=0.361 Sum_probs=193.6
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCC
Q 004809 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMN 179 (729)
Q Consensus 100 ~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 179 (729)
.|. ..+|+||+|+|||||||++||+|.++ +...++|.+
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~---------------------------~~~~~~~~~-------------- 61 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYYY-------------- 61 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESSS--------------
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc---------------------------cccccCCCC--------------
Confidence 344 37899999999999999999999754 222333331
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCC-------c
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGV-------D 251 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gv-------d 251 (729)
.+.|..+|||||||||+|+ ..||||+|+|+.+|+++..+ ++.+++++||+|++++++ +
T Consensus 62 ~~~d~~gHGT~vAgiia~~--------------~~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~ 127 (279)
T 2pwa_A 62 SSRDGNGHGTHCAGTVGSR--------------TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGV 127 (279)
T ss_dssp CSSCSSSHHHHHHHHHHCT--------------TTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEE
T ss_pred CCCCCCCCHHHHHHHHHhc--------------ccccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCcc
Confidence 2567899999999999987 26999999999999998876 788999999999999887 9
Q ss_pred EEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcCCCCCceEEEcccccCccccEEEEeCCCcEEEe
Q 004809 252 VLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG-TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTG 330 (729)
Q Consensus 252 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g 330 (729)
|||||||.. ....+..++.++.++|++||+||||+|.... ..++..|++|+|||++.
T Consensus 128 Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------ 185 (279)
T 2pwa_A 128 VASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR------------------ 185 (279)
T ss_dssp EEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT------------------
T ss_pred EEEecCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC------------------
Confidence 999999964 3567788888899999999999999997543 35678899999998542
Q ss_pred eeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEE
Q 004809 331 LSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVF 410 (729)
Q Consensus 331 ~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 410 (729)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCC
Q 004809 411 MNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNS 490 (729)
Q Consensus 411 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~ 490 (729)
.+.++.||++||. |||+|||++|+++++.
T Consensus 186 ----------------------------------~~~~~~~S~~G~~--------~di~APG~~i~s~~~~--------- 214 (279)
T 2pwa_A 186 ----------------------------------YDRRSSFSNYGSV--------LDIFGPGTDILSTWIG--------- 214 (279)
T ss_dssp ----------------------------------TSBBCTTCCBSTT--------CCEEEECSSEEEEETT---------
T ss_pred ----------------------------------CCCcCCcCCCCCc--------ceEEEecCCeEEeecC---------
Confidence 1256899999984 5999999999999874
Q ss_pred CCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 004809 491 KLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDST 540 (729)
Q Consensus 491 ~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~ 540 (729)
+.|..++|||||||||||++|||+|+ |+++|.+||++|++||++.
T Consensus 215 ----~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~ 259 (279)
T 2pwa_A 215 ----GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKG 259 (279)
T ss_dssp ----TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEES
T ss_pred ----CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccc
Confidence 47899999999999999999999999 9999999999999999975
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=416.00 Aligned_cols=291 Identities=17% Similarity=0.141 Sum_probs=214.0
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|..+++|+||+|||||||||++||+|.++-. ....++|.+.. ..+.+
T Consensus 28 ~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~-------------------------~~~~~d~~~~~-----~~p~~ 77 (471)
T 1p8j_A 28 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD-------------------------PGASFDVNDQD-----PDPQP 77 (471)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC-------------------------GGGCEETTTTB-----SCCCC
T ss_pred HHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC-------------------------ccCcccccCCC-----CCCCC
Confidence 4599999999999999999999999999986400 00122332211 00111
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH-cCCcEEEee
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII-DGVDVLSMS 256 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~-~gvdVIn~S 256 (729)
...+.|..+|||||||||||...++. | +.||||+|+|+.+|+++ +..+++++||+++++ ++++|||||
T Consensus 78 ~~~~~d~~gHGT~vAGiiaa~~~n~~---g-----~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~Vin~S 146 (471)
T 1p8j_A 78 RYTQMNDNRHGTRCAGEVAAVANNGV---C-----GVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSAS 146 (471)
T ss_dssp CCCTTCTTCHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEEEEC
T ss_pred ccCCCCCCCcHHHHHHHHHeeccCCC---C-----CEEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCeEEEec
Confidence 12456889999999999999753322 2 37999999999999985 446789999999999 999999999
Q ss_pred cCCCCCC----CCCcHHHHHHHHHH-----hCCcEEEEecCCCCCCCCC----cCCCCCceEEEcccccCccccEEEEeC
Q 004809 257 LGLDGVD----LYEDPVAIATFAAI-----EKNIFVSTSAGNQGPFIGT----LHNGIPWVMTVAAGTMDRELGATLTLG 323 (729)
Q Consensus 257 lG~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~t----~~~~~p~vitVgAst~d~~~~~~~~l~ 323 (729)
||..... .....+..++..+. .+|++||+||||+|..... ....++++|+|||++.
T Consensus 147 ~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~----------- 215 (471)
T 1p8j_A 147 WGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ----------- 215 (471)
T ss_dssp CBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT-----------
T ss_pred cCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC-----------
Confidence 9975321 12233444555554 3699999999999975321 1234589999998542
Q ss_pred CCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecc
Q 004809 324 NGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQ 403 (729)
Q Consensus 324 ~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 403 (729)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCC
Q 004809 404 SSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNL 483 (729)
Q Consensus 404 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~ 483 (729)
.+.++.||++||..... .+|+..+||.+|+++....
T Consensus 216 -----------------------------------------~g~~a~~S~~g~~~~~~--~~~~~~~~g~~i~st~~~~- 251 (471)
T 1p8j_A 216 -----------------------------------------FGNVPWYSEACSSTLAT--TYSSGNQNEKQIVTTDLRQ- 251 (471)
T ss_dssp -----------------------------------------TSCCCTTCCBCTTCCEE--EECCCSTTSCCEEEEETTT-
T ss_pred -----------------------------------------CCCcccccCCCCcceEE--eCCCCCCCCCCEEEeeCCC-
Confidence 12568899999987522 4555566678999987632
Q ss_pred CccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCC
Q 004809 484 AVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMG 563 (729)
Q Consensus 484 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G 563 (729)
..|..++|||||||||||++|||+|++|+|++++||++|++||++.+.....+.... .....+..||
T Consensus 252 -----------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~--~g~~~~~~~G 318 (471)
T 1p8j_A 252 -----------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNG--VGRKVSHSYG 318 (471)
T ss_dssp -----------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECT--TSCEEBTTTB
T ss_pred -----------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecC--CCcccCCCCC
Confidence 468999999999999999999999999999999999999999998865432222211 1112356899
Q ss_pred ccccCccCcCCCCc
Q 004809 564 AGHINPDKALDPGL 577 (729)
Q Consensus 564 ~G~vn~~~Al~~gl 577 (729)
+|+||+.+|++...
T Consensus 319 ~G~vda~~Av~~a~ 332 (471)
T 1p8j_A 319 YGLLDAGAMVALAQ 332 (471)
T ss_dssp TCBCCHHHHHHHHH
T ss_pred CEEEcHhHHHHHhh
Confidence 99999999997443
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-45 Score=406.01 Aligned_cols=279 Identities=20% Similarity=0.167 Sum_probs=201.0
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCC
Q 004809 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMN 179 (729)
Q Consensus 100 ~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 179 (729)
.|..+++|+||+|+|||||||++||+|.++- ......+.... ++ .....
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~--------------------------~~~~~~~v~~~---dg--~~f~~ 66 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRV--------------------------MVTDFENVPEE---DG--TRFHR 66 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTE--------------------------EEEEEECCCCC---C--------
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHcccc--------------------------cccCcccccCC---CC--ccccC
Confidence 7888999999999999999999999998640 00000110000 00 00002
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc------CCcE
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID------GVDV 252 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~------gvdV 252 (729)
.+.|..||||||||||+|+. .||||+|+|+.+|+++..| ++.+++++||+|+++. +++|
T Consensus 67 ~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~V 132 (546)
T 2qtw_B 67 QASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLV 132 (546)
T ss_dssp -CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEE
T ss_pred CCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeE
Confidence 35688999999999999872 5999999999999998777 7788999999999974 8999
Q ss_pred EEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEee
Q 004809 253 LSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI-GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGL 331 (729)
Q Consensus 253 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~ 331 (729)
||||||+. +...+..++..+.++|++||+||||+|... ...++..|++|+|||++.+...
T Consensus 133 INmSlGg~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~--------------- 193 (546)
T 2qtw_B 133 VLLPLAGG----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP--------------- 193 (546)
T ss_dssp EEECEEEE----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB---------------
T ss_pred EEecCCCC----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc---------------
Confidence 99999964 356777888889999999999999999754 3346788999999996532210
Q ss_pred eecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEe
Q 004809 332 SLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFM 411 (729)
Q Consensus 332 ~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i 411 (729)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCC
Q 004809 412 NSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSK 491 (729)
Q Consensus 412 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~ 491 (729)
...-..||++|| ||||+|||++|+++++..
T Consensus 194 ---------------------------------a~~s~~fSn~G~--------~vDI~APG~~I~St~~~~--------- 223 (546)
T 2qtw_B 194 ---------------------------------VTLGTLGTNFGR--------CVDLFAPGEDIIGASSDC--------- 223 (546)
T ss_dssp ---------------------------------CEETTEECCBST--------TCCEEEECSSEEEECTTS---------
T ss_pred ---------------------------------ccccCCcCCCCC--------cceEEecCccEEeeccCC---------
Confidence 000012899997 569999999999998753
Q ss_pred CCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcc-------cCCCCCCCCCCCCCCc
Q 004809 492 LSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIK-------DIGDDNKPATPIAMGA 564 (729)
Q Consensus 492 ~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~-------~~~~~~~~~~~~~~G~ 564 (729)
...|..++|||||||||||++|||+|++|+|+|++||++|++||.+.......+. ....-..+...+.+|+
T Consensus 224 --~~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~ 301 (546)
T 2qtw_B 224 --STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGW 301 (546)
T ss_dssp --TTCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTCC--C
T ss_pred --CCcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCccchhccCCcccccCC
Confidence 2478999999999999999999999999999999999999999986532211000 0000011224556788
Q ss_pred cc--cCccCcCC
Q 004809 565 GH--INPDKALD 574 (729)
Q Consensus 565 G~--vn~~~Al~ 574 (729)
|+ .++..+..
T Consensus 302 ~l~~~~~w~a~s 313 (546)
T 2qtw_B 302 QLFCRTVWSAHS 313 (546)
T ss_dssp CCEEEEEECCCC
T ss_pred CcchhchhccCC
Confidence 88 66666654
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-45 Score=412.91 Aligned_cols=283 Identities=20% Similarity=0.197 Sum_probs=212.4
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|..+++|+||+|||||||||++||+|.++- + ..+.++|.++.. .
T Consensus 44 ~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~------------------~~~~~d~~~~~~--------~ 90 (503)
T 2id4_A 44 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------C------------------AEGSWDFNDNTN--------L 90 (503)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------C------------------GGGCEETTTTBS--------C
T ss_pred HHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------c------------------ccCcccCCCCCC--------C
Confidence 458999999999999999999999999998641 0 012233332210 1
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEEeec
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMSL 257 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn~Sl 257 (729)
.....|..||||||||||||...++. | +.||||+|+|+.+|+++.. ++..++++||++|++.+ +||||||
T Consensus 91 ~~p~~d~~gHGT~vAGiiaa~~~n~~---~-----~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin~S~ 160 (503)
T 2id4_A 91 PKPRLSDDYHGTRCAGEIAAKKGNNF---C-----GVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSCSW 160 (503)
T ss_dssp CCCCSTTTTHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEECE
T ss_pred CCCCCCCCChHHHHHHHHHhccCCCC---C-----cEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEEeCC
Confidence 11235788999999999999753321 2 3799999999999998643 67889999999999988 9999999
Q ss_pred CCCCCC----CCCcHHHHHHHHHH-----hCCcEEEEecCCCCCCCC--CcC--CCCCceEEEcccccCccccEEEEeCC
Q 004809 258 GLDGVD----LYEDPVAIATFAAI-----EKNIFVSTSAGNQGPFIG--TLH--NGIPWVMTVAAGTMDRELGATLTLGN 324 (729)
Q Consensus 258 G~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~--t~~--~~~p~vitVgAst~d~~~~~~~~l~~ 324 (729)
|..... .....+..++..+. .+|++||+||||+|.... ..+ ..++++|+|||++.
T Consensus 161 G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~------------ 228 (503)
T 2id4_A 161 GPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH------------ 228 (503)
T ss_dssp ESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT------------
T ss_pred CcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC------------
Confidence 975321 12344556666665 479999999999996532 222 25678999998542
Q ss_pred CcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccc
Q 004809 325 GNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQS 404 (729)
Q Consensus 325 g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 404 (729)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEe----cCCCEEeecC
Q 004809 405 SFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMA----PGDSILAAWP 480 (729)
Q Consensus 405 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~A----PG~~I~sa~~ 480 (729)
.+.++.||++||.. |++| ||..|+++..
T Consensus 229 ----------------------------------------~~~~a~~S~~g~~~--------~~~a~~~gpG~~I~st~~ 260 (503)
T 2id4_A 229 ----------------------------------------KDLHPPYSEGCSAV--------MAVTYSSGSGEYIHSSDI 260 (503)
T ss_dssp ----------------------------------------TSCCCTTCCCCTTE--------EEEEECSBTTBCEEEECS
T ss_pred ----------------------------------------CCCcCCcCCCCCcc--------eEeecCCCCCCceEeecC
Confidence 12568999999976 7877 8999999954
Q ss_pred CCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCC-CCCcccCCCCCCCCCC
Q 004809 481 SNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNT-NSDIKDIGDDNKPATP 559 (729)
Q Consensus 481 ~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~-~~~~~~~~~~~~~~~~ 559 (729)
.. ..|..++|||||||||||++|||+|++|+|++++||++|++||+++... ...+.... ......
T Consensus 261 ~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~--~g~~~~ 326 (503)
T 2id4_A 261 NG------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSA--MGKKYS 326 (503)
T ss_dssp TT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECS--SSSEEB
T ss_pred CC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecC--CCCccC
Confidence 32 5799999999999999999999999999999999999999999987643 11111111 111234
Q ss_pred CCCCccccCccCcCCCCc
Q 004809 560 IAMGAGHINPDKALDPGL 577 (729)
Q Consensus 560 ~~~G~G~vn~~~Al~~gl 577 (729)
..||+|+||+.+|++...
T Consensus 327 ~~~G~G~vda~~Av~~a~ 344 (503)
T 2id4_A 327 HRYGFGKIDAHKLIEMSK 344 (503)
T ss_dssp TTTBTCBCCHHHHHHHHT
T ss_pred cccCCcEecHHHHHHHHh
Confidence 589999999999997433
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-45 Score=381.88 Aligned_cols=229 Identities=32% Similarity=0.382 Sum_probs=194.3
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCC
Q 004809 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMN 179 (729)
Q Consensus 100 ~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 179 (729)
+|... +|+||+|+|||||||++||+|.++ +...+.|..+
T Consensus 25 ~~~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~------------- 63 (279)
T 3f7m_A 25 AYDTS-AGAGACVYVIDTGVEDTHPDFEGR---------------------------AKQIKSYAST------------- 63 (279)
T ss_dssp EECTT-TTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEECSSS-------------
T ss_pred eecCC-CCCCCEEEEEcCCCCCCChhhccc---------------------------cccccCCCCC-------------
Confidence 56655 899999999999999999999754 2333333321
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcC-------Cc
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDG-------VD 251 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~g-------vd 251 (729)
..|..||||||||||+|+. .||||+|+|+.+|+++..+ +..++++++|+++++++ ++
T Consensus 64 -~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~ 128 (279)
T 3f7m_A 64 -ARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRT 128 (279)
T ss_dssp -SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEE
T ss_pred -CCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCe
Confidence 2378899999999999862 6999999999999998776 78889999999999886 89
Q ss_pred EEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC-cCCCCCceEEEcccccCccccEEEEeCCCcEEEe
Q 004809 252 VLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT-LHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTG 330 (729)
Q Consensus 252 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t-~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g 330 (729)
|||||||.. +...+..++..+.++|++||+||||+|..... .++..+++|+|||++.
T Consensus 129 Vin~S~g~~----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------ 186 (279)
T 3f7m_A 129 VASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS------------------ 186 (279)
T ss_dssp EEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT------------------
T ss_pred EEEeCCCcC----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC------------------
Confidence 999999964 46778888889999999999999999976433 3678899999998542
Q ss_pred eeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEE
Q 004809 331 LSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVF 410 (729)
Q Consensus 331 ~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 410 (729)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCC
Q 004809 411 MNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNS 490 (729)
Q Consensus 411 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~ 490 (729)
.+.++.||++||. |||+|||++|+++++.
T Consensus 187 ----------------------------------~~~~~~~S~~g~~--------~di~ApG~~i~s~~~~--------- 215 (279)
T 3f7m_A 187 ----------------------------------NDVRSTFSNYGRV--------VDIFAPGTSITSTWIG--------- 215 (279)
T ss_dssp ----------------------------------TSBBCTTCCBSTT--------CCEEEECSSEEEECGG---------
T ss_pred ----------------------------------CCCCCCCCCCCCC--------CeEEECCCCeEeecCC---------
Confidence 1257899999984 4999999999999874
Q ss_pred CCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCC
Q 004809 491 KLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDN 542 (729)
Q Consensus 491 ~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~ 542 (729)
+.|..++|||||||||||++|||+|++|+ ++++||++|++||++...
T Consensus 216 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~~ 262 (279)
T 3f7m_A 216 ----GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVL 262 (279)
T ss_dssp ----GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESCC
T ss_pred ----CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhcccccc
Confidence 46899999999999999999999999999 999999999999997643
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=402.81 Aligned_cols=295 Identities=22% Similarity=0.226 Sum_probs=198.6
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|.++++|+||+|||||||||++||+|.++ ...+.++|..+.. +
T Consensus 60 ~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n--------------------------~~~~~~~~~~~~~--------d 105 (600)
T 3hjr_A 60 WWAHRTGVLGQGVNVAVVDDGLAIAHPDLADN--------------------------VRPGSKNVVTGSD--------D 105 (600)
T ss_dssp HHHHHHTCSCTTCEEEEESSCCCTTCTTTGGG--------------------------BCSCCBCTTTSSS--------C
T ss_pred HHHHHcCCCCCCeEEEEEcCCCCCCChhHhhc--------------------------cccCcceeecCCC--------C
Confidence 34899999999999999999999999999864 0112223322211 1
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHH-HHHHHcCCcEEEe
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAI-DQAIIDGVDVLSM 255 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai-~~A~~~gvdVIn~ 255 (729)
.....|.++|||||||||||.. +..| +.||||+|+|+.+|++++.+ +..++++.|+ +++..++++|||+
T Consensus 106 p~p~~~~~gHGThVAGiIAa~~----n~~g-----~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~ 176 (600)
T 3hjr_A 106 PTPTDPDTAHGTSVSGIIAAVD----NAIG-----TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQ 176 (600)
T ss_dssp CCCCSTTCCHHHHHHHHHHCCS----SSSS-----CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEE
T ss_pred CCCCCCCCChHHHHHHHHhEeC----CCCC-----cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEec
Confidence 1223467899999999999852 2223 27999999999999998776 6677777666 6778899999999
Q ss_pred ecCCCCC-CCCCcHH-----HHHHHHH--HhCCcEEEEecCCCCCCCCC----------------------cCCCCCceE
Q 004809 256 SLGLDGV-DLYEDPV-----AIATFAA--IEKNIFVSTSAGNQGPFIGT----------------------LHNGIPWVM 305 (729)
Q Consensus 256 SlG~~~~-~~~~~~~-----~~a~~~a--~~~Gi~vV~AAGN~G~~~~t----------------------~~~~~p~vi 305 (729)
|||.... +...+.. ..++..+ ..+|+++|+||||.+..... ..+..+++|
T Consensus 177 S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~~I 256 (600)
T 3hjr_A 177 SYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLDPSNSNFWNL 256 (600)
T ss_dssp CCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTTSSGGGGSSSEE
T ss_pred ccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCcccccccCccccCcce
Confidence 9997532 2222221 1111122 25799999999997632100 011223333
Q ss_pred EEcccccCccccEEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCC
Q 004809 306 TVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNAS 385 (729)
Q Consensus 306 tVgAst~d~~~~~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~G 385 (729)
+|||.
T Consensus 257 sVgA~--------------------------------------------------------------------------- 261 (600)
T 3hjr_A 257 VVSAL--------------------------------------------------------------------------- 261 (600)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred EEeee---------------------------------------------------------------------------
Confidence 33332
Q ss_pred ceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCcc
Q 004809 386 VSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLK 465 (729)
Q Consensus 386 a~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilK 465 (729)
...+.++.||++|+..
T Consensus 262 ---------------------------------------------------------~~~g~~a~yS~~G~~v------- 277 (600)
T 3hjr_A 262 ---------------------------------------------------------NADGVRSSYSSVGSNI------- 277 (600)
T ss_dssp ---------------------------------------------------------CTTSSBCTTCCBCTTC-------
T ss_pred ---------------------------------------------------------cCCCCEeecccCCcce-------
Confidence 2334678999999876
Q ss_pred CcEEecCCCE-------Eee-cCCCCC---------cc----ccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCC
Q 004809 466 PDVMAPGDSI-------LAA-WPSNLA---------VS----QTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEW 524 (729)
Q Consensus 466 PDI~APG~~I-------~sa-~~~~~~---------~~----~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~ 524 (729)
+++|||..+ +.+ .++... .. ..........|..++|||||||||||++|||+|+||+|
T Consensus 278 -~~~apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~l 356 (600)
T 3hjr_A 278 -FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDL 356 (600)
T ss_dssp -CEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTS
T ss_pred -eeccCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCC
Confidence 788888753 211 111000 00 00111223568899999999999999999999999999
Q ss_pred CHHHHHHHHHhccccCCCCCCCccc--------------------CCCCCCCCCCCCCCccccCccCcCCCCc
Q 004809 525 SPAAIRSAIMTTSDSTDNTNSDIKD--------------------IGDDNKPATPIAMGAGHINPDKALDPGL 577 (729)
Q Consensus 525 sp~~Ik~~L~~TA~~~~~~~~~~~~--------------------~~~~~~~~~~~~~G~G~vn~~~Al~~gl 577 (729)
+++|||++|++||++++....|+.. .. ........||||+||+.+|++...
T Consensus 357 t~~~v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~--aG~~~s~~yGfG~vDA~~aV~~A~ 427 (600)
T 3hjr_A 357 SVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNA--AGMWFSPTYGFGLIDVNKALELAA 427 (600)
T ss_dssp CHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECT--TSCEEBTTTBTCBCCHHHHHHHHT
T ss_pred CHHHHHHHHHhhCccCCCCCCcccccccccccccccccccCCccccc--CCceEccccCCceecHHHHHHHhh
Confidence 9999999999999999877655321 11 111124579999999999987443
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9.2e-25 Score=248.33 Aligned_cols=96 Identities=22% Similarity=0.241 Sum_probs=77.4
Q ss_pred eeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH---cCCcEEEeecCCCCCCC---CCcHHHHHHHHHHhCCcEEEEe
Q 004809 213 ALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII---DGVDVLSMSLGLDGVDL---YEDPVAIATFAAIEKNIFVSTS 286 (729)
Q Consensus 213 ~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~---~gvdVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~vV~A 286 (729)
+.||||+|+|+.|++. ...++++++|++|+. ++++|||+|||...... +...+..++.+|..+||+||+|
T Consensus 274 ~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv~A 349 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAA 349 (552)
T ss_dssp HHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 4799999999999983 356789999999998 78999999999754221 1245666677888999999999
Q ss_pred cCCCCCCC--------CCcCCCCCceEEEccccc
Q 004809 287 AGNQGPFI--------GTLHNGIPWVMTVAAGTM 312 (729)
Q Consensus 287 AGN~G~~~--------~t~~~~~p~vitVgAst~ 312 (729)
|||+|... ...++.+||+++||+++.
T Consensus 350 sGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 350 AGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp CCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred cCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 99999643 345678899999999764
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.4e-22 Score=213.24 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=80.8
Q ss_pred eeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH-cCCcEEEeecCCCCC----CCCCcHHHHHHHHHHhCCcEEEEecC
Q 004809 214 LGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII-DGVDVLSMSLGLDGV----DLYEDPVAIATFAAIEKNIFVSTSAG 288 (729)
Q Consensus 214 ~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~-~gvdVIn~SlG~~~~----~~~~~~~~~a~~~a~~~Gi~vV~AAG 288 (729)
..+||+|+++.|++.+..+++.++++.+|+||++ ++++|||+|||.... ..+.+.+..++.+|..+||+||+|||
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 4579999999999987656788899999999997 899999999997431 12234566777788899999999999
Q ss_pred CCCCCC-------------CCcCCCCCceEEEcccccC
Q 004809 289 NQGPFI-------------GTLHNGIPWVMTVAAGTMD 313 (729)
Q Consensus 289 N~G~~~-------------~t~~~~~p~vitVgAst~d 313 (729)
|+|... ...++.+||+++||+++..
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 999653 2455788999999998653
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.2e-10 Score=125.67 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=63.3
Q ss_pred eeccCCCEEEEEEeecCCCCChHHHHHHHHHHH--HcCCcEEEeecCCCCCC---CCCcHHHHHHHHHHhCCcEEEEecC
Q 004809 214 LGTAPLARVAMYKALWNEGSFTSDIIAAIDQAI--IDGVDVLSMSLGLDGVD---LYEDPVAIATFAAIEKNIFVSTSAG 288 (729)
Q Consensus 214 ~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~--~~gvdVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAG 288 (729)
.++++...++.|-.... ......++..+++.. .+-++|||+|||..... .+...+...+..+..+||.|++|+|
T Consensus 262 ~a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASG 340 (544)
T 3edy_A 262 MSAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASG 340 (544)
T ss_dssp HHHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 35555666655533211 112234454444433 24589999999975422 2234455666678899999999999
Q ss_pred CCCCCC----------CCcCCCCCceEEEccccc
Q 004809 289 NQGPFI----------GTLHNGIPWVMTVAAGTM 312 (729)
Q Consensus 289 N~G~~~----------~t~~~~~p~vitVgAst~ 312 (729)
|+|... ...++..|||++||+++.
T Consensus 341 D~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 341 DSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp SSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 999643 245678999999999864
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.70 E-value=5.6e-09 Score=93.35 Aligned_cols=62 Identities=18% Similarity=0.083 Sum_probs=54.0
Q ss_pred ccccHHHHHHHHhcccccccccccccccccCCCceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEcCCccCC
Q 004809 9 AFRGQHGWYSATLQSVSGNVEANTNIFNNISSSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKP 83 (729)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~ 83 (729)
...+|++|+.+++.+... ..+++|+|++.||||+++|+++++++|+++|+|.+||||+.++.
T Consensus 52 ~~~~h~~~l~s~~~~~~~-------------~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 52 QSERTARRLQAQAARRGY-------------LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp HHHHHHHHHHHHHHHTTC-------------CCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhhccc-------------CCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 455799999999876222 57899999999999999999999999999999999999987653
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.2e-07 Score=87.59 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=71.8
Q ss_pred Cccccccc-cc-------CCceEEEEccCC-CchhhHHHHHHhCCceEEEEEecC-CCcee-e---cc-ccccEEEechh
Q 004809 350 ECLNLAEL-KK-------VGQKIVVCQDKN-DSLSNQVDNIQNASVSGGVFISDF-DGLEF-F---LQ-SSFPAVFMNSK 414 (729)
Q Consensus 350 ~c~~~~~~-~~-------~~gkiv~~~~g~-~~~~~~~~~~~~~Ga~g~i~~~~~-~~~~~-~---~~-~~~p~~~i~~~ 414 (729)
.|.+.... .. .+|||+|++||. |+|.+|..+++++||.++|++|+. .+... . .+ ..||+++|+..
T Consensus 85 GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~Is~~ 164 (194)
T 3icu_A 85 ACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNL 164 (194)
T ss_dssp CCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEECHH
T ss_pred CCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEECHH
Confidence 59877654 22 478999999999 999999999999999999999983 33221 1 12 57999999999
Q ss_pred hHHHHHHHHhhcCCcEEEEEecc
Q 004809 415 TGDILKDYIKIENNATATIQFQK 437 (729)
Q Consensus 415 ~g~~l~~~~~~~~~~~~~i~~~~ 437 (729)
+|+.|++++..+...+.+|.+..
T Consensus 165 ~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 165 KGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEECCC
Confidence 99999999999988888877653
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.27 E-value=7.5e-07 Score=74.24 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=43.4
Q ss_pred CCceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEcCCccCCCCCC
Q 004809 40 SSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKPHTTH 87 (729)
Q Consensus 40 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~~~ 87 (729)
..+++|+|++ |+||+++|+++++++|+++|+|.+||||+.++++++.
T Consensus 33 g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 33 GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSAT 79 (80)
T ss_dssp TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEECCC-
T ss_pred CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEeeec
Confidence 4689999998 9999999999999999999999999999999987764
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.14 E-value=9.5e-07 Score=79.86 Aligned_cols=44 Identities=23% Similarity=0.204 Sum_probs=40.8
Q ss_pred CCceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEcCCccCC
Q 004809 40 SSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVKP 83 (729)
Q Consensus 40 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~~ 83 (729)
..+++|+|++.||||+++|+++++++|+++|+|.+|++++.++.
T Consensus 80 g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 80 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 46899999999999999999999999999999999999987653
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=97.62 E-value=4.5e-05 Score=62.67 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=38.7
Q ss_pred CceEEEe-cceeeEEEEEeCHHHHHHhhcC--CCeEEEEcCCccCC
Q 004809 41 SKLLYTY-SHVLNGFSASLTPAELEALKSS--PGYISSIRDLPVKP 83 (729)
Q Consensus 41 ~~~~~~y-~~~~ng~s~~l~~~~~~~L~~~--p~V~~V~~~~~~~~ 83 (729)
.++.|.| ...|+||+++++++++++|+++ |.|.+||+|+.+++
T Consensus 30 g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 30 GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 4688999 4799999999999999999999 89999999987653
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0036 Score=68.69 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=65.8
Q ss_pred ceeeEEEcCCccccccc-ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCce---eec-c-ccccEEEechh
Q 004809 341 IDFPIVFMDECLNLAEL-KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLE---FFL-Q-SSFPAVFMNSK 414 (729)
Q Consensus 341 ~~~~lv~~~~c~~~~~~-~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~~-~-~~~p~~~i~~~ 414 (729)
..-++++.+.+...++. .+++|||||+.++.|.+..|..+++++||.|+|++++..+.. ... . ..+|.+.++..
T Consensus 93 v~a~lv~~~~G~~~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~ 172 (421)
T 2ek8_A 93 VTAELVYVGLGTTADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQ 172 (421)
T ss_dssp EEEEEEECTTCCTTTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHH
T ss_pred cceEEEECCCCChhhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHH
Confidence 34577776655333334 489999999999999999999999999999999999843211 111 2 67999999999
Q ss_pred hHHHHHHHHh
Q 004809 415 TGDILKDYIK 424 (729)
Q Consensus 415 ~g~~l~~~~~ 424 (729)
+++.|++++.
T Consensus 173 ~a~~L~~~l~ 182 (421)
T 2ek8_A 173 EGDALAANLR 182 (421)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999984
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0016 Score=51.48 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=39.1
Q ss_pred CCceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEcCCccC
Q 004809 40 SSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVK 82 (729)
Q Consensus 40 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 82 (729)
+.+++|+|. .+++++++|+++.++.|+++|+|++|++|...+
T Consensus 22 gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 22 GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp TCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred CCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 689999998 799999999999999999999999999997653
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0074 Score=69.38 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=64.8
Q ss_pred eeeEEEcCCcccccccc---cCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCc-------------------e
Q 004809 342 DFPIVFMDECLNLAELK---KVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGL-------------------E 399 (729)
Q Consensus 342 ~~~lv~~~~c~~~~~~~---~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-------------------~ 399 (729)
+-++||.+.+...++.. +++|||||+.+|.|.+..|..+++++||.|+|++++..+. .
T Consensus 109 ~g~lV~vg~G~~~D~~~l~vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp 188 (640)
T 3kas_A 109 TGKLVHANFGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDP 188 (640)
T ss_dssp EECEEECTTCCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCS
T ss_pred EEEEEEecCCChhhHHHhhcccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCC
Confidence 56889987655544443 7999999999999999999999999999999999973210 0
Q ss_pred eec----------------c-ccccEEEechhhHHHHHHHHh
Q 004809 400 FFL----------------Q-SSFPAVFMNSKTGDILKDYIK 424 (729)
Q Consensus 400 ~~~----------------~-~~~p~~~i~~~~g~~l~~~~~ 424 (729)
..+ . ..+|++.|+..+++.|++.+.
T Consensus 189 ~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 189 YTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 000 1 358999999999999987653
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=95.91 E-value=0.013 Score=68.01 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=64.8
Q ss_pred ceeeEEEcCCccccccc-------ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec-C----CC-----------
Q 004809 341 IDFPIVFMDECLNLAEL-------KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD-F----DG----------- 397 (729)
Q Consensus 341 ~~~~lv~~~~c~~~~~~-------~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~-~----~~----------- 397 (729)
.+-++||...+...++. .+++|||+|+++|.|.+.+|..+++++||.|+|++++ . .|
T Consensus 127 v~g~lV~v~~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p 206 (707)
T 3fed_A 127 PEGDLVYVNYARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLP 206 (707)
T ss_dssp CEECEEECTTCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCC
T ss_pred eEEEEEEecCCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCC
Confidence 35688887654443332 3699999999999999999999999999999999986 1 01
Q ss_pred ----------------ceeec-----------------c-ccccEEEechhhHHHHHHHHhh
Q 004809 398 ----------------LEFFL-----------------Q-SSFPAVFMNSKTGDILKDYIKI 425 (729)
Q Consensus 398 ----------------~~~~~-----------------~-~~~p~~~i~~~~g~~l~~~~~~ 425 (729)
+++.+ . ..||++.|+..+++.|++.+..
T Consensus 207 ~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 207 GTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp TTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 11100 1 3689999999999999988753
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.055 Score=59.65 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=67.0
Q ss_pred CceeeEEEcCC--cccccccccCCceEEEEccCCCc---------hhhH----HHHHHhCCceEEEEEecCCCc-e----
Q 004809 340 LIDFPIVFMDE--CLNLAELKKVGQKIVVCQDKNDS---------LSNQ----VDNIQNASVSGGVFISDFDGL-E---- 399 (729)
Q Consensus 340 ~~~~~lv~~~~--c~~~~~~~~~~gkiv~~~~g~~~---------~~~~----~~~~~~~Ga~g~i~~~~~~~~-~---- 399 (729)
..+-++|+... |.......+++|||||+.++.|. +..| ..+++++||+|+|++++..+. .
T Consensus 105 ~vta~lV~v~~~~~~~~~~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~t 184 (444)
T 3iib_A 105 GLSATIVRFDTLQDLQNAEAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHT 184 (444)
T ss_dssp CEEEEEEEESSHHHHHTSCTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCC
T ss_pred CeEEEEEecCCHHHHhhccccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccC
Confidence 45678888653 32111116899999999998774 3344 356899999999999972211 0
Q ss_pred ---eec-c-ccccEEEechhhHHHHHHHHhhcCCcEEEEEec
Q 004809 400 ---FFL-Q-SSFPAVFMNSKTGDILKDYIKIENNATATIQFQ 436 (729)
Q Consensus 400 ---~~~-~-~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 436 (729)
... . ..+|++.|+..+++.|.+.+..+...+.++...
T Consensus 185 g~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 185 GMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp CBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEE
T ss_pred CccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEe
Confidence 111 2 579999999999999999998766555555443
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.19 Score=44.73 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=52.2
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCCCCCCeeEEEEEEEEEcCCceE
Q 004809 634 SVQEFQRTVTNVGEGVSTYTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEETVVAFCYLSWIETGGKHV 713 (729)
Q Consensus 634 ~~~~~~rtvtnvg~~~~tY~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~l~~~~~~~~~~ 713 (729)
.+.+.+.+|+|+|+.+..|+.... + -.++.|...++. +|++..++|+|.+... +.+.+.|.+.- ++...
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~--~--~F~i~P~~g~L~-pg~~~~i~V~F~P~~~-----g~~~~~l~v~~-~~g~~ 109 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTC--R--PFSIEPAIGTLN-VGESMQLEVEFEPQSV-----GDHSGRLIVCY-DTGEK 109 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECC--T--TEEEESSEEEEC-TTCEEEEEEEECCSSS-----BCCCCBCEEEE-SSSCE
T ss_pred CeEEEEEEEEECCCCCEEEEEecC--C--CeEEECCcCEEC-CCCEEEEEEEEEcCCC-----ccEEEEEEEEE-CCCCE
Confidence 467777899999999888887653 2 366789999887 8999999999987631 14556565542 33344
Q ss_pred EEEEE
Q 004809 714 VKSPI 718 (729)
Q Consensus 714 v~~P~ 718 (729)
+.+++
T Consensus 110 ~~v~L 114 (122)
T 2ys4_A 110 VFVSL 114 (122)
T ss_dssp ECCEE
T ss_pred EEEEE
Confidence 44443
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.40 E-value=0.29 Score=60.03 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=23.0
Q ss_pred CCCCCCcEEEEEcccCCCCCCCCCC
Q 004809 104 SKFGKDIIIGVVDTGVWPESESYND 128 (729)
Q Consensus 104 ~~~G~gvvVgVIDtGid~~Hp~f~~ 128 (729)
.+.|+||+|||+|||||+.+|-|.-
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq~ 56 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLET 56 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred CCCCCccEEEEEeCCCCCCCCccee
Confidence 5789999999999999999999873
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 729 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 9e-39 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 3e-14 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 6e-04 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 5e-14 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 7e-14 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-05 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 3e-13 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 7e-05 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 2e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-04 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 4e-12 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 1e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 0.001 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 2e-09 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 4e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-07 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 2e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 0.002 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 3e-04 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 147 bits (370), Expect = 9e-39
Identities = 82/476 (17%), Positives = 148/476 (31%), Gaps = 78/476 (16%)
Query: 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKG 166
+ I ++D+G ++ L + G G
Sbjct: 21 AGNRTICIIDSGYDRS--------------------------HNDLNANNVTGTNNSGTG 54
Query: 167 LLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMY- 225
P + N HGTH + T A A+ G G P ++
Sbjct: 55 ----------NWYQPGNNNAHGTHVAGTIAA----IANNEGVV-----GVMPNQNANIHI 95
Query: 226 -KALWNEGSFTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVS 284
K G S + A ++ +++ L G A + +
Sbjct: 96 VKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSL-GGSGSTTTERNALNTHYNNGVLLI 154
Query: 285 TSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSSLIDFP 344
+AGN G + VM+VAA + + A + ++G ++ +
Sbjct: 155 AAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEG 214
Query: 345 IVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQS 404
+ + + +V S ++ NAS +G + +G F +
Sbjct: 215 RLA---DITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGN 271
Query: 405 SFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVL 464
+ + + G+ Y +I + + +S P + PF++
Sbjct: 272 MANKICLVERVGNQGSSYPEINSTKACK--------TAGAKGIIVYSNSALPGLQNPFLV 323
Query: 465 --KPDVMAPGDSILAAWP----SNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLR 518
D+ P S+ A + L S T S ++ +GTSMA P +G+A L+
Sbjct: 324 DANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVW 383
Query: 519 GAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574
HPE S + +R+A+ T+D D G G IN A
Sbjct: 384 SYHPECSASQVRAALNATADDLSVAGRD-------------NQTGYGMINAVAAKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 73.9 bits (180), Expect = 3e-14
Identities = 34/149 (22%), Positives = 51/149 (34%), Gaps = 22/149 (14%)
Query: 447 SVASYSSRGP----SISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSN-----F 497
VA+ G + V APG +IL+ P ++ + +
Sbjct: 315 QVAALDYYGGTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTY 374
Query: 498 NLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPA 557
+ GTSMA P G+ A+L P P IR + T+ D G D+
Sbjct: 375 DYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAF-------DFNGNGWDHD-- 425
Query: 558 TPIAMGAGHINPDKALDPGLIYDATTEDY 586
G G + D AL L E++
Sbjct: 426 ----TGYGLVKLDAALQGPLPTQGGVEEF 450
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 40.8 bits (94), Expect = 6e-04
Identities = 43/218 (19%), Positives = 62/218 (28%), Gaps = 54/218 (24%)
Query: 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
W + G +II+ VVDTGV + + E +GT
Sbjct: 147 LWEEAS-GTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDEELPAGTD------------ 193
Query: 160 ARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPL 219
GTH + T A +G AP
Sbjct: 194 ---------------------SSYGGSAGTHVAGTIAAK---------KDGKGIVGVAPG 223
Query: 220 ARVAMYKALWNEGSFT-------SDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIA 272
A++ + + A I A G V++ S G G + A
Sbjct: 224 AKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYS---YTMKEA 280
Query: 273 TFAAIEKNIFVSTSAGNQGPFIG-TLHNGIPWVMTVAA 309
A+E + + SAGN G P V+ VAA
Sbjct: 281 FDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAA 318
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 71.4 bits (173), Expect = 5e-14
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 19/104 (18%)
Query: 465 KPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEW 524
++ APG S+ + W + +N SGTSMA P +G+AA + +P
Sbjct: 224 DIEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 525 SPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHIN 568
S +RS + + S D IGDD A G G
Sbjct: 271 SNTQLRSNLQERAKSVDIKGGYGAAIGDDY------ASGFGFAR 308
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 70.3 bits (171), Expect = 7e-14
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 37/128 (28%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
AS+SS GP + DVMAPG SI + P N + +GTSMA
Sbjct: 185 QRASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMA 223
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGH 566
P AG AAL+ HP W+ +RS++ T+ +GD G G
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTT----------KLGDSFY------YGKGL 267
Query: 567 INPDKALD 574
IN A
Sbjct: 268 INVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 44.9 bits (105), Expect = 2e-05
Identities = 44/226 (19%), Positives = 67/226 (29%), Gaps = 50/226 (22%)
Query: 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
G ++ + V+D+G+ G G S
Sbjct: 16 LHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG--------------GASMVPS-------- 53
Query: 160 ARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPL 219
N +D N HGTH V LG AP
Sbjct: 54 -----------------ETNPFQDNNSHGTH---------VAGTVAALNNSIGVLGVAPS 87
Query: 220 ARVAMYKALWNEGS-FTSDIIAAIDQAIIDGVDVLSMSLG-LDGVDLYEDPVAIATFAAI 277
A + K L +GS S II I+ AI + +DV++MSLG G + V A + +
Sbjct: 88 ASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVDKAVASGV 147
Query: 278 EKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLG 323
+ P V+ V A + + ++G
Sbjct: 148 VVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVG 193
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 68.4 bits (166), Expect = 3e-13
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 30/128 (23%)
Query: 447 SVASYSSRG-PSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSM 505
+V + S + + +VMAPG + + +P+N + +GTSM
Sbjct: 175 AVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTN-------------TYATLNGTSM 221
Query: 506 ACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAG 565
A P AG AAL+ HP S + +R+ + +T+ +G G G
Sbjct: 222 ASPHVAGAAALILSKHPNLSASQVRNRLSSTAT----------YLGSSFY------YGKG 265
Query: 566 HINPDKAL 573
IN + A
Sbjct: 266 LINVEAAA 273
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 43.0 bits (100), Expect = 7e-05
Identities = 47/235 (20%), Positives = 71/235 (30%), Gaps = 57/235 (24%)
Query: 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
G ++ + V+DTG+ N G G
Sbjct: 16 VQAQGFKGANVKVAVLDTGIQASHPDLNVVG----------------------------G 47
Query: 160 ARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPL 219
A F D NGHGTH + T A P
Sbjct: 48 ASFVAGE------------AYNTDGNGHGTHVAGTVAALDNTTGVLGVA---------PS 86
Query: 220 ARVAMYKALWNEGS-FTSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIE 278
+ K L + GS S I++ I+ A +G+DV++MS G + A A
Sbjct: 87 VSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMS---LGGASGSTAMKQAVDNAYA 143
Query: 279 KNIFVSTSAGNQGPFIGT----LHNGIPWVMTVAAGTMDRELGATLTLGNGNTVT 329
+ + V +AGN G T V+ V A + + ++G V
Sbjct: 144 RGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVM 198
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 66.1 bits (160), Expect = 2e-12
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 37/127 (29%)
Query: 447 SVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMA 506
+ AS+S G + D++APG ++ + +P + + +GTSMA
Sbjct: 179 NRASFSQYGAGL--------DIVAPGVNVQSTYPGS-------------TYASLNGTSMA 217
Query: 507 CPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGH 566
P AG AAL++ +P WS IR+ + T+ +G N G+G
Sbjct: 218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTAT----------SLGSTNL------YGSGL 261
Query: 567 INPDKAL 573
+N + A
Sbjct: 262 VNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 41.8 bits (97), Expect = 1e-04
Identities = 43/231 (18%), Positives = 70/231 (30%), Gaps = 54/231 (23%)
Query: 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
A G + + V+DTG+ + GG + +P
Sbjct: 16 AHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGE---------------------- 53
Query: 160 ARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPL 219
S +D NGHGTH + T A P
Sbjct: 54 -------------------PSTQDGNGHGTHVAGTIAALNNSIGVLGVA---------PS 85
Query: 220 ARVAMYKALWNEGSFTS-DIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIE 278
A + K L GS + I ++ A +G+ V ++SLG + A +A
Sbjct: 86 AELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATS 142
Query: 279 KNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVT 329
+ + V ++GN G + M V A + + G G +
Sbjct: 143 RGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIV 193
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.0 bits (159), Expect = 4e-12
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 487 QTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSD 546
+ L +GTS + P AAGI AL A+ + ++ ++ TS D
Sbjct: 243 IVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADD 302
Query: 547 IKDIGDDNKPATPIAMGAGHINPDKALD 574
G K + + G G ++ +
Sbjct: 303 WATNGVGRKVSH--SYGYGLLDAGAMVA 328
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 64.1 bits (154), Expect = 1e-11
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 459 SCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLR 518
+ +KPDVMAPG IL+A S S + S + GTSMA P AG A LR
Sbjct: 211 TKDGRIKPDVMAPGTFILSARSSLAPDSSFWAN-HDSKYAYMGGTSMATPIVAGNVAQLR 269
Query: 519 GAHPE-----WSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKAL 573
+ P+ +++A++ + DI + G G + DK+L
Sbjct: 270 EHFVKNRGITPKPSLLKAALIAGAA-------DIGLGYPNGN------QGWGRVTLDKSL 316
Query: 574 D 574
+
Sbjct: 317 N 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 39.1 bits (89), Expect = 0.001
Identities = 37/210 (17%), Positives = 63/210 (30%), Gaps = 47/210 (22%)
Query: 107 GKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKG 166
G+ I+ V DTG+ + ++G+ + +
Sbjct: 21 GQGQIVAVADTGLDTGRNDSSMH------EAFRGKITALYALGRT--------------- 59
Query: 167 LLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYK 226
N+ D NGHGTH A T G AP A +
Sbjct: 60 ------------NNANDTNGHGTHV-----------AGSVLGNGSTNKGMAPQANLVFQS 96
Query: 227 ALWNEGSF---TSDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFV 283
+ + G S++ QA G + + S G Y + ++ +
Sbjct: 97 IMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTI 156
Query: 284 STSAGNQGPFIGTLHNGIPWVMTVAAGTMD 313
+AGN+GP GT+ + G +
Sbjct: 157 LFAAGNEGPNGGTISAPGTAKNAITVGATE 186
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.5 bits (137), Expect = 2e-09
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 495 SNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDN 554
N GTS A P AAG+ LL A+P + ++ + ++ +
Sbjct: 255 RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMG 314
Query: 555 KPATPIAMGAGHINPDKALD 574
K + G G I+ K ++
Sbjct: 315 KKYSHR-YGFGKIDAHKLIE 333
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 53.2 bits (126), Expect = 4e-08
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 496 NFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTN 544
+ SGTSMA P AG+AA L + +A R I T++ D +N
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSN 263
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 50.7 bits (120), Expect = 2e-07
Identities = 51/211 (24%), Positives = 66/211 (31%), Gaps = 50/211 (23%)
Query: 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIG 159
AW V+K I V+DTGV +
Sbjct: 23 AWDVTKGSSGQEIAVIDTGVDYTHPDLD-------------------------------- 50
Query: 160 ARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPL 219
G + K P D N HGTH + AA G A
Sbjct: 51 ------GKVIKGYDFVDNDYDPMDLNNHGTHVAGIAAAETNNATGIAGMAPN-------- 96
Query: 220 ARVAMYKALWNEGSFT-SDIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIE 278
R+ +AL GS T SDI AI A G +V+++S G D + + A A
Sbjct: 97 TRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLS---LGCDCHTTTLENAVNYAWN 153
Query: 279 KNIFVSTSAGNQGPFIGTLHNGIPWVMTVAA 309
K V +AGN G V+ V A
Sbjct: 154 KGSVVVAAAGNNGSSTTFEPASYENVIAVGA 184
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 47.6 bits (112), Expect = 2e-06
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 17/75 (22%)
Query: 500 QSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATP 559
SGTSMA P AG+AALL + IR AI T+D T +
Sbjct: 222 MSGTSMASPHVAGLAALLA--SQGRNNIEIRQAIEQTADKISGTGTY------------- 266
Query: 560 IAMGAGHINPDKALD 574
G IN A+
Sbjct: 267 --FKYGRINSYNAVT 279
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 17/75 (22%)
Query: 500 QSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATP 559
SGTSMA P AG+A LL S + IR+AI T+D T +
Sbjct: 221 LSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISGTGTYW------------ 266
Query: 560 IAMGAGHINPDKALD 574
G +N KA+
Sbjct: 267 ---AKGRVNAYKAVQ 278
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 38.5 bits (88), Expect = 0.002
Identities = 42/210 (20%), Positives = 65/210 (30%), Gaps = 48/210 (22%)
Query: 99 GAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLI 158
AW +++ G I +VDTGV
Sbjct: 22 QAWDIAE-GSGAKIAIVDTGVQSNHPDL-------------------------------- 48
Query: 159 GARFFNKGLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAP 218
G + ++P++ NGHGTH + AA GTAP
Sbjct: 49 ------AGKVVGGWDFVDNDSTPQNGNGHGTHCAGIAA--------AVTNNSTGIAGTAP 94
Query: 219 LARVAMYKALWNEGSFTS-DIIAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAI 277
A + + L N GS T + I A G V+S+SLG + +
Sbjct: 95 KASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVNYAWNKG 154
Query: 278 EKNIFVSTSAGNQGPFIGTLHNGIPWVMTV 307
+ + +AGN P ++ V +
Sbjct: 155 SVVVAAAGNAGNTAPNYPAYYSNAIAVAST 184
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 29/172 (16%), Positives = 47/172 (27%), Gaps = 16/172 (9%)
Query: 179 NSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDI 238
+G + G E A AP A++A+Y A + F + I
Sbjct: 56 VVSVSVDGATNQPTGDPNGPDGEVELDIEVAG----ALAPGAKIAVYFAPNTDAGFLNAI 111
Query: 239 IAAIDQAIIDGVDVLSMSLGLD---GVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG 295
A+ ++S+S G + A A + V +AG+ G G
Sbjct: 112 TTAVHDP-THKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDG 170
Query: 296 TLHNGI--------PWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPGNSS 339
P+V+ + G N G S
Sbjct: 171 EQDGLYHVDFPAASPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVS 222
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.95 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 97.81 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 97.33 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 97.32 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 96.24 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 95.82 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=1.6e-50 Score=470.65 Aligned_cols=341 Identities=24% Similarity=0.228 Sum_probs=249.9
Q ss_pred CceEEEecceeeEEEEEeCHHHHH----H--hhcCCCeEEEEcCCccCCCCC----CC----------------------
Q 004809 41 SKLLYTYSHVLNGFSASLTPAELE----A--LKSSPGYISSIRDLPVKPHTT----HS---------------------- 88 (729)
Q Consensus 41 ~~~~~~y~~~~ng~s~~l~~~~~~----~--L~~~p~V~~V~~~~~~~~~~~----~s---------------------- 88 (729)
.++++.+. .++.+.++++..+++ . +..+|+|++|+|+...++... ..
T Consensus 53 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (671)
T d1r6va_ 53 GKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEEL 131 (671)
T ss_dssp CEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTT
T ss_pred CEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCccc
Confidence 46677776 567788887653332 2 235899999999865543210 00
Q ss_pred -CcccCCCCC--CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccc
Q 004809 89 -SQFLGLNPK--SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNK 165 (729)
Q Consensus 89 -~~~~gl~~~--~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~ 165 (729)
...|+++.+ ..+|.+..+|+||+|||||||||++||+|.++ ++..+++..
T Consensus 132 ~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~~---------------------------~~~~~~~~~ 184 (671)
T d1r6va_ 132 SNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQ---------------------------VIAGYRPAF 184 (671)
T ss_dssp GGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSGGGTTT---------------------------BCCEEEGGG
T ss_pred cccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCChhhcCC---------------------------cccCccccc
Confidence 011333222 22333457899999999999999999999864 122222221
Q ss_pred cccccCCCCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecC------CC-CChHHH
Q 004809 166 GLLAKNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWN------EG-SFTSDI 238 (729)
Q Consensus 166 ~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~------~g-~~~~~i 238 (729)
+.+. ....++.|..||||||||||||+... .| +.||||+|+|+++|++++ .+ ...+.+
T Consensus 185 ~~~~------~~~~~~~d~~gHGT~VAGiiaa~~~~----~g-----~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i 249 (671)
T d1r6va_ 185 DEEL------PAGTDSSYGGSAGTHVAGTIAAKKDG----KG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYV 249 (671)
T ss_dssp TEEE------CTTCBCCTTCSHHHHHHHHHHCCCSS----SS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHH
T ss_pred cCCC------CCCCcCcccCCCCccccceeeeeccc----cc-----eeeecCcceEEEEEecccccccCCCCcccHHHH
Confidence 1110 01123567889999999999997421 12 379999999999999964 23 567789
Q ss_pred HHHHHHHHHcCCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEEcccccCcccc
Q 004809 239 IAAIDQAIIDGVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI-GTLHNGIPWVMTVAAGTMDRELG 317 (729)
Q Consensus 239 l~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~t~~~~~p~vitVgAst~d~~~~ 317 (729)
++||+||+++|++|||||||+.. ....+..++..|.++|+++|+||||++... ...++..|++|+|||++.+..
T Consensus 250 ~~ai~~a~~~g~~Vin~S~g~~~---~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~~-- 324 (671)
T d1r6va_ 250 AAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG-- 324 (671)
T ss_dssp HHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT--
T ss_pred HHHHHHHHhCCCcEEeccccccc---CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCCC--
Confidence 99999999999999999999743 345677778889999999999999998654 456788899999999642210
Q ss_pred EEEEeCCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCC
Q 004809 318 ATLTLGNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDG 397 (729)
Q Consensus 318 ~~~~l~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 397 (729)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T d1r6va_ 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEe
Q 004809 398 LEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILA 477 (729)
Q Consensus 398 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~s 477 (729)
...++.||+|||.. ||+|||++|++
T Consensus 325 -----------------------------------------------~~~~a~fS~~g~~~--------dv~APG~~i~s 349 (671)
T d1r6va_ 325 -----------------------------------------------TFRVAGFSSRSDGV--------SVGAPGVTILS 349 (671)
T ss_dssp -----------------------------------------------EEEECSSSCCCTTE--------EEEEECSSEEE
T ss_pred -----------------------------------------------cceeeeccCCCCCc--------eEEecCCCeEe
Confidence 11568999999864 99999999999
Q ss_pred ecCCCCCcccc-----CCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCC
Q 004809 478 AWPSNLAVSQT-----NSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGD 552 (729)
Q Consensus 478 a~~~~~~~~~~-----~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~ 552 (729)
+++........ ......+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++...
T Consensus 350 t~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~--------- 420 (671)
T d1r6va_ 350 TVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN--------- 420 (671)
T ss_dssp ECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS---------
T ss_pred ecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC---------
Confidence 98754321111 1112346899999999999999999999999999999999999999999987432
Q ss_pred CCCCCCCCCCCccccCccCcCCCCc
Q 004809 553 DNKPATPIAMGAGHINPDKALDPGL 577 (729)
Q Consensus 553 ~~~~~~~~~~G~G~vn~~~Al~~gl 577 (729)
..+..||||+||+.+|++..+
T Consensus 421 ----g~~~~~G~G~vna~~Av~~~~ 441 (671)
T d1r6va_ 421 ----GWDHDTGYGLVKLDAALQGPL 441 (671)
T ss_dssp ----SCBTTTBTCBCCHHHHHHCCC
T ss_pred ----CCCCCcccChhCHHHHhhCcC
Confidence 346789999999999987544
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=4.3e-50 Score=446.39 Aligned_cols=361 Identities=23% Similarity=0.296 Sum_probs=237.9
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCC
Q 004809 100 AWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMN 179 (729)
Q Consensus 100 ~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 179 (729)
+|. .+|+||+|||||||||++||+|.++ ++..+++... .+..
T Consensus 16 ~~~--~~G~gv~VaviDtGid~~Hp~~~~~---------------------------~~~~~~~~~~---------~~~~ 57 (435)
T d1v6ca_ 16 LSD--SQAGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT---------GNWY 57 (435)
T ss_dssp SCC--TTGGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS---------CCTT
T ss_pred hhh--cCCCCcEEEEEcCCCCCCChhhccC---------------------------eeeeeccCCC---------CCCC
Confidence 554 4799999999999999999999864 2222222211 1123
Q ss_pred CCCCCCCChhHHHHHhcccCcCCCccccccccceeeccC--CCEEEEEEeecCCC-CChHHHHHHHHHHHH-cCCcEEEe
Q 004809 180 SPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAP--LARVAMYKALWNEG-SFTSDIIAAIDQAII-DGVDVLSM 255 (729)
Q Consensus 180 ~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~g-~~~~~il~ai~~A~~-~gvdVIn~ 255 (729)
.+.|++||||||||||||+... .| +.|||| +++|+.+|++.... +...++++||+++++ .|++|||+
T Consensus 58 ~~~d~~gHGThvAgiiag~~~~----~g-----~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~ 128 (435)
T d1v6ca_ 58 QPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTM 128 (435)
T ss_dssp CCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCCCcHHHHHHHHhccCCC----Cc-----eEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEec
Confidence 5778899999999999997421 22 379999 89999999998764 677789999999996 59999999
Q ss_pred ecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccE------EEE--------
Q 004809 256 SLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGA------TLT-------- 321 (729)
Q Consensus 256 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~------~~~-------- 321 (729)
|||... ....+..++..+.++|+++|+||||+|+...+.++..+++|+||+++.+..... .+.
T Consensus 129 S~g~~~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i 205 (435)
T d1v6ca_ 129 SLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAI 205 (435)
T ss_dssp CCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSE
T ss_pred ccCCCC---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccce
Confidence 999754 344556677788999999999999999988888899999999999876543211 010
Q ss_pred ---eCCCcEEE-eeeecCCCC---CCceeeEEEcCC------------------cc--ccccc-ccCCceEEEEccCCC-
Q 004809 322 ---LGNGNTVT-GLSLYPGNS---SLIDFPIVFMDE------------------CL--NLAEL-KKVGQKIVVCQDKND- 372 (729)
Q Consensus 322 ---l~~g~~~~-g~~~~~~~~---~~~~~~lv~~~~------------------c~--~~~~~-~~~~gkiv~~~~g~~- 372 (729)
+..+.... ......... .......+.... |. ..... .++.+++.++.+...
T Consensus 206 ~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (435)
T d1v6ca_ 206 LSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQ 285 (435)
T ss_dssp EEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCS
T ss_pred eeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccCCc
Confidence 11111000 000000000 000000000010 11 11111 445666666655322
Q ss_pred ----chhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCce
Q 004809 373 ----SLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSV 448 (729)
Q Consensus 373 ----~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 448 (729)
....+.......++.+++.+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 311 (435)
T d1v6ca_ 286 GSSYPEINSTKACKTAGAKGIIVYSN------------------------------------------------------ 311 (435)
T ss_dssp SSSCTHHHHHHHHHHTTCSEEEEECC------------------------------------------------------
T ss_pred cccceeeeeceeecccCCcceEEecc------------------------------------------------------
Confidence 2333444445555555444433
Q ss_pred ecccCCCCCCCCC--CCccCcEEecCCCEEeecCCCCCc----cccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCC
Q 004809 449 ASYSSRGPSISCP--FVLKPDVMAPGDSILAAWPSNLAV----SQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHP 522 (729)
Q Consensus 449 a~FSS~GP~~~~~--~ilKPDI~APG~~I~sa~~~~~~~----~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P 522 (729)
+.+|....+ ...||||.+||..|.+++...... ...........|..|||||||||||||++|||||+||
T Consensus 312 ----~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P 387 (435)
T d1v6ca_ 312 ----SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHP 387 (435)
T ss_dssp ----SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCT
T ss_pred ----CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCC
Confidence 223322211 226899999998887653211000 0000111235799999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCCCCccccCChhhHHHHhhh
Q 004809 523 EWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALDPGLIYDATTEDYVSLLCA 592 (729)
Q Consensus 523 ~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~glv~d~~~~dy~~~lc~ 592 (729)
+|+|++||++||+||+++. .++.+++||+|+||+.+|++ ||...|.
T Consensus 388 ~~s~~~vk~~L~~TA~~~~-------------~~~~~~~~G~G~vn~~~A~~-----------~l~~~~~ 433 (435)
T d1v6ca_ 388 ECSASQVRAALNATADDLS-------------VAGRDNQTGYGMINAVAAKA-----------YLDESCT 433 (435)
T ss_dssp TSCHHHHHHHHHHHSBCCS-------------SSSCBTTTBTCBCCHHHHHH-----------HHHHCTT
T ss_pred CCCHHHHHHHHHhhCcccC-------------CCCCCCCcccceecHHHHHH-----------HHHhcCC
Confidence 9999999999999999773 23467899999999999964 8877775
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=1.3e-47 Score=401.15 Aligned_cols=264 Identities=33% Similarity=0.370 Sum_probs=210.7
Q ss_pred cCCCCC--CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccc
Q 004809 92 LGLNPK--SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLA 169 (729)
Q Consensus 92 ~gl~~~--~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~ 169 (729)
|+++.+ +.+|+++++|+||+|||||||||++||+|.++ ++..++|...
T Consensus 13 w~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~---------------------------~~~~~~~~~~--- 62 (280)
T d1dbia_ 13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDN--- 62 (280)
T ss_dssp CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTT---
T ss_pred cChhhCCHHHHHhccCCCCCeEEEEEccCcCCCChhhcCC---------------------------eeecccccCC---
Confidence 455443 56999999999999999999999999999754 3333333321
Q ss_pred cCCCCccCCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc
Q 004809 170 KNPTITIAMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID 248 (729)
Q Consensus 170 ~~~~~~~~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~ 248 (729)
...+.|..+|||||||+|+|..... +.+.||||+|+|+.+|+++..+ +...++++||+++++.
T Consensus 63 --------~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~ 126 (280)
T d1dbia_ 63 --------DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADS 126 (280)
T ss_dssp --------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHT
T ss_pred --------CCccccccccccceeEeeeccccCC--------CceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHc
Confidence 1246788999999999999875322 2248999999999999998766 7889999999999999
Q ss_pred CCcEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEE
Q 004809 249 GVDVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTV 328 (729)
Q Consensus 249 gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~ 328 (729)
|++|||+|||... ..+....+...+.++|+++|+||||+|......+...+++|+|||.+.
T Consensus 127 g~~iin~S~g~~~---~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~---------------- 187 (280)
T d1dbia_ 127 GAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ---------------- 187 (280)
T ss_dssp TCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT----------------
T ss_pred CCcEeeccccccc---cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC----------------
Confidence 9999999999743 334555666788899999999999999877777888999999998432
Q ss_pred EeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccE
Q 004809 329 TGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPA 408 (729)
Q Consensus 329 ~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~ 408 (729)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCcccc
Q 004809 409 VFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQT 488 (729)
Q Consensus 409 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~ 488 (729)
.+.++.||++||.. |++|||.+|++....
T Consensus 188 ------------------------------------~~~~a~~S~~g~~~--------d~~apg~~i~~~~~~------- 216 (280)
T d1dbia_ 188 ------------------------------------YDRLASFSNYGTWV--------DVVAPGVDIVSTITG------- 216 (280)
T ss_dssp ------------------------------------TSCBCTTBCCSTTC--------CEEEECSSEEEEETT-------
T ss_pred ------------------------------------CCCcCCcCCCCCcc--------cccCCccceeccccC-------
Confidence 22578999999854 999999999998874
Q ss_pred CCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccC
Q 004809 489 NSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHIN 568 (729)
Q Consensus 489 ~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn 568 (729)
..|..++|||||||+|||++|||+|. .+++.+||++|++||+++.. .+..||+|+||
T Consensus 217 ------~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~---------------~~~~~G~G~ln 273 (280)
T d1dbia_ 217 ------NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG---------------TGTYFKYGRIN 273 (280)
T ss_dssp ------TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT---------------BTTTBSSEECC
T ss_pred ------cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC---------------CCCcCCCCeEc
Confidence 47899999999999999999999995 55899999999999987632 34579999999
Q ss_pred ccCcCC
Q 004809 569 PDKALD 574 (729)
Q Consensus 569 ~~~Al~ 574 (729)
+.+||+
T Consensus 274 ~~~Al~ 279 (280)
T d1dbia_ 274 SYNAVT 279 (280)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 999975
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=3.7e-47 Score=396.59 Aligned_cols=256 Identities=31% Similarity=0.428 Sum_probs=211.5
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|.++++|+||+|||||||||++||+|+. ...++|..+.
T Consensus 14 ~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~-----------------------------~~~~~~~~~~---------- 54 (274)
T d1r0re_ 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLNV-----------------------------VGGASFVAGE---------- 54 (274)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECSTTC----------
T ss_pred HHHHHcCCCCCCeEEEEECCCCCCCChhhcc-----------------------------cCCccccCCC----------
Confidence 4589999999999999999999999999952 2223333221
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEee
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMS 256 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~S 256 (729)
..+.|..+|||||||||++..... | ..|+||+|+|+.+|+++..+ +..++++++++++.+++++|||+|
T Consensus 55 -~~~~d~~gHGT~vAgii~~~~~~~----~-----~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S 124 (274)
T d1r0re_ 55 -AYNTDGNGHGTHVAGTVAALDNTT----G-----VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMS 124 (274)
T ss_dssp -CTTCCSSSHHHHHHHHHHCCSSSS----B-----CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEEC
T ss_pred -CCCCCccccccccccccccccccc----c-----ccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceeccc
Confidence 235678899999999999874321 1 37999999999999998877 678899999999999999999999
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC----CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeee
Q 004809 257 LGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI----GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLS 332 (729)
Q Consensus 257 lG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~ 332 (729)
||... ..........++.++++++|+||||+|... ...+...+++|+|||.+.+
T Consensus 125 ~~~~~---~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~------------------- 182 (274)
T d1r0re_ 125 LGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN------------------- 182 (274)
T ss_dssp EEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT-------------------
T ss_pred ccccc---chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC-------------------
Confidence 99753 234455556688899999999999998643 2345677899999985422
Q ss_pred ecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEec
Q 004809 333 LYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMN 412 (729)
Q Consensus 333 ~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 412 (729)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCC
Q 004809 413 SKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKL 492 (729)
Q Consensus 413 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~ 492 (729)
+.++.||++|| ||||+|||++|+++.+.
T Consensus 183 ---------------------------------~~~~~~s~~g~--------~~di~APG~~i~~~~~~----------- 210 (274)
T d1r0re_ 183 ---------------------------------SNRASFSSVGA--------ELEVMAPGAGVYSTYPT----------- 210 (274)
T ss_dssp ---------------------------------SCBCTTCCCST--------TEEEEEECSSEEEEETT-----------
T ss_pred ---------------------------------CCcccccCCCC--------CEEEEecCCCcccccCC-----------
Confidence 25688999997 56999999999999874
Q ss_pred CCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCc
Q 004809 493 SFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKA 572 (729)
Q Consensus 493 ~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 572 (729)
+.|..++|||||||+|||++|||+|++|+|++++||++|++||+++. +++.||+|+||+.+|
T Consensus 211 --~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~----------------~~~~~G~G~ln~~~A 272 (274)
T d1r0re_ 211 --NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG----------------SSFYYGKGLINVEAA 272 (274)
T ss_dssp --TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS----------------CHHHHTTCBCCHHHH
T ss_pred --CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC----------------CCCceEcCeecHHHh
Confidence 47899999999999999999999999999999999999999998753 245799999999999
Q ss_pred CC
Q 004809 573 LD 574 (729)
Q Consensus 573 l~ 574 (729)
++
T Consensus 273 ~~ 274 (274)
T d1r0re_ 273 AQ 274 (274)
T ss_dssp TC
T ss_pred cC
Confidence 86
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=2.1e-46 Score=391.81 Aligned_cols=257 Identities=32% Similarity=0.416 Sum_probs=216.1
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
+.+|+.+ +|+||+|+|||||||++||+|.++ ++..++|.++.
T Consensus 21 ~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~---------------------------~~~~~~~~~~~---------- 62 (279)
T d1thma_ 21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK---------------------------VVGGWDFVDND---------- 62 (279)
T ss_dssp HHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEETTTTB----------
T ss_pred HHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC---------------------------eeccccccccC----------
Confidence 5589887 899999999999999999999754 34444454321
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEee
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSMS 256 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~S 256 (729)
..+.|..+||||||++|++....+ ..+.|+||+|+|+.+|++...+ +...+++++|+++++.+++|+|+|
T Consensus 63 -~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S 133 (279)
T d1thma_ 63 -STPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLS 133 (279)
T ss_dssp -SCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred -cccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccc
Confidence 346788999999999999985432 2248999999999999998776 788899999999999999999999
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecCC
Q 004809 257 LGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYPG 336 (729)
Q Consensus 257 lG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~~ 336 (729)
||... .......+...+.++++++|+|+||+|......+...+++++|||++.
T Consensus 134 ~G~~~---~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~------------------------ 186 (279)
T d1thma_ 134 LGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------------------ 186 (279)
T ss_dssp CCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT------------------------
T ss_pred cCccc---cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC------------------------
Confidence 99753 344556667788899999999999999888888888999999998542
Q ss_pred CCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhhH
Q 004809 337 NSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKTG 416 (729)
Q Consensus 337 ~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~g 416 (729)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d1thma_ 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCCC
Q 004809 417 DILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFSN 496 (729)
Q Consensus 417 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 496 (729)
.+.++.||++|+.. ||.|||.+|+++.+. +.
T Consensus 187 ----------------------------~~~~~~~S~~G~~~--------di~Apg~~i~~~~~~-------------~~ 217 (279)
T d1thma_ 187 ----------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT-------------ST 217 (279)
T ss_dssp ----------------------------TSCBCTTCCCCTTC--------CEEEECSSEEEEETT-------------TE
T ss_pred ----------------------------CCCCccccCCCceE--------EEeeeeeccccccCc-------------cc
Confidence 12578999999865 999999999999875 47
Q ss_pred ceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCC
Q 004809 497 FNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574 (729)
Q Consensus 497 y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 574 (729)
|..++|||||||||||++|||+|.+| ++.+||++|++||+++.. .+..||+|+||+.+||+
T Consensus 218 ~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g---------------~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 218 YASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG---------------TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT---------------BTTTBSSEECCHHHHHH
T ss_pred ccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC---------------CCCcceeeeEcHHHhhC
Confidence 99999999999999999999999766 789999999999987632 34579999999999975
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=1.9e-46 Score=392.60 Aligned_cols=258 Identities=32% Similarity=0.423 Sum_probs=212.2
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
.+.+|+++++|+||+|+|||||||++||+|+.. ..+++....
T Consensus 13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~-----------------------------~~~~~~~~~--------- 54 (281)
T d1to2e_ 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA-----------------------------GGASMVPSE--------- 54 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-----------------------------EEEECCTTC---------
T ss_pred cHHHHHCCCCCCCeEEEEECCCCCCCChhhhhc-----------------------------CCccccCCC---------
Confidence 356999999999999999999999999999632 112222110
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEe
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSM 255 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~ 255 (729)
.....+..+|||||||||+|..... ...|+||+|+|+.+|++...+ +...+++++|++++..+++|||+
T Consensus 55 -~~~~~~~~~HGT~vAgiiag~~~~~---------~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~ 124 (281)
T d1to2e_ 55 -TNPFQDNNSHGTHVAGTVAALNNSI---------GVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINM 124 (281)
T ss_dssp -CCTTCCSSSHHHHHHHHHHCCSSSS---------SBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEE
T ss_pred -CCCCcCcCCCCceeecccccCCCCC---------CcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccccc
Confidence 0122345789999999999874211 137999999999999998776 67888999999999999999999
Q ss_pred ecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC----CCcCCCCCceEEEcccccCccccEEEEeCCCcEEEee
Q 004809 256 SLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFI----GTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGL 331 (729)
Q Consensus 256 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~ 331 (729)
|||.. .....+..++..+.++|+++|+||||+|... ...++..+++|+||+.+.+
T Consensus 125 S~g~~---~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~------------------ 183 (281)
T d1to2e_ 125 SLGGP---SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS------------------ 183 (281)
T ss_dssp CEEBS---CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT------------------
T ss_pred ccCCC---cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC------------------
Confidence 99974 3456677777889999999999999998653 3345678899999985421
Q ss_pred eecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEe
Q 004809 332 SLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFM 411 (729)
Q Consensus 332 ~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i 411 (729)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCC
Q 004809 412 NSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSK 491 (729)
Q Consensus 412 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~ 491 (729)
+.++.||++||.. |+.|||.+|+++.+.
T Consensus 184 ----------------------------------~~~~~~S~~G~~~--------d~~apG~~i~s~~~~---------- 211 (281)
T d1to2e_ 184 ----------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTLPG---------- 211 (281)
T ss_dssp ----------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEETT----------
T ss_pred ----------------------------------CCCCcccCCCCCc--------cccCCCCCceeecCC----------
Confidence 2568899999865 999999999999874
Q ss_pred CCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccC
Q 004809 492 LSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDK 571 (729)
Q Consensus 492 ~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~ 571 (729)
+.|..++|||||||+|||++|||+|++|+|++++||++|++||+++. .+..||+|+||+.+
T Consensus 212 ---~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~----------------~~~~~G~G~ld~~~ 272 (281)
T d1to2e_ 212 ---NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG----------------DSFYYGKGLINVQA 272 (281)
T ss_dssp ---TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS----------------CHHHHTTCBCCHHH
T ss_pred ---CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC----------------CCCCcccCcccHHH
Confidence 47889999999999999999999999999999999999999998763 23478999999999
Q ss_pred cCC
Q 004809 572 ALD 574 (729)
Q Consensus 572 Al~ 574 (729)
|++
T Consensus 273 A~~ 275 (281)
T d1to2e_ 273 AAQ 275 (281)
T ss_dssp HTS
T ss_pred HHh
Confidence 998
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=4.5e-46 Score=387.34 Aligned_cols=256 Identities=30% Similarity=0.415 Sum_probs=213.5
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
...+|..+++|+||+|+||||||+ +||+|... ..++|..+
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~-----------------------------~~~~~~~~---------- 52 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR-----------------------------GGASFVPG---------- 52 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE-----------------------------EEEECSTT----------
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCcc-----------------------------ccccccCC----------
Confidence 356999999999999999999998 89998532 12223221
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcCCcEEEe
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDGVDVLSM 255 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~gvdVIn~ 255 (729)
...+.|..+|||||||+|++.... +...|+||+|+|+.+|++...+ .....+.++|++++..++++||+
T Consensus 53 -~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~ 122 (269)
T d1gcia_ 53 -EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANL 122 (269)
T ss_dssp -CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEE
T ss_pred -CCCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccc
Confidence 124567889999999999987432 2237999999999999998776 67778999999999999999999
Q ss_pred ecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeeecC
Q 004809 256 SLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSLYP 335 (729)
Q Consensus 256 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~~~ 335 (729)
|||... .......+...+.++|++||+||||+|......++..|++|+||+++.+
T Consensus 123 s~g~~~---~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------- 177 (269)
T d1gcia_ 123 SLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN---------------------- 177 (269)
T ss_dssp CCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT----------------------
T ss_pred cccccc---ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC----------------------
Confidence 999743 3344556667889999999999999998877888889999999985421
Q ss_pred CCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEechhh
Q 004809 336 GNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNSKT 415 (729)
Q Consensus 336 ~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~ 415 (729)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCCCC
Q 004809 416 GDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLSFS 495 (729)
Q Consensus 416 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 495 (729)
+.++.||++||. |||+|||.++.++... .
T Consensus 178 ------------------------------~~~~~~S~~G~~--------~di~Apg~~~~~~~~~-------------~ 206 (269)
T d1gcia_ 178 ------------------------------NNRASFSQYGAG--------LDIVAPGVNVQSTYPG-------------S 206 (269)
T ss_dssp ------------------------------SCBCTTCCCSTT--------EEEEEECSSEEEEETT-------------T
T ss_pred ------------------------------CCcccccCCCCC--------ceEEEeeecceeccCC-------------C
Confidence 256889999985 4999999999998774 4
Q ss_pred CceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCccCcCC
Q 004809 496 NFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINPDKALD 574 (729)
Q Consensus 496 ~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 574 (729)
.|..++|||||||+|||++|||+|++|+|++++||++|++||+++. .+..||+|+||+++|++
T Consensus 207 ~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g----------------~~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 207 TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG----------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS----------------CHHHHTTCBCCHHHHTC
T ss_pred ceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC----------------CCCCcccCeEcHHHhcC
Confidence 7899999999999999999999999999999999999999998763 23478999999999985
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=2.4e-42 Score=365.85 Aligned_cols=287 Identities=28% Similarity=0.346 Sum_probs=215.4
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 97 KSGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 97 ~~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
.+.+|..+++|+||+|+|||||||++||+|.++ +...++|..... .
T Consensus 15 ~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~---------------------------~~~~~~~~~~~~-------~ 60 (309)
T d2ixta1 15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT-------P 60 (309)
T ss_dssp TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS-------C
T ss_pred ChhhhccCCCCCCeEEEEEccCCCCCChhHhcc---------------------------ccccccccCCCC-------C
Confidence 567999999999999999999999999999864 333344432211 1
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcC-----C
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDG-----V 250 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~g-----v 250 (729)
......|..+|||||||||+|....+. ..+.||||+|+|+.+|++...+ +..++++.+++++++.+ .
T Consensus 61 ~~~~~~d~~gHGT~VAgiiaa~~~~~~-------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 133 (309)
T d2ixta1 61 INNSCTDRNGHGTHVAGTALADGGSDQ-------AGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTK 133 (309)
T ss_dssp EETCCCCSSSHHHHHHHHHHCBCCTTS-------CSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCccccccccccccccccccccccc-------hhhhhhhhhccceeeeeecCCCCccccccccccccccccccccccc
Confidence 113456788999999999998753321 2247999999999999998776 77888999999888643 5
Q ss_pred cEEEeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC--cCCCCCceEEEcccccCccccEEEEeCCCcEE
Q 004809 251 DVLSMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGT--LHNGIPWVMTVAAGTMDRELGATLTLGNGNTV 328 (729)
Q Consensus 251 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t--~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~ 328 (729)
.|+|+|++... .......+...+.++|+++|+||||++..... .++..+++++|++.+.........
T Consensus 134 ~v~~~s~~~~~---~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~~-------- 202 (309)
T d2ixta1 134 TIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYR-------- 202 (309)
T ss_dssp EEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEEE--------
T ss_pred ccccccccccc---cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccccccccc--------
Confidence 78999998643 34455556678889999999999999866543 345668888888754221100000
Q ss_pred EeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccE
Q 004809 329 TGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPA 408 (729)
Q Consensus 329 ~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~ 408 (729)
T Consensus 203 -------------------------------------------------------------------------------- 202 (309)
T d2ixta1 203 -------------------------------------------------------------------------------- 202 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCcccc
Q 004809 409 VFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQT 488 (729)
Q Consensus 409 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~ 488 (729)
.........++++|+..... .||||+|||.+|+++...
T Consensus 203 ---------------------------------~~~~~~~~~~~~~~~~~~~~--~~vdi~apG~~~~s~~~~------- 240 (309)
T d2ixta1 203 ---------------------------------VADYSSRGYISTAGDYVIQE--GDIEISAPGSSVYSTWYN------- 240 (309)
T ss_dssp ---------------------------------ECTTSCCCCTTTTTSSSCCT--TCCCEEEECSSEEEECTT-------
T ss_pred ---------------------------------ccccccccccccccccccCC--CcceeecCCCceeeecCC-------
Confidence 00111344567777766544 799999999999999874
Q ss_pred CCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccC
Q 004809 489 NSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHIN 568 (729)
Q Consensus 489 ~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn 568 (729)
..|..++|||||||+|||++|||+|++|+|++.+||++|++||++++..+... .....++.+|+|++|
T Consensus 241 ------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~g------~~~~~~~~~g~G~~~ 308 (309)
T d2ixta1 241 ------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYG------AAIGDDYASGFGFAR 308 (309)
T ss_dssp ------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTT------CCSSSBTTTBTCBCC
T ss_pred ------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcC------CccCCCcccCCCEec
Confidence 47899999999999999999999999999999999999999999886543211 334567788999987
Q ss_pred c
Q 004809 569 P 569 (729)
Q Consensus 569 ~ 569 (729)
+
T Consensus 309 v 309 (309)
T d2ixta1 309 V 309 (309)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=7.5e-41 Score=355.55 Aligned_cols=296 Identities=27% Similarity=0.301 Sum_probs=220.6
Q ss_pred CCCCcC-CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCcc
Q 004809 98 SGAWPV-SKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITI 176 (729)
Q Consensus 98 ~~~w~~-~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 176 (729)
+.+|.. |++|+||+|||||||||++||+|.... . .++++...+.+...
T Consensus 11 ~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~----------------~-----~~~~~~~~~~~~~~---------- 59 (318)
T d1wmda2 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE----------------A-----FRGKITALYALGRT---------- 59 (318)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT----------------T-----TTTCEEEEEETTTT----------
T ss_pred hhHHHccCccccCeEEEEEcCCcCCCCcccccCc----------------c-----cCCcEEeecCCCCC----------
Confidence 346665 999999999999999999999997531 0 12233333333211
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC---CChHHHHHHHHHHHHcCCcEE
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG---SFTSDIIAAIDQAIIDGVDVL 253 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~il~ai~~A~~~gvdVI 253 (729)
..+.|..||||||||||+|+... ..||||+|+|+.+|++...+ .....+..+++++...+++|+
T Consensus 60 --~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (318)
T d1wmda2 60 --NNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIH 126 (318)
T ss_dssp --TCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEE
T ss_pred --CCCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCcee
Confidence 34567899999999999997322 27999999999999998765 334457789999999999999
Q ss_pred EeecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcC--CCCCceEEEcccccCccccEEEEeCCCcEEEee
Q 004809 254 SMSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIGTLH--NGIPWVMTVAAGTMDRELGATLTLGNGNTVTGL 331 (729)
Q Consensus 254 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~--~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~ 331 (729)
|+|||.............+...+.++++++|+|+||.|.....+. ...++++++.+.........
T Consensus 127 ~~S~g~~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------- 193 (318)
T d1wmda2 127 TNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFG------------- 193 (318)
T ss_dssp EECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGC-------------
T ss_pred ecccccccccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccccc-------------
Confidence 999998765555666666666778999999999999997765443 34567777766432211000
Q ss_pred eecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEe
Q 004809 332 SLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFM 411 (729)
Q Consensus 332 ~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i 411 (729)
T Consensus 194 -------------------------------------------------------------------------------- 193 (318)
T d1wmda2 194 -------------------------------------------------------------------------------- 193 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCC
Q 004809 412 NSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSK 491 (729)
Q Consensus 412 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~ 491 (729)
........+..||++||..... .|||+.|||.+|+++.......... ..
T Consensus 194 ----------------------------~~~~~~~~~~~~s~~G~~~~~~--~~~~~~a~G~~i~~~~~~~~~~~~~-~~ 242 (318)
T d1wmda2 194 ----------------------------SYADNINHVAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSF-WA 242 (318)
T ss_dssp ----------------------------GGGSCTTSBCTTSCCCCCTTSC--CCCCEEEECSSEEEECCTTCCGGGS-SE
T ss_pred ----------------------------cccccccccccccccCCCcCCC--cccceeecCceEEeccccccccCcc-cc
Confidence 0012233567899999988765 8999999999999988765332211 11
Q ss_pred CCCCCceeeccccchhHHHHHHHHHHHhhC-----CCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccc
Q 004809 492 LSFSNFNLQSGTSMACPQAAGIAALLRGAH-----PEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGH 566 (729)
Q Consensus 492 ~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-----P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~ 566 (729)
.....|..++|||||||||||++|||+|++ +.|+|.+||++|++||++... +.++..||||+
T Consensus 243 ~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~-------------~~~~~~~G~G~ 309 (318)
T d1wmda2 243 NHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-------------GYPNGNQGWGR 309 (318)
T ss_dssp EEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-------------CSSCTTTTTCB
T ss_pred CCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC-------------CCCCCCeeece
Confidence 123568889999999999999999999974 468999999999999997643 34567899999
Q ss_pred cCccCcCC
Q 004809 567 INPDKALD 574 (729)
Q Consensus 567 vn~~~Al~ 574 (729)
||+.+||+
T Consensus 310 ld~~~Al~ 317 (318)
T d1wmda2 310 VTLDKSLN 317 (318)
T ss_dssp CCHHHHHT
T ss_pred ecHHHHhC
Confidence 99999986
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=8.7e-42 Score=356.69 Aligned_cols=237 Identities=30% Similarity=0.364 Sum_probs=191.5
Q ss_pred CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCCC
Q 004809 103 VSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSPR 182 (729)
Q Consensus 103 ~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 182 (729)
...+|+||+|+|||+|||++||+|.++ +.....+. ..+.
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~---------------------------~~~~~~~~--------------~~~~ 64 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYY--------------YSSR 64 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESS--------------SCSS
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC---------------------------ceeccCCC--------------CCcc
Confidence 355899999999999999999999864 11111110 1356
Q ss_pred CCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHcC-------CcEEE
Q 004809 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIIDG-------VDVLS 254 (729)
Q Consensus 183 D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~g-------vdVIn 254 (729)
|.++|||||||||+|+. .|+||+|+|+.+|++.... ...+.+..+++++.... ++|+|
T Consensus 65 d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n 130 (279)
T d2pwaa1 65 DGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVAS 130 (279)
T ss_dssp CSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEE
T ss_pred cccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheeccccccccccccccee
Confidence 78899999999999862 5999999999999998765 67788899999988643 45999
Q ss_pred eecCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcCCCCCceEEEcccccCccccEEEEeCCCcEEEeeee
Q 004809 255 MSLGLDGVDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG-TLHNGIPWVMTVAAGTMDRELGATLTLGNGNTVTGLSL 333 (729)
Q Consensus 255 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~~~g~~~ 333 (729)
+|||.. ..+.+..++..+.++|+++|+||||++.... ..+...|++|+|||++.
T Consensus 131 ~s~g~~----~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~--------------------- 185 (279)
T d2pwaa1 131 LSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR--------------------- 185 (279)
T ss_dssp ECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------------
T ss_pred ccCCCc----cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee---------------------
Confidence 999963 4556777778889999999999999986543 35567899999998542
Q ss_pred cCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccccccEEEech
Q 004809 334 YPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFPAVFMNS 413 (729)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~ 413 (729)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccccCCCCC
Q 004809 414 KTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQTNSKLS 493 (729)
Q Consensus 414 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 493 (729)
.+.++.||++||.. ||+|||.+|+++++.
T Consensus 186 -------------------------------~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~------------ 214 (279)
T d2pwaa1 186 -------------------------------YDRRSSFSNYGSVL--------DIFGPGTDILSTWIG------------ 214 (279)
T ss_dssp -------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEEETT------------
T ss_pred -------------------------------cCCCccccCCCCcc--------ccccccccccccccC------------
Confidence 23578999999854 999999999999875
Q ss_pred CCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCCCCCCCCccccCc
Q 004809 494 FSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPATPIAMGAGHINP 569 (729)
Q Consensus 494 ~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~ 569 (729)
+.|..++|||||||+|||++|||+|++|.++++++|. |++||++.. ...+|+|++|.
T Consensus 215 -~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~-----------------~~~~g~g~~n~ 271 (279)
T d2pwaa1 215 -GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD-----------------LSNIPFGTVNL 271 (279)
T ss_dssp -TEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC-----------------CBSCCTTSCCE
T ss_pred -CcccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC-----------------CCCCCCCChhh
Confidence 4799999999999999999999999999999887775 777887542 33678999885
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.5e-38 Score=336.15 Aligned_cols=282 Identities=17% Similarity=0.178 Sum_probs=189.5
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccc-cccccCCCCcc
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNK-GLLAKNPTITI 176 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~-~~~~~~~~~~~ 176 (729)
+.+|..+++|+||+|||||||||++||+|.++- .....|.. ..+ ....
T Consensus 27 ~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~---------------------------~~~~~~~~~~~~----~~~~ 75 (334)
T d1p8ja2 27 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY---------------------------DPGASFDVNDQD----PDPQ 75 (334)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB---------------------------CGGGCEETTTTB----SCCC
T ss_pred HHHHhcCCCCCCeEEEEEccCCCCCChhHhhcc---------------------------ccCCCccccCCC----Cccc
Confidence 459999999999999999999999999998641 11111110 000 0011
Q ss_pred CCCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHH-cCCcEEEe
Q 004809 177 AMNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAII-DGVDVLSM 255 (729)
Q Consensus 177 ~~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~-~gvdVIn~ 255 (729)
+.....|..+|||||||||+|...++.. ..|+||+++++.+|+... ...+.+.++.++++ .+++++|+
T Consensus 76 ~~~~~~~~~gHGT~vAgiia~~~~n~~~--------~~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~ 144 (334)
T d1p8ja2 76 PRYTQMNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLDG---EVTDAVEARSLGLNPNHIHIYSA 144 (334)
T ss_dssp CCCCTTCTTCHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSSS---CCCHHHHHHHHTSCTTTCCEEEE
T ss_pred cccccccCccchhhhhhhhhhccccccc--------cccccccccccchhhccc---cccchHHHHHHHhhhcCCcEEeC
Confidence 1223557889999999999998543221 269999999999999753 33455667777665 67999999
Q ss_pred ecCCCCCC-CCC--------cHHHHHHHHHHhCCcEEEEecCCCCCCCCCcC----CCCCceEEEcccccCccccEEEEe
Q 004809 256 SLGLDGVD-LYE--------DPVAIATFAAIEKNIFVSTSAGNQGPFIGTLH----NGIPWVMTVAAGTMDRELGATLTL 322 (729)
Q Consensus 256 SlG~~~~~-~~~--------~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~t~~----~~~p~vitVgAst~d~~~~~~~~l 322 (729)
|||..... ... ..+......+..+|+++|+||||++....... ...+.+++|++.+.
T Consensus 145 S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~---------- 214 (334)
T d1p8ja2 145 SWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ---------- 214 (334)
T ss_dssp CCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT----------
T ss_pred CCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc----------
Confidence 99975321 111 11222233455789999999999875443222 13344555555321
Q ss_pred CCCcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeec
Q 004809 323 GNGNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFL 402 (729)
Q Consensus 323 ~~g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 402 (729)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCC-----EEe
Q 004809 403 QSSFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDS-----ILA 477 (729)
Q Consensus 403 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~-----I~s 477 (729)
.+..+.||++|+... .++.+||.. +.+
T Consensus 215 ------------------------------------------~g~~~~~s~~~~~~~------~~~~~~~~~~~~~~~~~ 246 (334)
T d1p8ja2 215 ------------------------------------------FGNVPWYSEACSSTL------ATTYSSGNQNEKQIVTT 246 (334)
T ss_dssp ------------------------------------------TSCCCTTCCBCTTCC------EEEECCCSTTSCCEEEE
T ss_pred ------------------------------------------CCceeeecccCCccc------ccccccccccccccccc
Confidence 123455666666542 244455432 222
Q ss_pred ecCCCCCccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCCcccCCCCCCCC
Q 004809 478 AWPSNLAVSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSDIKDIGDDNKPA 557 (729)
Q Consensus 478 a~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~~~~~~~~~~~~ 557 (729)
... ...|..++|||||||||||++|||+|++|+|++.|||++|++||++.......+.... ....
T Consensus 247 ~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~--~~~~ 311 (334)
T d1p8ja2 247 DLR-------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNG--VGRK 311 (334)
T ss_dssp ETT-------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECT--TSCE
T ss_pred ccC-------------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccccccC--CCcc
Confidence 221 2578899999999999999999999999999999999999999998765543333222 2223
Q ss_pred CCCCCCccccCccCcCC
Q 004809 558 TPIAMGAGHINPDKALD 574 (729)
Q Consensus 558 ~~~~~G~G~vn~~~Al~ 574 (729)
.+..||+|+||+.+||+
T Consensus 312 ~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 312 VSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp EBTTTBTCBCCHHHHHH
T ss_pred cCCCCcceEeCHHHHHH
Confidence 45579999999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-38 Score=339.98 Aligned_cols=285 Identities=19% Similarity=0.161 Sum_probs=199.8
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccC
Q 004809 98 SGAWPVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIA 177 (729)
Q Consensus 98 ~~~w~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 177 (729)
..+|.++++|+||+|+|||||||++||+|.++-. . .+.++|.+.. ..
T Consensus 36 ~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~-------~------------------~~~~~~~~~~--------~~ 82 (339)
T d2id4a2 36 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------A------------------EGSWDFNDNT--------NL 82 (339)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------G------------------GGCEETTTTB--------SC
T ss_pred HHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc-------c------------------ccccccccCC--------Cc
Confidence 4589999999999999999999999999986410 0 0112222211 11
Q ss_pred CCCCCCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHHHcCCcEEEeec
Q 004809 178 MNSPRDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAIIDGVDVLSMSL 257 (729)
Q Consensus 178 ~~~~~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~~~gvdVIn~Sl 257 (729)
.....+..+||||||++|+|....+.. ..|+||+|+|+.++++.. .....++..++.+++.. .+|+|+|+
T Consensus 83 ~~~~~~~~~HGT~vag~iaa~~~~~~~--------~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~s~ 152 (339)
T d2id4a2 83 PKPRLSDDYHGTRCAGEIAAKKGNNFC--------GVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDIYSCSW 152 (339)
T ss_dssp CCCCSTTTTHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSEEEECE
T ss_pred cCCCcccccccceeeeccccccccccc--------ccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCEEeccC
Confidence 123456789999999999987543322 379999999999999753 36677788888877665 59999999
Q ss_pred CCCCCCC----CC----cHH-HHHHHHHHhCCcEEEEecCCCCCCCCCc--C--CCCCceEEEcccccCccccEEEEeCC
Q 004809 258 GLDGVDL----YE----DPV-AIATFAAIEKNIFVSTSAGNQGPFIGTL--H--NGIPWVMTVAAGTMDRELGATLTLGN 324 (729)
Q Consensus 258 G~~~~~~----~~----~~~-~~a~~~a~~~Gi~vV~AAGN~G~~~~t~--~--~~~p~vitVgAst~d~~~~~~~~l~~ 324 (729)
|...... .. ..+ ..+...+..+|+++|+||||++...... + ...+.+++|++++
T Consensus 153 g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 219 (339)
T d2id4a2 153 GPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID------------- 219 (339)
T ss_dssp ESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC-------------
T ss_pred CCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc-------------
Confidence 9743111 11 112 2233355579999999999987543221 1 1234444444422
Q ss_pred CcEEEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeeccc
Q 004809 325 GNTVTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQS 404 (729)
Q Consensus 325 g~~~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 404 (729)
T Consensus 220 -------------------------------------------------------------------------------- 219 (339)
T d2id4a2 220 -------------------------------------------------------------------------------- 219 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCC
Q 004809 405 SFPAVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLA 484 (729)
Q Consensus 405 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~ 484 (729)
..+..+.||++|+... ..++..+||..+.++....
T Consensus 220 ---------------------------------------~~g~~~~~s~~~~~~~----~~~~~~~~g~~~~s~~~~~-- 254 (339)
T d2id4a2 220 ---------------------------------------HKDLHPPYSEGCSAVM----AVTYSSGSGEYIHSSDING-- 254 (339)
T ss_dssp ---------------------------------------TTSCCCTTCCCCTTEE----EEEECSBTTBCEEEECSTT--
T ss_pred ---------------------------------------ccccccccccccCccc----eeeeeeccccccceeccCC--
Confidence 1234567777777653 4567788999998876543
Q ss_pred ccccCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCC-cccCCCCCCCCCCCCCC
Q 004809 485 VSQTNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPEWSPAAIRSAIMTTSDSTDNTNSD-IKDIGDDNKPATPIAMG 563 (729)
Q Consensus 485 ~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~Ik~~L~~TA~~~~~~~~~-~~~~~~~~~~~~~~~~G 563 (729)
..|..++|||||||||||++|||+|++|+|++.|||++|++||+.++..... +.+.. ..+..+..||
T Consensus 255 ----------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~--~~~~~~~~~G 322 (339)
T d2id4a2 255 ----------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSA--MGKKYSHRYG 322 (339)
T ss_dssp ----------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECS--SSSEEBTTTB
T ss_pred ----------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccC--CCCCcCCCcc
Confidence 5788999999999999999999999999999999999999999987543211 11111 2233456799
Q ss_pred ccccCccCcCCC
Q 004809 564 AGHINPDKALDP 575 (729)
Q Consensus 564 ~G~vn~~~Al~~ 575 (729)
||+||+.+||+.
T Consensus 323 ~G~ln~~~Av~~ 334 (339)
T d2id4a2 323 FGKIDAHKLIEM 334 (339)
T ss_dssp TCBCCHHHHHHH
T ss_pred chhhCHHHHHHH
Confidence 999999999873
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.95 E-value=1.6e-29 Score=271.52 Aligned_cols=317 Identities=17% Similarity=0.141 Sum_probs=182.3
Q ss_pred cCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCCccCcccCCCeeeceeeccccccccCCCCccCCCCC
Q 004809 102 PVSKFGKDIIIGVVDTGVWPESESYNDGGMTEIPSRWKGECESGTQFNSSLCNKKLIGARFFNKGLLAKNPTITIAMNSP 181 (729)
Q Consensus 102 ~~~~~G~gvvVgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 181 (729)
..+++|+||+|||||||||++||+|.+. |+.. +.. .. ...+
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~~---~~~---------------~~-------------~~~~ 58 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FASL---GVS---------------AP-------------QVVS 58 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHHT---TCC---------------CC-------------CEEE
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhhc---CCC---------------CC-------------CCce
Confidence 4689999999999999999999999742 1100 000 00 0012
Q ss_pred CCCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCCCChHHHHHHHHHHH---HcCCcEEEeecC
Q 004809 182 RDANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEGSFTSDIIAAIDQAI---IDGVDVLSMSLG 258 (729)
Q Consensus 182 ~D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~il~ai~~A~---~~gvdVIn~SlG 258 (729)
.|..+|+||+++++++....... ....+.||||+|+|+.+|++.. ...++.+|++++ +.+++|||+|||
T Consensus 59 ~~~~g~~~~~~g~~~~~~~~~~~----d~~~~~GvAp~A~i~~~~~~~~----~~~~~~~i~~~~~~~~~~~~Vin~S~G 130 (357)
T d1t1ga_ 59 VSVDGATNQPTGDPNGPDGEVEL----DIEVAGALAPGAKIAVYFAPNT----DAGFLNAITTAVHDPTHKPSIVSISWG 130 (357)
T ss_dssp EESTTCCCCCCSCTTSTHHHHHH----HHHHHHHHSTTSEEEEEECCSS----HHHHHHHHHHHHHCTTTCCSEEEECCC
T ss_pred eCCCCCCCCCCCccccccccccC----CcccceeecccCeEEEEecccC----CCchHHHHHHHHHhhhcCCeEEecccc
Confidence 23456777766666544221100 0112479999999999999743 345566666666 458999999999
Q ss_pred CCCCCC---CCcHHHHHHHHHHhCCcEEEEecCCCCCCCC--------CcCCCCCceEEEcccccCccccEEEEeCCCcE
Q 004809 259 LDGVDL---YEDPVAIATFAAIEKNIFVSTSAGNQGPFIG--------TLHNGIPWVMTVAAGTMDRELGATLTLGNGNT 327 (729)
Q Consensus 259 ~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--------t~~~~~p~vitVgAst~d~~~~~~~~l~~g~~ 327 (729)
...... +...+......+..+|+++|+|+||+|.... ..+...+++++|++........ .
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~- 201 (357)
T d1t1ga_ 131 GPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAG--------R- 201 (357)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECSS--------C-
T ss_pred cCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCCC--------c-
Confidence 743221 2234555556777899999999999885332 2234567888888754321100 0
Q ss_pred EEeeeecCCCCCCceeeEEEcCCcccccccccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEecCCCceeecccccc
Q 004809 328 VTGLSLYPGNSSLIDFPIVFMDECLNLAELKKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISDFDGLEFFLQSSFP 407 (729)
Q Consensus 328 ~~g~~~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p 407 (729)
....+.... ... . .....|
T Consensus 202 ~~~~~~~~~-----------------~~~------------------------~-~~~~~g------------------- 220 (357)
T d1t1ga_ 202 IERETVWND-----------------GPD------------------------G-GSTGGG------------------- 220 (357)
T ss_dssp EEEEEECBC-----------------HHH------------------------H-CBCCCE-------------------
T ss_pred cccceeccc-----------------ccc------------------------c-ccccCC-------------------
Confidence 000000000 000 0 000000
Q ss_pred EEEechhhHHHHHHHHhhcCCcEEEEEecceeecCCCCCceecccCCCCCCCCCCCccCcEEecCCCEEeecCCCCCccc
Q 004809 408 AVFMNSKTGDILKDYIKIENNATATIQFQKTELGTKPAPSVASYSSRGPSISCPFVLKPDVMAPGDSILAAWPSNLAVSQ 487 (729)
Q Consensus 408 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~ilKPDI~APG~~I~sa~~~~~~~~~ 487 (729)
.+..+ ............+++++++...+ .|||+.+++..........
T Consensus 221 -----------------------~s~~~---~~p~~~~~~~~~~~~~~~~~~~~--~~pd~~~~~~~~~~~~~~~----- 267 (357)
T d1t1ga_ 221 -----------------------VSRIF---PLPSWQERANVPPSANPGAGSGR--GVPDVAGNADPATGYEVVI----- 267 (357)
T ss_dssp -----------------------ECSSS---CCCGGGTTSCCCCCSSTTCCCCC--EECSEEEECCTTEEEEEEE-----
T ss_pred -----------------------ccccc---ccCcccccccccccccCCCCCCc--eecceecccCCCCceEEec-----
Confidence 00000 00011123556778888877766 9999999976654332211
Q ss_pred cCCCCCCCCceeeccccchhHHHHHHHHHHHhhCCC---CCHHHHHHHHHhccccCCCCCCCc--ccCCCCCCCCCCCCC
Q 004809 488 TNSKLSFSNFNLQSGTSMACPQAAGIAALLRGAHPE---WSPAAIRSAIMTTSDSTDNTNSDI--KDIGDDNKPATPIAM 562 (729)
Q Consensus 488 ~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~---~sp~~Ik~~L~~TA~~~~~~~~~~--~~~~~~~~~~~~~~~ 562 (729)
.+.|..++|||||||||||++|||+|+++. +...+++++...+.+++....... ........+.++..+
T Consensus 268 ------~~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d~~t 341 (357)
T d1t1ga_ 268 ------DGETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDPCT 341 (357)
T ss_dssp ------TTEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSBTTT
T ss_pred ------CCceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcccCccCCCCCc
Confidence 258999999999999999999999998653 233444444333333221100000 000111344567789
Q ss_pred CccccCccCcCC
Q 004809 563 GAGHINPDKALD 574 (729)
Q Consensus 563 G~G~vn~~~Al~ 574 (729)
|+|++|+.++++
T Consensus 342 G~G~~n~~~~~~ 353 (357)
T d1t1ga_ 342 GLGSPIGIRLLQ 353 (357)
T ss_dssp BTCEECHHHHHH
T ss_pred cCchhhHHHHHH
Confidence 999999888765
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=3.3e-28 Score=263.26 Aligned_cols=121 Identities=18% Similarity=0.159 Sum_probs=93.6
Q ss_pred CCCCChhHHHHHhcccCcCCCccccccccceeeccCCCEEEEEEeecCCC-CChHHHHHHHHHHHHc-CCcEEEeecCCC
Q 004809 183 DANGHGTHTSSTAAGSYVERASYFGYAIGTALGTAPLARVAMYKALWNEG-SFTSDIIAAIDQAIID-GVDVLSMSLGLD 260 (729)
Q Consensus 183 D~~gHGTHVAgiaAG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~il~ai~~A~~~-gvdVIn~SlG~~ 260 (729)
+..+||||+++++++.... ..+.||||+|+|+.+|++.+.+ ....+++++|++|+.+ +++|||+|||..
T Consensus 66 ~~~~~~~~~~~~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~ 136 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWC 136 (369)
T ss_dssp TTSCCCBCHHHHHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEE
T ss_pred CCCCCCCCCCcceeecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeecccccc
Confidence 4568999999998765311 1247999999999999998776 6788999999999965 699999999974
Q ss_pred C----CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-------------CcCCCCCceEEEccccc
Q 004809 261 G----VDLYEDPVAIATFAAIEKNIFVSTSAGNQGPFIG-------------TLHNGIPWVMTVAAGTM 312 (729)
Q Consensus 261 ~----~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-------------t~~~~~p~vitVgAst~ 312 (729)
. .....+.+..++.+|.++||+||+||||+|.... ..+...+++++|+++..
T Consensus 137 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~ 205 (369)
T d1ga6a_ 137 EADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 205 (369)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred ccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence 3 1233455667777888999999999999985431 23356789999998643
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=97.81 E-value=8.8e-06 Score=63.95 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=39.3
Q ss_pred CCceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEcCCccC
Q 004809 40 SSKLLYTYSHVLNGFSASLTPAELEALKSSPGYISSIRDLPVK 82 (729)
Q Consensus 40 ~~~~~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 82 (729)
+.++.+.|+ .||||+++|++++++.|+++|+|.+||+|+.++
T Consensus 28 gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~ 69 (71)
T d1scjb_ 28 GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAH 69 (71)
T ss_dssp TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEE
T ss_pred CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEE
Confidence 578999998 699999999999999999999999999998765
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00012 Score=68.16 Aligned_cols=83 Identities=12% Similarity=0.110 Sum_probs=66.0
Q ss_pred eeeEEEcCCccccccc---ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec-CCC--c----------------e
Q 004809 342 DFPIVFMDECLNLAEL---KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD-FDG--L----------------E 399 (729)
Q Consensus 342 ~~~lv~~~~c~~~~~~---~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~-~~~--~----------------~ 399 (729)
+-++||..-|...++. .+++|||+|+++|.+.+.+|..+++++||.|+|+|++ .+. . .
T Consensus 40 ~g~lVy~n~G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDP 119 (193)
T d1de4c2 40 TGKLVHANFGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDP 119 (193)
T ss_dssp EECEEECSTTCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCT
T ss_pred eEEEEEccCCCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCC
Confidence 4588998888766655 5899999999999999999999999999999999986 110 0 0
Q ss_pred ee-------------c---c-ccccEEEechhhHHHHHHHHh
Q 004809 400 FF-------------L---Q-SSFPAVFMNSKTGDILKDYIK 424 (729)
Q Consensus 400 ~~-------------~---~-~~~p~~~i~~~~g~~l~~~~~ 424 (729)
+. . . -.||+..|+..+++.|++.+.
T Consensus 120 lTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 120 YTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 00 0 1 247999999999999988774
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=97.32 E-value=8.7e-05 Score=58.22 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=34.5
Q ss_pred CCceEEEec-ceeeEEEEEeCHHHHHHhhcCCC--eEEEEcCC
Q 004809 40 SSKLLYTYS-HVLNGFSASLTPAELEALKSSPG--YISSIRDL 79 (729)
Q Consensus 40 ~~~~~~~y~-~~~ng~s~~l~~~~~~~L~~~p~--V~~V~~~~ 79 (729)
...+.+.|. +.|+||+++|+++++++|+.+|+ |.+||+|.
T Consensus 29 ~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 29 GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 346777777 68999999999999999999665 99999986
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.0026 Score=60.80 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=47.9
Q ss_pred ceeeEEEcCCccccccc-------ccCCceEEEEccCCCchhhHHHHHHhCCceEEEEEec
Q 004809 341 IDFPIVFMDECLNLAEL-------KKVGQKIVVCQDKNDSLSNQVDNIQNASVSGGVFISD 394 (729)
Q Consensus 341 ~~~~lv~~~~c~~~~~~-------~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 394 (729)
.+-++||..-|...++. -+++|||+|+++|.+.+.+|..++++.||+|+||+++
T Consensus 53 v~g~~VyvnyG~~~Df~~L~~~~gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysD 113 (233)
T d3bi1a2 53 PEGDLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSD 113 (233)
T ss_dssp CEECEEECTTCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred eeEEEEEecCCcHHHHHHHHHhcCCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecC
Confidence 35689999888776653 4789999999999999999999999999999999997
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=95.82 E-value=0.068 Score=44.12 Aligned_cols=93 Identities=9% Similarity=-0.032 Sum_probs=62.8
Q ss_pred CCCCceeeeeccCCCceeEEEEEEEEecCCCCeE-EEEEEEeCCCcEEEEecCeEEEccCCeEEEEEEEEEecCCCCCCC
Q 004809 618 LNYPSFIAFFNANESKSVQEFQRTVTNVGEGVST-YTASVTPLKGFNFSVDPDKLTFKGKYAKQSYKLRIEGPNQMDEET 696 (729)
Q Consensus 618 lN~ps~~~~~~~~~~~~~~~~~rtvtnvg~~~~t-Y~~~v~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~ 696 (729)
|..|++.+.- ....+++.+|+|.|+...+ -++.+..|+|=+++.... .+ ++||+++++++++.+.....+.
T Consensus 6 ~t~p~~~v~p-----G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~--~L-~pG~s~~~~~~Vt~p~~a~~G~ 77 (103)
T d1w8oa1 6 FTIPDVALEP-----GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVE--PL-MPGRQAKGQVTITVPAGTTPGR 77 (103)
T ss_dssp EECCCEEECT-----TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEEC--CB-CTTCEEEEEEEEECCTTCCCEE
T ss_pred ccCcceeeCC-----CCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcce--ee-CCCCcEEEEEEEECCCCCCCce
Confidence 4457776642 2578999999999987654 567888999998876554 44 4899999999999986555343
Q ss_pred eeEEEEEEEEEcCCceEEEEEEEEEe
Q 004809 697 VVAFCYLSWIETGGKHVVKSPIVVTS 722 (729)
Q Consensus 697 ~~~~G~l~~~~~~~~~~v~~P~~~~~ 722 (729)
|.. .++.+ .+.......+-+..
T Consensus 78 -Y~i-~~~a~--~~~~~~s~t~tvtV 99 (103)
T d1w8oa1 78 -YRV-GATLR--TSAGNASTTFTVTV 99 (103)
T ss_dssp -EEE-EEEEE--ETTEEEEEEEEEEE
T ss_pred -EEE-EEEEE--eCCcceEEEEEEEE
Confidence 443 45555 44334444444443
|