Citrus Sinensis ID: 004814
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | 2.2.26 [Sep-21-2011] | |||||||
| P0C7Q9 | 718 | Pentatricopeptide repeat- | yes | no | 0.975 | 0.990 | 0.489 | 0.0 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.883 | 0.862 | 0.304 | 2e-84 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.861 | 0.861 | 0.287 | 4e-83 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.798 | 0.531 | 0.300 | 4e-81 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.803 | 0.768 | 0.302 | 4e-81 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.725 | 0.839 | 0.293 | 2e-79 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.827 | 0.799 | 0.299 | 2e-78 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.823 | 0.809 | 0.296 | 2e-78 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.831 | 0.662 | 0.288 | 4e-78 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.684 | 0.683 | 0.302 | 3e-77 |
| >sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/730 (48%), Positives = 491/730 (67%), Gaps = 19/730 (2%)
Query: 1 MTLCIRASKALSAHSYHYFYLKKVRFFFPFCFSVHTYPSISESNNKDSVLNPESESYYKE 60
+ LC+RAS++ + S RF F F T P + S+ S + ESYY
Sbjct: 5 LRLCLRASRSFFSISTTNNNNNLSRFLFRFS----TLPHCAASS---SSSSSNLESYYAN 57
Query: 61 LIISTVEE--KPWAFCNNRWVSDHFQAVVSDPELLVRVLNRIREKPRIALRFFRWVETQP 118
LI+S+ + KP N +W S F+ +++DP LL+RVLN IR KP IA RFF W++ Q
Sbjct: 58 LILSSHGDSNKP----NRKWSSHQFRLLLTDPNLLIRVLNMIRVKPEIAFRFFNWIQRQS 113
Query: 119 GVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDL 178
VK+ F +LEIL E+ L+ AY V E + + MH I D+LI G +++K+LDL
Sbjct: 114 DVKQSRQAFAAMLEILAENDLMSEAYLVAERSIDLGMHEIDDLLIDGSFDKLIALKLLDL 173
Query: 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG 238
LL +YTKKSM E+ LL F KM+R G LP V+NCN ++KVLRD+ KA VY M E G
Sbjct: 174 LLWVYTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHG 233
Query: 239 IKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQAR 298
I P+++T+NTMLDS K G+++ ++ EM+ R + VTYN+LI GFS+NG++E+AR
Sbjct: 234 IMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEAR 293
Query: 299 GLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGL 358
DM + G V+ +S+NP+I GY ++GL +A + +EM+ G+ PT +TYNI I L
Sbjct: 294 RFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICAL 353
Query: 359 CKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV 418
C +GR+ DAR E+L PD++SYNTL++GY + G EA LLFD+LR+ ++ P++
Sbjct: 354 CDFGRIDDAR----ELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSI 409
Query: 419 VTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNE 478
VTYNTLIDGLC G+LE AQ+LKE M Q I PDVITYT +V G K GNLSMA E ++E
Sbjct: 410 VTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDE 469
Query: 479 MLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKG-FPPDLITYNVLVHGLCKLG 537
MLRKG++PD +AYTT+ GEL+LGD+ +A+RL EEM+A PDL YNV + GLCK+G
Sbjct: 470 MLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVG 529
Query: 538 SLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYT 597
+L +A E RK+ G +PDH+TYT++I LE G + R+L++ MLRK L P+++TY
Sbjct: 530 NLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYF 589
Query: 598 VLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEE 657
VLI+ HA GRLE AF Y +EM+ +G+RPNV+T+NAL+ G+C+ ID+AY MEEE
Sbjct: 590 VLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEE 649
Query: 658 GILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHA 717
GI PNKY+YT+LI++NC+ W+E ++LYKEMLD+EIEPD TH A L K L+KD++
Sbjct: 650 GIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRA-LFKHLEKDHESRE 708
Query: 718 VEYLESLTLG 727
VE+LE L L
Sbjct: 709 VEFLERLLLS 718
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (803), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 207/680 (30%), Positives = 334/680 (49%), Gaps = 36/680 (5%)
Query: 64 STVEEKPWAFCNNRWVSDHFQAVVSDPELLVRVLNRIREKPRIALRFFRWVETQPGVKRD 123
S + +K F H + PE +L + + + L+F W P
Sbjct: 22 SLLADKALTFLKRHPYQLHHLSANFTPEAASNLLLKSQNDQALILKFLNWA--NPHQFFT 79
Query: 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSS----CVSIK-ILDL 178
C L IL + L ++A + E V + L+ L C S + DL
Sbjct: 80 LRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDL 139
Query: 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRI----IKVLRDNGFSVKAREVYRMM 234
++ Y++ S++++ L + + +G +P V + N + I+ R+ F A V++ M
Sbjct: 140 VVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISF---AENVFKEM 196
Query: 235 GEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGEL 294
E + P++ TYN ++ FC G + AL L +M+ +GC PN VTYN LI G+ + ++
Sbjct: 197 LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKI 256
Query: 295 EQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNIL 354
+ L+R M GL+ + SYN +I G +G + E + EM RG + TYN L
Sbjct: 257 DDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTL 316
Query: 355 IYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNL 414
I G CK G A EMLR + P +I+Y +L++ C++GN+ A D++R R L
Sbjct: 317 IKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376
Query: 415 VPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMARE 474
P TY TL+DG + G + A ++ M + G P V+TY ++NG C G + A
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIA 436
Query: 475 FFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLC 534
+M KGL PD +Y+T ++G + D EA R++ EM+ KG PD ITY+ L+ G C
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 535 KLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLV 594
+ +EA +L +M+ G PD TYT++I+A GDL + L N M+ KG+ P +V
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV 556
Query: 595 TYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYN---------------ALINGLC 639
TY+VLI+ + R A ++ + P+ +TY+ +LI G C
Sbjct: 557 TYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFC 616
Query: 640 RLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC 699
+ +A +F M + P+ Y I+I+ +C AG+ ++A LYKEM ++ +
Sbjct: 617 MKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM----VKSGFL 672
Query: 700 THSAL---LLKQLDKDYKVH 716
H+ L+K L K+ KV+
Sbjct: 673 LHTVTVIALVKALHKEGKVN 692
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (792), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 184/639 (28%), Positives = 325/639 (50%), Gaps = 11/639 (1%)
Query: 89 DPELLVRVLNRIREKPRIALRFFRWVETQ-PGVKRDEFVFCTILEILIESGLLRSAYWVV 147
+P +V VL R R + RF + P K ++ IL+ SG L A +
Sbjct: 77 NPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCL 136
Query: 148 ETVVCVNMHGILDVL--IGGGLSSCVS-IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL 204
++ + L+++ + S+C S + DLL+ Y + + + F + G
Sbjct: 137 LRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGF 196
Query: 205 LPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALE 264
+ CN +I L G+ A VY+ + G+ ++ T N M+++ CK+G+M++
Sbjct: 197 TVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGT 256
Query: 265 LLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324
L ++Q +G P+ VTYN LI+ +S G +E+A L+ M G ++YN +I G
Sbjct: 257 FLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLC 316
Query: 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDII 384
+ G A + EM+ G++P TY L+ CK G V + F +M ++V+PD++
Sbjct: 317 KHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLV 376
Query: 385 SYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENM 444
+++++ + RSGN+ +A + F+ ++ L+P V Y LI G CR G + VA L+ M
Sbjct: 377 CFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEM 436
Query: 445 INQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDT 504
+ QG DV+TY +++G CK L A + FNEM + L PD + T I G KLG+
Sbjct: 437 LQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNL 496
Query: 505 SEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSI 564
A L ++M K D++TYN L+ G K+G ++ A E+ MV +P I+Y+ +
Sbjct: 497 QNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSIL 556
Query: 565 IHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGI 624
++A G L +++ M+ K + PT++ +I + G + +M +G
Sbjct: 557 VNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGF 616
Query: 625 RPNVITYNALINGLCRLRRIDQAYGLFIDMEEE--GILPNKYTYTILINENCNAGNWQEA 682
P+ I+YN LI G R + +A+GL MEEE G++P+ +TY +++ C +EA
Sbjct: 617 VPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEA 676
Query: 683 LRLYKEMLDREIEPDYCTHSALLLKQLDKD-----YKVH 716
+ ++M++R + PD T++ ++ + +D +++H
Sbjct: 677 EVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIH 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 188/625 (30%), Positives = 308/625 (49%), Gaps = 43/625 (6%)
Query: 105 RIALRFFRWVETQPGVKRDEFV--FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVL 162
++AL+F +WV QPG++ D V C IL+ + + A +++ + M G +
Sbjct: 51 KLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSL--MSGKSSFV 108
Query: 163 IGGGLSS---CVS-IKILDLLLLIYTKKSMVEQCLLVF---------------------- 196
G +++ C S + D+L+ +Y ++ M++ L +F
Sbjct: 109 FGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSV 168
Query: 197 -------------NKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSI 243
+ML+ + PDV N +I VL G K+ + + M + G P+I
Sbjct: 169 VKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTI 228
Query: 244 VTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRD 303
VTYNT+L +CK+G + A+ELL M+ +G + TYN+LI R+ + + L+RD
Sbjct: 229 VTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRD 288
Query: 304 MLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGR 363
M K + + +YN +I G+S +G ++ A L EM++ G++P T+N LI G G
Sbjct: 289 MRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGN 348
Query: 364 VSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNT 423
+A F+ M K + P +SY LL G C++ A + ++ + +TY
Sbjct: 349 FKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTG 408
Query: 424 LIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKG 483
+IDGLC+ G L+ A L M GI PD++TY+ ++NG CK+G A+E + R G
Sbjct: 409 MIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVG 468
Query: 484 LQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEAN 543
L P+ Y+T I ++G EA R+ E M+ +G D T+NVLV LCK G + EA
Sbjct: 469 LSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAE 528
Query: 544 ELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAH 603
E +R M DG +P+ +++ +I+ G+ + +F+ M + G PT TY L+
Sbjct: 529 EFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGL 588
Query: 604 AARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNK 663
G L A + + + + YN L+ +C+ + +A LF +M + ILP+
Sbjct: 589 CKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDS 648
Query: 664 YTYTILINENCNAGNWQEALRLYKE 688
YTYT LI+ C G A+ KE
Sbjct: 649 YTYTSLISGLCRKGKTVIAILFAKE 673
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 183/604 (30%), Positives = 305/604 (50%), Gaps = 18/604 (2%)
Query: 90 PELL---VRVLNRIREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWV 146
P LL V + + ++ P AL F + + G K + +++E L G + V
Sbjct: 3 PPLLPKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEV 62
Query: 147 -VETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL 205
V+ V H + V +G + Y +K V++ + VF +M
Sbjct: 63 LVDMRENVGNHMLEGVYVGA--------------MKNYGRKGKVQEAVNVFERMDFYDCE 108
Query: 206 PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALEL 265
P V + N I+ VL D+G+ +A +VY M + GI P + ++ + SFCK AL L
Sbjct: 109 PTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRL 168
Query: 266 LWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE 325
L M +GC N V Y ++ GF + L ML G+ + ++N ++ +
Sbjct: 169 LNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCK 228
Query: 326 KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIIS 385
KG + E L ++++ RGV P L TYN+ I GLC+ G + A ++ + PD+I+
Sbjct: 229 KGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVIT 288
Query: 386 YNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMI 445
YN L+YG C++ EA + ++ + L P TYNTLI G C+ G +++A+++ + +
Sbjct: 289 YNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAV 348
Query: 446 NQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTS 505
G +PD TY +++G C G + A FNE L KG++P+ Y T I G G
Sbjct: 349 FNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMIL 408
Query: 506 EAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSII 565
EA +L EM KG P++ T+N+LV+GLCK+G + +A+ L++ M+ G+ PD T+ +I
Sbjct: 409 EAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468
Query: 566 HASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIR 625
H + ++ + ML G+ P + TY L++ + E + M KG
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528
Query: 626 PNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRL 685
PN+ T+N L+ LCR R++D+A GL +M+ + + P+ T+ LI+ C G+ A L
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTL 588
Query: 686 YKEM 689
+++M
Sbjct: 589 FRKM 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (761), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 156/531 (29%), Positives = 287/531 (54%), Gaps = 2/531 (0%)
Query: 195 VFNKMLRNGLLPDVKNCNRIIKVL-RDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSF 253
+F M+++ P + ++++ + + N F + + M GI ++ TY+ +++ F
Sbjct: 68 LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDL-VISLGEQMQNLGISHNLYTYSILINCF 126
Query: 254 CKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSA 313
C+ ++ AL +L +M G P+ VT N L+ GF + A L+ M+++G + +
Sbjct: 127 CRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDS 186
Query: 314 HSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFE 373
++N +I G EA+ L + MV +G P L TY I++ GLCK G + A +
Sbjct: 187 FTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKK 246
Query: 374 MLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGD 433
M + + P ++ YNT++ C N+ +A LF E+ ++ + P VVTYN+LI LC YG
Sbjct: 247 MEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR 306
Query: 434 LEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTT 493
A +L +MI + I P+V+T++ +++ K G L A + ++EM+++ + PD F Y++
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 366
Query: 494 QIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDG 553
I G EA + E M++K P+++TYN L+ G CK ++E EL R+M G
Sbjct: 367 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG 426
Query: 554 FIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAF 613
+ + +TYT++IH + + + +F M+ G+ P ++TY++L+ G++E A
Sbjct: 427 LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETAL 486
Query: 614 MYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINEN 673
+ F +Q + P++ TYN +I G+C+ +++ + LF + +G+ PN TYT +++
Sbjct: 487 VVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGF 546
Query: 674 CNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHAVEYLESL 724
C G +EA L++EM + PD T++ L+ L K + E + +
Sbjct: 547 CRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (753), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 200/667 (29%), Positives = 325/667 (48%), Gaps = 64/667 (9%)
Query: 78 WVSDHFQAVVSDPELLVRVLNRIREKP--RIALRFFRWVETQPGVKRDEFVFCTILEILI 135
+ S H A+ S V++L+ +R +P ALR F +P + ++ IL L
Sbjct: 38 FASPHSAALSSTD---VKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLG 94
Query: 136 ESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLI--YTKKSMVEQCL 193
SG ++E + SS + L+LI Y + + ++ L
Sbjct: 95 RSGSFDDMKKILEDMK----------------SSRCEMGTSTFLILIESYAQFELQDEIL 138
Query: 194 LVFNKMLRN-GLLPDVKNCNRIIKVLRDNGFSVKAREV-YRMMGEFGIKPSIVTYNTMLD 251
V + M+ GL PD NR++ +L D G S+K E+ + M +GIKP + T+N ++
Sbjct: 139 SVVDWMIDEFGLKPDTHFYNRMLNLLVD-GNSLKLVEISHAKMSVWGIKPDVSTFNVLIK 197
Query: 252 SFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV 311
+ C+ +++ A+ +L +M G P+ T+ ++ G+ G+L+ A + M++ G
Sbjct: 198 ALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSW 257
Query: 312 SAHSYNPIICGYSEKGLLVEALNLEEEMVTR-GVAPTLATYNILIYGLCKWGRVSDARHR 370
S S N I+ G+ ++G + +ALN +EM + G P T+N L+ GLCK G V A
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317
Query: 371 FFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR 430
ML++ PD+ +YN+++ G C+ G + EA + D++ +R+ P VTYNTLI LC+
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCK 377
Query: 431 YGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRF- 489
+E A +L + ++GILPDV T+ ++ G C N +A E F EM KG +PD F
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFT 437
Query: 490 ----------------------------------AYTTQIAGELKLGDTSEAYRLQEEML 515
Y T I G K T EA + +EM
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEME 497
Query: 516 AKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLR 575
G + +TYN L+ GLCK +E+A +L+ +M+ +G PD TY S++ GD++
Sbjct: 498 VHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIK 557
Query: 576 RGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALI 635
+ D+ M G P +VTY LI GR+E+A +Q+KGI YN +I
Sbjct: 558 KAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVI 617
Query: 636 NGLCRLRRIDQAYGLFIDM-EEEGILPNKYTYTILINENCNAGN-WQEALRLYKEMLDRE 693
GL R R+ +A LF +M E+ P+ +Y I+ CN G +EA+ E+L++
Sbjct: 618 QGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKG 677
Query: 694 IEPDYCT 700
P++ +
Sbjct: 678 FVPEFSS 684
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (751), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 188/635 (29%), Positives = 312/635 (49%), Gaps = 35/635 (5%)
Query: 93 LVRVLNRIREKPRIALRFFRWVETQPGVKRDEFV--FCTILEILIESGLLRSAYWVVETV 150
L+ VL +I+ R+ L FF W + +RD + C ++ + + S L+ A ++ +
Sbjct: 90 LIWVLMKIKCDYRLVLDFFDWARS----RRDSNLESLCIVIHLAVASKDLKVAQSLISSF 145
Query: 151 VCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKN 210
+ D + + DLL+ Y + VF
Sbjct: 146 WERPKLNVTDSFV----------QFFDLLVYTYKDWGSDPRVFDVF-------------- 181
Query: 211 CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG-EMQEALELLWEM 269
+VL D G +AR V+ M +G+ S+ + N L K+ + A+ + E
Sbjct: 182 ----FQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREF 237
Query: 270 QGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLL 329
G N +YN++I + G +++A L+ M G SY+ ++ GY G L
Sbjct: 238 PEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGEL 297
Query: 330 VEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTL 389
+ L E M +G+ P Y +I LC+ ++++A F EM+R+ ++PD + Y TL
Sbjct: 298 DKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTL 357
Query: 390 LYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGI 449
+ G+C+ G+I A F E+ SR++ P V+TY +I G C+ GD+ A +L M +G+
Sbjct: 358 IDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL 417
Query: 450 LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYR 509
PD +T+T ++NG CK G++ A N M++ G P+ YTT I G K GD A
Sbjct: 418 EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 477
Query: 510 LQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASL 569
L EM G P++ TYN +V+GLCK G++EEA +L+ + G D +TYT+++ A
Sbjct: 478 LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYC 537
Query: 570 EMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI 629
+ G++ + +++ ML KGL PT+VT+ VL++ G LE + M KGI PN
Sbjct: 538 KSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNAT 597
Query: 630 TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEM 689
T+N+L+ C + A ++ DM G+ P+ TY L+ +C A N +EA L++EM
Sbjct: 598 TFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM 657
Query: 690 LDREIEPDYCTHSALLLKQLDKDYKVHAVEYLESL 724
+ T+S L+ L + + A E + +
Sbjct: 658 KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQM 692
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (749), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 180/624 (28%), Positives = 305/624 (48%), Gaps = 18/624 (2%)
Query: 104 PRIALRFFRWVETQPGVKRDEFVFCTILEILIESG-----------LLRSAYWVVETVVC 152
P+ AL F W+ P K + + ++L +LI +G +++S V + +
Sbjct: 103 PKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYV 162
Query: 153 VNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN 212
+++ ++ L + I + LL + +V++ V+ +ML + + P++ N
Sbjct: 163 LDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYN 222
Query: 213 RIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR 272
+++ G +A + + E G+ P TY +++ +C+ ++ A ++ EM +
Sbjct: 223 KMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLK 282
Query: 273 GCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPII---CGYSEKGLL 329
GC N V Y LI G +++A L M + +Y +I CG K
Sbjct: 283 GCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKS-- 340
Query: 330 VEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTL 389
EALNL +EM G+ P + TY +LI LC + AR +ML K ++P++I+YN L
Sbjct: 341 -EALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNAL 399
Query: 390 LYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGI 449
+ GYC+ G I +A + + + SR L P TYN LI G C+ ++ A + M+ + +
Sbjct: 400 INGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKV 458
Query: 450 LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYR 509
LPDV+TY +++G C+ GN A + M +GL PD++ YT+ I K EA
Sbjct: 459 LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACD 518
Query: 510 LQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASL 569
L + + KG P+++ Y L+ G CK G ++EA+ +L KM+ +P+ +T+ ++IH
Sbjct: 519 LFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLC 578
Query: 570 EMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI 629
G L+ L M++ GL PT+ T T+LIH G + A+ F +M G +P+
Sbjct: 579 ADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAH 638
Query: 630 TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEM 689
TY I CR R+ A + M E G+ P+ +TY+ LI + G A + K M
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698
Query: 690 LDREIEPDYCTHSALLLKQLDKDY 713
D EP T +L+ L+ Y
Sbjct: 699 RDTGCEPSQHTFLSLIKHLLEMKY 722
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 161/533 (30%), Positives = 274/533 (51%), Gaps = 34/533 (6%)
Query: 206 PDVKNCNRIIKVL-RDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALE 264
P K+ N ++++L N V A Y M+ I P++ T+ ++ +FC E+ AL
Sbjct: 180 PTFKSYNVVLEILVSGNCHKVAANVFYDMLSR-KIPPTLFTFGVVMKAFCAVNEIDSALS 238
Query: 265 LLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324
LL +M GC PN V Y LI S+ + +A L+ +M +G A ++N +I G
Sbjct: 239 LLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC 298
Query: 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRK------- 377
+ + EA + M+ RG AP TY L+ GLCK GRV A+ F+ + +
Sbjct: 299 KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNT 358
Query: 378 -------------------------NVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSR 412
++PD+ +YN+L+YGY + G +G A + ++R++
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 413 NLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMA 472
P V +Y L+DG C+ G ++ A + M G+ P+ + + +++ CK + A
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478
Query: 473 REFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHG 532
E F EM RKG +PD + + + I+G ++ + A L +M+++G + +TYN L++
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538
Query: 533 LCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT 592
+ G ++EA +L+ +MV G D ITY S+I G++ + R LF MLR G +P+
Sbjct: 539 FLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPS 598
Query: 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFI 652
++ +LI+ G +E A + EM ++G P+++T+N+LINGLCR RI+ +F
Sbjct: 599 NISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFR 658
Query: 653 DMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALL 705
++ EGI P+ T+ L++ C G +A L E ++ P++ T S LL
Sbjct: 659 KLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILL 711
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| 225424122 | 718 | PREDICTED: pentatricopeptide repeat-cont | 0.979 | 0.994 | 0.656 | 0.0 | |
| 297737746 | 1078 | unnamed protein product [Vitis vinifera] | 0.971 | 0.656 | 0.655 | 0.0 | |
| 255570715 | 729 | pentatricopeptide repeat-containing prot | 0.969 | 0.969 | 0.610 | 0.0 | |
| 449435202 | 717 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.957 | 0.973 | 0.591 | 0.0 | |
| 449493486 | 772 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.957 | 0.904 | 0.591 | 0.0 | |
| 356551209 | 687 | PREDICTED: pentatricopeptide repeat-cont | 0.893 | 0.947 | 0.627 | 0.0 | |
| 356554658 | 675 | PREDICTED: pentatricopeptide repeat-cont | 0.871 | 0.940 | 0.634 | 0.0 | |
| 357438771 | 988 | Pentatricopeptide repeat-containing prot | 0.923 | 0.681 | 0.554 | 0.0 | |
| 147819071 | 847 | hypothetical protein VITISV_043106 [Viti | 0.698 | 0.600 | 0.652 | 0.0 | |
| 15219974 | 718 | pentatricopeptide repeat-containing prot | 0.975 | 0.990 | 0.489 | 0.0 |
| >gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/724 (65%), Positives = 583/724 (80%), Gaps = 10/724 (1%)
Query: 1 MTLCIRASKALSAHSYHYFYLKKVRFFFPFCFSVHTYPSISESNNKDSVLNPESESYYKE 60
MTLC+RASKA + + + KVR FP FS H S SN+ P SE+++++
Sbjct: 1 MTLCLRASKA--SATINPTRSIKVRLLFPCSFSFHD----STSNHSAP---PFSETHFQD 51
Query: 61 LIISTVEEKPWAFCNNRWVSDHFQAVVSDPELLVRVLNRIREKPRIALRFFRWVETQPGV 120
+I ++ EKP F N W+S F V+ DP+L VRVL+ R PR+ALR FRW E+QPG
Sbjct: 52 VISKSIREKPSNFSNYYWLSHQFGPVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGF 111
Query: 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLL 180
+R EFVFC ILEIL ++ L+RSAYWV+E V+ NMH I+DVLIGG +SS VS+KILDLL+
Sbjct: 112 RRSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLI 171
Query: 181 LIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIK 240
+Y+KKSMVEQCL VF+KM+++ L PDVKNCNRI+++LRD KA EVYR MGEFGIK
Sbjct: 172 WVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIK 231
Query: 241 PSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGL 300
P+IVTYNT+LDS+CK G++Q+ L+LL EMQ RGC+PN VTYNVLI G S+ GE EQA+GL
Sbjct: 232 PTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGL 291
Query: 301 IRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK 360
I +MLK GLKVSA++YNP+I GY KG+L EAL+L+EEMV +G +PT+ATYN IYGLCK
Sbjct: 292 IGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCK 351
Query: 361 WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVT 420
GR+SDA + +ML N++PD++SYNTL+YGYCR GN+ +AFLLFDELRS L PT+VT
Sbjct: 352 LGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVT 411
Query: 421 YNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEML 480
YNTL+DGLCR G+LEVAQQLK MIN+GI PD++TYTI+VNGSCKMG+LSMA+EFF+EML
Sbjct: 412 YNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEML 471
Query: 481 RKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLE 540
+GL+ D +AY T+I GELKLGDTS A+ LQEEMLAKGFPPDLI YNV+V GLCKLG+LE
Sbjct: 472 HEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLE 531
Query: 541 EANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLI 600
EA+ELL+KMV DG IPD++TYTSIIHA LE G LR+GR++F ML KGL+P++VTYTVLI
Sbjct: 532 EASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLI 591
Query: 601 HAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL 660
H HA +GRLE AF+YFSEMQ KGI PNVITYN+LINGLC++RR+DQAY F +M E+GI
Sbjct: 592 HGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIF 651
Query: 661 PNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHAVEY 720
PNKY+YTILINENCN GNWQEAL LYK+MLDR ++PD CTHSA LLKQL KD K+ AV
Sbjct: 652 PNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSA-LLKQLGKDCKLQAVRQ 710
Query: 721 LESL 724
LESL
Sbjct: 711 LESL 714
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/718 (65%), Positives = 579/718 (80%), Gaps = 10/718 (1%)
Query: 1 MTLCIRASKALSAHSYHYFYLKKVRFFFPFCFSVHTYPSISESNNKDSVLNPESESYYKE 60
MTLC+RASKA + + + KVR FP FS H S SN+ P SE+++++
Sbjct: 1 MTLCLRASKA--SATINPTRSIKVRLLFPCSFSFHD----STSNHSAP---PFSETHFQD 51
Query: 61 LIISTVEEKPWAFCNNRWVSDHFQAVVSDPELLVRVLNRIREKPRIALRFFRWVETQPGV 120
+I ++ EKP F N W+S F V+ DP+L VRVL+ R PR+ALR FRW E+QPG
Sbjct: 52 VISKSIREKPSNFSNYYWLSHQFGPVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGF 111
Query: 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLL 180
+R EFVFC ILEIL ++ L+RSAYWV+E V+ NMH I+DVLIGG +SS VS+KILDLL+
Sbjct: 112 RRSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLI 171
Query: 181 LIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIK 240
+Y+KKSMVEQCL VF+KM+++ L PDVKNCNRI+++LRD KA EVYR MGEFGIK
Sbjct: 172 WVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIK 231
Query: 241 PSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGL 300
P+IVTYNT+LDS+CK G++Q+ L+LL EMQ RGC+PN VTYNVLI G S+ GE EQA+GL
Sbjct: 232 PTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGL 291
Query: 301 IRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK 360
I +MLK GLKVSA++YNP+I GY KG+L EAL+L+EEMV +G +PT+ATYN IYGLCK
Sbjct: 292 IGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCK 351
Query: 361 WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVT 420
GR+SDA + +ML N++PD++SYNTL+YGYCR GN+ +AFLLFDELRS L PT+VT
Sbjct: 352 LGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVT 411
Query: 421 YNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEML 480
YNTL+DGLCR G+LEVAQQLK MIN+GI PD++TYTI+VNGSCKMG+LSMA+EFF+EML
Sbjct: 412 YNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEML 471
Query: 481 RKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLE 540
+GL+ D +AY T+I GELKLGDTS A+ LQEEMLAKGFPPDLI YNV+V GLCKLG+LE
Sbjct: 472 HEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLE 531
Query: 541 EANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLI 600
EA+ELL+KMV DG IPD++TYTSIIHA LE G LR+GR++F ML KGL+P++VTYTVLI
Sbjct: 532 EASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLI 591
Query: 601 HAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL 660
H HA +GRLE AF+YFSEMQ KGI PNVITYN+LINGLC++RR+DQAY F +M E+GI
Sbjct: 592 HGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIF 651
Query: 661 PNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHAV 718
PNKY+YTILINENCN GNWQEAL LYK+MLDR ++PD CTHSA LLKQL KD K+ AV
Sbjct: 652 PNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSA-LLKQLGKDCKLQAV 708
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/744 (61%), Positives = 574/744 (77%), Gaps = 37/744 (4%)
Query: 1 MTLCIRASKALSAHSYHYFYLK-----------KVRFFFPFCFSV-HTY-PSISESNNK- 46
MTL +RASKAL S +VRF FP S+ H Y PSI+ S +
Sbjct: 1 MTLSLRASKALWISSSSSSCYFYYYSFTNANTLEVRFLFPSSVSLFHNYSPSIASSKHTT 60
Query: 47 -DSVLNPESESYYKELIISTVEEKPWAFCNNRWVSDHFQAVVSDPELLVRVLNRIREKPR 105
+S + + + YK+LI +T++EKPWAFCN WVSD F +V++DP+LL+RVL IREKP
Sbjct: 61 VESTIQSIAVAPYKDLIFNTIQEKPWAFCNQNWVSDKFNSVITDPQLLIRVLYSIREKPT 120
Query: 106 IALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGG 165
IALRFF+ V TQPG K E+ FC IL+IL+++ L++SAYWV+E ++ M+GI+DVLIGG
Sbjct: 121 IALRFFKCVLTQPGFKTSEYAFCAILQILVDNCLMKSAYWVMERIISFEMYGIVDVLIGG 180
Query: 166 GLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSV 225
L+ QCLLVF KM+RN LPDVKNCNRI+K+LRD V
Sbjct: 181 YLNY---------------------QCLLVFEKMMRNRFLPDVKNCNRILKILRDKNLLV 219
Query: 226 KAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLI 285
KA EVYRMMGE+GI+P++ TYNTML SFCK GE+Q AL+L+ +MQ RGC P+ VT+NVLI
Sbjct: 220 KALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLI 279
Query: 286 TGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVA 345
G S+ GEL+QA+GLI++M K GL+VS ++YNP+ICGY +KGLLVEAL L EEMVTRGV+
Sbjct: 280 NGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVS 339
Query: 346 PTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLL 405
PT+A++N ++YG CK G++SDAR + +ML+KN++PDIISYNTL+YG+CR GNIGEAF+L
Sbjct: 340 PTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFIL 399
Query: 406 FDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCK 465
DELR RNL +VTYNTLIDGLCR GDLE A +LKE+MIN+GI PDV+TYT++VNG+CK
Sbjct: 400 LDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACK 459
Query: 466 MGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLIT 525
+GN+ MA+EFF+EML GL PD+FAYT +I GELKLGDT++A++LQEEML KGFPPD+IT
Sbjct: 460 LGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVIT 519
Query: 526 YNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNML 585
YNV V+GLCKLG+LEEA ELL+KM+ DG +PDH+TYTS +HA +E G LR GR++F +ML
Sbjct: 520 YNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDML 579
Query: 586 RKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRID 645
+G +PT+VTYTVLIHAHA GRL+ A YF EMQ KG+ PNVITYN LING C++R++D
Sbjct: 580 SRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMD 639
Query: 646 QAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALL 705
QA FI+M+E+GI PNKYTYTILINENCN G WQEALRLY +ML + I PD CTH A L
Sbjct: 640 QACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGA-L 698
Query: 706 LKQLDKDYKVHAVEYLESLTLGAE 729
LK+LDKDYKV AV+++ESL L +
Sbjct: 699 LKKLDKDYKVQAVQFIESLILDGD 722
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/729 (59%), Positives = 548/729 (75%), Gaps = 31/729 (4%)
Query: 1 MTLCIRASKALSAHSYHYFYLKKVRFFFPFCFSVHTYPSISESNNKDSVLNPESESYYKE 60
+ C+RASKA+ ++ Y + KVR FPF +H+ NN + L SE++Y++
Sbjct: 3 LCFCVRASKAIVTNAAIYPFCFKVRRLFPFSSFLHS----CTLNNAIATL---SETHYRD 55
Query: 61 LIISTVEEKPWAFCNNRWVSDHFQAVVSDPELLVRVLNRIREKPRIALRFFRWVETQPGV 120
LI T++EKPWAFC N WVSD F AV++DP L +RVL+ +R +PR+ALRFFRWV QP
Sbjct: 56 LIFDTIKEKPWAFCKNNWVSDQFGAVITDPHLFIRVLHSMRIRPRVALRFFRWVMAQPDF 115
Query: 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLL 180
K EFVFC IL+IL+ + L+ +AYWV+E VV MHG++DVLI G +
Sbjct: 116 KESEFVFCAILDILVGNDLMHAAYWVMERVVSFEMHGVVDVLIAGHVX------------ 163
Query: 181 LIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIK 240
CLLVF+KM+RNGLLPDVKNCNRI++VLRD KA+ VY MM +FGIK
Sbjct: 164 -----------CLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIK 212
Query: 241 PSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGL 300
P++VTYNTMLDS+CKEG + +ALELL EMQ RGC PN VTYNVL+ G S+ GELEQA+GL
Sbjct: 213 PTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGL 272
Query: 301 IRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK 360
I +ML GL VSA++YNP+I G+ +KGL VEA +L EEMV R PTL+TYN L+YGLCK
Sbjct: 273 IEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCK 332
Query: 361 WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVT 420
W +V+ R RF +ML+ PDI+S+N+LLYGYCR+G I EAFLLFDEL+ R+LVPTV+T
Sbjct: 333 WVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVIT 392
Query: 421 YNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEML 480
YNTLI GLC +G L+ A +LK+ M +QG+ PD+ TYTI+VNG K+G +SMAR FFNEML
Sbjct: 393 YNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEML 452
Query: 481 RKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLE 540
KGL+PDRFAY T+I GE+K+ DTS A+ +QEEMLA GFPPD+ITYNV VH LC+ G+ E
Sbjct: 453 SKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFE 512
Query: 541 EANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLI 600
EA +LL MV DG IPDH+TYTSII+ ++ G LR+ R++FN ML KG++P++VTYTVLI
Sbjct: 513 EACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLI 572
Query: 601 HAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL 660
HAHAA+ L+LAFMYFS+M K + NVITYNA+INGLC RR+D+AY F +MEE+GIL
Sbjct: 573 HAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGIL 632
Query: 661 PNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHAVEY 720
PNK++YTILINE+CN G W+EALRLY+EMLDR+I+PD THS + LK L +DY+VHAV+
Sbjct: 633 PNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHS-VFLKNLHRDYQVHAVQC 691
Query: 721 LESLTLGAE 729
+ESL E
Sbjct: 692 VESLIQNVE 700
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/729 (59%), Positives = 548/729 (75%), Gaps = 31/729 (4%)
Query: 1 MTLCIRASKALSAHSYHYFYLKKVRFFFPFCFSVHTYPSISESNNKDSVLNPESESYYKE 60
+ C+RASKA+ ++ Y + KVR FPF +H+ NN + L SE++Y++
Sbjct: 3 LCFCVRASKAIVTNAAIYPFCFKVRRLFPFSSFLHS----CTLNNAIATL---SETHYRD 55
Query: 61 LIISTVEEKPWAFCNNRWVSDHFQAVVSDPELLVRVLNRIREKPRIALRFFRWVETQPGV 120
LI T++EKPWAFC N WVSD F AV++DP L +RVL+ +R +PR+ALRFFRWV QP
Sbjct: 56 LIFDTIKEKPWAFCKNNWVSDQFGAVITDPHLFIRVLHSMRIRPRVALRFFRWVMAQPDF 115
Query: 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLL 180
K EFVFC IL+IL+ + L+ +AYWV+E VV MHG++DVLI G +
Sbjct: 116 KESEFVFCAILDILVGNDLMHAAYWVMERVVSFEMHGVVDVLIAGHVX------------ 163
Query: 181 LIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIK 240
CLLVF+KM+RNGLLPDVKNCNRI++VLRD KA+ VY MM +FGIK
Sbjct: 164 -----------CLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIK 212
Query: 241 PSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGL 300
P++VTYNTMLDS+CKEG + +ALELL EMQ RGC PN VTYNVL+ G S+ GELEQA+GL
Sbjct: 213 PTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGL 272
Query: 301 IRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK 360
I +ML GL VSA++YNP+I G+ +KGL VEA +L EEMV R PTL+TYN L+YGLCK
Sbjct: 273 IEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCK 332
Query: 361 WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVT 420
W +V+ R RF +ML+ PDI+S+N+LLYGYCR+G I EAFLLFDEL+ R+LVPTV+T
Sbjct: 333 WVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVIT 392
Query: 421 YNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEML 480
YNTLI GLC +G L+ A +LK+ M +QG+ PD+ TYTI+VNG K+G +SMAR FFNEML
Sbjct: 393 YNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEML 452
Query: 481 RKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLE 540
KGL+PDRFAY T+I GE+K+ DTS A+ +QEEMLA GFPPD+ITYNV VH LC+ G+ E
Sbjct: 453 SKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFE 512
Query: 541 EANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLI 600
EA +LL MV DG IPDH+TYTSII+ ++ G LR+ R++FN ML KG++P++VTYTVLI
Sbjct: 513 EACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLI 572
Query: 601 HAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL 660
HAHAA+ L+LAFMYFS+M K + NVITYNA+INGLC RR+D+AY F +MEE+GIL
Sbjct: 573 HAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGIL 632
Query: 661 PNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHAVEY 720
PNK++YTILINE+CN G W+EALRLY+EMLDR+I+PD THS + LK L +DY+VHAV+
Sbjct: 633 PNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHS-VFLKNLHRDYQVHAVQC 691
Query: 721 LESLTLGAE 729
+ESL E
Sbjct: 692 VESLIQNVE 700
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/657 (62%), Positives = 522/657 (79%), Gaps = 6/657 (0%)
Query: 75 NNRWVSDHFQAVVSDPELLVRVLNRIREKPRIALRFFRWVETQPGVKRDEFVFCTILEIL 134
NN+++ F A V++P+LLVRVLN +R +P +ALRFFRW E Q G KR E + IL+IL
Sbjct: 35 NNKFL---FHAAVAEPKLLVRVLNTVRNRPVVALRFFRWAERQTGFKRSEISYSVILDIL 91
Query: 135 IESGLLRSAYWVVETVVCVNM-HGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCL 193
+GL+RSAY V+E VV V M +G++DV+ +S ILDLLL IY KKS++E+CL
Sbjct: 92 ARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKLILDLLLWIYVKKSLLEKCL 151
Query: 194 LVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVK-AREVYRMMGEFGIKPSIVTYNTMLDS 252
LVF KM+ GLLPDVKNCNR++++LRD ++ AREVY +M E GI P++VTYNTMLDS
Sbjct: 152 LVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDS 211
Query: 253 FCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVS 312
FCK+G +QEAL+LL++MQ GCSPN VTYNVL+ G S +GE+EQA+ LI+DML+LGL+VS
Sbjct: 212 FCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVS 271
Query: 313 AHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFF 372
++Y+P+I GY EKG + EA L EEM++RG PT+ TYN ++YGLCKWGRVSDAR
Sbjct: 272 VYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLD 331
Query: 373 EMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYG 432
M+ KN++PD++SYNTL+YGY R GNIGEAFLLF ELR R+L P+VVTYNTLIDGLCR G
Sbjct: 332 VMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLG 391
Query: 433 DLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYT 492
DL+VA +LK+ MI G PDV T+T V G CKMGNL MA+E F+EML +GLQPDRFAY
Sbjct: 392 DLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYI 451
Query: 493 TQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGD 552
T+I GELKLGD S+A+ +QEEMLA+GFPPDLITYNV + GL KLG+L+EA+EL++KM+ +
Sbjct: 452 TRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYN 511
Query: 553 GFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELA 612
G +PDH+TYTSIIHA L G LR+ R LF ML KG+ P++VTYTVLIH++A RGRL+LA
Sbjct: 512 GLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLA 571
Query: 613 FMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINE 672
++F EM KG+ PNVITYNALINGLC++R++DQAY F +M+ +GI PNKYTYTILINE
Sbjct: 572 ILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINE 631
Query: 673 NCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHAVEYLESLTLGAE 729
NCN G+WQEALRLYK+MLDREI+PD CTH + LLK L+KDYK+H V +LE++ E
Sbjct: 632 NCNLGHWQEALRLYKDMLDREIQPDSCTHRS-LLKHLNKDYKLHVVRHLENVIAAGE 687
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/648 (63%), Positives = 514/648 (79%), Gaps = 13/648 (2%)
Query: 83 FQAVVSDPELLVRVLNRIREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRS 142
F A V++P+LLVRVLN +R +P +ALRFFRW E Q G KR E + IL+IL +GL+RS
Sbjct: 40 FHAAVAEPQLLVRVLNTVRHRPAVALRFFRWAERQTGFKRSELTYAVILDILARNGLMRS 99
Query: 143 AYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202
AY V+E VV V M + V + ILDLLL IY KKSM+E+CLLVF KM+
Sbjct: 100 AYCVMEKVVSVKME-----------NGVVDVLILDLLLWIYAKKSMLEKCLLVFYKMVSK 148
Query: 203 GLLPDVKNCNRIIKVLRDNGFSVK-AREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQE 261
G+LPD+KNCNR++++LRD S+ AREVY +M E GI+P++VTYNTMLDSFCK+G++QE
Sbjct: 149 GMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQE 208
Query: 262 ALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIIC 321
AL+LL +MQ GC PN VTYNVL+ G S +GELEQA+ LI++ML+LGL+VSA++Y+P+I
Sbjct: 209 ALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIR 268
Query: 322 GYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP 381
GY EKG L EA L EEM++RG PTL TYN ++YGLCKWGRVSDAR M+ KN++P
Sbjct: 269 GYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMP 328
Query: 382 DIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLK 441
D++SYNTL+YGY R GNIGEAFLLF ELR R LVP+VVTYNTLIDGLCR GDL+VA +LK
Sbjct: 329 DLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLK 388
Query: 442 ENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKL 501
+ MI G PDV T+TI+V G CK+GNL MA+E F+EML +GLQPDRFAY T+I GELKL
Sbjct: 389 DEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKL 448
Query: 502 GDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITY 561
GD S+A+ +QEEMLA+GFPPDLITYNV + GL KLG+L+EA+EL++KM+ +G +PDH+TY
Sbjct: 449 GDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTY 508
Query: 562 TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621
TSIIHA L G LR+ R +F ML KG+ P++VTYTVLIH++A RGRL+LA ++F EM
Sbjct: 509 TSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHE 568
Query: 622 KGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQE 681
KG+ PNVITYNALINGLC++R++DQAY F +M+ +GI PNKYTYTILINENCN G+WQE
Sbjct: 569 KGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQE 628
Query: 682 ALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHAVEYLESLTLGAE 729
ALRLYK+MLDREI+PD CTHSA LLK L+KDYK H V +LE++ E
Sbjct: 629 ALRLYKDMLDREIQPDSCTHSA-LLKHLNKDYKSHVVRHLENVIAAGE 675
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/687 (55%), Positives = 515/687 (74%), Gaps = 14/687 (2%)
Query: 52 PESESYYKELIISTVEEKP----WAFCNNRWVSD----HFQAVVSDPELLVRVLNRIREK 103
P S +++ + I T+ KP + F N + + HF + V+ PE L+RVLN ++ +
Sbjct: 7 PSSTTFFSKTI--TLFLKPHFRFYPFSTNPQIDNSVNPHFHSAVTQPEFLLRVLNSVKHR 64
Query: 104 PRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHG-ILDVL 162
P ALRFFRWVE QP R E F IL+IL ++G ++ AYWV+E + V + G +LDVL
Sbjct: 65 PLTALRFFRWVEKQPNFHRSETAFVAILDILAKNGFMKPAYWVMEKAIEVKVDGGVLDVL 124
Query: 163 --IGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRD 220
IG G +S VS+K+LDLL+ ++ KK ++E+CL+VF KM+ NGLLPDV+NCNR++K+L+D
Sbjct: 125 VGIGCGRNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKD 184
Query: 221 NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVT 280
+ EVY +M + I+P+IVT+NTM+DS CKEGE+ A+E+L M+ GC PN V+
Sbjct: 185 KSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVS 244
Query: 281 YNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMV 340
YNVL+ G S GE ++A+ LI M LGLKVSAH+YNP+I G+ +K + EA +L EM+
Sbjct: 245 YNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREML 304
Query: 341 TRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIG 400
RG PT+ TYN ++Y LC+ GRVSDAR M+ ++++PD++SYNTL+YGY R GN
Sbjct: 305 GRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFA 364
Query: 401 EAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMV 460
EA LLF ELRS+NLVP+VVTYNTLIDG CR G+L++A+ +K++MI G+ PDV+T+TI+V
Sbjct: 365 EALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILV 424
Query: 461 NGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFP 520
G C+MGNL MA+E F+EML +GL+PD AYTT+I GELKLG+ S+A+ ++EEM A+GFP
Sbjct: 425 RGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFP 484
Query: 521 PDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDL 580
PDLITYNVL++GLCKLG+ ++ANEL++KM +G +PDH+TYTSIIHA L G LR+ ++
Sbjct: 485 PDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEV 544
Query: 581 FNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCR 640
F++ML+KG+ P++VTYTVLIH++A RGRL+ A YF EMQ KG+ PNVITYNALI GLC+
Sbjct: 545 FSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCK 604
Query: 641 LRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT 700
+D AY LF +ME +G+ PNKYTYTILINEN N WQ+AL+LYK+MLDREI+PD CT
Sbjct: 605 ENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCT 664
Query: 701 HSALLLKQLDKDYKVHAVEYLESLTLG 727
HSA L+K L KDYK+ AV LE+L L
Sbjct: 665 HSA-LMKHLSKDYKLLAVLRLENLPLA 690
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/510 (65%), Positives = 416/510 (81%), Gaps = 1/510 (0%)
Query: 40 ISESNNKDSVLNPE-SESYYKELIISTVEEKPWAFCNNRWVSDHFQAVVSDPELLVRVLN 98
+SE K +V P SE++++++I ++ EKP F N W+S F V+ DP+L VRVL+
Sbjct: 336 VSEEKVKVAVCTPPFSETHFQDVISKSIREKPSNFSNYYWLSHQFGPVIVDPDLFVRVLS 395
Query: 99 RIREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGI 158
R PR+ALR FRW E+QPG +R EFVFC ILEIL ++ L+RSAYWV+E V+ NMH I
Sbjct: 396 SFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRI 455
Query: 159 LDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVL 218
+DVLIGG +SS VS+KILDLL+ +Y+KKSMVEQCL VF+KM+++ L PDVKNCNRI+++L
Sbjct: 456 VDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRIL 515
Query: 219 RDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNG 278
RD KA EVYR MGEFGIKP+IVTYNT+LDS+CK G++Q+ L+LL EMQ RGC+PN
Sbjct: 516 RDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPND 575
Query: 279 VTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEE 338
VTYNVLI G S+ GE EQA+GLI +MLK GLKVSA++YNP+I GY KGLL EAL+L+EE
Sbjct: 576 VTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEE 635
Query: 339 MVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGN 398
MV +G +PT+ATYN IYGLCK GR+SDA + +ML N++PD++SYNTL+YGYCR GN
Sbjct: 636 MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGN 695
Query: 399 IGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTI 458
+ +AFLLFDELRS L PT+VTYNTL+DGLCR G+LEVAQQLK MIN+GI PD++TYTI
Sbjct: 696 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI 755
Query: 459 MVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKG 518
+VNGSCKMG+LSMA+EFF+EML +GL+ D +AY T+I GELKLGDTS A+ LQEEMLAKG
Sbjct: 756 LVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG 815
Query: 519 FPPDLITYNVLVHGLCKLGSLEEANELLRK 548
FPPDLI YNV+V GLCKLG+LEEA+ELL+K
Sbjct: 816 FPPDLIIYNVVVDGLCKLGNLEEASELLQK 845
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g22960, mitochondrial; Flags: Precursor gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/730 (48%), Positives = 491/730 (67%), Gaps = 19/730 (2%)
Query: 1 MTLCIRASKALSAHSYHYFYLKKVRFFFPFCFSVHTYPSISESNNKDSVLNPESESYYKE 60
+ LC+RAS++ + S RF F F T P + S+ S + ESYY
Sbjct: 5 LRLCLRASRSFFSISTTNNNNNLSRFLFRFS----TLPHCAASS---SSSSSNLESYYAN 57
Query: 61 LIISTVEE--KPWAFCNNRWVSDHFQAVVSDPELLVRVLNRIREKPRIALRFFRWVETQP 118
LI+S+ + KP N +W S F+ +++DP LL+RVLN IR KP IA RFF W++ Q
Sbjct: 58 LILSSHGDSNKP----NRKWSSHQFRLLLTDPNLLIRVLNMIRVKPEIAFRFFNWIQRQS 113
Query: 119 GVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDL 178
VK+ F +LEIL E+ L+ AY V E + + MH I D+LI G +++K+LDL
Sbjct: 114 DVKQSRQAFAAMLEILAENDLMSEAYLVAERSIDLGMHEIDDLLIDGSFDKLIALKLLDL 173
Query: 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG 238
LL +YTKKSM E+ LL F KM+R G LP V+NCN ++KVLRD+ KA VY M E G
Sbjct: 174 LLWVYTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHG 233
Query: 239 IKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQAR 298
I P+++T+NTMLDS K G+++ ++ EM+ R + VTYN+LI GFS+NG++E+AR
Sbjct: 234 IMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEAR 293
Query: 299 GLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGL 358
DM + G V+ +S+NP+I GY ++GL +A + +EM+ G+ PT +TYNI I L
Sbjct: 294 RFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICAL 353
Query: 359 CKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV 418
C +GR+ DAR E+L PD++SYNTL++GY + G EA LLFD+LR+ ++ P++
Sbjct: 354 CDFGRIDDAR----ELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSI 409
Query: 419 VTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNE 478
VTYNTLIDGLC G+LE AQ+LKE M Q I PDVITYT +V G K GNLSMA E ++E
Sbjct: 410 VTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDE 469
Query: 479 MLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKG-FPPDLITYNVLVHGLCKLG 537
MLRKG++PD +AYTT+ GEL+LGD+ +A+RL EEM+A PDL YNV + GLCK+G
Sbjct: 470 MLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVG 529
Query: 538 SLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYT 597
+L +A E RK+ G +PDH+TYT++I LE G + R+L++ MLRK L P+++TY
Sbjct: 530 NLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYF 589
Query: 598 VLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEE 657
VLI+ HA GRLE AF Y +EM+ +G+RPNV+T+NAL+ G+C+ ID+AY MEEE
Sbjct: 590 VLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEE 649
Query: 658 GILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHA 717
GI PNKY+YT+LI++NC+ W+E ++LYKEMLD+EIEPD TH A L K L+KD++
Sbjct: 650 GIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRA-LFKHLEKDHESRE 708
Query: 718 VEYLESLTLG 727
VE+LE L L
Sbjct: 709 VEFLERLLLS 718
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| TAIR|locus:2017754 | 718 | AT1G22960 [Arabidopsis thalian | 0.972 | 0.987 | 0.491 | 1.6e-182 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.905 | 0.905 | 0.289 | 2.5e-81 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.886 | 0.864 | 0.303 | 2.2e-80 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.695 | 0.664 | 0.323 | 6.2e-78 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.733 | 0.849 | 0.290 | 3.9e-76 | |
| TAIR|locus:2016427 | 904 | AT1G19290 [Arabidopsis thalian | 0.836 | 0.674 | 0.299 | 1.9e-74 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.831 | 0.662 | 0.290 | 2.5e-74 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.725 | 0.841 | 0.291 | 1.2e-72 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.821 | 0.794 | 0.305 | 3.2e-72 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.724 | 0.838 | 0.288 | 1.8e-71 |
| TAIR|locus:2017754 AT1G22960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1771 (628.5 bits), Expect = 1.6e-182, P = 1.6e-182
Identities = 359/730 (49%), Positives = 493/730 (67%)
Query: 1 MTLCIRASKALSAHSYHYFYLKKVRFFFPFCFSVHTYPSISESNNKDSVLNPESESYYKE 60
+ LC+RAS++ + S RF F F T P + S++ S ESYY
Sbjct: 5 LRLCLRASRSFFSISTTNNNNNLSRFLFRFS----TLPHCAASSSSSS---SNLESYYAN 57
Query: 61 LIISTVEE--KPWAFCNNRWVSDHFQAVVSDPELLVRVLNRIREKPRIALRFFRWVETQP 118
LI+S+ + KP N +W S F+ +++DP LL+RVLN IR KP IA RFF W++ Q
Sbjct: 58 LILSSHGDSNKP----NRKWSSHQFRLLLTDPNLLIRVLNMIRVKPEIAFRFFNWIQRQS 113
Query: 119 GVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDL 178
VK+ F +LEIL E+ L+ AY V E + + MH I D+LI G +++K+LDL
Sbjct: 114 DVKQSRQAFAAMLEILAENDLMSEAYLVAERSIDLGMHEIDDLLIDGSFDKLIALKLLDL 173
Query: 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG 238
LL +YTKKSM E+ LL F KM+R G LP V+NCN ++KVLRD+ KA VY M E G
Sbjct: 174 LLWVYTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHG 233
Query: 239 IKPSIVTYNTMLDSFCKEGEMQEALELLW-EMQGRGCSPNGVTYNVLITGFSRNGELEQA 297
I P+++T+NTMLDS K G++ E ++ +W EM+ R + VTYN+LI GFS+NG++E+A
Sbjct: 234 IMPTVITFNTMLDSCFKAGDL-ERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEA 292
Query: 298 RGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYG 357
R DM + G V+ +S+NP+I GY ++GL +A + +EM+ G+ PT +TYNI I
Sbjct: 293 RRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICA 352
Query: 358 LCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPT 417
LC +GR+ DAR E+L PD++SYNTL++GY + G EA LLFD+LR+ ++ P+
Sbjct: 353 LCDFGRIDDAR----ELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPS 408
Query: 418 VVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFN 477
+VTYNTLIDGLC G+LE AQ+LKE M Q I PDVITYT +V G K GNLSMA E ++
Sbjct: 409 IVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYD 468
Query: 478 EMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGF-PPDLITYNVLVHGLCKL 536
EMLRKG++PD +AYTT+ GEL+LGD+ +A+RL EEM+A PDL YNV + GLCK+
Sbjct: 469 EMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKV 528
Query: 537 GSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTY 596
G+L +A E RK+ G +PDH+TYT++I LE G + R+L++ MLRK L P+++TY
Sbjct: 529 GNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITY 588
Query: 597 TVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656
VLI+ HA GRLE AF Y +EM+ +G+RPNV+T+NAL+ G+C+ ID+AY MEE
Sbjct: 589 FVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEE 648
Query: 657 EGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH 716
EGI PNKY+YT+LI++NC+ W+E ++LYKEMLD+EIEPD TH AL K L+KD++
Sbjct: 649 EGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALF-KHLEKDHESR 707
Query: 717 AVEYLESLTL 726
VE+LE L L
Sbjct: 708 EVEFLERLLL 717
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 195/674 (28%), Positives = 341/674 (50%)
Query: 38 PSISESNNKDSVLNPESESYYKELIISTVEEKPWAFCNNRWVSDHFQAVVSDPELLVRVL 97
PS S S++ S S+S+ E I ++++ NN V +H + +P +V VL
Sbjct: 34 PSSSSSSSSSSASFSVSDSFLVEKICFSLKQG-----NNN-VRNHL--IRLNPLAVVEVL 85
Query: 98 NRIREKPRIALRFFRWVETQ-PGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMH 156
R R + RF + P K ++ IL+ SG L A + ++ +
Sbjct: 86 YRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGV 145
Query: 157 GILDVL--IGGGLSSCVSI-KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNR 213
L+++ + S+C S + DLL+ Y + + + F + G + CN
Sbjct: 146 SRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNA 205
Query: 214 IIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRG 273
+I L G+ A VY+ + G+ ++ T N M+++ CK+G+M++ L ++Q +G
Sbjct: 206 LIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKG 265
Query: 274 CSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEAL 333
P+ VTYN LI+ +S G +E+A L+ M G ++YN +I G + G A
Sbjct: 266 VYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAK 325
Query: 334 NLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGY 393
+ EM+ G++P TY L+ CK G V + F +M ++V+PD++ +++++ +
Sbjct: 326 EVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLF 385
Query: 394 CRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDV 453
RSGN+ +A + F+ ++ L+P V Y LI G CR G + VA L+ M+ QG DV
Sbjct: 386 TRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDV 445
Query: 454 ITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEE 513
+TY +++G CK L A + FNEM + L PD + T I G KLG+ A L ++
Sbjct: 446 VTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQK 505
Query: 514 MLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGD 573
M K D++TYN L+ G K+G ++ A E+ MV +P I+Y+ +++A G
Sbjct: 506 MKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGH 565
Query: 574 LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNA 633
L +++ M+ K + PT++ +I + G + +M +G P+ I+YN
Sbjct: 566 LAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNT 625
Query: 634 LINGLCRLRRIDQAYGLFIDMEEE--GILPNKYTYTILINENCNAGNWQEALRLYKEMLD 691
LI G R + +A+GL MEEE G++P+ +TY +++ C +EA + ++M++
Sbjct: 626 LIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIE 685
Query: 692 REIEPDYCTHSALL 705
R + PD T++ ++
Sbjct: 686 RGVNPDRSTYTCMI 699
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 206/678 (30%), Positives = 334/678 (49%)
Query: 64 STVEEKPWAFCNNRWVSDHFQAVVSDPELLVRVLNRIREKPRIALRFFRWVET-QPGVKR 122
S + +K F H + PE +L + + + L+F W Q R
Sbjct: 22 SLLADKALTFLKRHPYQLHHLSANFTPEAASNLLLKSQNDQALILKFLNWANPHQFFTLR 81
Query: 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSS----CVSIK-ILD 177
+ C L IL + L ++A + E V + L+ L C S + D
Sbjct: 82 CK---CITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFD 138
Query: 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKV-LRDNGFSVKAREVYRMMGE 236
L++ Y++ S++++ L + + +G +P V + N ++ +R A V++ M E
Sbjct: 139 LVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLE 198
Query: 237 FGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQ 296
+ P++ TYN ++ FC G + AL L +M+ +GC PN VTYN LI G+ + +++
Sbjct: 199 SQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDD 258
Query: 297 ARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIY 356
L+R M GL+ + SYN +I G +G + E + EM RG + TYN LI
Sbjct: 259 GFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIK 318
Query: 357 GLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVP 416
G CK G A EMLR + P +I+Y +L++ C++GN+ A D++R R L P
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCP 378
Query: 417 TVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFF 476
TY TL+DG + G + A ++ M + G P V+TY ++NG C G + A
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL 438
Query: 477 NEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKL 536
+M KGL PD +Y+T ++G + D EA R++ EM+ KG PD ITY+ L+ G C+
Sbjct: 439 EDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQ 498
Query: 537 GSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTY 596
+EA +L +M+ G PD TYT++I+A GDL + L N M+ KG+ P +VTY
Sbjct: 499 RRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY 558
Query: 597 TVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYN---------------ALINGLCRL 641
+VLI+ + R A ++ + P+ +TY+ +LI G C
Sbjct: 559 SVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMK 618
Query: 642 RRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTH 701
+ +A +F M + P+ Y I+I+ +C AG+ ++A LYKEM ++ + H
Sbjct: 619 GMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM----VKSGFLLH 674
Query: 702 SAL---LLKQLDKDYKVH 716
+ L+K L K+ KV+
Sbjct: 675 TVTVIALVKALHKEGKVN 692
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 164/507 (32%), Positives = 271/507 (53%)
Query: 183 YTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS 242
Y +K V++ + VF +M P V + N I+ VL D+G+ +A +VY M + GI P
Sbjct: 86 YGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPD 145
Query: 243 IVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIR 302
+ ++ + SFCK AL LL M +GC N V Y ++ GF + L
Sbjct: 146 VYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFG 205
Query: 303 DMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWG 362
ML G+ + ++N ++ +KG + E L ++++ RGV P L TYN+ I GLC+ G
Sbjct: 206 KMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRG 265
Query: 363 RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYN 422
+ A ++ + PD+I+YN L+YG C++ EA + ++ + L P TYN
Sbjct: 266 ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYN 325
Query: 423 TLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482
TLI G C+ G +++A+++ + + G +PD TY +++G C G + A FNE L K
Sbjct: 326 TLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK 385
Query: 483 GLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEA 542
G++P+ Y T I G G EA +L EM KG P++ T+N+LV+GLCK+G + +A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445
Query: 543 NELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHA 602
+ L++ M+ G+ PD T+ +IH + ++ + ML G+ P + TY L++
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505
Query: 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN 662
+ E + M KG PN+ T+N L+ LCR R++D+A GL +M+ + + P+
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565
Query: 663 KYTYTILINENCNAGNWQEALRLYKEM 689
T+ LI+ C G+ A L+++M
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKM 592
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 156/537 (29%), Positives = 290/537 (54%)
Query: 189 VEQCLLVFNKMLRNGLLPDVKNCNRIIKVL-RDNGFSVKAREVYRMMGEFGIKPSIVTYN 247
++ + +F M+++ P + ++++ + + N F + + M GI ++ TY+
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVI-SLGEQMQNLGISHNLYTYS 120
Query: 248 TMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKL 307
+++ FC+ ++ AL +L +M G P+ VT N L+ GF + A L+ M+++
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 308 GLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDA 367
G + + ++N +I G EA+ L + MV +G P L TY I++ GLCK G + A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 368 RHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDG 427
+M + + P ++ YNT++ C N+ +A LF E+ ++ + P VVTYN+LI
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300
Query: 428 LCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD 487
LC YG A +L +MI + I P+V+T++ +++ K G L A + ++EM+++ + PD
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360
Query: 488 RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLR 547
F Y++ I G EA + E M++K P+++TYN L+ G CK ++E EL R
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420
Query: 548 KMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG 607
+M G + + +TYT++IH + + + +F M+ G+ P ++TY++L+ G
Sbjct: 421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480
Query: 608 RLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYT 667
++E A + F +Q + P++ TYN +I G+C+ +++ + LF + +G+ PN TYT
Sbjct: 481 KVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 540
Query: 668 ILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHAVEYLESL 724
+++ C G +EA L++EM + PD T++ L+ L K + E + +
Sbjct: 541 TMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597
|
|
| TAIR|locus:2016427 AT1G19290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 184/615 (29%), Positives = 311/615 (50%)
Query: 88 SDPELLVRVLNRIREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVV 147
SD ELL +L R+R P L F Q + D +C ++ IL + + +
Sbjct: 69 SD-ELLNSILRRLRLNPEACLEIFNLASKQQKFRPDYKAYCKMVHILSRARNYQQTKSYL 127
Query: 148 ETVVCVNMHGIL--DVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL 205
+V +N G + L+ S + D++L +Y +K +V+ L VF+ M G +
Sbjct: 128 CELVALNHSGFVVWGELVRVFKEFSFSPTVFDMILKVYAEKGLVKNALHVFDNMGNYGRI 187
Query: 206 PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALEL 265
P + +CN ++ L G + A VY M F + P + T + +++++C+ G + +A+
Sbjct: 188 PSLLSCNSLLSNLVRKGENFVALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVF 247
Query: 266 LWEMQGR-GCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324
E + G N VTYN LI G++ G++E ++R M + G+ + +Y +I GY
Sbjct: 248 AKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYC 307
Query: 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDII 384
+KGL+ EA ++ E + + + Y +L+ G C+ G++ DA M+ V +
Sbjct: 308 KKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTT 367
Query: 385 SYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENM 444
N+L+ GYC+SG + EA +F + +L P TYNTL+DG CR G ++ A +L + M
Sbjct: 368 ICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQM 427
Query: 445 INQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDT 504
+ ++P V+TY I++ G ++G + ML++G+ D + +T + KLGD
Sbjct: 428 CQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDF 487
Query: 505 SEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSI 564
+EA +L E +LA+G D IT NV++ GLCK+ + EA E+L + P TY ++
Sbjct: 488 NEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQAL 547
Query: 565 IHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGI 624
H ++G+L+ + M RKG+ PT+ Y LI L E++ +G+
Sbjct: 548 SHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGL 607
Query: 625 RPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALR 684
P V TY ALI G C + ID+AY +M E+GI N + + N EA
Sbjct: 608 TPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACL 667
Query: 685 LYKEMLDREIE-PDY 698
L ++++D ++ P Y
Sbjct: 668 LLQKIVDFDLLLPGY 682
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 181/624 (29%), Positives = 308/624 (49%)
Query: 104 PRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVV--CVNMHGILDV 161
P+ AL F W+ P K + + ++L +LI +G + + + ++ C ++ L V
Sbjct: 103 PKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYV 162
Query: 162 L-IGGGLSSC----VSIKIL----DLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN 212
L + ++ + K++ + LL + +V++ V+ +ML + + P++ N
Sbjct: 163 LDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYN 222
Query: 213 RIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR 272
+++ G +A + + E G+ P TY +++ +C+ ++ A ++ EM +
Sbjct: 223 KMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLK 282
Query: 273 GCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPII---CGYSEKGLL 329
GC N V Y LI G +++A L M + +Y +I CG K
Sbjct: 283 GCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKS-- 340
Query: 330 VEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTL 389
EALNL +EM G+ P + TY +LI LC + AR +ML K ++P++I+YN L
Sbjct: 341 -EALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNAL 399
Query: 390 LYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGI 449
+ GYC+ G I +A + + + SR L P TYN LI G C+ ++ A + M+ + +
Sbjct: 400 INGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKV 458
Query: 450 LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYR 509
LPDV+TY +++G C+ GN A + M +GL PD++ YT+ I K EA
Sbjct: 459 LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACD 518
Query: 510 LQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASL 569
L + + KG P+++ Y L+ G CK G ++EA+ +L KM+ +P+ +T+ ++IH
Sbjct: 519 LFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLC 578
Query: 570 EMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI 629
G L+ L M++ GL PT+ T T+LIH G + A+ F +M G +P+
Sbjct: 579 ADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAH 638
Query: 630 TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEM 689
TY I CR R+ A + M E G+ P+ +TY+ LI + G A + K M
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698
Query: 690 LDREIEPDYCTHSALLLKQLDKDY 713
D EP T +L+ L+ Y
Sbjct: 699 RDTGCEPSQHTFLSLIKHLLEMKY 722
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 155/531 (29%), Positives = 283/531 (53%)
Query: 195 VFNKMLRNGLLPDVKNCNRIIKVL-RDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSF 253
+F +M+++ LP + N+++ + + N F + RM I + +YN +++ F
Sbjct: 67 LFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQN-LRISYDLYSYNILINCF 125
Query: 254 CKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSA 313
C+ ++ AL +L +M G P+ VT + L+ G+ + +A L+ M + + +
Sbjct: 126 CRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNT 185
Query: 314 HSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFE 373
++N +I G EA+ L + MV RG P L TY ++ GLCK G + A +
Sbjct: 186 VTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 245
Query: 374 MLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGD 433
M + + D++ Y T++ C N+ +A LF E+ ++ + P VVTYN+LI LC YG
Sbjct: 246 MEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR 305
Query: 434 LEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTT 493
A +L +MI + I P+V+T++ +++ K G L A + ++EM+++ + PD F Y++
Sbjct: 306 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 365
Query: 494 QIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDG 553
I G EA + E M++K P+++TYN L+ G CK +EE EL R+M G
Sbjct: 366 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 425
Query: 554 FIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAF 613
+ + +TY ++I + GD + +F M+ G+ P ++TY++L+ G+LE A
Sbjct: 426 LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL 485
Query: 614 MYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINEN 673
+ F +Q + P++ TYN +I G+C+ +++ + LF + +G+ PN YT +I+
Sbjct: 486 VVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGF 545
Query: 674 CNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHAVEYLESL 724
C G +EA L++EM + P+ T++ L+ +L K + E ++ +
Sbjct: 546 CRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM 596
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 192/629 (30%), Positives = 317/629 (50%)
Query: 78 WVSDHFQAVVSDPELLVRVLNRIREKP--RIALRFFRWVETQPGVKRDEFVFCTILEILI 135
+ S H A +S + V++L+ +R +P ALR F +P + ++ EIL+
Sbjct: 38 FASPH-SAALSSTD--VKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALY---EEILL 91
Query: 136 ESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLI--YTKKSMVEQCL 193
G RS + +M IL+ + S C + L+LI Y + + ++ L
Sbjct: 92 RLG--RSGSFD-------DMKKILEDMKS---SRC-EMGTSTFLILIESYAQFELQDEIL 138
Query: 194 LVFNKMLRN-GLLPDVKNCNRIIKVLRDNGFSVKAREV-YRMMGEFGIKPSIVTYNTMLD 251
V + M+ GL PD NR++ +L D G S+K E+ + M +GIKP + T+N ++
Sbjct: 139 SVVDWMIDEFGLKPDTHFYNRMLNLLVD-GNSLKLVEISHAKMSVWGIKPDVSTFNVLIK 197
Query: 252 SFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV 311
+ C+ +++ A+ +L +M G P+ T+ ++ G+ G+L+ A + M++ G
Sbjct: 198 ALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSW 257
Query: 312 SAHSYNPIICGYSEKGLLVEALNLEEEMVTR-GVAPTLATYNILIYGLCKWGRVSDARHR 370
S S N I+ G+ ++G + +ALN +EM + G P T+N L+ GLCK G V A
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317
Query: 371 FFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR 430
ML++ PD+ +YN+++ G C+ G + EA + D++ +R+ P VTYNTLI LC+
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCK 377
Query: 431 YGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFA 490
+E A +L + ++GILPDV T+ ++ G C N +A E F EM KG +PD F
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFT 437
Query: 491 YTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMV 550
Y I G EA + ++M G +ITYN L+ G CK EA E+ +M
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEME 497
Query: 551 GDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGR-L 609
G + +TY ++I + + L + M+ +G P TY L+ H RG +
Sbjct: 498 VHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLL-THFCRGGDI 556
Query: 610 ELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTIL 669
+ A M G P+++TY LI+GLC+ R++ A L ++ +GI + Y +
Sbjct: 557 KKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPV 616
Query: 670 INENCNAGNWQEALRLYKEMLDR-EIEPD 697
I EA+ L++EML++ E PD
Sbjct: 617 IQGLFRKRKTTEAINLFREMLEQNEAPPD 645
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 153/531 (28%), Positives = 284/531 (53%)
Query: 189 VEQCLLVFNKMLRNGLLPDVKNCNRIIKVL-RDNGFSVKAREVYRMMGEFGIKPSIVTYN 247
++ + +F +M+++ P + ++++ + + N F V + M GI + TY+
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVI-SLGEQMQNLGIPHNHYTYS 120
Query: 248 TMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKL 307
+++ FC+ ++ AL +L +M G PN VT + L+ G+ + + +A L+ M
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 308 GLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDA 367
G + + ++N +I G EA+ L + MV +G P L TY +++ GLCK G A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 368 RHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDG 427
+ +M + + P ++ YNT++ G C+ ++ +A LF E+ ++ + P VVTY++LI
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 428 LCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD 487
LC YG A +L +MI + I PDV T++ +++ K G L A + ++EM+++ + P
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
Query: 488 RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLR 547
Y++ I G EA ++ E M++K PD++TYN L+ G CK +EE E+ R
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 420
Query: 548 KMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG 607
+M G + + +TY +I + GD +++F M+ G+ P ++TY L+ G
Sbjct: 421 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480
Query: 608 RLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYT 667
+LE A + F +Q + P + TYN +I G+C+ +++ + LF ++ +G+ P+ Y
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 540
Query: 668 ILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQL-DKDYKVHA 717
+I+ C G+ +EA L+KEM + P+ ++ L+ +L D D + A
Sbjct: 541 TMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0C7Q9 | PPR56_ARATH | No assigned EC number | 0.4890 | 0.9753 | 0.9902 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 729 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-37 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-35 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-30 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-26 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-26 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 5e-37
Identities = 91/403 (22%), Positives = 185/403 (45%), Gaps = 39/403 (9%)
Query: 327 GLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGR-VSDARHRFFEMLRKNVIPDIIS 385
G + + ++L E+M RG+ Y+ + CK R V +A RF +++R P + +
Sbjct: 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEA-FRFAKLIRN---PTLST 439
Query: 386 YNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMI 445
+N L+ S +I A + ++ L Y TLI + G ++ ++ M+
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 446 NQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTS 505
N G+ +V T+ +++G + G ++ A + M K ++PDR + I+ + G
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 506 EAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSII 565
A+ + EM A+ P D PDHIT +++
Sbjct: 560 RAFDVLAEMKAETHPID---------------------------------PDHITVGALM 586
Query: 566 HASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIR 625
A G + R ++++ + + T YT+ +++ + +G + A + +M+ KG++
Sbjct: 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646
Query: 626 PNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRL 685
P+ + ++AL++ +D+A+ + D ++GI +Y+ L+ NA NW++AL L
Sbjct: 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706
Query: 686 YKEMLDREIEPDYCTHSALLLKQLDKDYKVHAVEYLESL-TLG 727
Y+++ ++ P T +AL+ + + A+E L + LG
Sbjct: 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 2e-35
Identities = 111/465 (23%), Positives = 197/465 (42%), Gaps = 87/465 (18%)
Query: 239 IKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRG---------------C--------- 274
I YN +L ++G +++ ++LL +M+ RG C
Sbjct: 370 SPEYIDAYNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEA 425
Query: 275 --------SPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPII--CGYS 324
+P T+N+L++ + + +++ A ++R + + GLK Y +I C S
Sbjct: 426 FRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485
Query: 325 EKGLLVEAL-NLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDI 383
K V+A+ + EMV GV + T+ LI G + G+V+ A + M KNV PD
Sbjct: 486 GK---VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 384 ISYNTLLYGYCRSGNIGEAFLLFDELRSRN--LVPTVVTYNTLIDGLCRYGDLEVAQQLK 441
+ +N L+ +SG + AF + E+++ + P +T L+ G ++ A+++
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 442 ENMINQGI--LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR--FAYTTQIAG 497
+ + I P+V YTI VN + G+ A +++M +KG++PD F+ +AG
Sbjct: 603 QMIHEYNIKGTPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660
Query: 498 ELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPD 557
D +A+ + ++ +G ++Y+ L+ + ++A EL
Sbjct: 661 HAGDLD--KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED--------- 709
Query: 558 HITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFS 617
I + L PT+ T LI A +L A S
Sbjct: 710 -------IKSI-------------------KLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 618 EMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN 662
EM+ G+ PN ITY+ L+ R D L +E+GI PN
Sbjct: 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 4e-32
Identities = 106/456 (23%), Positives = 185/456 (40%), Gaps = 81/456 (17%)
Query: 196 FNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK 255
F K++RN P + N ++ V + A V R++ E G+K Y T++ + K
Sbjct: 428 FAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK 484
Query: 256 EGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHS 315
G++ E+ EM G N T+ LI G +R G++ +A G +
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG---------------A 529
Query: 316 YNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEML 375
Y G+ M ++ V P +N LI + G V A EM
Sbjct: 530 Y----------GI----------MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569
Query: 376 --RKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGD 433
+ PD I+ L+ +G + A
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRA------------------------------- 598
Query: 434 LEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR--FAY 491
EV Q + E I +G P+V T I VN + G+ A +++M +KG++PD F+
Sbjct: 599 KEVYQMIHEYNI-KGT-PEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 492 TTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVG 551
+AG D +A+ + ++ +G ++Y+ L+ + ++A EL +
Sbjct: 655 LVDVAGHAGDLD--KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 552 DGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLEL 611
P T ++I A E L + ++ + M R GL P +TY++L+ A + ++
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 612 AFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQA 647
S+ + GI+PN++ + GLC LRR ++A
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCIT-GLC-LRRFEKA 806
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 5e-30
Identities = 133/539 (24%), Positives = 236/539 (43%), Gaps = 52/539 (9%)
Query: 183 YTKKSMVEQCLLVFNKMLRNGLLPDVKN--CNRIIKVLRDNGFS---VKAREVYRMMGEF 237
Y K ++ L ++++ML G+ PDV C VLR G + REV+ + F
Sbjct: 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPC-----VLRTCGGIPDLARGREVHAHVVRF 216
Query: 238 GIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQA 297
G + + N ++ + K G++ A + M R C +++N +I+G+ NGE +
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEG 272
Query: 298 RGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEM----VTRGVAPTLATYNI 353
L M +L + + +I S LL + L EM V G A ++ N
Sbjct: 273 LELFFTMRELSVDPDLMTITSVI---SACELLGD-ERLGREMHGYVVKTGFAVDVSVCNS 328
Query: 354 LIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRN 413
LI G +A F M K D +S+ ++ GY ++G +A + + N
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDN 384
Query: 414 LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAR 473
+ P +T +++ GDL+V +L E +G++ V+ ++ K + A
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444
Query: 474 EFFNEMLRKGLQPDRFAYTTQIAGELKLGDTS-EAYRLQEEMLAKGFPPDLITYNVLVHG 532
E F+ + K D ++T+ IAG L+L + EA +ML P+ +T +
Sbjct: 445 EVFHNIPEK----DVISWTSIIAG-LRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSA 498
Query: 533 LCKLGSLEEANEL----LRKMVG-DGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK 587
++G+L E+ LR +G DGF+P+ +++ + G + + FN+ +
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNYAWNQFNSHEKD 553
Query: 588 GLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQA 647
+V++ +L+ + A G+ +A F+ M G+ P+ +T+ +L+ R + Q
Sbjct: 554 -----VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608
Query: 648 YGLFIDMEEE-GILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALL 705
F MEE+ I PN Y +++ AG EA +M I PD ALL
Sbjct: 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALL 664
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-26
Identities = 88/355 (24%), Positives = 157/355 (44%), Gaps = 14/355 (3%)
Query: 312 SAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRF 371
S H N + G L +AL L E M V Y + ++ LC+W R + R
Sbjct: 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAY-VALFRLCEWKRAVEEGSRV 108
Query: 372 FEMLRKNVIPDIISY-NTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR 430
+ + N +L + R G + A+ +F ++ R+L ++N L+ G +
Sbjct: 109 CSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLF----SWNVLVGGYAK 164
Query: 431 YGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFA 490
G + A L M+ G+ PDV T+ ++ + +L+ RE ++R G + D
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224
Query: 491 YTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMV 550
I +K GD A + + M + D I++N ++ G + G E EL M
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMR 280
Query: 551 GDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLE 610
PD +T TS+I A +GD R GR++ +++ G + + LI + + G
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 611 LAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYT 665
A FS M+ K + +++ A+I+G + D+A + ME++ + P++ T
Sbjct: 341 EAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 7e-26
Identities = 107/465 (23%), Positives = 181/465 (38%), Gaps = 68/465 (14%)
Query: 227 AREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLIT 286
+ VY + G +P N +L K G + +A L EM R N ++ +I
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIG 197
Query: 287 GFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP 346
G G +A L R+M + G ++ ++ + G L ++ GV
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257
Query: 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLF 406
LI K G + DAR F M K + ++N++L GY G EA L+
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLY 313
Query: 407 DELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKM 466
E+R + T++ +I R LE A+Q +I G D++ T +V+ K
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373
Query: 467 GNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITY 526
G + AR F+ M RK +LI++
Sbjct: 374 GRMEDARNVFDRMPRK---------------------------------------NLISW 394
Query: 527 NVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLR 586
N L+ G G +A E+ +M+ +G P+H+T+ +++ A G +G ++F +M
Sbjct: 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
Query: 587 -KGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRR-- 643
+ P + Y +I G L+ A+ K P V + AL+ CR+ +
Sbjct: 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK---PTVNMWAALLTA-CRIHKNL 510
Query: 644 ------IDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEA 682
++ YG M E + Y +L+N ++G EA
Sbjct: 511 ELGRLAAEKLYG----MGPEKL----NNYVVLLNLYNSSGRQAEA 547
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 8e-25
Identities = 117/481 (24%), Positives = 198/481 (41%), Gaps = 62/481 (12%)
Query: 247 NTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTY------------------------- 281
N+ L + C G++++AL+LL MQ + Y
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 282 ----------NVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVE 331
N +++ F R GEL A + M + L S+N ++ GY++ G E
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAKAGYFDE 170
Query: 332 ALNLEEEMVTRGVAPTLATYNILIY---GLCKWGRVSDARHRFFEMLRKNVIPDIISYNT 388
AL L M+ GV P + T+ ++ G+ R R ++R D+ N
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR---GREVHAHVVRFGFELDVDVVNA 227
Query: 389 LLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQG 448
L+ Y + G++ A L+FD + R+ +++N +I G G+ +L M
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRD----CISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 449 ILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAY 508
+ PD++T T +++ +G+ + RE +++ G D + I L LG EA
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 509 RLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHAS 568
++ M K D +++ ++ G K G ++A E M D PD IT S++ A
Sbjct: 344 KVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 569 LEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV 628
+GDL G L RKGL +V LI ++ ++ A F + K +V
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DV 455
Query: 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688
I++ ++I GL R +A F M + PN T ++ G AL KE
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIG----ALMCGKE 510
Query: 689 M 689
+
Sbjct: 511 I 511
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 5e-24
Identities = 99/400 (24%), Positives = 173/400 (43%), Gaps = 21/400 (5%)
Query: 320 ICGYSEK----GLLVEALNLEEEMVTRGVAPTL--ATYNILIYGLCKWGRVSDARHRFFE 373
+C EK G EAL L E + TL +TY+ L+ + + ++
Sbjct: 90 LCSQIEKLVACGRHREALELFEILEAGC-PFTLPASTYDALVEACIALKSIRCVKAVYWH 148
Query: 374 MLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGD 433
+ PD N +L + + G + +A LFDE+ RNL ++ T+I GL G+
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGN 204
Query: 434 LEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTT 493
A L M G + T+ +M+ S +G+ ++ +L+ G+ D F
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 494 QIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDG 553
I K GD +A + + M K + +N ++ G G EEA L +M G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 554 FIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAF 613
D T++ +I + L + ++R G +V T L+ ++ GR+E A
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 614 MYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINEN 673
F M K N+I++NALI G R +A +F M EG+ PN T+ +++
Sbjct: 381 NVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
Query: 674 CNAGNWQEALRLYKEML-DREIEPDYCTHSALLLKQLDKD 712
+G ++ +++ M + I+P H A +++ L ++
Sbjct: 437 RYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIELLGRE 475
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-22
Identities = 111/494 (22%), Positives = 205/494 (41%), Gaps = 57/494 (11%)
Query: 247 NTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLK 306
N ML F + GE+ A W + G+ + ++NVL+ G+++ G ++A L ML
Sbjct: 125 NAMLSMFVRFGELVHA----WYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 307 LGLKVSAHSYNPII--CGYSEKGL--LVEALNLEEEMVTRGVAPTLATYNILIYGLCKWG 362
G++ +++ ++ CG G+ L + +V G + N LI K G
Sbjct: 181 AGVRPDVYTFPCVLRTCG----GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236
Query: 363 RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYN 422
V AR F M R+ D IS+N ++ GY +G E LF +R ++ P ++T
Sbjct: 237 DVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292
Query: 423 TLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482
++I GD + +++ ++ G DV ++ +G+ A + F+ M K
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352
Query: 483 GLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEA 542
D ++T I+G K G +A M PD IT ++ LG L+
Sbjct: 353 ----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408
Query: 543 NELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHA 602
+L G I + ++I + + + ++F+N+ K ++++T +I
Sbjct: 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAG 464
Query: 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRL------RRIDQAYGLFIDMEE 656
R A ++F +M + ++PN +T A ++ R+ + I A+ L +
Sbjct: 465 LRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEI-HAHVLRTGIGF 522
Query: 657 EGILPNKY-------------------------TYTILINENCNAGNWQEALRLYKEMLD 691
+G LPN ++ IL+ G A+ L+ M++
Sbjct: 523 DGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582
Query: 692 REIEPDYCTHSALL 705
+ PD T +LL
Sbjct: 583 SGVNPDEVTFISLL 596
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 3e-18
Identities = 90/330 (27%), Positives = 139/330 (42%), Gaps = 66/330 (20%)
Query: 227 AREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLIT 286
AR V+ M E + V +N+ML + G +EAL L +EM+ G S + T++++I
Sbjct: 278 ARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 287 GFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP 346
FSR LE A+ AH+ GL+ L+ VA
Sbjct: 334 IFSRLALLEHAK-------------QAHA-----------GLIRTGFPLDI------VAN 363
Query: 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLF 406
T L+ KWGR+ DAR+ F M RKN +IS+N L+ GY G +A +F
Sbjct: 364 T-----ALVDLYSKWGRMEDARNVFDRMPRKN----LISWNALIAGYGNHGRGTKAVEMF 414
Query: 407 DELRSRNLVPTVVTYNTLIDGLCRYGDL-----EVAQQLKENMINQGILPDVITYTIMVN 461
+ + + + P VT+ ++ CRY L E+ Q + E N I P + Y M+
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSA-CRYSGLSEQGWEIFQSMSE---NHRIKPRAMHYACMIE 470
Query: 462 GSCKMGNLSMAREFFNEMLRKGLQPDRFAY-----TTQIAGELKLGDTSEAYRLQEEMLA 516
+ G L A R +P + +I L+LG + E++
Sbjct: 471 LLGREGLLDEAYAMIR---RAPFKPTVNMWAALLTACRIHKNLELGRLA-----AEKLYG 522
Query: 517 KGFPPDLITYNVLVHGLCKLGSLEEANELL 546
G P L Y VL++ G EA +++
Sbjct: 523 MG-PEKLNNYVVLLNLYNSSGRQAEAAKVV 551
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 3e-18
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 626 PNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCN 675
P+V+TYN LI+G C+ ++++A LF +M++ GI PN YTY+ILI+ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.8 bits (193), Expect = 5e-18
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 381 PDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR 430
PD+++YNTL+ GYC+ G + EA LF+E++ R + P V TY+ LIDGLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.8 bits (193), Expect = 5e-18
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 241 PSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSR 290
P +VTYNT++D +CK+G+++EAL+L EM+ RG PN TY++LI G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 7e-17
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 416 PTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCK 465
P VVTYNTLIDG C+ G +E A +L M +GI P+V TY+I+++G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 9e-17
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 591 PTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCR 640
P +VTY LI + +G++E A F+EM+ +GI+PNV TY+ LI+GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 9e-13
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 521 PDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHA 567
PD++TYN L+ G CK G +EEA +L +M G P+ TY+ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 346 PTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCR 395
P + TYN LI G CK G+V +A F EM ++ + P++ +Y+ L+ G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 451 PDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAG 497
PDV+TY +++G CK G + A + FNEM ++G++P+ + Y+ I G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 4e-12
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 315 SYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK 360
+YN +I GY +KG + EAL L EM RG+ P + TY+ILI GLCK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 79/370 (21%), Positives = 149/370 (40%), Gaps = 68/370 (18%)
Query: 119 GVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDL 178
GV D FV C ++++ + G + A V +
Sbjct: 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFD------------------------------ 283
Query: 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG 238
M E+ + +N ML L +G+S +A +Y M + G
Sbjct: 284 --------GMPEKTTVAWNSMLAGYAL---------------HGYSEEALCLYYEMRDSG 320
Query: 239 IKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQAR 298
+ T++ M+ F + ++ A + + G + V L+ +S+ G +E AR
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 299 GLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGL 358
+ M + L S+N +I GY G +A+ + E M+ GVAP T+ + +
Sbjct: 381 NVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF-LAVLSA 435
Query: 359 CKWGRVSDARHRFFEMLRKN--VIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVP 416
C++ +S+ F+ + +N + P + Y ++ R G + EA+ + +R P
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFKP 492
Query: 417 TVVTYNTLIDGLCR-YGDLEVAQQLKENMINQGILPDVI-TYTIMVNGSCKMGNLSMARE 474
TV + L+ CR + +LE+ + E + G P+ + Y +++N G + A +
Sbjct: 493 TVNMWAALLTA-CRIHKNLELGRLAAEKLYGMG--PEKLNNYVVLLNLYNSSGRQAEAAK 549
Query: 475 FFNEMLRKGL 484
+ RKGL
Sbjct: 550 VVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-11
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 556 PDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHA 604
PD +TY ++I + G + LFN M ++G+ P + TY++LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.4 bits (135), Expect = 2e-10
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 622 KGIRPNVITYNALINGLCRLRRIDQAYGLFIDME 655
KG++P+V+TYN LI+GLCR R+D+A L +ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 5e-10
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 517 KGFPPDLITYNVLVHGLCKLGSLEEANELLRKMV 550
KG PD++TYN L+ GLC+ G ++EA ELL +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 1e-09
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 661 PNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALL 705
P+ TY LI+ C G +EAL+L+ EM R I+P+ T+S L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 206 PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK 255
PDV N +I G +A +++ M + GIKP++ TY+ ++D CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 2e-09
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 237 FGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQ 270
G+KP +VTYNT++D C+ G + EA+ELL EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 4e-09
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 412 RNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENM 444
+ L P VVTYNTLIDGLCR G ++ A +L + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 4e-09
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 447 QGILPDVITYTIMVNGSCKMGNLSMAREFFNEM 479
+G+ PDV+TY +++G C+ G + A E +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 8e-08
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 377 KNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELR 410
K + PD+++YNTL+ G CR+G + EA L DE+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 244 VTYNTMLDSFCKEGEMQEALELLWEMQGRGC 274
VTYN+++ +CK G+++EALEL EM+ +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 27/241 (11%)
Query: 190 EQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249
++ L ++ + L P V N +I L + KA EV M G+ P+ +TY+ +
Sbjct: 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760
Query: 250 LDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGL 309
L + ++ + L+LL + + G PN V ITG L + LG
Sbjct: 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC-ITGLC----LRR----FEKACALGE 811
Query: 310 KV-SAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDAR 368
V S S P I E AL + E ++ G PT+ + ++ G + + R
Sbjct: 812 PVVSFDSGRPQI----ENKWTSWALMVYRETISAGTLPTMEVLSQVL-GCLQLPHDATLR 866
Query: 369 HRFFEMLRKNV-IPDIISYNTLLYGYCRSGNIGE----AFLLFDELRSRNLVPTVVTYNT 423
+R E L + + +TL+ G+ GE AF L +E S +VP+ V++
Sbjct: 867 NRLIENLGISADSQKQSNLSTLVDGF------GEYDPRAFSLLEEAASLGVVPS-VSFKK 919
Query: 424 L 424
Sbjct: 920 S 920
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 272 RGCSPNGVTYNVLITGFSRNGELEQARGLIRDM 304
+G P+ VTYN LI G R G +++A L+ +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 7e-07
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 244 VTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPN 277
VTYNT++D CK G ++EALEL EM+ RG P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 1e-06
Identities = 65/280 (23%), Positives = 106/280 (37%), Gaps = 47/280 (16%)
Query: 119 GVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDL 178
GV D+F F ++ I LL A H L + G L + ++DL
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAK---------QAHAGL-IRTGFPLDIVANTALVDL 369
Query: 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG 238
Y+K +E VF++M R L+ + N +I ++G KA E++ M G
Sbjct: 370 ----YSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 239 IKPSIVTYNTMLDSFCKEGEMQEALELLWEM-QGRGCSPNGVTYNVLITGFSRNGELEQA 297
+ P+ VT+ +L + G ++ E+ M + P + Y +I R G L++A
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 298 RGLIRDM---------------------LKLGLKVSAHSYNPIICGYSEKGLLVEALNLE 336
+IR L+LG +++A + G + V LNL
Sbjct: 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELG-RLAAEKLYGM--GPEKLNNYVVLLNLY 538
Query: 337 EEM----VTRGVAPTLATYNILIYGLCKWGRVSDARHRFF 372
V TL + ++ C W V H FF
Sbjct: 539 NSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFF 578
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN 662
+TYN LI+GLC+ R+++A LF +M+E GI P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 350 TYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDI 383
TYN LI GLCK GRV +A F EM + + PD+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 384 ISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV 418
++YNTL+ G C++G + EA LF E++ R + P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 454 ITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD 487
+TY +++G CK G + A E F EM +G++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPD 557
+TYN L+ GLCK G +EEA EL ++M G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 7e-06
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 342 RGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRK 377
+G+ P + TYN LI GLC+ GRV +A E+L +
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEA----VELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 9e-06
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 658 GILPNKYTYTILINENCNAGNWQEALRLYKEM 689
G+ P+ TY LI+ C AG EA+ L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-06
Identities = 13/31 (41%), Positives = 25/31 (80%)
Query: 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGI 659
+TYN+LI+G C+ ++++A LF +M+E+G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 454 ITYTIMVNGSCKMGNLSMAREFFNEMLRKGL 484
+TY +++G CK G L A E F EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 594 VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV 628
VTY LI GR+E A F EM+ +GI P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGF 554
+TYN L+ G CK G LEEA EL ++M G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 419 VTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDV 453
VTYNTLIDGLC+ G +E A +L + M +GI PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 3e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP 626
L TY L+ A A G +LA EM+ G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 279 VTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSA 313
VTYN LI G + G +E+A L ++M + G++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 5e-05
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 453 VITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQP 486
+ TY ++ K G+ +A EM GL+P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 279 VTYNVLITGFSRNGELEQARGLIRDMLKLGL 309
VTYN LI+G+ + G+LE+A L ++M + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 664 YTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697
TY LI+ C AG +EAL L+KEM +R IEPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 8e-05
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 384 ISYNTLLYGYCRSGNIGEAFLLFDELRSRNL 414
++YN+L+ GYC++G + EA LF E++ + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 1e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 587 KGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQ 620
KGL P +VTY LI GR++ A EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 594 VTYTVLIHAHAARGRLELAFMYFSEMQVKGI 624
VTY LI + G+LE A F EM+ KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 664 YTYTILINENCNAGNWQEALRLYKEMLDREI 694
TY LI+ C AG +EAL L+KEM ++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (99), Expect = 4e-04
Identities = 61/261 (23%), Positives = 95/261 (36%), Gaps = 5/261 (1%)
Query: 466 MGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLI- 524
+ +L +A E L K L +A LG+ +EA L EE L DL
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 525 TYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHI-TYTSIIHASLEMGDLRRGRDLFNN 583
+L L KLG LEEA ELL K + +P+ ++ +G +L
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 584 MLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV--KGIRPNVITYNALINGLCRL 641
L P L + + A G E A + + + AL L L
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 642 RRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTH 701
R ++A L + + L G ++EAL Y++ L+ + + +
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALY 240
Query: 702 SALLLKQLDKDYKVHAVEYLE 722
+ LL Y+ A+E LE
Sbjct: 241 NLALLLLELGRYE-EALEALE 260
|
Length = 291 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 419 VTYNTLIDGLCRYGDLEVAQQLKENMINQGI 449
VTYN+LI G C+ G LE A +L + M +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 5e-04
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 383 IISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVP 416
+ +YN LL ++G+ A + +E+++ L P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 6e-04
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 348 LATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP 381
L TYN L+ L K G A EM + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 8e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 664 YTYTILINENCNAGNWQEALRLYKEMLDREIEP 696
TY L+ AG+ AL + +EM ++P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 628 VITYNALINGLCRLRRIDQAYGLFIDMEEEGILP 661
+ TYNAL+ L + D A + +M+ G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 350 TYNILIYGLCKWGRVSDARHRFFEMLRKNV 379
TYN LI G CK G++ +A F EM K V
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 279 VTYNVLITGFSRNGELEQARGLIRDMLKLGLK 310
TYN L+ ++ G+ + A ++ +M GLK
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 559 ITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT 592
+TY ++I + G + +LF M +G+ P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.004
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 418 VVTYNTLIDGLCRYGDLEVAQQLKENMINQGILP 451
+ TYN L+ L + GD ++A + E M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.78 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.6 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.51 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.51 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.48 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.41 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.35 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.34 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.27 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.26 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.25 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.25 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.23 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.18 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.16 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.14 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.13 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.13 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.03 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.02 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.94 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.9 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.84 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.83 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.75 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.61 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.61 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.6 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.58 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.5 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.46 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.45 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.43 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.39 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.36 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.34 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.29 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.18 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.09 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.04 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.95 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.95 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.92 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.88 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.87 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.87 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.83 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.81 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.77 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.74 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.71 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.71 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.7 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.66 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.63 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.62 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.62 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.6 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.6 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.58 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.56 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.55 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.54 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.54 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.52 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.51 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.51 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.51 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.5 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.49 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.47 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.46 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.46 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.46 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.44 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.44 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.42 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.41 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.41 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.39 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.38 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.34 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.31 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.31 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.27 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.23 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.23 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.21 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.19 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.14 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.13 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.1 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.94 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.94 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.93 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.9 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.89 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.82 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.79 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.75 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.73 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.66 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.65 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.61 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.57 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.51 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.44 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.32 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.23 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.21 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.17 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.13 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.1 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.07 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.03 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.96 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.95 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.93 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.88 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.87 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.74 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.71 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.7 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.7 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.58 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.57 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.47 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.46 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.45 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.45 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.36 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.35 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.31 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.2 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.17 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.09 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.08 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.04 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.96 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.81 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.79 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.77 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.68 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.66 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.63 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.61 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.54 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.4 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.34 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.34 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.27 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.99 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.8 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.24 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.11 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.1 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.1 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.96 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.73 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.72 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.32 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.13 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.02 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.98 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.88 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.67 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.63 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.61 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.6 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.29 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.24 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.1 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.05 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.83 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.83 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.8 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.75 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.74 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.64 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.35 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.16 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.04 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.97 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.73 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.53 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.27 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.0 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.38 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.26 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.09 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.01 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.9 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.38 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.27 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.12 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.81 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.52 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.19 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.14 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 85.01 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.78 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.42 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.29 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.09 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.78 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.58 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.33 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.09 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 83.03 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 82.33 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.22 | |
| PF10155 | 126 | DUF2363: Uncharacterized conserved protein (DUF236 | 81.85 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 81.57 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.3 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.26 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 81.19 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 80.44 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.37 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.21 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-76 Score=675.08 Aligned_cols=592 Identities=20% Similarity=0.292 Sum_probs=471.8
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchh---hhHHHhhcCC-----------
Q 004814 102 EKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHG---ILDVLIGGGL----------- 167 (729)
Q Consensus 102 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~---~~~~l~~~~~----------- 167 (729)
+++..|+.+|+.+.. .|++|+..+|..++..+.+.+.++.|..++..+++.++.. +.+.++..+.
T Consensus 65 g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~ 143 (857)
T PLN03077 65 GQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYV 143 (857)
T ss_pred CCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHH
Confidence 345555555555542 3445555555555555555555555555555444433210 0111111000
Q ss_pred ---CCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChh
Q 004814 168 ---SSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIV 244 (729)
Q Consensus 168 ---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ 244 (729)
-...+...|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.++.+.+++..+.+++..|.+.|+.||..
T Consensus 144 f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (857)
T PLN03077 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223 (857)
T ss_pred HhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc
Confidence 00123457888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 324 (729)
+||.|+.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+++
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Confidence 888888888888888888888888864 5788888888888888888888888888888888888888888888888
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 004814 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFL 404 (729)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 404 (729)
+.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|++
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHH
Confidence 8888888888888888888888888888888888888888888888888865 788888888888888888888888
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 405 LFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGL 484 (729)
Q Consensus 405 l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 484 (729)
+|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 452 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--- 452 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888764
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004814 485 QPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSI 564 (729)
Q Consensus 485 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 564 (729)
+|..+|+.++.+|++.|+.++|+.+|++|.. +++||..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..+++++
T Consensus 453 -~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 453 -KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred -CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 4777888888888888888888888888875 47888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 565 IHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRI 644 (729)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 644 (729)
+++|++.|++++|.++|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 88888888888888888776 4788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc
Q 004814 645 DQAYGLFIDME-EEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH 716 (729)
Q Consensus 645 ~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~ 716 (729)
++|.++|++|. +.|+.|+..+|+.++++|+++|++++|.+++++| +++||..+|.++ +..+...|+.+
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aL-l~ac~~~~~~e 674 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGAL-LNACRIHRHVE 674 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHH-HHHHHHcCChH
Confidence 88888888888 5788888888888888888888888888888888 578888888888 55566666665
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-75 Score=668.48 Aligned_cols=583 Identities=21% Similarity=0.286 Sum_probs=549.9
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHH
Q 004814 102 EKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLL 181 (729)
Q Consensus 102 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 181 (729)
++.+.|+.+|+.+. ++|..+|+.++.+|++.|++++|..+|++|...+.. ++..+|..+++
T Consensus 135 g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~--------------Pd~~t~~~ll~ 195 (857)
T PLN03077 135 GELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR--------------PDVYTFPCVLR 195 (857)
T ss_pred CChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------------CChhHHHHHHH
Confidence 56777777777764 257778888888888888888888888877654322 36788999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004814 182 IYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQE 261 (729)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (729)
++++.++++.+.+++..+.+.|+.||+.++|.++.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLE 271 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999997 4789999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004814 262 ALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVT 341 (729)
Q Consensus 262 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (729)
|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|..
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 351 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhH
Q 004814 342 RGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTY 421 (729)
Q Consensus 342 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~ 421 (729)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|
T Consensus 352 ----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 352 ----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred ----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 004814 422 NTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKL 501 (729)
Q Consensus 422 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 501 (729)
+.|+++|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|+++|++|.. ++.||..+|..++.+|++.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI 502 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh
Confidence 999999999999999999999996 46888999999999999999999999999986 5899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 502 GDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLF 581 (729)
Q Consensus 502 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (729)
|+.+.+.+++..+.+.|+.+|..++++++++|++.|++++|.++|+.+ .||..+|++++.+|++.|+.++|.++|
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 579999999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004814 582 NNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQ-VKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL 660 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 660 (729)
++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~ 654 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---IT 654 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CC
Confidence 999999999999999999999999999999999999999 67999999999999999999999999999999984 78
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc-HHHHHHHhhc
Q 004814 661 PNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH-AVEYLESLTL 726 (729)
Q Consensus 661 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~-a~~~l~~l~~ 726 (729)
||..+|.+|+.+|...|+.+.|....++++ ++.|+...++.++...|.+.|+++ |.++.+.|..
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~--~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIF--ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHH--hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999 789988888888899999999999 7777777653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-71 Score=618.88 Aligned_cols=523 Identities=20% Similarity=0.310 Sum_probs=499.0
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 171 VSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL-PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 171 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
.+...|..+...|++.|++++|+++|++|.+.|+. ++...++.++..|.+.|..++|..+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 45667888889999999999999999999999864 5777788899999999999999999999974 899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCH
Q 004814 250 LDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLL 329 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 329 (729)
+.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 004814 330 VEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLR--KNVIPDIISYNTLLYGYCRSGNIGEAFLLFD 407 (729)
Q Consensus 330 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 407 (729)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 5788999999999999999999999999999
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 408 ELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD 487 (729)
Q Consensus 408 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 487 (729)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004814 488 RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHA 567 (729)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 567 (729)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHHCCC
Q 004814 568 SLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAA----R-------------------GRLELAFMYFSEMQVKGI 624 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~g~ 624 (729)
|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|.+.|+
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999876432 1 124689999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 625 RPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 625 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
.||..||+.++.++++.+..+.+..++++|...+..|+..+|+++++++++. .++|..++++|...|+.|+..
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999999999999998888899999999999998432 478999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-70 Score=610.82 Aligned_cols=538 Identities=18% Similarity=0.269 Sum_probs=503.2
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHH
Q 004814 105 RIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYT 184 (729)
Q Consensus 105 ~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 184 (729)
..++...++.... .++...|..++..|.+.|++++|..+|++|...+.. .++...+..++..|.
T Consensus 354 ~~~~~~~~~~~~~---~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv-------------~~~~v~~~~li~~~~ 417 (1060)
T PLN03218 354 ENSLAAYNGGVSG---KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLL-------------DMDKIYHAKFFKACK 417 (1060)
T ss_pred hhhHHHhccccCC---CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCC-------------CchHHHHHHHHHHHH
Confidence 4556666666432 467888899999999999999999999999876532 124556778899999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004814 185 KKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALE 264 (729)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 264 (729)
+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+
T Consensus 418 ~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 418 KQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred HCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 99999999999999875 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHH--C
Q 004814 265 LLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVT--R 342 (729)
Q Consensus 265 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~ 342 (729)
+|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYN 422 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~ 422 (729)
|+.||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 004814 423 TLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLG 502 (729)
Q Consensus 423 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 502 (729)
.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------
Q 004814 503 DTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLE----M------- 571 (729)
Q Consensus 503 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~------- 571 (729)
++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999876432 1
Q ss_pred ------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 572 ------------GDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLC 639 (729)
Q Consensus 572 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 639 (729)
+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|++++++++
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 22467999999999999999999999999999899999999999999998888999999999999985
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH
Q 004814 640 RLRRIDQAYGLFIDMEEEGILPNKY 664 (729)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (729)
+. .++|..++++|.+.|+.|+..
T Consensus 894 ~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 894 EY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cC--hHHHHHHHHHHHHcCCCCCcc
Confidence 43 468999999999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-63 Score=554.34 Aligned_cols=508 Identities=21% Similarity=0.260 Sum_probs=470.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNG-LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSF 253 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (729)
.|+.++..|.+.|++++|+++|+.|...+ +.||..+|+.++.++.+.++++.|.+++..|.+.|+.||..+||.|+++|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 56778999999999999999999999865 67999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHH
Q 004814 254 CKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEAL 333 (729)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 333 (729)
++.|++++|.++|++|.+ ||.++||+++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.
T Consensus 169 ~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 999999999999999964 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 004814 334 NLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRN 413 (729)
Q Consensus 334 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 413 (729)
+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+||.+|.+|++.|+.++|+++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999976 799999999999999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 004814 414 LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTT 493 (729)
Q Consensus 414 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 493 (729)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++|.+ ||..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999964 69999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC
Q 004814 494 QIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVG-DGFIPDHITYTSIIHASLEMG 572 (729)
Q Consensus 494 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g 572 (729)
+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986 589999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 573 DLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP-NVITYNALINGLCRLRRIDQAYGLF 651 (729)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 651 (729)
++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+. .| +..+|..++.+|++.|++++|.+++
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 999999998765 46899999999999999999999999999999764 45 4679999999999999999999999
Q ss_pred HHHHHcCCCCCHH-HHHHHH-------HHH----HhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 652 IDMEEEGILPNKY-TYTILI-------NEN----CNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 652 ~~m~~~g~~p~~~-~~~~l~-------~~~----~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
++|.+.|+...+. +|..+. ..- ....-++...++.++|.+.|..||..
T Consensus 552 ~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 552 ETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999864432 332111 000 00112455667888888899999853
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=549.39 Aligned_cols=476 Identities=21% Similarity=0.323 Sum_probs=455.3
Q ss_pred CCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 205 LPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG-IKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNV 283 (729)
Q Consensus 205 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 283 (729)
..+..+|+.++..|.+.|++++|.++|+.|...+ +.||..+|+.++.++++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3467789999999999999999999999998764 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 284 LITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGR 363 (729)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 363 (729)
++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999996 479999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 364 VSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKEN 443 (729)
Q Consensus 364 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 443 (729)
.+.+.+++..+.+.|..||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999965 5899999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 444 MINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL 523 (729)
Q Consensus 444 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 523 (729)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864 689
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHH
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLR-KGLSPTLVTYTVLIHA 602 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~ 602 (729)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 5899999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEA 682 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 682 (729)
|++.|++++|.+++++| ++.|+..+|++++.+|+..|+++.|..+++++.+.+ +.+..+|..+++.|++.|+|++|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHH
Confidence 99999999999999876 578999999999999999999999999999997643 33567999999999999999999
Q ss_pred HHHHHHHHHCCCCC
Q 004814 683 LRLYKEMLDREIEP 696 (729)
Q Consensus 683 ~~~~~~m~~~~~~p 696 (729)
.+++++|.+.|+++
T Consensus 548 ~~v~~~m~~~g~~k 561 (697)
T PLN03081 548 AKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHcCCcc
Confidence 99999999998763
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=367.74 Aligned_cols=605 Identities=14% Similarity=0.045 Sum_probs=493.5
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhh--HHH----hhc---------
Q 004814 101 REKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGIL--DVL----IGG--------- 165 (729)
Q Consensus 101 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~~l----~~~--------- 165 (729)
.++++.|+..|+.+.+.. +.+...+..+..++...|++++|...+++++...|.... ..+ ...
T Consensus 274 ~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 274 KKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred hcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 456666666666655432 122334444555566666666666666666655443200 000 000
Q ss_pred ----CCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC
Q 004814 166 ----GLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKP 241 (729)
Q Consensus 166 ----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~ 241 (729)
....+.+..++..++..|.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+.+.+.+ +.
T Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 429 (899)
T TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PE 429 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-Cc
Confidence 0011224667888888999999999999999999887644 56677788888889999999999999888765 34
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 004814 242 SIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIIC 321 (729)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 321 (729)
+......++..+.+.|++++|.++++++... .+++..++..+...+...|++++|.+.|+++.+.. +.+...+..++.
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 507 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLAR 507 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHH
Confidence 4556677888899999999999999998875 45577889999999999999999999999998865 346677888899
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 004814 322 GYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGE 401 (729)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 401 (729)
.+...|++++|.+.++++...++. +..++..+...+.+.|+.++|...++++...++ .+...+..++..+...|++++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999887544 778889999999999999999999999988765 567788889999999999999
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 402 AFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLR 481 (729)
Q Consensus 402 A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (729)
|..+++++.+.. +.+..+|..+..++...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...++++.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998754 4577889999999999999999999999998875 55778889999999999999999999999998
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 482 KGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITY 561 (729)
Q Consensus 482 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 561 (729)
... .+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.++++.... |+..++
T Consensus 664 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 664 LKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 643 357788889999999999999999999998875 6778888899999999999999999999999875 445777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRL 641 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 641 (729)
..++.++.+.|++++|.+.++++.+.. +.+...+..++..|...|++++|...|+++.+.. +.+...++.++..+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 888999999999999999999999875 6778899999999999999999999999999874 45788899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc-HHHH
Q 004814 642 RRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH-AVEY 720 (729)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~-a~~~ 720 (729)
|+ ++|+.+++++.+.. +.+...+..++.++...|++++|.++++++++.+.. +..++..+ +..+.+.|+.+ |.+.
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l-~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHL-ALALLATGRKAEARKE 893 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHH-HHHHHHcCCHHHHHHH
Confidence 99 88999999999863 456678889999999999999999999999954332 45555555 99999999998 9999
Q ss_pred HHHhh
Q 004814 721 LESLT 725 (729)
Q Consensus 721 l~~l~ 725 (729)
++++.
T Consensus 894 ~~~~~ 898 (899)
T TIGR02917 894 LDKLL 898 (899)
T ss_pred HHHHh
Confidence 99875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=356.64 Aligned_cols=606 Identities=15% Similarity=0.060 Sum_probs=492.9
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHH------hhcC--------
Q 004814 101 REKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVL------IGGG-------- 166 (729)
Q Consensus 101 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l------~~~~-------- 166 (729)
.++.+.|...|+.+.+.. +.+...+.....++...|++++|...++++++.+|....... ...+
T Consensus 240 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 317 (899)
T TIGR02917 240 AGEFEEAEKHADALLKKA--PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY 317 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Confidence 578999999999987644 345566666777788899999999999999988775311000 0000
Q ss_pred -----CCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC
Q 004814 167 -----LSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKP 241 (729)
Q Consensus 167 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~ 241 (729)
...+.+...+..++..+.+.|++++|...++++.+..+. +...+..+...+.+.|++++|.++|+++.+.. +.
T Consensus 318 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 395 (899)
T TIGR02917 318 LNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PE 395 (899)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 001224556677788888888888888888888876643 66777888888888888888888888887764 45
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 004814 242 SIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIIC 321 (729)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 321 (729)
+...+..+...+...|++++|.+.|+++.+... ........++..+.+.|++++|.++++++.+.. +.+..++..+..
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 473 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGA 473 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 667788888888888888888888888877632 234455667788888899999999998888754 457778899999
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 004814 322 GYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGE 401 (729)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 401 (729)
.+...|++++|.+.|+++.+..+. +...+..++..+...|++++|.+.++++...++ .+..++..+...+.+.|+.++
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998876443 566777888899999999999999999988765 577888889999999999999
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 402 AFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLR 481 (729)
Q Consensus 402 A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (729)
|...++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..++..+.+.|++++|...++++.+
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999987764 3466777888899999999999999999998764 56788899999999999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 482 KGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITY 561 (729)
Q Consensus 482 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 561 (729)
... .+...+..+...+.+.|++++|...++.+.+.. +.+..++..++..+...|++++|.++++.+.+.. +.+...+
T Consensus 630 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 706 (899)
T TIGR02917 630 LQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGF 706 (899)
T ss_pred hCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHH
Confidence 643 356778888889999999999999999998864 6678889999999999999999999999998876 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRL 641 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 641 (729)
..+...+...|++++|.+.++.+...+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..++..|...
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 888899999999999999999998874 555778888999999999999999999998864 44778889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc-HHHH
Q 004814 642 RRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH-AVEY 720 (729)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~-a~~~ 720 (729)
|+.++|...|+++.+.+ +++..++..++..+...|+ ++|+..+++++ ...|+.......++..+...|+.+ |.+.
T Consensus 784 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKAL--KLAPNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH--hhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999875 6678889999999999999 88999999998 556665554445588888889998 9888
Q ss_pred HHHhhc
Q 004814 721 LESLTL 726 (729)
Q Consensus 721 l~~l~~ 726 (729)
+++...
T Consensus 860 ~~~a~~ 865 (899)
T TIGR02917 860 LRKAVN 865 (899)
T ss_pred HHHHHh
Confidence 877653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-28 Score=283.51 Aligned_cols=608 Identities=11% Similarity=-0.002 Sum_probs=417.4
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHH-HhhcCCCCcchHHHHHHH
Q 004814 101 REKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDV-LIGGGLSSCVSIKILDLL 179 (729)
Q Consensus 101 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l 179 (729)
+++++.|...+..+.... +.|+..+..++.++.+.|+.++|...++++.+..|....-. +.........+.+....+
T Consensus 41 ~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 41 THREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred hCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHH
Confidence 578899999998887644 45889999999999999999999999999999988741110 000000011123334566
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM 259 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (729)
++.+.+.|++++|++.|+++.+.++.................|+.++|++.++++.+.. +.+...+..+...+...|+.
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCH
Confidence 77899999999999999999986543221111122222334699999999999999875 56778889999999999999
Q ss_pred HHHHHHHHHHHhCCC------------------CCCH-HHHH----------------------------------HHHH
Q 004814 260 QEALELLWEMQGRGC------------------SPNG-VTYN----------------------------------VLIT 286 (729)
Q Consensus 260 ~~A~~~~~~m~~~~~------------------~p~~-~~~~----------------------------------~li~ 286 (729)
++|++.++++..... .++. ..+. ....
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 999999998865321 0000 0000 1123
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHH------------HH
Q 004814 287 GFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPT-LATY------------NI 353 (729)
Q Consensus 287 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~------------~~ 353 (729)
.+...|++++|+..|++.++.. +.+..++..+...+.+.|++++|+..|++..+...... ...| ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 3455677777777777777654 23566677777777777777777777777766533211 1111 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 004814 354 LIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGD 433 (729)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 433 (729)
....+.+.|++++|.+.|++++...+ .+...+..+...+...|++++|++.|+++.+.. +.+...+..+...+. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 23455667777777777777776554 445566667777777777777777777776643 223444445555543 345
Q ss_pred HHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 004814 434 LEVAQQLKENMINQGIL--------PDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTS 505 (729)
Q Consensus 434 ~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 505 (729)
.++|..+++.+...... .....+..+...+...|++++|++.++++++.... +...+..+...+.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 67776666554321100 01123445566677788888888888888876432 4566677778888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcCCHHH
Q 004814 506 EAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHI---------TYTSIIHASLEMGDLRR 576 (729)
Q Consensus 506 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~l~~~~~~~g~~~~ 576 (729)
+|...++++++.. |.+...+..+...+...++.++|...++.+......++.. .+..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 8888888887653 4556666666666677888888888887765432222221 12345566788899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 577 GRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
|.++++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..|...|+.++|++.++++.+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9988872 25667788889999999999999999999999863 33677889999999999999999999998887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC---H-HHHHHHHHhhhccchhhc-HHHHHHHhh
Q 004814 657 EGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREI-EPD---Y-CTHSALLLKQLDKDYKVH-AVEYLESLT 725 (729)
Q Consensus 657 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~pd---~-~~~~~ll~~~l~~~g~~~-a~~~l~~l~ 725 (729)
.. +.+...+..+..++...|++++|.+++++++.... .|+ . ..+..+ +..+.+.|+.+ |++.+++-.
T Consensus 666 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~-a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 666 TA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDA-ARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Confidence 52 34556778888999999999999999999985322 121 1 233333 78888899998 888876653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-26 Score=273.71 Aligned_cols=571 Identities=12% Similarity=0.009 Sum_probs=387.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
....-..+++....++.+.|...+++++..+|+ ++.++..++..+.+.|+.++|.+.++++.+..
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~---------------~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~ 92 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELIDPN---------------NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA 92 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 344666777888899999999999999999887 57888899999999999999999999999987
Q ss_pred CCCChHhH----------------HHHHHHHHHCCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHH
Q 004814 204 LLPDVKNC----------------NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIV-TYNTMLDSFCKEGEMQEALELL 266 (729)
Q Consensus 204 ~~~~~~~~----------------~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 266 (729)
+. +.... ......+.+.|++++|.+.|+.+.+.+ +|+.. ....+.......|+.++|++.|
T Consensus 93 P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L 170 (1157)
T PRK11447 93 PD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQL 170 (1157)
T ss_pred CC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHH
Confidence 54 32222 334457889999999999999999765 44432 1111222223469999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc----------------cCh---hhHH----------
Q 004814 267 WEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLK----------------VSA---HSYN---------- 317 (729)
Q Consensus 267 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------------~~~---~~~~---------- 317 (729)
+++.+.. +.+...+..+...+...|+.++|.+.++++.+.... ++. ..+.
T Consensus 171 ~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~ 249 (1157)
T PRK11447 171 QRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD 249 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch
Confidence 9999872 446677888999999999999999999998653210 000 0010
Q ss_pred ------------------------HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 318 ------------------------PIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFE 373 (729)
Q Consensus 318 ------------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (729)
.....+...|++++|+..|++..+..+. +...+..+...+.+.|++++|+..|++
T Consensus 250 ~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~ 328 (1157)
T PRK11447 250 SVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEK 328 (1157)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1123344556666666666666664332 555666666666666666666666666
Q ss_pred HHHCCCCC-CHhHH------------HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 004814 374 MLRKNVIP-DIISY------------NTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQL 440 (729)
Q Consensus 374 ~~~~~~~~-~~~~~------------~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 440 (729)
.++..+.. +...| ......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.
T Consensus 329 Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~ 407 (1157)
T PRK11447 329 ALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERY 407 (1157)
T ss_pred HHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66544211 11111 112334556666666666666666543 22444555566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 004814 441 KENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQ--------PDRFAYTTQIAGELKLGDTSEAYRLQE 512 (729)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~ 512 (729)
|+++++.. +.+...+..+...|. .++.++|+.+++.+...... .....+......+...|++++|+..++
T Consensus 408 y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 408 YQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666553 334445555555543 34556666665543321000 001123334456667888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 513 EMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT 592 (729)
Q Consensus 513 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 592 (729)
+.++.. |.+...+..+...|.+.|++++|...++++++..+. +...+..+...+...++.++|...++.+......++
T Consensus 486 ~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~ 563 (1157)
T PRK11447 486 QRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN 563 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh
Confidence 887764 556677777888888888888888888888765432 444444445556677888888888776543321111
Q ss_pred h---------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004814 593 L---------VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNK 663 (729)
Q Consensus 593 ~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (729)
. ..+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+.
T Consensus 564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~ 637 (1157)
T PRK11447 564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNA 637 (1157)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 1 1123455677888999999988772 24466677889999999999999999999999874 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc-HHHHHHHhhc
Q 004814 664 YTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH-AVEYLESLTL 726 (729)
Q Consensus 664 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~-a~~~l~~l~~ 726 (729)
..+..++..+...|++++|++.+++++ ...|+.......++.++.+.|+.+ |.+.++++..
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll--~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLP--ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHh--ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 889999999999999999999999988 567776555555588888999998 9998888643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-24 Score=241.06 Aligned_cols=588 Identities=12% Similarity=0.024 Sum_probs=418.8
Q ss_pred ChHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCC
Q 004814 89 DPELLVRVLNRIREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLS 168 (729)
Q Consensus 89 ~~~~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (729)
++.+....+...+++++.|+..|+.+.+.. +.+..++..++.++...|++++|+..++++++.+|.
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~------------ 110 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG------------ 110 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc------------
Confidence 555566666677799999999999998754 467899999999999999999999999999999886
Q ss_pred CcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH--------HHHCCChhHHHHHHHHHHhCCCC
Q 004814 169 SCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKV--------LRDNGFSVKAREVYRMMGEFGIK 240 (729)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--------l~~~g~~~~A~~~~~~~~~~~~~ 240 (729)
+...+..+... +++++|..+++++.+..+. +..++..+... |.+. ++|.+.++ .......
T Consensus 111 ---n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~ 178 (987)
T PRK09782 111 ---DARLERSLAAI----PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAAS 178 (987)
T ss_pred ---cHHHHHHHHHh----ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCC
Confidence 34444444332 8889999999999987655 45555555554 5555 44544444 3222223
Q ss_pred CChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhCCCccChhhHHH
Q 004814 241 PSIVTYNTM-LDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSR-NGELEQARGLIRDMLKLGLKVSAHSYNP 318 (729)
Q Consensus 241 ~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 318 (729)
|+..+.... .+.|.+.|++++|++.+.++.+.+. .+..-...|..+|.. .++ +++..+++.. ++.+...+..
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~a 252 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRIT 252 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHH
Confidence 344444444 8899999999999999999998853 345556677778887 466 7777775542 2357888899
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHH------------------------------HHHHHHHHhcCCHHHH
Q 004814 319 IICGYSEKGLLVEALNLEEEMVTRGVA-PTLATY------------------------------NILIYGLCKWGRVSDA 367 (729)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~------------------------------~~li~~~~~~g~~~~A 367 (729)
++..|.+.|+.++|.++++++...-.. |...+| ..++..+.+.++++.+
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA 332 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999887653211 222221 1124555566666655
Q ss_pred HHHHH-----------------------------HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C-CCC
Q 004814 368 RHRFF-----------------------------EMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSR-N-LVP 416 (729)
Q Consensus 368 ~~~~~-----------------------------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~-~~~ 416 (729)
.++.. .|.... +.+....-.+.-...+.|+.++|.++|+..... + -.+
T Consensus 333 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (987)
T PRK09782 333 QKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL 411 (987)
T ss_pred HHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc
Confidence 44422 111111 113333333444456788899999999887662 1 222
Q ss_pred CHhhHHHHHHHHHhcCC---HHHHHHH----------------------H---HHHHHCCCCC--CHHHHHHHHHHHHhc
Q 004814 417 TVVTYNTLIDGLCRYGD---LEVAQQL----------------------K---ENMINQGILP--DVITYTIMVNGSCKM 466 (729)
Q Consensus 417 ~~~~~~~ll~~~~~~g~---~~~A~~~----------------------~---~~~~~~~~~~--~~~~~~~l~~~~~~~ 466 (729)
+.....-++..|.+.+. ..++..+ + ...... .++ +...|..+..++..
T Consensus 412 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 412 SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-
Confidence 34444466777776655 2333222 1 122211 134 67788888887776
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 467 GNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELL 546 (729)
Q Consensus 467 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 546 (729)
++.++|+..+.+.... .|+......+...+.+.|++++|...++.+... +|+...+..+...+.+.|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7888999988888876 466554444455557899999999999987664 555556677788889999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004814 547 RKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP 626 (729)
Q Consensus 547 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 626 (729)
++.++..+ .+...+..+.....+.|++++|...+++.++. .|+...|..+..++.+.|++++|+..+++..+.. +.
T Consensus 566 ~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 99988752 23333444444555669999999999999987 4678889999999999999999999999999874 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLL 706 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~ 706 (729)
+...++.+..++...|+.++|+..+++..+.. +-+...+..+..++...|++++|+..+++++ ...|+......-..
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al--~l~P~~a~i~~~~g 718 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVI--DDIDNQALITPLTP 718 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCchhhhhhh
Confidence 66788889999999999999999999999863 5567788999999999999999999999999 67787755554547
Q ss_pred hhhccchhhc-HHHHHH
Q 004814 707 KQLDKDYKVH-AVEYLE 722 (729)
Q Consensus 707 ~~l~~~g~~~-a~~~l~ 722 (729)
+.+.+.+.++ |.+-+.
T Consensus 719 ~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 719 EQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 7777777776 655443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-23 Score=234.99 Aligned_cols=552 Identities=13% Similarity=-0.005 Sum_probs=400.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChH
Q 004814 130 ILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVK 209 (729)
Q Consensus 130 l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 209 (729)
....+...|++++|+..|+++++.+|. +..++..|+..|.+.|++++|+..+++.++..+. |..
T Consensus 50 ~a~~~~~~Gd~~~A~~~l~~Al~~dP~---------------n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~ 113 (987)
T PRK09782 50 KALKAQKNNDEATAIREFEYIHQQVPD---------------NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DAR 113 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHH
Confidence 333445569999999999999999997 5778899999999999999999999999998652 444
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH--------HHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 210 NCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS--------FCKEGEMQEALELLWEMQGRGCSPNGVTY 281 (729)
Q Consensus 210 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 281 (729)
.+..+ ..+ +++++|..+|+++.+.. +-+..++..+... |.+. ++|.+.++ .......|+..+.
T Consensus 114 ~~~~L-a~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL 184 (987)
T PRK09782 114 LERSL-AAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTL 184 (987)
T ss_pred HHHHH-HHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHH
Confidence 44444 323 89999999999999875 5567777776666 6555 55555555 3333334445544
Q ss_pred HHH-HHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 282 NVL-ITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE-KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLC 359 (729)
Q Consensus 282 ~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 359 (729)
... ...|.+.|++++|++++.++.+.+. .+......+...|.. .++ +++..+++.. +.-+...+..++..|.
T Consensus 185 ~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi 258 (987)
T PRK09782 185 RTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALA 258 (987)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHH
Confidence 444 8999999999999999999999873 456667778888888 477 8888886542 3358889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCHhHH------------------------------HHHHHHHHHcCCHHHHHHHHH-
Q 004814 360 KWGRVSDARHRFFEMLRKNVI-PDIISY------------------------------NTLLYGYCRSGNIGEAFLLFD- 407 (729)
Q Consensus 360 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~------------------------------~~li~~~~~~g~~~~A~~l~~- 407 (729)
+.|+.++|.+++.++...... |+..+| ..++..+.+.++++.+.++..
T Consensus 259 ~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (987)
T PRK09782 259 YRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLAT 338 (987)
T ss_pred HCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 999999999999987654221 222222 122455566666665555422
Q ss_pred ----------------------------HHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHH
Q 004814 408 ----------------------------ELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ--GILPDVITYT 457 (729)
Q Consensus 408 ----------------------------~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 457 (729)
.|.+. .+-+....-.+.-...+.|+.++|.++++..... +...+.....
T Consensus 339 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 339 LPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 11110 0112223333333456678888999998888762 1223455566
Q ss_pred HHHHHHHhcCC---HHHHHHH----------------------HHHHHHC-CC-CC--CHhhHHHHHHHHHhcCCHHHHH
Q 004814 458 IMVNGSCKMGN---LSMAREF----------------------FNEMLRK-GL-QP--DRFAYTTQIAGELKLGDTSEAY 508 (729)
Q Consensus 458 ~l~~~~~~~g~---~~~A~~~----------------------~~~~~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~ 508 (729)
.++..|.+.+. ..++..+ +...... +. .+ +...+..+..++.. ++.++|+
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 77788877765 3333332 1111111 11 22 45666777777766 8888999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 509 RLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKG 588 (729)
Q Consensus 509 ~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 588 (729)
..+.+.... .|+......+...+...|++++|...++++... .|+...+..+...+.+.|+.++|...+++.++..
T Consensus 497 ~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 497 YAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 988888776 355544445555667899999999999998765 3444556677788899999999999999998875
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004814 589 LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTI 668 (729)
Q Consensus 589 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 668 (729)
+++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|+.++|+..+++..+.. +.+...+..
T Consensus 573 -P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~n 648 (987)
T PRK09782 573 -LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAA 648 (987)
T ss_pred -CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 444444444445555679999999999999985 5678899999999999999999999999999974 556678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc-HHHHHHHh
Q 004814 669 LINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH-AVEYLESL 724 (729)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~-a~~~l~~l 724 (729)
+..++...|++++|+..+++++ ...|+.......++.++...|+.+ |.+.+++.
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL--~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAH--KGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999 678876665555599999999998 88877664
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-22 Score=207.38 Aligned_cols=568 Identities=14% Similarity=0.064 Sum_probs=435.9
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHH
Q 004814 104 PRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIY 183 (729)
Q Consensus 104 ~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 183 (729)
.+.|..-|+.+.++. ++|+-.+---+.+....|+|..|..+|.+++...|.... .+...+..++
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a--------------D~rIgig~Cf 209 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKA--------------DVRIGIGHCF 209 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC--------------CccchhhhHH
Confidence 478999999998876 578877777777778889999999999999988776322 2223345677
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHC---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDN---GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ 260 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (729)
.+.|+.+.|+..|.++++.++. ++.++-.|...-... ..+..+...+...-..+ +.|+...+.|.+.|.-.|+++
T Consensus 210 ~kl~~~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~ 287 (1018)
T KOG2002|consen 210 WKLGMSEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYE 287 (1018)
T ss_pred HhccchhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHH
Confidence 8999999999999999997652 444444443333333 34567777777776655 678899999999999999999
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 261 EALELLWEMQGRGCS--PNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEE 338 (729)
Q Consensus 261 ~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (729)
.+..+.+.+...... .-...|-.+.++|-..|++++|...|.+..+....-.+..+..+...|.+.|+++.+...|+.
T Consensus 288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHH
Confidence 999999998875311 123357788999999999999999999998875333355667788999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH----h
Q 004814 339 MVTRGVAPTLATYNILIYGLCKWG----RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDEL----R 410 (729)
Q Consensus 339 m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~ 410 (729)
..+..+. +..+...|...|...+ ..+.|..++.+..+..+ .|...|..+...+.... ...++..|... .
T Consensus 368 v~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 368 VLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQTD-PWASLDAYGNALDILE 444 (1018)
T ss_pred HHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHH
Confidence 9987433 6677777888887775 45677777777776553 67778888777776544 44446666544 3
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 411 SRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ---GIL------PDVITYTIMVNGSCKMGNLSMAREFFNEMLR 481 (729)
Q Consensus 411 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (729)
..+-.+.+...|.+.......|++..|...|...... ... ++..+-..+...+-..++++.|.+.|..+.+
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4455577889999999999999999999999988765 112 2333455577777888999999999999998
Q ss_pred CCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH
Q 004814 482 KGLQPDR-FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDG-FIPDHI 559 (729)
Q Consensus 482 ~g~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~ 559 (729)
. .|.- ..|..+.......+...+|...+.+.+..+ ..++..+..+...+.+...+..|.+-|..+.+.- ..+|..
T Consensus 525 e--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 525 E--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred H--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 7 3443 334444434445678889999999988764 6677888888888988888888888777665542 235777
Q ss_pred HHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004814 560 TYTSIIHASLE------------MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN 627 (729)
Q Consensus 560 ~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 627 (729)
+..+|.+.|.+ .+..++|+++|.+.++.. |-|...-|.++-+++..|++.+|..+|.+..+... -+
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~ 679 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DF 679 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hC
Confidence 77777776543 345788999999999875 67888889999999999999999999999998743 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 628 VITYNALINGLCRLRRIDQAYGLFIDMEEEG-ILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 628 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
..+|-.++.+|..+|++..|++.|+...++- -..+..+...|.+++.+.|++.+|.+....++ ...|...
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~--~~~p~~~ 750 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR--HLAPSNT 750 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhCCccc
Confidence 5678899999999999999999999988753 34466788999999999999999999999988 5555443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-23 Score=206.79 Aligned_cols=447 Identities=18% Similarity=0.146 Sum_probs=334.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 004814 246 YNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE 325 (729)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 325 (729)
...|.+-..+.|++++|++.-...-.. -+.+......+-..+.+..+.+...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 345556666777777777765444333 12222333334455666666665554444444432 3355677778888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH-HHHHHHHHHHcCCHHHHHH
Q 004814 326 KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIIS-YNTLLYGYCRSGNIGEAFL 404 (729)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~ 404 (729)
.|++++|+.+++.+++..+. .+..|..+..++...|+.+.|.+.|.+.++.+ |+... ...+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 88888888888888876443 66778888888888888888888888877754 44333 3344555566788888888
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 405 LFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGL 484 (729)
Q Consensus 405 l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 484 (729)
.|.+..+.. +-=...|+.|...+-.+|+...|++.|++..+.+ +.-...|..|...|...+.+++|...|.+....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 887776653 1234567778888888888888888888888764 334567888888888888888888888888775
Q ss_pred CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 485 QP-DRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTS 563 (729)
Q Consensus 485 ~~-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 563 (729)
.| ....+..+...|..+|..+-|+..+++.++.. |.-...|+.|..++-..|+..+|...+.+.+...+. ...+.+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 33 35666777777888899999999998888863 445789999999999999999999999999887432 4567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLR 642 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 642 (729)
|...|...|.+++|..+|....+-. +.-....+.|...|-++|++++|+..+++++. +.|+ ...|+.++..|-..|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 9999999999999999999988763 33466788999999999999999999999987 5776 458899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhc
Q 004814 643 RIDQAYGLFIDMEEEGILPNK-YTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLD 710 (729)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~ 710 (729)
+++.|++.+.+++. +.|.. ..++.|..+|..+|+..+|++-|++++ .++||.+....-++.++.
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHHHHHHH
Confidence 99999999999988 45654 478899999999999999999999999 788886554443344443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-20 Score=197.17 Aligned_cols=593 Identities=16% Similarity=0.104 Sum_probs=429.3
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHc
Q 004814 106 IALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTK 185 (729)
Q Consensus 106 ~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 185 (729)
.|-..|+-+.+..-..++...+......+.....++.|...|..+++..|..++..+. -+.....
T Consensus 112 ~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlG---------------kA~i~yn 176 (1018)
T KOG2002|consen 112 KATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLG---------------KARIAYN 176 (1018)
T ss_pred HHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHH---------------HHHHHhc
Confidence 3444455443322222333333333333333334678888888888887765433322 2233457
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHH
Q 004814 186 KSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG---EMQEA 262 (729)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A 262 (729)
.|++..|+.+|.+++...+..-+.....+..++.+.|+.+.|+..|.+..+.+ |.++.++..|.-.-.... .+..+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHH
Confidence 78999999999998876543222222345567789999999999999999876 345555555544433333 45567
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc--cChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 263 LELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLK--VSAHSYNPIICGYSEKGLLVEALNLEEEMV 340 (729)
Q Consensus 263 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (729)
...+...-.. ..-|++..+.|.+.|.-.|+++.+..+...+...... .-...|..+.++|-..|++++|...|.+..
T Consensus 256 ~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 256 VQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 7777666554 2447788899999999999999999999999875321 123468889999999999999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC----CHHHHHHHHHHHhhCCCCC
Q 004814 341 TRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSG----NIGEAFLLFDELRSRNLVP 416 (729)
Q Consensus 341 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~~~~ 416 (729)
+....--+..+--|...+.+.|+++.+...|+...+..+ .+..+...|...|...+ ..+.|..++.+..+.- +.
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~ 412 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PV 412 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cc
Confidence 754332244556788999999999999999999998764 56778888888888775 5677888888777653 45
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH-
Q 004814 417 TVVTYNTLIDGLCRYGDLEVAQQLKENMI----NQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK---GLQPDR- 488 (729)
Q Consensus 417 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~~~~- 488 (729)
|...|..+...+... +...+...+..+. ..+..+.+...|.+...+...|++.+|...|...... ...+|.
T Consensus 413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 777887777666544 4444466665544 4455677889999999999999999999999998875 222333
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 489 -----FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTS 563 (729)
Q Consensus 489 -----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 563 (729)
.+-..+..++...++.+.|.+.|..+++.. |.-+..|-.++......++..+|...+....... ..++..++.
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 233445667778889999999999999872 3334455555533344577889999999988764 346677778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRKG-LSPTLVTYTVLIHAHAA------------RGRLELAFMYFSEMQVKGIRPNVIT 630 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~g~~p~~~~ 630 (729)
+...+.+..++..|.+-|+.+.+.- ..+|..+...|++.|.+ .+..++|+++|.+++.... -|...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhh
Confidence 8888999999999999777776652 13566666677775542 3457889999999998643 37777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhc
Q 004814 631 YNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLD 710 (729)
Q Consensus 631 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~ 710 (729)
-|.++-.+...|++.+|..+|.+..+.. .....+|..++++|..+|+|-.|++.|+..+..-.+.+......+|+.++.
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWY 727 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 7889999999999999999999999864 345678999999999999999999999999865555555555666699999
Q ss_pred cchhhc-HHHHHH
Q 004814 711 KDYKVH-AVEYLE 722 (729)
Q Consensus 711 ~~g~~~-a~~~l~ 722 (729)
+.|.+. |.+.+.
T Consensus 728 ~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 728 EAGKLQEAKEALL 740 (1018)
T ss_pred HhhhHHHHHHHHH
Confidence 999987 777653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-22 Score=200.74 Aligned_cols=446 Identities=15% Similarity=0.136 Sum_probs=345.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP 206 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 206 (729)
...+.+-+.+.|++++|.+....+...+|.. ....-.+..+|.+..+.+.....-....+..+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~---------------~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q- 114 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTN---------------TERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ- 114 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCc---------------ccceeeehhhhhcccchhhhhhhhhhhhhccch-
Confidence 5678888999999999998887777777653 122223445566777777776666666665443
Q ss_pred ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 004814 207 DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTY-NVLI 285 (729)
Q Consensus 207 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li 285 (729)
-..+|..+.+.+...|++++|+.+|+.+++.. +..+..|..+..++...|+.+.|.+.|.+..+. .|+.... ..+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 56678889999999999999999999999875 556889999999999999999999999988875 5665543 3455
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 286 TGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVS 365 (729)
Q Consensus 286 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 365 (729)
..+-..|+.++|..-+.+.++... --..+|+.|...+-..|+...|+..|++.++..+. -...|..|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcch
Confidence 666678999999999999887642 34678899999999999999999999998875332 3467888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 366 DARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPT-VVTYNTLIDGLCRYGDLEVAQQLKENM 444 (729)
Q Consensus 366 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~ 444 (729)
+|...+.+.....+ -....+..+...|..+|.+|-|++.|++..+.. |+ ...|+.|..++-..|++.+|.+.+.+.
T Consensus 270 ~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99998888877543 446677778888888999999999999888753 33 567888999999999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 445 INQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD-RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL 523 (729)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 523 (729)
+... +......+.|...|..+|.+++|..+|....+. .|. ....+.+...|-++|++++|+..+++.++-. |.-.
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHH
Confidence 8863 445678888899999999999999999888875 333 4567778888888888888888888887752 3335
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHH
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT-LVTYTVLIHA 602 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 602 (729)
.+|+.+...|-..|+.+.|.+.+.+.+..++. -....+.|...|...|++.+|+.-++..++. +|| +..|..++.+
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHH
Confidence 67888888888888888888888888875422 3456778888888888888888888888875 344 4455555544
Q ss_pred H
Q 004814 603 H 603 (729)
Q Consensus 603 ~ 603 (729)
+
T Consensus 500 l 500 (966)
T KOG4626|consen 500 L 500 (966)
T ss_pred H
Confidence 3
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-19 Score=197.62 Aligned_cols=255 Identities=13% Similarity=0.071 Sum_probs=169.9
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHH
Q 004814 431 YGDLEVAQQLKENMINQG--ILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD-RFAYTTQIAGELKLGDTSEA 507 (729)
Q Consensus 431 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A 507 (729)
.+++++|.+.|+..++.+ .+.....+..+...+...|++++|+..+++.++. .|+ ...+..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 356677777777776653 1223455666666777777777777777777765 233 44566666677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 508 YRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK 587 (729)
Q Consensus 508 ~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (729)
...++.+++.. +.+..+|..+...+...|++++|...|++.++..+ .+...+..+...+.+.|++++|...+++.++.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777776653 55567777777777777778888877777777642 24556666777777778888888888777765
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004814 588 GLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI------TYNALINGLCRLRRIDQAYGLFIDMEEEGILP 661 (729)
Q Consensus 588 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (729)
. +.+...++.+...+...|++++|++.|++..+.....+.. .++..+..+...|++++|.+++++..+.+ +.
T Consensus 463 ~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~ 540 (615)
T TIGR00990 463 F-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PE 540 (615)
T ss_pred C-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC
Confidence 3 4456677777777777888888888887777642211111 11222223334577888888888777653 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 662 NKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 662 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
+...+..++..+.+.|++++|++.|+++++
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444677777888888888888888888773
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-19 Score=195.95 Aligned_cols=430 Identities=12% Similarity=-0.019 Sum_probs=210.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.+..++..|.+.|++++|+..|+++++.. |+...|..+..+|.+.|++++|++.++..++.. +.+..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 35567778888888888888888888754 566677788888888888888888888888765 456778888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
..|++++|+..|......+...+. ....++..+.. ..+........+.. +.+...+..+...+ ...+...+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 888888888887766544211111 11111111111 12223333333322 22222333222221 1111111111
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 335 LEEEMVTRGVAPTL-ATYNILIYG---LCKWGRVSDARHRFFEMLRKN--VIPDIISYNTLLYGYCRSGNIGEAFLLFDE 408 (729)
Q Consensus 335 ~~~~m~~~g~~p~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 408 (729)
-+.+..+. .+.. ..+..+... ....+++++|.+.|+..+..+ .+.+...++.+...+...|++++|+..+++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111100 0000 001111100 012244555555555555432 112233444455555555555555555555
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 409 LRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR 488 (729)
Q Consensus 409 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 488 (729)
..+.. +.+...|..+...+...|++++|...++++++.. +.+..+|..+...+...|++++|+..|++.++..
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~----- 429 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD----- 429 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence 54432 1123344444445555555555555555554442 2334445555555555555555555555554432
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 489 FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHAS 568 (729)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (729)
|.+...+..+...+.+.|++++|+..+++.++.. +.+...++.+...+
T Consensus 430 -------------------------------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 430 -------------------------------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELL 477 (615)
T ss_pred -------------------------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3334444444445555555555555555544432 11344444455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 569 LEMGDLRRGRDLFNNMLRKGLSPTL------VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLR 642 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 642 (729)
...|++++|.+.|++.+......+. ..++..+..+...|++++|.+++++..+... .+...+..++..+...|
T Consensus 478 ~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 478 LDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQG 556 (615)
T ss_pred HHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcc
Confidence 5555555555555554443210000 0111111222234566666666666555421 13334555666666666
Q ss_pred CHHHHHHHHHHHHH
Q 004814 643 RIDQAYGLFIDMEE 656 (729)
Q Consensus 643 ~~~~A~~~~~~m~~ 656 (729)
++++|+++|++..+
T Consensus 557 ~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 557 DVDEALKLFERAAE 570 (615)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666555
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=198.44 Aligned_cols=302 Identities=14% Similarity=0.094 Sum_probs=179.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS---IVTYNTMLDSFCKE 256 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 256 (729)
+..+...|++++|+..|+++.+.++. +..++..+...+...|++++|..+++.+.+.+..++ ..++..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 44456677777788888887776543 455667777777777777777777777766431111 24566677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccCh----hhHHHHHHHHHhCCCHHHH
Q 004814 257 GEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSA----HSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 257 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A 332 (729)
|++++|..+|+++.+. .+++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 7777777777777664 2345566777777777777777777777777665432211 1234455555666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004814 333 LNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSR 412 (729)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 412 (729)
.+.++++.+.... +...+..+...+.+.|++++|.+.++++...++.....+++.++.+|+..|+.++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666654322 344555556666666666666666666655432222344555556666666666666666665554
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 004814 413 NLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCK---MGNLSMAREFFNEMLRKGLQPDR 488 (729)
Q Consensus 413 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~ 488 (729)
. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..++. .|+.+++..+++++.+.++.|++
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 2 33344455555556666666666666555554 3455555555554443 33555555555555554444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-20 Score=196.12 Aligned_cols=259 Identities=17% Similarity=0.125 Sum_probs=112.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCCH
Q 004814 358 LCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPT---VVTYNTLIDGLCRYGDL 434 (729)
Q Consensus 358 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~ 434 (729)
+...|++++|...|.++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3444555555555555555432 2334455555555555555555555555544321111 12344555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHH
Q 004814 435 EVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR----FAYTTQIAGELKLGDTSEAYRL 510 (729)
Q Consensus 435 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l 510 (729)
++|..+++++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555555432 334455555555555666666666665555554322111 0112222333334444444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004814 511 QEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLS 590 (729)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 590 (729)
++++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 44433321 22233333344444444444444444444443321111223333344444444444444444444333 1
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 591 PTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 591 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
|+...+..++..+.+.|++++|..+++++.+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2223333334444444444444444444333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-18 Score=192.50 Aligned_cols=335 Identities=13% Similarity=0.071 Sum_probs=278.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL 204 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 204 (729)
...-.++..+.+.|++++|..+++..+...|. +...+..++......|++++|+..|+++.+..+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~---------------~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P 107 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKN---------------GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV 107 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC---------------chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC
Confidence 33445667788999999999999999988776 466677777888899999999999999999876
Q ss_pred CCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004814 205 LPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVL 284 (729)
Q Consensus 205 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 284 (729)
. +...+..+...+.+.|++++|...|+++.+.. +.+...+..++..+...|++++|...++.+..... .+...+..+
T Consensus 108 ~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~ 184 (656)
T PRK15174 108 C-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC 184 (656)
T ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 5 67788889999999999999999999999864 56678899999999999999999999998877632 233344333
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 285 ITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRV 364 (729)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 364 (729)
..+.+.|++++|...++.+++....++...+..+...+...|++++|...++++....+. +...+..+...+...|++
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRS 262 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCc
Confidence 347889999999999999988754445555566678889999999999999999987544 677888899999999999
Q ss_pred HH----HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 004814 365 SD----ARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQL 440 (729)
Q Consensus 365 ~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 440 (729)
++ |...|++.....+ .+...+..+...+...|++++|+..+++..... +.+...+..+..++.+.|++++|...
T Consensus 263 ~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 263 REAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred hhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 86 8999999998765 467889999999999999999999999998864 33566777888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 441 KENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
++++.+.+ +.+...+..+..++...|+.++|...|+++.+.
T Consensus 341 l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 341 FVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99998864 223344555677889999999999999999887
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-16 Score=164.94 Aligned_cols=599 Identities=15% Similarity=0.095 Sum_probs=373.6
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHH
Q 004814 100 IREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLL 179 (729)
Q Consensus 100 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 179 (729)
.+|+.+.|..++..+.++. +.+...|.+++.++-..|+.+.+....-.+-..+|. +...|..+
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---------------d~e~W~~l 213 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---------------DYELWKRL 213 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---------------ChHHHHHH
Confidence 3688889999998888776 467888999999999999888887766555555554 46788888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHHh
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIV----TYNTMLDSFCK 255 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~ 255 (729)
.....+.|++++|.-.|.++++..+. +....-.-...|.+.|+...|..-|.++.....+.+.. .--.+++.+..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999887654 44444556777888899999999999888764222222 22234566777
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc-----------------------
Q 004814 256 EGEMQEALELLWEMQGRG-CSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV----------------------- 311 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------------------- 311 (729)
.++.+.|.+.++.....+ -..+...++.++..+.+...++.|.....++......+
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 777788888888776632 23355577888888888888888888887776621111
Q ss_pred ----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 004814 312 ----SAHSYNPIICGYSEKGLLVEALNLEEEMVTRG--VAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIIS 385 (729)
Q Consensus 312 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 385 (729)
+..++ .+.-++......+....+.....+.. +.-++..|.-+..+|...|++.+|+.+|..+.......+...
T Consensus 373 ~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 11221 12222333333333333444444444 444667788888999999999999999999888766667788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHH
Q 004814 386 YNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ--------GILPDVITYT 457 (729)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~ 457 (729)
|..+...|...|.+++|.+.|+...... +-+...-.+|...+.+.|+.++|.+.+..+..- +..|+.....
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 8889999999999999999998887753 234555667777888889999999988886522 2345555556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCC-----------------HhhHHHHHHHHHhcCCHHHHHHHHH---
Q 004814 458 IMVNGSCKMGNLSMAREFFNEMLRKGL-----QPD-----------------RFAYTTQIAGELKLGDTSEAYRLQE--- 512 (729)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~g~-----~~~-----------------~~~~~~li~~~~~~g~~~~A~~l~~--- 512 (729)
.....+.+.|+.++-+.+-..|+..+. -|+ .......+.+-.+.++.....+-..
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~ 610 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT 610 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence 667778888888877666666654211 010 0111111122222222111111000
Q ss_pred ---HHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHH----HHHHHHHHHHhcCCHHHHHHHHH
Q 004814 513 ---EMLAKGFPPDL--ITYNVLVHGLCKLGSLEEANELLRKMVGDGFI-PDHI----TYTSIIHASLEMGDLRRGRDLFN 582 (729)
Q Consensus 513 ---~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~----~~~~l~~~~~~~g~~~~A~~~~~ 582 (729)
-....|...+. ..+..++..+++.+++++|+.+...+...... -+.. .-...+.+.+..+++..|...++
T Consensus 611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR 690 (895)
T KOG2076|consen 611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLR 690 (895)
T ss_pred hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00001111111 23345566667777777777776666553211 1111 12233445556667777766666
Q ss_pred HHHHC-CC---CCChhhHHHH-----------------------------------HHHHHHcCCHHHHHHHHHHHHHCC
Q 004814 583 NMLRK-GL---SPTLVTYTVL-----------------------------------IHAHAARGRLELAFMYFSEMQVKG 623 (729)
Q Consensus 583 ~~~~~-~~---~~~~~~~~~l-----------------------------------~~~~~~~g~~~~A~~~~~~~~~~g 623 (729)
.|... +. +--...|+.. ..-....+.+.-|+..+-++...
T Consensus 691 ~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~- 769 (895)
T KOG2076|consen 691 SVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ- 769 (895)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh-
Confidence 66543 00 1112223311 12223456677788877777664
Q ss_pred CCCCHHHHH-HHHHHHHh----------cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 624 IRPNVITYN-ALINGLCR----------LRRIDQAYGLFIDMEEEGIL-PNKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 624 ~~p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.|+....+ +++.++.. +-.+-+++.++.+..+.... ....++..++++|-..|-..-|..+|++.+
T Consensus 770 -~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL- 847 (895)
T KOG2076|consen 770 -NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL- 847 (895)
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh-
Confidence 45533333 33333221 11244567777666664211 245677789999999999999999999999
Q ss_pred CCCCCCH--------------HHHHHHHHhhhccchhhc-HHHHHHHh
Q 004814 692 REIEPDY--------------CTHSALLLKQLDKDYKVH-AVEYLESL 724 (729)
Q Consensus 692 ~~~~pd~--------------~~~~~ll~~~l~~~g~~~-a~~~l~~l 724 (729)
++.|-. ..|+. .-.|..+|... |.+++++.
T Consensus 848 -~~~p~~~~~~~~d~~dLrkeAA~NL--~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 848 -EVSPKDVTDPKEDNYDLRKEAAYNL--HLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred -CCCccccccccCCcccHHHHHHhhh--hhhhccCCcHHHHHHHHHhh
Confidence 553211 22332 34578899988 88887653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-18 Score=190.68 Aligned_cols=428 Identities=13% Similarity=0.064 Sum_probs=265.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHH
Q 004814 240 KPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPI 319 (729)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 319 (729)
+.+..-..-.+......|+.++|++++.+.... -+.+...+..+...+...|++++|.+++++.++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 344444555566667778888888888877652 13345567777788888888888888888877764 3356667777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 004814 320 ICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNI 399 (729)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 399 (729)
+..+...|++++|+..+++..+..+. +.. +..+...+...|+.++|+..++++.+..+ .+...+..+...+...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh
Confidence 77778888888888888887776332 444 77777777788888888888888877654 3455556667777777777
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHH
Q 004814 400 GEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNL---SMAREFF 476 (729)
Q Consensus 400 ~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~ 476 (729)
++|+..++.... .|+.. . -+ +...+....+.. +.......+++ ++|++.+
T Consensus 167 e~Al~~l~~~~~---~p~~~--~-~l-------~~~~~~~~~r~~--------------~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 167 APALGAIDDANL---TPAEK--R-DL-------EADAAAELVRLS--------------FMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHHHhCCC---CHHHH--H-HH-------HHHHHHHHHHhh--------------cccccChhHHHHHHHHHHHHH
Confidence 777777765543 22210 0 00 000000000000 00000111122 5566666
Q ss_pred HHHHHC-CCCCCHh-hHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 477 NEMLRK-GLQPDRF-AYT----TQIAGELKLGDTSEAYRLQEEMLAKGFP-PDLITYNVLVHGLCKLGSLEEANELLRKM 549 (729)
Q Consensus 477 ~~~~~~-g~~~~~~-~~~----~li~~~~~~g~~~~A~~l~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 549 (729)
+.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 666543 1122211 111 1122344556777777777777665421 221 1122455677777777777777776
Q ss_pred HhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---hhhHHHHHHHHHHcCCHHHH
Q 004814 550 VGDGFIP---DHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL-----------SPT---LVTYTVLIHAHAARGRLELA 612 (729)
Q Consensus 550 ~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A 612 (729)
.+..... .......+..++...|++++|.+.++.+..... .|+ ...+..+...+...|+.++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 6543211 123445555566777777777777777765420 122 22445667778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 613 FMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDR 692 (729)
Q Consensus 613 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 692 (729)
+++++++.... +.+...+..++..+...|+.++|++.+++..+.. |.+...+...+..+.+.|++++|...+++++
T Consensus 379 ~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll-- 454 (765)
T PRK10049 379 EMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVV-- 454 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH--
Confidence 88888888763 3356778888888888888888888888888753 3345566677778888888888888888888
Q ss_pred CCCCCHHHHHHH
Q 004814 693 EIEPDYCTHSAL 704 (729)
Q Consensus 693 ~~~pd~~~~~~l 704 (729)
...|+......+
T Consensus 455 ~~~Pd~~~~~~~ 466 (765)
T PRK10049 455 AREPQDPGVQRL 466 (765)
T ss_pred HhCCCCHHHHHH
Confidence 567776654444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-18 Score=186.32 Aligned_cols=330 Identities=15% Similarity=0.065 Sum_probs=273.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
..+..+.+.|++++|+.+++..+...+. +...+..++.++...|++++|...|+++.+.. |.+...+..+...+.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 3455678899999999999999998766 55666677788888999999999999999875 667788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHH
Q 004814 258 EMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEE 337 (729)
Q Consensus 258 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 337 (729)
++++|...++++.+. .+.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|.+.++
T Consensus 125 ~~~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 999999999999886 2345678888999999999999999999988776533 33344333 34788999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH----HHHHHHHHhhCC
Q 004814 338 EMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGE----AFLLFDELRSRN 413 (729)
Q Consensus 338 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~~ 413 (729)
.+......++...+..+...+.+.|++++|.+.+.+.....+ .+...+..+...+...|++++ |...|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 988765444555566667888999999999999999998765 567788889999999999986 899999988764
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHH
Q 004814 414 LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR-FAYT 492 (729)
Q Consensus 414 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~ 492 (729)
+.+...+..+...+...|++++|...+++.++.. +.+...+..+..++.+.|++++|+..++++.+.+ |+. ..+.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 3367788899999999999999999999999875 4467788888999999999999999999999863 443 3344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 493 TQIAGELKLGDTSEAYRLQEEMLAK 517 (729)
Q Consensus 493 ~li~~~~~~g~~~~A~~l~~~~~~~ 517 (729)
.+...+...|+.++|...++...+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4566788999999999999998876
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-18 Score=189.90 Aligned_cols=405 Identities=13% Similarity=0.028 Sum_probs=195.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.+...-.-.+.+....|+.++|+.++.+....++. +...+..++..+.+.|++++|...++++++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~---------------~a~~~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQL---------------PARGYAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445556666667777776666665543322 344556666666677777777777777666
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTY 281 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 281 (729)
..+. +...+..++.++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+
T Consensus 78 ~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~ 153 (765)
T PRK10049 78 LEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYP 153 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 5432 34445566666666777777777777766653 44455 6666666667777777777777766652 2234444
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCccCh------hhHHHHHHHHH-----hCCCH---HHHHHHHHHHHHC-CCCC
Q 004814 282 NVLITGFSRNGELEQARGLIRDMLKLGLKVSA------HSYNPIICGYS-----EKGLL---VEALNLEEEMVTR-GVAP 346 (729)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p 346 (729)
..+...+...|..++|.+.++...+ .|+. .....++.... ..+++ ++|++.++.+.+. ...|
T Consensus 154 ~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 154 TEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred HHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 5556666666666666666655443 1110 01111111111 11222 4455555555532 1111
Q ss_pred CHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC---C
Q 004814 347 TLA-TY----NILIYGLCKWGRVSDARHRFFEMLRKNVI-PDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVP---T 417 (729)
Q Consensus 347 ~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~---~ 417 (729)
+.. .+ ...+..+...|++++|++.|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+..... .
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 111 11 01122233445566666666665554321 221 11113445555666666666665554432110 0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 418 VVTYNTLIDGLCRYGDLEVAQQLKENMINQGI-----------LPD---VITYTIMVNGSCKMGNLSMAREFFNEMLRKG 483 (729)
Q Consensus 418 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 483 (729)
......+..++.+.|++++|.++++.+.+... .|+ ...+..+...+...|+.++|+++++++....
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12233344445555556666655555554321 011 1123333444444455555555554444432
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004814 484 LQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVG 551 (729)
Q Consensus 484 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 551 (729)
.. +...+..+...+...|++++|++.+++.+... |.+...+...+..+.+.|++++|+.+++++++
T Consensus 390 P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 390 PG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 23334444444444444444444444444432 22333333444444444444444444444444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-16 Score=175.05 Aligned_cols=444 Identities=11% Similarity=0.004 Sum_probs=305.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+..+.+.-.-+-+..+.|++++|+..|+++++.+|.. .+.++ .++..+...|+.++|+..+++..
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~--------------~~av~-dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQ--------------SGQVD-DWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccc--------------hhhHH-HHHHHHHHcCCcHHHHHHHHHhc
Confidence 3344444455556889999999999999999988762 12333 67778888899999999999998
Q ss_pred HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVT 280 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 280 (729)
.... ........++..+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...
T Consensus 96 ~p~n-~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~ 171 (822)
T PRK14574 96 SSMN-ISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQN 171 (822)
T ss_pred cCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHH
Confidence 3211 123333344668888899999999999999876 556778888889999999999999999999886 566666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 004814 281 YNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATY--NILIYGL 358 (729)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~ 358 (729)
+..++..+...++..+|.+.++++.+.. +.+...+..+...+.+.|-...|+++..+-... +.+....+ ...+.-.
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHH
Confidence 6555555555677767999999999885 447778888899999999999998876653321 11111111 0001111
Q ss_pred Hh---------cCC---HHHHHHHHHHHHHC-CCCCCH-h----HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhh
Q 004814 359 CK---------WGR---VSDARHRFFEMLRK-NVIPDI-I----SYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVT 420 (729)
Q Consensus 359 ~~---------~g~---~~~A~~~~~~~~~~-~~~~~~-~----~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 420 (729)
.+ .++ .+.|+.-++.+... +..|.. . ...-.+-++...|++.++++.|+.+...+.+....+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 11 122 34455555555542 111322 1 223445567788889999999998888776655667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------
Q 004814 421 YNTLIDGLCRYGDLEVAQQLKENMINQG-----ILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGL----------- 484 (729)
Q Consensus 421 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----------- 484 (729)
-..+.++|...+++++|..+++.+.... .+++......|.-+|...+++++|..+++.+.+...
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 7788888999999999999998887643 123444456788888888999999999888887411
Q ss_pred --CCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 485 --QPDR-FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITY 561 (729)
Q Consensus 485 --~~~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 561 (729)
.||- .....++..+...|+..+|.+.++++.... |.|......+.+.+...|.+.+|++.++.+.... +-+..+.
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~ 487 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILE 487 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHH
Confidence 1111 122334556667777777777777776653 6677777777777777777777777776665553 2245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRK 587 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (729)
...+.++...+++++|..+.+.+.+.
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 66666777777777777777777665
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-16 Score=172.38 Aligned_cols=457 Identities=15% Similarity=0.088 Sum_probs=281.0
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSI--VTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFS 289 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 289 (729)
..-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.... ..........+...+.
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence 334455678888888888888888764 332 233 7777777888888888888887722 1122333333456777
Q ss_pred hCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 290 RNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARH 369 (729)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 369 (729)
..|++++|.++++++.+..+. ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 778888888888888877533 5666777778888888888888888887765 3455555555555545566666888
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 370 RFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGI 449 (729)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 449 (729)
.++++.+..+ .+...+..+..+..+.|-...|.++..+-. +..+-...... +.+.|.+..+.. .
T Consensus 191 ~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~a----~ 254 (822)
T PRK14574 191 ASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRMA----V 254 (822)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhhc----c
Confidence 8888888764 456667777788888888878776665522 22211111100 011121111111 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHh-----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 450 LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK-GLQPDRF-----AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL 523 (729)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~-----~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 523 (729)
.++..- - .+.--.+.|+.-++.+... +..|... ...-.+.++.+.|++.++++.++.+...+.+...
T Consensus 255 ~~~~~~----~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 255 LPTRSE----T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred cccccc----h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 010000 0 0001234455555554442 1112211 1223345666777777777777777776655455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGF-----IPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL--------- 589 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------- 589 (729)
.+-.++.++|...+++++|..+++.+..... .++......|..++...+++++|..+++++.+...
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 5666777777777777777777777755421 22333346677777777777777777777776310
Q ss_pred --CCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004814 590 --SPT---LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKY 664 (729)
Q Consensus 590 --~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (729)
.|| ...+..++..+...|+..+|++.++++.... +-|......+.+.+...|+..+|.+.++.+.... +-+..
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~ 485 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLI 485 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHH
Confidence 111 1223345566777788888888888887653 3367777778888888888888888886665542 33445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHS 702 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~ 702 (729)
+....+.++...|+|++|..+.+.++ ...|+.....
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~--~~~Pe~~~~~ 521 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVI--SRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH--hhCCCchhHH
Confidence 66677777777788888888887777 5666655433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-14 Score=146.82 Aligned_cols=604 Identities=13% Similarity=0.061 Sum_probs=440.3
Q ss_pred CCChHHHHHHHHHhc-------CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcc-----
Q 004814 87 VSDPELLVRVLNRIR-------EKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVN----- 154 (729)
Q Consensus 87 ~~~~~~~~~vl~~~~-------~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~----- 154 (729)
..||...+.-|++.. +|...|..+++.+.+-. +.++..|.+-.+.=-..|.++.|..+..+--+.-
T Consensus 243 vvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeD 320 (913)
T KOG0495|consen 243 VVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSED 320 (913)
T ss_pred ccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHH
Confidence 346665555555432 25678999999887644 4566677777766667788888877665433322
Q ss_pred ---------chhhhHHHhhcCCCC-cchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCCh
Q 004814 155 ---------MHGILDVLIGGGLSS-CVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFS 224 (729)
Q Consensus 155 ---------~~~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~ 224 (729)
|......++...+.. +.|+.+|-..+.. ..+...=..++++.++.-+. ++..| .+-+.....
T Consensus 321 vWLeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~iP~-sv~LW----KaAVelE~~ 392 (913)
T KOG0495|consen 321 VWLEAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADL---ESDTKNKKRVLRKALEHIPR-SVRLW----KAAVELEEP 392 (913)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhh---hhHHHHHHHHHHHHHHhCCc-hHHHH----HHHHhccCh
Confidence 222222222222111 2233433222211 11222334566666665432 33333 334455566
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004814 225 VKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDM 304 (729)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 304 (729)
+.|+.++.+..+.- +.+...| -++.+..-|+.|.+++....+. ++.+...|.+-...=-.+|+.+...+++++-
T Consensus 393 ~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 393 EDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred HHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77888888888752 3334444 4566677899999999999887 7778888988888888899999998888765
Q ss_pred H----hCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 305 L----KLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP--TLATYNILIYGLCKWGRVSDARHRFFEMLRKN 378 (729)
Q Consensus 305 ~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 378 (729)
+ ..|+..+...|..=...+-..|..-.+..+....+.-|++- -..||+.-.+.|.+.+.++-|+.+|...++.-
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 4 46888888889888888989999999999988888877653 24688888899999999999999999988865
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 379 VIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTI 458 (729)
Q Consensus 379 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 458 (729)
+ .+...|...+..--..|..++-..+|++.... ++.....|......+-..|++..|..++.++.+.. +.+...|..
T Consensus 547 p-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwla 623 (913)
T KOG0495|consen 547 P-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLA 623 (913)
T ss_pred c-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 4 56778888888888889999999999998876 34455566666677778899999999999999875 447788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 459 MVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGS 538 (729)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~ 538 (729)
-+........+++|..+|.+.... .|+...|..-+....-.+..++|.+++++.++. +|.-...|..+.+.+-+.++
T Consensus 624 avKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHH
Confidence 888889999999999999998875 566777777777777788999999999998886 45557788888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 539 LEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSE 618 (729)
Q Consensus 539 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (729)
.+.|.+.|..-.+.- +..+..|-.+...-.+.|.+-+|..+++....++ |.+...|...|.+-.+.|..+.|..+..+
T Consensus 701 ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999888766652 3345678888888888899999999999998876 77888999999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 619 MQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 619 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
+++. ++.+...|..-|....+.++-...+..+++ +.-|+.....+...+....++++|++.|.+.+ .+.||.
T Consensus 779 ALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Rav--k~d~d~ 850 (913)
T KOG0495|consen 779 ALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAV--KKDPDN 850 (913)
T ss_pred HHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCcc
Confidence 8876 555666777777777777775555444433 34567777777888888888889999888888 667764
Q ss_pred H-HHHHHHHhhhccchhhc-HHHHHHH
Q 004814 699 C-THSALLLKQLDKDYKVH-AVEYLES 723 (729)
Q Consensus 699 ~-~~~~ll~~~l~~~g~~~-a~~~l~~ 723 (729)
- +|..+ .....+.|..+ -.+++.+
T Consensus 851 GD~wa~f-ykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 851 GDAWAWF-YKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred chHHHHH-HHHHHHhCCHHHHHHHHHH
Confidence 3 44444 55555555444 5555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-18 Score=161.69 Aligned_cols=503 Identities=17% Similarity=0.154 Sum_probs=320.6
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHH-HHHHHHHHCCChhHHHHHHHHHHhCCCCCC------hh
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN-RIIKVLRDNGFSVKAREVYRMMGEFGIKPS------IV 244 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~------~~ 244 (729)
+..++..|++.|..+.+..+|+..|+-+++....|+.-... .+.+.+.+.+.+..|+++|+..+.. .|+ ..
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHH
Confidence 45567778899999999999999999999988877765433 3667788899999999999988765 233 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 324 (729)
..+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-.+...|+.++..+.|.+|+.....+|..-|.
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi------- 348 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI------- 348 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------
Confidence 4555566678899999999999988776 6787765556666667899999999999998765444433221
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC
Q 004814 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIY-----GLCKWG--RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSG 397 (729)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 397 (729)
+ ..-.|+....+.-|. -.-+.. +-++++-.-..++.--+.||-..
T Consensus 349 ~----------------~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------ 400 (840)
T KOG2003|consen 349 K----------------EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------ 400 (840)
T ss_pred C----------------CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------
Confidence 0 011122222111111 011111 11111111111222111122110
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-cCCHHHHHHH
Q 004814 398 NIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSC-K-MGNLSMAREF 475 (729)
Q Consensus 398 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~g~~~~A~~~ 475 (729)
-.+-+++.++.-....+..+.. ..-...+.+.|+++.|.+++.-..+.+-+.....-+.|-..+. + ..++..|..+
T Consensus 401 g~dwcle~lk~s~~~~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqy 478 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQY 478 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHH
Confidence 0122233332221111111111 1122346678888888888887776543322333333322222 2 2356666666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004814 476 FNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFI 555 (729)
Q Consensus 476 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 555 (729)
-+..+... .-+....+.-.......|++++|.+.+.+.+..+..-....|| +.-.+-..|++++|++.|-++...- .
T Consensus 479 ad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~ 555 (840)
T KOG2003|consen 479 ADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-L 555 (840)
T ss_pred HHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-H
Confidence 66555431 1122222222334456788888888888887653221222222 3344567888999998887765432 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 556 PDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALI 635 (729)
Q Consensus 556 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 635 (729)
.+..++..+.+.|....+...|.+++.+.... ++.|+.+...|.+.|-+.|+-.+|.+++-.--.. ++-|..+...|.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHH
Confidence 36677778888888888999999998877665 5778889999999999999999998887665554 555788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchh
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILIN-ENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYK 714 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~ 714 (729)
.-|....-+++|+.+|++..- +.|+..-|..++. ++.+.|++.+|+++|+... ...|....+..+|+.....-|.
T Consensus 634 ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h--rkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH--RKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCccchHHHHHHHHHhccccc
Confidence 888888888999999998865 6899999987765 4566899999999999987 4566666566665777777777
Q ss_pred hcHHHHHHHh
Q 004814 715 VHAVEYLESL 724 (729)
Q Consensus 715 ~~a~~~l~~l 724 (729)
.++.|+-.++
T Consensus 710 ~d~key~~kl 719 (840)
T KOG2003|consen 710 KDAKEYADKL 719 (840)
T ss_pred hhHHHHHHHH
Confidence 7776665554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-14 Score=150.20 Aligned_cols=570 Identities=14% Similarity=0.115 Sum_probs=369.9
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHH
Q 004814 98 NRIREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILD 177 (729)
Q Consensus 98 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 177 (729)
...+|+...|+.|+--+... -+.|..-|..+.......|++++|...+.++++.+|. +.+..-
T Consensus 183 yEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~---------------n~~~~~ 245 (895)
T KOG2076|consen 183 YEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS---------------NWELIY 245 (895)
T ss_pred HHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc---------------chHHHH
Confidence 34567888998877655432 2567799999999999999999999999999999887 456666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHH----HHHHHHHHCCChhHHHHHHHHHHhCC-CCCChhhHHHHHHH
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN----RIIKVLRDNGFSVKAREVYRMMGEFG-IKPSIVTYNTMLDS 252 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~ll~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~ 252 (729)
.-...|-+.|+...|...|.++....+..|..-+. .++..+...++.+.|++.++.....+ -..+...+++++..
T Consensus 246 ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael 325 (895)
T KOG2076|consen 246 ERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAEL 325 (895)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 77888999999999999999999976533333333 24556677788899999998887621 13456678999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHH----------------------HH----HHHHHHHhCCCHHHHHHHHHHHHh
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSPNGVT----------------------YN----VLITGFSRNGELEQARGLIRDMLK 306 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~----------------------~~----~li~~~~~~g~~~~A~~~~~~m~~ 306 (729)
+.+...++.|......+......+|..- |. -+.-++.+....+....+.....+
T Consensus 326 ~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~ 405 (895)
T KOG2076|consen 326 FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVE 405 (895)
T ss_pred HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHH
Confidence 9999999999999888876222222211 11 223344455556666666666666
Q ss_pred CC--CccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 004814 307 LG--LKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDII 384 (729)
Q Consensus 307 ~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 384 (729)
.. +.-++..|..+..+|...|++.+|+++|..+......-+...|--+..+|...|.+++|.+.|+..+...+ -+..
T Consensus 406 ~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D 484 (895)
T KOG2076|consen 406 DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLD 484 (895)
T ss_pred hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-Cchh
Confidence 65 44567789999999999999999999999999876666788999999999999999999999999998664 4566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--------CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC
Q 004814 385 SYNTLLYGYCRSGNIGEAFLLFDELRS--------RNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQG-----ILP 451 (729)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~l~~~m~~--------~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~ 451 (729)
.-..|...+.+.|+.++|.+.+..+.. ....|+........+.+.+.|+.++-..+-..|+... +.|
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~ 564 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFP 564 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 667788889999999999999998642 2344555555566778888999888777777665321 001
Q ss_pred -----------------CHHHHHHHHHHHHhcCCHHHHHHHHHH------HHHCCCCCCH--hhHHHHHHHHHhcCCHHH
Q 004814 452 -----------------DVITYTIMVNGSCKMGNLSMAREFFNE------MLRKGLQPDR--FAYTTQIAGELKLGDTSE 506 (729)
Q Consensus 452 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~g~~~~~--~~~~~li~~~~~~g~~~~ 506 (729)
.......++.+-.+.++.....+-... ....|+..+. ..+..++.++++.+++++
T Consensus 565 ~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qe 644 (895)
T KOG2076|consen 565 RNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQE 644 (895)
T ss_pred hHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHH
Confidence 111111222222222221111111100 0001111111 123344555666666666
Q ss_pred HHHHHHHHHHCCCC-CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC--CC-CHHHHHHH-------------
Q 004814 507 AYRLQEEMLAKGFP-PDLI----TYNVLVHGLCKLGSLEEANELLRKMVGD-GF--IP-DHITYTSI------------- 564 (729)
Q Consensus 507 A~~l~~~~~~~~~~-~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~--~p-~~~~~~~l------------- 564 (729)
|..+...+.....- .+.. .-...+.+.+..+++..|...++.|+.. +. .| -...|+..
T Consensus 645 Al~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~ 724 (895)
T KOG2076|consen 645 ALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCY 724 (895)
T ss_pred HHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655544211 1111 1223344445556666666666655543 00 00 11122211
Q ss_pred ----------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHH----------cCCHHH
Q 004814 565 ----------------------IHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYT-VLIHAHAA----------RGRLEL 611 (729)
Q Consensus 565 ----------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~----------~g~~~~ 611 (729)
.+.....+.+..|+..+-.+.... ||....+ .++-++.. +-..-+
T Consensus 725 ~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~--pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~q 802 (895)
T KOG2076|consen 725 LRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN--PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQ 802 (895)
T ss_pred HHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 122344566778888777766653 5533333 33333321 122445
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHhcC
Q 004814 612 AFMYFSEMQVKGIR-PNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN-------------KYTYTILINENCNAG 677 (729)
Q Consensus 612 A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~l~~~~~~~g 677 (729)
+..++.+..+.... -....+..++.+|-..|-+.-|..+|++..+.. +++ ...|| |.-.|..+|
T Consensus 803 G~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~-p~~~~~~~~d~~dLrkeAA~N-L~LIY~~SG 880 (895)
T KOG2076|consen 803 GFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS-PKDVTDPKEDNYDLRKEAAYN-LHLIYKKSG 880 (895)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC-ccccccccCCcccHHHHHHhh-hhhhhccCC
Confidence 66677666654221 145567788999999999999999999998742 111 12343 455789999
Q ss_pred CHHHHHHHHHHH
Q 004814 678 NWQEALRLYKEM 689 (729)
Q Consensus 678 ~~~~A~~~~~~m 689 (729)
+..-|.+++++-
T Consensus 881 n~~lArqil~ky 892 (895)
T KOG2076|consen 881 NMQLARQILEKY 892 (895)
T ss_pred cHHHHHHHHHhh
Confidence 999999998763
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-15 Score=142.85 Aligned_cols=331 Identities=19% Similarity=0.272 Sum_probs=237.2
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH--HHHCCChh-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKV--LRDNGFSV-KAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ 260 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--l~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (729)
...|.+.++.-+|++|...|...+...-..++.. |....++- .-++.|-.|.+.| ..+..+| +.|.+.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVA 196 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHH
Confidence 3578899999999999999887777665555543 33333333 2355666666655 3444455 345554
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 261 EALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMV 340 (729)
Q Consensus 261 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (729)
+ ++-+.. +-...+|.++|.++|+.-..+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|.
T Consensus 197 d---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMi 265 (625)
T KOG4422|consen 197 D---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMI 265 (625)
T ss_pred H---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHH
Confidence 4 333322 22567889999999999999999999999888777888999999987654322 278889999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH-HHHHHHHHh----h
Q 004814 341 TRGVAPTLATYNILIYGLCKWGRVSDA----RHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGE-AFLLFDELR----S 411 (729)
Q Consensus 341 ~~g~~p~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~----~ 411 (729)
...+.||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++. .
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 988999999999999999999987654 5677888888999999999999999998887644 444444332 2
Q ss_pred CCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 412 RNLVP----TVVTYNTLIDGLCRYGDLEVAQQLKENMINQG----ILPD---VITYTIMVNGSCKMGNLSMAREFFNEML 480 (729)
Q Consensus 412 ~~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (729)
+.+.| |...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22333 44566777888888889999988877665321 2222 2345667778888889999999999998
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 481 RKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLC 534 (729)
Q Consensus 481 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~ 534 (729)
-.-.-|+..+...++++..-.|.++-.-+++.++...|...+......++..++
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 887778888888888888888888888888888877764444333333333333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-13 Score=136.03 Aligned_cols=547 Identities=12% Similarity=0.070 Sum_probs=342.5
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHH
Q 004814 103 KPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLI 182 (729)
Q Consensus 103 ~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 182 (729)
.|+.|-.+...+.+. .++++..|......=.. ...=..++.++++.-|. +..+|-..+
T Consensus 330 p~d~aK~vvA~Avr~--~P~Sv~lW~kA~dLE~~---~~~K~RVlRKALe~iP~---------------sv~LWKaAV-- 387 (913)
T KOG0495|consen 330 PPDVAKTVVANAVRF--LPTSVRLWLKAADLESD---TKNKKRVLRKALEHIPR---------------SVRLWKAAV-- 387 (913)
T ss_pred ChHHHHHHHHHHHHh--CCCChhhhhhHHhhhhH---HHHHHHHHHHHHHhCCc---------------hHHHHHHHH--
Confidence 466777777666543 25677666655543322 12224566777776665 233333322
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004814 183 YTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEA 262 (729)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (729)
.....++|.-++.++.+.-+. +. -|..+|.+..-|+.|.++++...+. ++.+...|.+-...--.+|+.+..
T Consensus 388 --elE~~~darilL~rAveccp~-s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 388 --ELEEPEDARILLERAVECCPQ-SM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred --hccChHHHHHHHHHHHHhccc-hH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHH
Confidence 223344566666666664222 22 2334455555667777777766553 455666666666666666777766
Q ss_pred HHHHHHH----HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc--ChhhHHHHHHHHHhCCCHHHHHHHH
Q 004814 263 LELLWEM----QGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV--SAHSYNPIICGYSEKGLLVEALNLE 336 (729)
Q Consensus 263 ~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 336 (729)
.+++.+- ...|+..+...|..=...+-..|..--+..+....+..|+.- -..+|+.-...|.+.+.++-|..+|
T Consensus 460 ~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 460 EKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 6665543 345666666667666666767777777777766666655432 2356666777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 004814 337 EEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVP 416 (729)
Q Consensus 337 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 416 (729)
...++- .+.+...|...+..--..|..++-..+|.+.+..-+ .....|......+-..|+...|..++.+.-+.+..
T Consensus 540 a~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 540 AHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred HHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 776664 223555666666665566777777777777766543 34455555566666677777777777776665422
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHH
Q 004814 417 TVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD-RFAYTTQI 495 (729)
Q Consensus 417 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li 495 (729)
+...|...+.......+++.|..+|.+.... .|+..+|..-+...--.++.++|++++++.++. -|+ ...|..+.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLG 692 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHh
Confidence 5566666666667777777777777776653 455566665555555667777777777777765 333 34555556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 496 AGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLR 575 (729)
Q Consensus 496 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (729)
+.+.+.++++.|...|..-.+. +|..+..|-.+...--+.|++-+|..++++....++. +...|-..|..-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHH
Confidence 6677777777777776655544 3555666766766666777777777777777766543 6667777777777777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 576 RGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 576 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
.|..++.++++. ++.+...|..-|....+.++-..+...+++. .-|+.....+...+....++++|.+-|.+.+
T Consensus 771 ~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 771 QAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777665 3556666766666666555544444333332 3366666677777777777788888888777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 656 EEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 656 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
+.+ +.+-.+|..+...+.+.|.-++-.+++++.. ...|.
T Consensus 845 k~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~--~~EP~ 883 (913)
T KOG0495|consen 845 KKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE--TAEPT 883 (913)
T ss_pred ccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHh--ccCCC
Confidence 753 3334567777777777777777777777776 44453
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-13 Score=132.92 Aligned_cols=449 Identities=15% Similarity=0.165 Sum_probs=261.2
Q ss_pred hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCCHHH-HHHHHHHHHhCCCCCCHHHHHHH
Q 004814 208 VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK--EGEMQE-ALELLWEMQGRGCSPNGVTYNVL 284 (729)
Q Consensus 208 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~-A~~~~~~m~~~~~~p~~~~~~~l 284 (729)
+.+-|.++. +..+|.+.++.-+|+.|...|++.+...-..|...-|- +.++-- -.+.|-.|...|-. ...+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 334455554 45667788888888888888877777666666554442 222221 13344445444322 33333
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 285 ITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRV 364 (729)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 364 (729)
+.|++.+ ++-+. .+.+..++..+|.++|+-...+.|.+++++......+.+..++|.+|.+-.-
T Consensus 191 -----K~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred -----ccccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----
Confidence 2333332 22222 2346677888888888888888888888887776666677777777765332
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH----HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH-HHH
Q 004814 365 SDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGE----AFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEV-AQQ 439 (729)
Q Consensus 365 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-A~~ 439 (729)
....+++.+|......||..|+|+++....+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 2226777778777777888888888888888886654 45677778888888888888888887777776643 444
Q ss_pred HHHHHHHC----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HhhHHHHHHHHHhcCCH
Q 004814 440 LKENMINQ----GI----LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKG----LQPD---RFAYTTQIAGELKLGDT 504 (729)
Q Consensus 440 ~~~~~~~~----~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~ 504 (729)
++.++... .+ +.|...+...+..|.+..+.+-|.++...+.... +.|+ ..-|..+....++....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 44444431 11 2244556666667777777777766655444321 1111 12244455556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 505 SEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNM 584 (729)
Q Consensus 505 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (729)
+.-...++.|+-.-+-|+..+...++++..-.|.++-.-+++..++..|..-+.... ++++..+
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L 478 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLL 478 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHH
Confidence 666666666666555566666666666666666666666666666555432222111 1222222
Q ss_pred HHCCCCCChhhHHHHHHHHHHc-CCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---
Q 004814 585 LRKGLSPTLVTYTVLIHAHAAR-GRLELAFM-YFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGI--- 659 (729)
Q Consensus 585 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~-~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--- 659 (729)
......|+...-.-+-....+. -++.++.+ .-.++... .......+.++-.+.+.|+.++|.+++.-..+++-
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 2222222222111111111110 11222221 12233333 33455667777788999999999999988866432
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004814 660 -LPNKYTYTILINENCNAGNWQEALRLYKEMLDREIE 695 (729)
Q Consensus 660 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 695 (729)
.|......-+.+.-...+....|...++-|...+..
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 222333446667777888899999999998755544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-13 Score=131.92 Aligned_cols=453 Identities=14% Similarity=0.122 Sum_probs=344.1
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
-+...|..-+.-=-..+.+..|.+++++++..+-. +..+|..-+.+=.++..+..|..++++++.
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r---------------~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYR---------------NITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc---------------cchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 45566666666666678888999999999887643 566788888888999999999999999998
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTY 281 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 281 (729)
.-+..|. .|...+.+=-..|++..|.++|++-.+. .|+..+|++.|+.-.+....+.|..+|++..- +.|++.+|
T Consensus 136 ~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~w 210 (677)
T KOG1915|consen 136 ILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNW 210 (677)
T ss_pred hcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHH
Confidence 6544343 3445555666789999999999998876 79999999999999999999999999999887 47999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC-C-CccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004814 282 NVLITGFSRNGELEQARGLIRDMLKL-G-LKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPT-LATYNILIYGL 358 (729)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~ 358 (729)
.-....=-+.|....|+.+|..+++. | -..+...+.+....-.++..++.|.-+|+-.++.=+... ...|..+...-
T Consensus 211 ikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 211 IKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 99888888999999999999998864 2 112334555555556677888889889888887522211 34555555554
Q ss_pred HhcCCH---HHHH-----HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-------hhHHH
Q 004814 359 CKWGRV---SDAR-----HRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV-------VTYNT 423 (729)
Q Consensus 359 ~~~g~~---~~A~-----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-------~~~~~ 423 (729)
-+.|+. ++++ --++.++..++ -|-.+|-..++.-...|+.+...++|++.... ++|-. ..|.-
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLW 368 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHH
Confidence 555653 3333 23455666665 78888989999888999999999999998875 45522 12211
Q ss_pred H---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004814 424 L---IDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNG----SCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIA 496 (729)
Q Consensus 424 l---l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 496 (729)
+ +-.-....+.+.+.++++..++. ++....|+..+--. ..++.++..|.+++...+ |..|...++...|.
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHH
Confidence 1 11223568899999999999885 45555565554433 346788999999998877 45888999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHH
Q 004814 497 GELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGF-IPDHITYTSIIHASLEMGDLR 575 (729)
Q Consensus 497 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~ 575 (729)
.-.+.++++.+..+++..++-+ |.+..+|......-...|+.+.|..+|.-++.... .-....|.+.|+--...|.++
T Consensus 446 lElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 9999999999999999999986 77888999888888889999999999998887531 122346777777778899999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004814 576 RGRDLFNNMLRKGLSPTLVTYTVLIHA 602 (729)
Q Consensus 576 ~A~~~~~~~~~~~~~~~~~~~~~l~~~ 602 (729)
.|..+++.++.. .+...+|..+..-
T Consensus 525 kaR~LYerlL~r--t~h~kvWisFA~f 549 (677)
T KOG1915|consen 525 KARALYERLLDR--TQHVKVWISFAKF 549 (677)
T ss_pred HHHHHHHHHHHh--cccchHHHhHHHH
Confidence 999999999986 3455567666543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-12 Score=125.13 Aligned_cols=438 Identities=12% Similarity=0.093 Sum_probs=273.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCh-hhHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSI-VTYNTML 250 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li 250 (729)
+...|..-++-=..+++++.|..+|++++.... .+...|...+.+=.+...+..|..++++.+..- |-+ ..|-..+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHH
Confidence 455555555556667788889999999988663 377778888888888889999999999888753 332 2455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHH
Q 004814 251 DSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLV 330 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 330 (729)
.+--..|++..|.++|++..+. .|+...|++.|..=.+.+..+.|+.++++.+-. .|++.+|.-....-.+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 5556678999999999998874 889999999999888889999999999988764 588888888888888899999
Q ss_pred HHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHH--
Q 004814 331 EALNLEEEMVTR-GV-APTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPD-IISYNTLLYGYCRSGNIGEAFLL-- 405 (729)
Q Consensus 331 ~A~~~~~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l-- 405 (729)
-|..+|+...+. |- .-+...+.++...-.++..++.|.-+|.-.+..-+... ...|..+...--+-|+.....+.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999988887763 11 11233455555555566777888888877776533221 23344444433344543333222
Q ss_pred ------HHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHH--------HHhcCCH
Q 004814 406 ------FDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDV--ITYTIMVNG--------SCKMGNL 469 (729)
Q Consensus 406 ------~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~g~~ 469 (729)
|+.+.+.+ +-|-.+|-..++.-...|+.+...+++++++.. ++|-. ..|...|-. -....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 22333332 335556666666666677777777777777765 33321 111111111 1234566
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 470 SMAREFFNEMLRKGLQPDRFAYTTQI----AGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANEL 545 (729)
Q Consensus 470 ~~A~~~~~~~~~~g~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 545 (729)
+.+.++++..++. ++....|+..+- ....++.+...|.+++...+. ..|...++...|..-.+.++++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 6667777666663 222334443332 233355666666666655543 355666666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 546 LRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKG-LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 546 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
+++.++-++. +..+|......-...|+.+.|..+|+-+++.. +......|-..|+--...|.++.|..+++++++.
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 6666665432 45555555555556666666666666665531 1111233444444444566666666666666654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-13 Score=133.08 Aligned_cols=457 Identities=13% Similarity=0.058 Sum_probs=282.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHhCCCccChh----hHHHHHHHHH
Q 004814 250 LDSFCKEGEMQEALELLWEMQGRGCSPNGVTY-NVLITGFSRNGELEQARGLIRDMLKLGLKVSAH----SYNPIICGYS 324 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~ 324 (729)
.+-|.-+....+|+..|+-+.+...-|+.... ..+.+.+.+...+.+|.+.++..+..-+..+.. ..+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 34455556677777777777766555554432 234566777777777877777776653222222 3344444566
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH--------HHHHHHHHHc
Q 004814 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISY--------NTLLYGYCRS 396 (729)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~li~~~~~~ 396 (729)
+.|++++|+..|+...+. .|+..+-..|+-++...|+-++..+.|..|+..-..||..-| ..|+.--.+.
T Consensus 288 q~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred ecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 777777777777776664 356555444555555667777777777777765444443322 1122111111
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHH
Q 004814 397 GNIGEAFLLFDELRSRNLVPTVVTY----NTLIDGLCRYGDLEVAQQLKENMINQG-I-LPDVITYTIMVNGSCKMGNLS 470 (729)
Q Consensus 397 g~~~~A~~l~~~m~~~~~~~~~~~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~ 470 (729)
+.++.|.+.+ ..+..-+ ..+|.- .-.-++....++.-+.++.. . +.-...--.-..-+.+.|+++
T Consensus 366 -------d~lk~~ek~~-ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 366 -------DHLKNMEKEN-KADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred -------HHHHHHHHhh-hhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 1112222111 0000000 000000 00001111111111111100 0 000000011233578899999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 471 MAREFFNEMLRKGLQPDRFAYTTQIAGELK--LGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRK 548 (729)
Q Consensus 471 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 548 (729)
.|+++++-..++.-+.-....+.+-..+.- -.++..|...-+..+..+ .-+......-...-...|++++|.+.+++
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 999999988876433223333333322222 345666766666555432 22333322223334457899999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 549 MVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV 628 (729)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 628 (729)
.+.....- ...+-.+.-.+...|++++|+++|-++... +..+..+...+...|.-..+..+|++++.+.... ++.|+
T Consensus 516 al~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 516 ALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 98753221 222333444577899999999999877543 2457778888899999999999999999998876 66688
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQ 708 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~ 708 (729)
.+...|.+.|-+.|+-.+|.+.+-+--.. ++-|..+...|..-|....-+++|+.+|+++. =++|+...|..+++.|
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHH
Confidence 89999999999999999999987665544 57788899999988999999999999999987 7899999999999999
Q ss_pred hccchhhc-HHHHHHHh
Q 004814 709 LDKDYKVH-AVEYLESL 724 (729)
Q Consensus 709 l~~~g~~~-a~~~l~~l 724 (729)
+++.|.++ |.+.++.+
T Consensus 670 ~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHhcccHHHHHHHHHHH
Confidence 99999999 99887654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-12 Score=127.65 Aligned_cols=510 Identities=13% Similarity=0.038 Sum_probs=319.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
..-+..+++-+..+.++.-|.-+-+++...+..|+ .-..++.++.-.|++..|..+...-.-. ..|..+.......
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHH
Confidence 34444555566677788888888888877664443 3445777888888888887776654322 3567777777888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHH
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 332 (729)
+.+..++++|..++.... +..+...|-.-= + ...-..+.+. ++.. .......+-.-...|......++|
T Consensus 92 l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~-~-~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGH---VETNPFSYYEKD-A-ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred HHHHHHHHHHHHHhcccc---hhhcchhhcchh-h-hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHH
Confidence 888888888888876331 111111110000 0 0000001111 0000 000111111122334445556666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 333 LNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNV----IPDIISYNTLLYGYCRSGNIGEAFLLFDE 408 (729)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 408 (729)
...|.+.... |+..+..+...-. . .+-.+.+.++.+..... .-+......+.....-...-++....-.+
T Consensus 161 r~~Y~~Al~~----D~~c~Ea~~~lvs-~-~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~ 234 (611)
T KOG1173|consen 161 RDKYKEALLA----DAKCFEAFEKLVS-A-HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNED 234 (611)
T ss_pred HHHHHHHHhc----chhhHHHHHHHHH-H-HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCch
Confidence 6666666554 3333332221111 0 11112222222221110 01111111111111000000000000000
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 409 LRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR 488 (729)
Q Consensus 409 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 488 (729)
..-.+..-+........+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.-+ ..+
T Consensus 235 ~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a 312 (611)
T KOG1173|consen 235 ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKA 312 (611)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCC
Confidence 1111223345555566667778889999999999988875 56667777777788888888877777777777632 356
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 489 FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHAS 568 (729)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (729)
.+|-++.--|...|+.++|.+.|.+....+ +.-...|-.+...|+-.|..|+|...+..+-+.-.. ...-+--+.--|
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey 390 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEY 390 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHH
Confidence 788888888888899999999998877653 334567888899999999999999988877664211 111222344457
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcC
Q 004814 569 LEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK--GIR----PNVITYNALINGLCRLR 642 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~----p~~~~~~~l~~~~~~~g 642 (729)
.+.++.+.|.++|.+..... |.|+..++-+.-.....+.+.+|..+|+..+.. .+. --..+++.|+.+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 88899999999999988774 778888998888888889999999999988732 011 13456889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcc
Q 004814 643 RIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDK 711 (729)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~ 711 (729)
++++|+..+++.+... +.+..+|.+++-.|...|+++.|++.|.+.+ .++||......+|..++..
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 9999999999999873 7788899999999999999999999999999 9999998888886666654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-11 Score=120.49 Aligned_cols=362 Identities=15% Similarity=0.059 Sum_probs=242.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYN 422 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~ 422 (729)
+...|...+-.....+.+.|....|+..|...+..-+ -....|..|..... +.+.+. .... +.+.|.....
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-~~W~AWleL~~lit---~~e~~~----~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-WFWSAWLELSELIT---DIEILS----ILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-cchHHHHHHHHhhc---hHHHHH----HHHh-cCcccchHHH
Confidence 3444665555556667778888888888888776433 34444444443322 222221 1111 1222221111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHH
Q 004814 423 --TLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQ--PDRFAYTTQIAGE 498 (729)
Q Consensus 423 --~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~ 498 (729)
.+..++-...+.+++.+-.......|++.+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++ |
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Y 307 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--Y 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--H
Confidence 234455666677888888888888887766666666666677788889999999888886211 1345555554 2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 499 LKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGR 578 (729)
Q Consensus 499 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 578 (729)
.+..+.. +..+.+-.-.-.+-.+.|...+.+-|+-.++.++|...|++.++.++. ....|+.+.+-|....+...|.
T Consensus 308 v~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 308 VKNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 2222211 122221111111334567777778888888888999999988887533 5567888888888888899999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004814 579 DLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 658 (729)
+-++.+++.+ |.|-..|-.|+++|.-.+...-|+-+|+++.+.. +-|...|.+|+.+|.+.++.++|++.|......|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9998888875 6788888889999998888888999998888852 2367788899999999999999999998888876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHhhhccchhhc-HHHHH
Q 004814 659 ILPNKYTYTILINENCNAGNWQEALRLYKEMLDR----E-IEPDYCTHSALLLKQLDKDYKVH-AVEYL 721 (729)
Q Consensus 659 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~-~~pd~~~~~~ll~~~l~~~g~~~-a~~~l 721 (729)
..+...+..|++.|.+.++.++|.+.|++-++. | +.|...-....|+....+.++.+ |-.+.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 445678888888888899999998888887742 2 33434445555566777777776 54433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-09 Score=108.66 Aligned_cols=525 Identities=13% Similarity=0.149 Sum_probs=343.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 004814 126 VFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL 205 (729)
Q Consensus 126 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 205 (729)
.|-.-+..+.++|+.-.-+..|++++..-|- .-..++|+..+.-....|..+-++.++++.++..
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-------------tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-- 168 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPV-------------TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-- 168 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCch-------------HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--
Confidence 3444444555566666666666665543221 1135688888888888899999999999999853
Q ss_pred CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCC
Q 004814 206 PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG------IKPSIVTYNTMLDSFCKEGEMQ---EALELLWEMQGRGCSP 276 (729)
Q Consensus 206 ~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p 276 (729)
+..-+-.+..+++.+++++|.+.+...+... .+.+-..|..+-+...+.-+.- ....+++.+..+ -+
T Consensus 169 --P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ft 244 (835)
T KOG2047|consen 169 --PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FT 244 (835)
T ss_pred --HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--Cc
Confidence 3345677888999999999999998876431 1455566777666666543322 233455555544 33
Q ss_pred C--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCC----------------------HHHH
Q 004814 277 N--GVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGL----------------------LVEA 332 (729)
Q Consensus 277 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~A 332 (729)
| ...|.+|..-|.+.|.+++|..+|++.++. ..++.-|..+.+.|+.-.. ++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 4 347899999999999999999999998875 2355566777777653221 1122
Q ss_pred HHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC----CCHhHHHHHHHHHHHc
Q 004814 333 LNLEEEMVTRGV-----------APTLATYNILIYGLCKWGRVSDARHRFFEMLRKN-VI----PDIISYNTLLYGYCRS 396 (729)
Q Consensus 333 ~~~~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~----~~~~~~~~li~~~~~~ 396 (729)
+.-|+.+..+++ .-++..|..-+. +..|+..+-...+.+.+..- +. .-...|..+.+.|-..
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc
Confidence 233333333211 112333333222 23566777778888877641 11 1134578889999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------CCHHHH
Q 004814 397 GNIGEAFLLFDELRSRNLVPT---VVTYNTLIDGLCRYGDLEVAQQLKENMINQGIL-----------------PDVITY 456 (729)
Q Consensus 397 g~~~~A~~l~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~ 456 (729)
|+++.|..+|++..+-+.+-- ..+|.....+-.+..+++.|.++.+......-. .+...|
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 999999999999877653322 234555556666778889999988877642111 134566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 004814 457 TIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL-ITYNVLVHGLCK 535 (729)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~li~~~~~ 535 (729)
...++..-..|-++....+|+++++..+. ++.........+....-++++.++++.-+..--.|+. ..|+..+.-+.+
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 77777777788999999999999987554 4444444444555667788999988876655334443 467776665544
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCC
Q 004814 536 ---LGSLEEANELLRKMVGDGFIPDHITYTSI--IHASLEMGDLRRGRDLFNNMLRKGLSPT--LVTYTVLIHAHAARGR 608 (729)
Q Consensus 536 ---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 608 (729)
...++.|..+|++.++ |.+|...-+-.| ...--+.|-...|+.+++++... +++. ...||..|.--...=-
T Consensus 560 rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC
Confidence 3468999999999998 555554322222 22234568899999999997765 2332 4477777765444434
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 004814 609 LELAFMYFSEMQVKGIRPNVIT---YNALINGLCRLRRIDQAYGLFIDMEEE-GILPNKYTYTILINENCNAGN 678 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~ 678 (729)
+.....+|+++++. -||... .-...+.-++.|.++.|..++.-..+. +...+...|.+.=.--.+.|+
T Consensus 638 v~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 638 VPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred CcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 55667788888875 455443 334455678899999999999887764 223355678888777788998
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-12 Score=126.85 Aligned_cols=222 Identities=15% Similarity=0.118 Sum_probs=164.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 464 CKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEAN 543 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 543 (729)
.-.|+.-.|.+-|+..++....++. .|..+...|.+..+.++....|+...+.+ |.++.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3467788888888888876443222 26666677888888888888888888875 667777777777777788899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004814 544 ELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKG 623 (729)
Q Consensus 544 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 623 (729)
.=|++.++..+. +...|..+.-+..+.+.+++++..|++..++ +|.-+..|+.....+..+++++.|.+.|+..++..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999888876432 5556666666677888899999999988876 46667888888889999999999999999888752
Q ss_pred CC-----CCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 624 IR-----PNVI--TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 624 ~~-----p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.. .+.. +--.++.. .-.+++..|..+++++.+.+ +-....|.+|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 1111 11222222 23478889999999988854 33455788888888999999999999998763
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-11 Score=115.71 Aligned_cols=257 Identities=12% Similarity=0.053 Sum_probs=130.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCC
Q 004814 356 YGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLV--PTVVTYNTLIDGLCRYGD 433 (729)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--~~~~~~~~ll~~~~~~g~ 433 (729)
.++....+.+++.+-.+.....|...+...-+....+.-...++++|+.+|+++.+...- -|..+|+.++-.--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 444444555666666666666555333333333344444556666666666666554210 134455544432211111
Q ss_pred HH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 004814 434 LE-VAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQE 512 (729)
Q Consensus 434 ~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 512 (729)
+. .|..++ +.+ +--+.|...+.+.|+-.++.++|...|++.++.+.. ....|+.+..-|....+...|+..++
T Consensus 315 Ls~LA~~v~----~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVS----NID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHH----Hhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 111111 110 222345555555566666666666666666655322 23444555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 513 EMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT 592 (729)
Q Consensus 513 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 592 (729)
..++-+ |.|-..|-.+.++|.-.+.+.=|+-.|++.....+ .|...|.+|..+|.+.++.++|.+.|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 555543 44555555555555555555555555555555432 255555555555555555555555555555544 233
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
...+..|.+.|-+.++..+|...|++-++
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555555555555555555555555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-12 Score=131.67 Aligned_cols=251 Identities=12% Similarity=0.023 Sum_probs=148.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 004814 429 CRYGDLEVAQQLKENMINQGILPDVITY--TIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSE 506 (729)
Q Consensus 429 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 506 (729)
.+.|+++.|.+.+.++.+. .|+.... ......+...|+++.|...++++.+..+. ++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555443 2222211 12234455555555555555555554322 34444455555555555555
Q ss_pred HHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 507 AYRLQEEMLAKGFPPDL-------ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRD 579 (729)
Q Consensus 507 A~~l~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 579 (729)
|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555554322111 12222232223333445555555554332 23466677777777888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004814 580 LFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGI 659 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 659 (729)
++++..+. +++.... ++.+....++.+++++..++..+.. +-|+..+..++..|.+.|++++|.+.|+++.+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 88777764 4554222 2334445578888888888877763 235566777888888888888888888888773
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 660 LPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 660 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.|+...+..+..++.+.|+.++|.++|++.+
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777777788888888888888888888776
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-12 Score=133.30 Aligned_cols=290 Identities=12% Similarity=0.019 Sum_probs=166.2
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 395 RSGNIGEAFLLFDELRSRNLVPT-VVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAR 473 (729)
Q Consensus 395 ~~g~~~~A~~l~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (729)
..|+++.|.+.+.+..+.. |+ ...+-....+....|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3556666666655544432 22 22223334445555666666666666554321111222333355555566666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHH
Q 004814 474 EFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVL---VHGLCKLGSLEEANELLRKMV 550 (729)
Q Consensus 474 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~ 550 (729)
..++.+.+..+. +......+...+.+.|++++|.+++..+.+.+..+.......- ..+....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666655322 3445555556666666666666666666655432222111111 111122222233334444444
Q ss_pred hCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004814 551 GDGFI---PDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVT---YTVLIHAHAARGRLELAFMYFSEMQVKGI 624 (729)
Q Consensus 551 ~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 624 (729)
+..+. .+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.+++..+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 43221 266777777788888888888888888887763 33321 1122222334567788888888877752
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 625 RPNV--ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 625 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+-|+ ....++++.+.+.|++++|.+.|++.......|+...+..+...+.+.|+.++|.++|++.+
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2244 55668888888888898898888854433357888888888888888888888888888865
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-12 Score=133.80 Aligned_cols=290 Identities=12% Similarity=0.048 Sum_probs=172.0
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSI--VTYNTMLDSFCKEGEMQE 261 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 261 (729)
...|+++.|.+.+.+..+..+. ....+-....+..+.|+++.|.+.+.+..+.. |+. .........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 3456667777776666655422 12223334455666677777777777665542 332 233334566666777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHH----HHHHHHHhCCCHHHHHHHHH
Q 004814 262 ALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYN----PIICGYSEKGLLVEALNLEE 337 (729)
Q Consensus 262 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~ 337 (729)
|...++++.+.. +-+...+..+...+.+.|++++|.+++..+.+.+.. +...+. .........+..+++.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777776653 224455666667777777777777777777766533 222221 11111122233333334444
Q ss_pred HHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004814 338 EMVTRGVA---PTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIIS---YNTLLYGYCRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 338 ~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~ 411 (729)
.+.+..+. .+...+..++..+...|+.++|.+++++..+..+ |... ...........++.+++.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 44443221 2667777777778888888888888888777553 3221 11122222345667777777777666
Q ss_pred CCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 412 RNLVPTV--VTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLR 481 (729)
Q Consensus 412 ~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (729)
.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 2233 455677778888888888888888533333367777777888888888888888888887654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-12 Score=133.82 Aligned_cols=252 Identities=11% Similarity=0.088 Sum_probs=155.7
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 394 CRSGNIGEAFLLFDELRSRNLVPTVVTYN--TLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSM 471 (729)
Q Consensus 394 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (729)
.+.|+++.|.+.+.++.+.. |+...+. .....+...|+++.|...++++.+.. +.+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 45555555555555554432 2222111 22344455555555555555555543 3344555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 472 AREFFNEMLRKGLQPDRF-------AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANE 544 (729)
Q Consensus 472 A~~~~~~~~~~g~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 544 (729)
|.+++..+.+.+..++.. ++..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 555555555544332111 1122222222333444445555544332 35577777888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004814 545 LLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGI 624 (729)
Q Consensus 545 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 624 (729)
++++..+. .|+.... ++.+....++.+++.+..+...+.. +.|...+..+...+.+.|++++|.+.|+++.+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 88888874 3444222 2333445588888888888888764 556777888888888888888888888888874
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 625 RPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 625 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
.|+...+..+..++.+.|+.++|.+++++...
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 68888888888888888888888888887754
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-10 Score=117.37 Aligned_cols=453 Identities=16% Similarity=0.139 Sum_probs=304.9
Q ss_pred HhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 004814 135 IESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRI 214 (729)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (729)
...+.++....+.+.+++..|.- .......+-.+...|+-++|....+..++..+. +.+.|..+
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eH---------------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~ 81 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEH---------------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVL 81 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCcc---------------chhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHH
Confidence 45677888888888888876652 223333444456788999999999998887665 77889888
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 004814 215 IKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGEL 294 (729)
Q Consensus 215 l~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 294 (729)
.-.+....++++|++.|+.+...+ +.|...|.-+.-...+.|+++.....-.+..+. .+.....|...+.++.-.|+.
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999987 778888888877778888998888777777665 233566788889999999999
Q ss_pred HHHHHHHHHHHhCC-CccChhhHHHHH------HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 295 EQARGLIRDMLKLG-LKVSAHSYNPII------CGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDA 367 (729)
Q Consensus 295 ~~A~~~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 367 (729)
..|..++++..+.. -.|+...+.... ....+.|.+++|++.+..-... +.-....-..-...+.+.+++++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999999998764 245555554433 3445778888898887765543 221222334456778899999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHH-HHHcCCHHHHH-HHHHHHhhCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 004814 368 RHRFFEMLRKNVIPDIISYNTLLYG-YCRSGNIGEAF-LLFDELRSRN---LVPTVVTYNTLIDGLCRYGDLEVAQQLKE 442 (729)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~-~l~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 442 (729)
..++..++..+ ||...|+..... +.+-.+.-+++ .+|....+.- -.|-....+ ......-.+..-.++.
T Consensus 239 ~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls----vl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 239 VKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS----VLNGEELKEIVDKYLR 312 (700)
T ss_pred HHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH----HhCcchhHHHHHHHHH
Confidence 99999999977 677766655544 43444444454 6666554431 111111111 1111222345556677
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHh--hHHHHHHHHHhcCCHHH
Q 004814 443 NMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLR----KG----------LQPDRF--AYTTQIAGELKLGDTSE 506 (729)
Q Consensus 443 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g----------~~~~~~--~~~~li~~~~~~g~~~~ 506 (729)
.+.+.|+++ ++..+...|-.-...+-..++.-.+.. .| -.|... ++..++..+-+.|+++.
T Consensus 313 ~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 313 PLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 777887654 333333333222222211111111111 11 133433 34456678889999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 507 AYRLQEEMLAKGFPPD-LITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNML 585 (729)
Q Consensus 507 A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (729)
|...++..+.+ .|. +..|..-.+.+...|.+++|..++++..+.. .+|...-..-..-..+..+.++|.++.....
T Consensus 390 A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 390 ALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 99999998876 444 5567677788999999999999999998875 4566655567777788999999999998888
Q ss_pred HCCCCCChh--------hHHHH--HHHHHHcCCHHHHHHHHHHHH
Q 004814 586 RKGLSPTLV--------TYTVL--IHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 586 ~~~~~~~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~~~ 620 (729)
+.|. +.. +|-.+ +.+|.++|++.+|++-|..+.
T Consensus 467 r~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 467 REGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 7763 222 23222 356778888888877665544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-15 Score=147.95 Aligned_cols=258 Identities=18% Similarity=0.163 Sum_probs=62.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 004814 425 IDGLCRYGDLEVAQQLKENMINQG-ILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGD 503 (729)
Q Consensus 425 l~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 503 (729)
...+.+.|++++|.++++...... .+.+...|..+.......++.+.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 344444455555555543332221 1223333333333444445555555555555443222 22233333333 34444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 504 TSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDG-FIPDHITYTSIIHASLEMGDLRRGRDLFN 582 (729)
Q Consensus 504 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (729)
+++|.++++...+. .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444443332 2233344444444455555555555555443321 12334444444455555555555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004814 583 NMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN 662 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (729)
+.++.. |.|....+.++..+...|+.+++.++++...+.. +.|+..+..++.+|...|+.++|+..+++..+.. +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 555442 2234444455555555555555444444444331 2233344455555555555555555555554432 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 663 KYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 663 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
+.....+++++...|+.++|.++++++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444455555555555555555554444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.2e-11 Score=116.55 Aligned_cols=356 Identities=13% Similarity=-0.018 Sum_probs=175.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD-VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 176 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
+-...+-|.++|++++|++.|.++++.. || +.-|.....+|...|++++..+...+.++.+ +.-+-.+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 3456677889999999999999999864 66 6778888999999999999999998888764 223446666677777
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CC--CccChhhHHHHHHHHHhCCCHH
Q 004814 255 KEGEMQEALELLWEMQGR-GCSPNGVTYNVLITGFSRNGELEQARGLIRDMLK-LG--LKVSAHSYNPIICGYSEKGLLV 330 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--~~~~~~~~~~li~~~~~~g~~~ 330 (729)
+.|++++|+.=.....-. |+. |..+--.+=+.+- ..|.....+-.+ .+ +-|+.....+....+...-
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~--- 265 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP--- 265 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc---
Confidence 788888876433222111 111 1111110001111 111222222222 22 1233322222222221100
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC---CCCC---C------HhHHHHHHHHHHHcC
Q 004814 331 EALNLEEEMVTRGVAPTLATYNILIYGLCK-WGRVSDARHRFFEMLRK---NVIP---D------IISYNTLLYGYCRSG 397 (729)
Q Consensus 331 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~~---~------~~~~~~li~~~~~~g 397 (729)
...+...+...|...-..+-..+.. ...+..|.+.+.+-... .... | ..+.......+.-.|
T Consensus 266 -----~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 266 -----KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred -----cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 0000000000000000000000000 01122332222221110 0000 1 111111122233355
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 398 NIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFN 477 (729)
Q Consensus 398 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (729)
+...|..-|+........++ ..|..+..+|....+.++..+.|++..+.+ +.++.+|..-...+.-.+++++|..-|+
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655432221 225555556666666666666666666654 3355555555555555666666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 478 EMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGD 552 (729)
Q Consensus 478 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 552 (729)
+.+..... +...|..+.-+..+.+.++++...|++..++ +|..+..|+.....+...++++.|.+.|+..++.
T Consensus 419 Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 419 KAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 66654211 2333444444445566666666666666554 4555666666666666666666666666665553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-08 Score=104.14 Aligned_cols=491 Identities=13% Similarity=0.118 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL-LPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+++|..-.+...++|++..-..+|++++..=+ .-....|...+......+-.+-+..+|++.++. ++..-+-.|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 44555555555566666666666666554321 123334555555555556566666666665543 2223444455
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhCCCHH---HHHHHHHHHHhCCCccChhhHHHHHHH
Q 004814 252 SFCKEGEMQEALELLWEMQGRG------CSPNGVTYNVLITGFSRNGELE---QARGLIRDMLKLGLKVSAHSYNPIICG 322 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~ 322 (729)
.+++.++.++|.+.+....... .+.+...|.-+-....+..+.- ....+++.++..=...--..|.+|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 5556666666665555543221 1223333444444333332211 112222222221111112345555555
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCCCHhHHHHHHHHHHHcCCHH
Q 004814 323 YSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEML--RKNVIPDIISYNTLLYGYCRSGNIG 400 (729)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~ 400 (729)
|.+.|.++.|.++|++.... ..++.-++.+.+.|.......-+..+= +. +.+-..+.. +++
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~-------------dl~ 320 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDV-------------DLE 320 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhh-------------hHH
Confidence 55555555555555555442 113333444444444322211111110 00 001101111 122
Q ss_pred HHHHHHHHHhhCC-----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHH
Q 004814 401 EAFLLFDELRSRN-----------LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILP------DVITYTIMVNGS 463 (729)
Q Consensus 401 ~A~~l~~~m~~~~-----------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~ 463 (729)
-.+.-|+.+.... -+-++..|..- .-+..|+..+-...+.++++. +.| -...|..+...|
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHH
Confidence 2223333332221 01122222222 223345666667777777654 122 234677777888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CC------CH
Q 004814 464 CKMGNLSMAREFFNEMLRKGLQPD---RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGF-----------PP------DL 523 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-----------~~------~~ 523 (729)
-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|+++++.....-- ++ +.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 888888888888888776533211 23444445555677778888887776644210 11 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHH
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTL-VTYTVLIHA 602 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~ 602 (729)
..|..+++..-..|-++....++++++...+. ++........-+-.+.-++++.+++++-+..-..|+. ..|+..+.-
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 34555566656667777777778777766543 3332222233344455566677776655544223332 355555544
Q ss_pred HHH---cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHh
Q 004814 603 HAA---RGRLELAFMYFSEMQVKGIRPNVI--TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNK--YTYTILINENCN 675 (729)
Q Consensus 603 ~~~---~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~ 675 (729)
+.+ ..+++.|..+|+++++ |.+|... .|......--+.|....|+.+++++... +++.. ..|+..|.--..
T Consensus 557 fi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae 634 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAE 634 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence 443 2356777777777776 4555432 2222222233456666677777665442 33322 244444432222
Q ss_pred cCCHHHHHHHHHHHH
Q 004814 676 AGNWQEALRLYKEML 690 (729)
Q Consensus 676 ~g~~~~A~~~~~~m~ 690 (729)
.=-....+.+|++++
T Consensus 635 ~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 635 IYGVPRTREIYEKAI 649 (835)
T ss_pred HhCCcccHHHHHHHH
Confidence 222233345555555
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.4e-15 Score=146.21 Aligned_cols=258 Identities=18% Similarity=0.160 Sum_probs=116.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 458 IMVNGSCKMGNLSMAREFFNEMLRKG-LQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKL 536 (729)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 536 (729)
.+...+.+.|++++|++++++..... ...+...+..+.......++.++|...++.+...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 56788899999999999997665553 23344555556667788999999999999998875 3356667777777 788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 004814 537 GSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK-GLSPTLVTYTVLIHAHAARGRLELAFMY 615 (729)
Q Consensus 537 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 615 (729)
+++++|.+++.+..+.. ++...+..++..+.+.++++++.++++.+... ..+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998877653 56677888889999999999999999998754 2356788899999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 616 FSEMQVKGIRP-NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREI 694 (729)
Q Consensus 616 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 694 (729)
++++.+. .| |....+.++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|+..+++.. ..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~--~~ 243 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL--KL 243 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH--HH
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc--cc
Confidence 9999996 45 57788899999999999999999999988763 6677788999999999999999999999998 67
Q ss_pred CCCHHHHHHHHHhhhccchhhc-HHHHHHHh
Q 004814 695 EPDYCTHSALLLKQLDKDYKVH-AVEYLESL 724 (729)
Q Consensus 695 ~pd~~~~~~ll~~~l~~~g~~~-a~~~l~~l 724 (729)
.|+.+.+...++++|...|+.+ |.++.++.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp STT-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 8877777777799999999999 88877654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-13 Score=137.10 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=178.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 398 NIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQG--ILPDVITYTIMVNGSCKMGNLSMAREF 475 (729)
Q Consensus 398 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (729)
+..+|+..|..+... +.-...+...+..+|...+++++|+++|+.+.+.. ...+...|.+.+-.+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777774443 23334555667777777777777777777776652 12355666666643321 222332
Q ss_pred H-HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004814 476 F-NEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGF 554 (729)
Q Consensus 476 ~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 554 (729)
+ +.+.+. -+-.+.+|.++..+|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 233332 12356677777777777777777777777777653 33566677666666667777777777777765421
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 555 IPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNAL 634 (729)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 634 (729)
. +-..|-.+.-.|.+.++++.|+-.|+++.+.+ |.+.+....++..+-+.|+.++|+++++++.....+ |+..--..
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 1 23344455666777777777777777777765 556666666777777777777777777777765332 44444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 635 INGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEP 696 (729)
Q Consensus 635 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 696 (729)
+..+...+++++|+..++++++. ++.+...|..++..|.+.|+.+.|+..|--|. .++|
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~--~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWAL--DLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHh--cCCC
Confidence 55566667777777777777764 23344566667777777777777777777666 4444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-10 Score=116.76 Aligned_cols=276 Identities=13% Similarity=0.064 Sum_probs=127.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 388 TLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMG 467 (729)
Q Consensus 388 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 467 (729)
.-.+-+...+++.+..++.+++.+.. ++....+..-|.++...|+..+-..+=.++.+. .|....+|-++.-.|...|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 33344444445555555555444432 233333333344444444444444444444443 2334445555554444455
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 468 NLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLR 547 (729)
Q Consensus 468 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 547 (729)
+..+|.+.|.+....... =...|......|.-.|..|+|+..+....+. ++....-+--+.--|.+.++.+.|.+.|.
T Consensus 327 k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred CcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 555555555444432111 1234444444555555555555554444332 11111111122233444555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 548 KMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK----G--LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 548 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
++....+ .|+..++-+.-.....+.+.+|...|+..+.. + ..--..+++.|+.+|.+.+++++|+..+++.+.
T Consensus 405 ~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 405 QALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5554432 24444555544444555555555555544421 0 001123455555556666666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 622 KGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 622 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
.. +-+..++.+++-.|...|+++.|++.|.+... +.|+..+...++.
T Consensus 484 l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 484 LS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred cC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 42 22555555555556666666666666665554 3455444444433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.1e-13 Score=135.04 Aligned_cols=282 Identities=12% Similarity=0.048 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHH-
Q 004814 190 EQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGI--KPSIVTYNTMLDSFCKEGEMQEALELL- 266 (729)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~- 266 (729)
++|+..|++....-.. .......+..+|...+++++|.++|+.+.+... -.+..+|.+.+..+-+ +-++..+
T Consensus 336 ~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 336 REALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 4555555554433211 112233345555555555555555555544310 1234455555444321 1112221
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 004814 267 WEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP 346 (729)
Q Consensus 267 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 346 (729)
+.+.+. -+-.+.+|-++.+.|.-+++.+.|++.|++.++.+ +...++|+.+..-+.....+|.|...|+..+...+.
T Consensus 411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 111111 12234556666666666666666666666555543 124555555555555556666666666555543111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLID 426 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~ 426 (729)
+-..|--+.-.|.+.++++.|.-.|+...+.++ .+.+....+...+.+.|+.|+|++++++....+.. |+..--.-+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHH
Confidence 222333344555666666666666666655554 34445555555566666666666666665554322 3322223344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 427 GLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
.+...++.++|...++++.+. .+.+..++..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 566 il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 455556666666666666554 2334555556666666666666666666665554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-10 Score=106.58 Aligned_cols=495 Identities=11% Similarity=0.058 Sum_probs=295.8
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEAL 263 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 263 (729)
.-..++..|+.+++--...+-.-...+-..+..++.+.|++++|..+|..+.+.. .++...+.-|.-.+.-.|.+.+|.
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 3456677777777766544332222223346667788899999999988877654 556666666666666778888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 004814 264 ELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRG 343 (729)
Q Consensus 264 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (729)
.+-....+ +.-.-..|+..--+.++-++-..+...+.+. ..--.+|.......-.+.+|++++......+
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77655432 3444455666666778877777766665432 1223345555555567888999998888753
Q ss_pred CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 004814 344 VAPTLATYNI-LIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYN 422 (729)
Q Consensus 344 ~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~ 422 (729)
|+-...|. +.-+|.+..-++-+.++++-.+..-+ .+....|.......+.=.-..|.+-.+++.+.+-.. |
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p-dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~- 253 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP-DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y- 253 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC-CcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-
Confidence 23333332 34566777778888888877766432 344555555544444333333444444444432111 1
Q ss_pred HHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 004814 423 TLIDGLCRY-----GDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAG 497 (729)
Q Consensus 423 ~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 497 (729)
..+.-+++. ..-+.|.+++-.+.+. -|. .-..|+-.|.+++++++|..+.+++... .|-......+..+
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~a 327 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFA 327 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHH
Confidence 223334443 3447788887777654 233 3345566688999999999888766432 2222222222211
Q ss_pred -----HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004814 498 -----ELKLGDTSEAYRLQEEMLAKGFPPDL-ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEM 571 (729)
Q Consensus 498 -----~~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 571 (729)
........-|.+.|+-+-..+..-|. ..-.++...+.-..++++.+..+..+..--...|...+ .+..+++..
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~at 406 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLAT 406 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHh
Confidence 11222345566666555444433332 23445666666677899999888888776544444444 477889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 004814 572 GDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVIT-YNALINGLCRLRRIDQAYGL 650 (729)
Q Consensus 572 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~ 650 (729)
|.+.+|.++|-.+....++.+..-...|..+|.++++++.|..++-++.. +.+..+ ...+..-|.+++.+=-|-+.
T Consensus 407 gny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKA 483 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKA 483 (557)
T ss_pred cChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999997776554443343445566788999999988777655542 223333 34455678889998888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHhhhccchhhcHHH
Q 004814 651 FIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC-THSALLLKQLDKDYKVHAVE 719 (729)
Q Consensus 651 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~-~~~~ll~~~l~~~g~~~a~~ 719 (729)
|+.+... .|++.-|. |+--....+|..+..+.-.|-+. +.+.+ +..+...+..++.-
T Consensus 484 Fd~lE~l--DP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~~~rEV-vhllr~~~nsq~E~ 541 (557)
T KOG3785|consen 484 FDELEIL--DPTPENWE---------GKRGACAGLFRQLANHKTDPIPISQMREV-VHLLRMKPNSQCEF 541 (557)
T ss_pred hhHHHcc--CCCccccC---------CccchHHHHHHHHHcCCCCCCchhHHHHH-HHHHHhCCCchHHH
Confidence 8887764 57766663 33333445566665444444332 33334 55566555555433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-09 Score=111.56 Aligned_cols=423 Identities=16% Similarity=0.129 Sum_probs=203.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHH
Q 004814 256 EGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNL 335 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (729)
.+++...+++.+.+.+. .+-...|.....-.++..|+-++|....+..++.++. +.+.|..+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 35555555555555553 2333344444444455556666666666555554322 455566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-C
Q 004814 336 EEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRN-L 414 (729)
Q Consensus 336 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~ 414 (729)
|......+.. |...+.-+.-.-.+.|+++.....-....+..+ .....|..++.++.-.|+...|..++++..+.. -
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6666654433 455555555555555666555555555554332 334456666666666666666666666655433 2
Q ss_pred CCCHhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 415 VPTVVTYNTLI------DGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR 488 (729)
Q Consensus 415 ~~~~~~~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 488 (729)
.|+...|.... ....+.|..+.|.+.+..-... +......-..-...+.+.+++++|..++..++.. .||.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 34444333222 2234455556666555544332 1112222233444556666677777777666665 4555
Q ss_pred hhHHHHHH-HHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004814 489 FAYTTQIA-GELKLGDTSEAY-RLQEEMLAKGFPPDLITYNVL-VHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSII 565 (729)
Q Consensus 489 ~~~~~li~-~~~~~g~~~~A~-~l~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 565 (729)
..|..... ++.+-.+.-++. .+|....+. .|-...-..+ ++......-.+..-+++..+++.|+++- +..+.
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~ 327 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLR 327 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhH
Confidence 54444332 332333333333 444443332 1111111111 1111111223333445555555554422 22222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC--C------------CCCChhhH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRK--G------------LSPTLVTY--TVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI 629 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~--~------------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 629 (729)
..|-.-...+--.++.-.+... | -+|....| ..++..|-+.|+++.|..+++.++.+ .|+.+
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH
Confidence 2221111111111111111110 0 03443333 33455566667777777777666654 34322
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 630 -TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDRE 693 (729)
Q Consensus 630 -~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 693 (729)
.|..-...+...|++++|...+++..+.+ .+|...-..-+.-..++++.++|.++.......|
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 44444566666677777777776666654 4444433344444556666677766666666444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.5e-11 Score=111.62 Aligned_cols=290 Identities=16% Similarity=0.154 Sum_probs=199.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 004814 396 SGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILP---DVITYTIMVNGSCKMGNLSMA 472 (729)
Q Consensus 396 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 472 (729)
..+.++|.++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+++.+.+.+..--+ .......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 345666777776666632 2234445566666777777777777777666541111 122344556667777888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 473 REFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPD----LITYNVLVHGLCKLGSLEEANELLRK 548 (729)
Q Consensus 473 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 548 (729)
+.+|..+.+.|. .-......++..|-+..++++|+++-+++.+.+-.+. ...|..+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888776532 2455667777888888888888888887777653333 23566777777778889999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 549 MVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV 628 (729)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 628 (729)
..+...+ .+..-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++.++.+....++
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~- 283 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD- 283 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-
Confidence 9887533 44455566788899999999999999999875444466788889999999999999999999988643333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHC
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENC---NAGNWQEALRLYKEMLDR 692 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~ 692 (729)
.-..+...-....-.+.|..++.+-+.+ .|+...+..+++.-. ..|.+.+-...+++|+..
T Consensus 284 -~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 -AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3344444444444556777776666664 688888888887543 356688888888888843
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-11 Score=110.96 Aligned_cols=270 Identities=13% Similarity=0.111 Sum_probs=146.0
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCHHHHH
Q 004814 222 GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPN---GVTYNVLITGFSRNGELEQAR 298 (729)
Q Consensus 222 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~ 298 (729)
++.++|.+.|-+|.+.. +.+..+.-+|.+.|.+.|..++|+.+.+.+.++.--+. ......|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34566666666666543 33444555666666666666666666666655411111 112333455566666666666
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 299 GLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTL----ATYNILIYGLCKWGRVSDARHRFFEM 374 (729)
Q Consensus 299 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 374 (729)
++|..+.+.+ .--..+...|+..|-+..++++|+++-+++.+.|..+.. ..|.-|...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 6666666543 223445556666666666666666666666665443322 12333444444455666666666666
Q ss_pred HHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 375 LRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVI 454 (729)
Q Consensus 375 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 454 (729)
.+.++ ..+..-..+.+.+...|++++|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+.. +...
T Consensus 207 lqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 66543 22333344556666666777777666666666544344555666666666666666666666666542 2223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 004814 455 TYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGE 498 (729)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 498 (729)
.-..+...-....-.+.|...+.+-+.. +|+...+..++...
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 3333333333333444454444444433 45655555555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-11 Score=113.08 Aligned_cols=291 Identities=13% Similarity=0.102 Sum_probs=191.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 396 SGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREF 475 (729)
Q Consensus 396 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (729)
.|++.+|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+-+++.++.+....++....-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 566666666666655554222 3344444555556666666666666666653344555555556666666666666666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 476 FNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL-------ITYNVLVHGLCKLGSLEEANELLRK 548 (729)
Q Consensus 476 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 548 (729)
+.++.+.+.. .+.......++|.+.|++.+...++..+.+.|.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666665433 4455556666666777777777776666666654443 3455666655555555554445554
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 549 MVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV 628 (729)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 628 (729)
.... .+.++..-.+++.-+.+.|+.++|.++.++..+++..|+ -.....+.+-++.+.-++..++..+. .+-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 4332 344566667777888888999999999888888765554 12223455677777777777776665 23355
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEP 696 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 696 (729)
..+.+|+..|.+.+.+.+|...|+...+ ..|+..+|..+..++.+.|+.++|.+.+++.+-.-..|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 7788888889999999999999987777 46888899999999999999999998888877433333
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-09 Score=108.75 Aligned_cols=488 Identities=16% Similarity=0.107 Sum_probs=297.5
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH---HHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004814 182 IYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKV---LRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (729)
.+.+.+..++++.-+.+....+...+..++..+-.. +...++.+++ .+-..+.....|....+.+.+.-
T Consensus 236 Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl------ 307 (799)
T KOG4162|consen 236 LWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL------ 307 (799)
T ss_pred HhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH------
Confidence 445667778888888888887776666666554332 3334455554 23222222222222222221111
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 259 MQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEE 338 (729)
Q Consensus 259 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (729)
.-.+.++....+.-|...|..+.-+....|+++.+.+.|++....-+ -....|..+...|...|.-..|..++++
T Consensus 308 ----m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~ 382 (799)
T KOG4162|consen 308 ----MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRE 382 (799)
T ss_pred ----HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 11223333333455778888888888999999999999998876432 2556788888899999999999999888
Q ss_pred HHHCCCCCCHHHHHHHHH-HHH-hcCCHHHHHHHHHHHHHC--CC--CCCHhHHHHHHHHHHHc-----------CCHHH
Q 004814 339 MVTRGVAPTLATYNILIY-GLC-KWGRVSDARHRFFEMLRK--NV--IPDIISYNTLLYGYCRS-----------GNIGE 401 (729)
Q Consensus 339 m~~~g~~p~~~~~~~li~-~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~ 401 (729)
-......|+..+--.++. .|. +.+.+++++..-.+.+.. +. ......|..+.-+|... ....+
T Consensus 383 ~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 383 SLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred hcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 776543344433333333 332 346677777666665551 11 12334454554444322 12457
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 402 AFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLR 481 (729)
Q Consensus 402 A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (729)
+++.+++..+.+.. |+...-.+.--|+..++++.|.+..++.++.+...+...|..+.-.+...+++.+|+.+.+...+
T Consensus 463 slqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 463 SLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 78888888776522 33333334445778889999999999999986677889999999999999999999999988776
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------C------CCCC-HHHHHHHHHHH
Q 004814 482 KGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK---------------------G------FPPD-LITYNVLVHGL 533 (729)
Q Consensus 482 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---------------------~------~~~~-~~~~~~li~~~ 533 (729)
.-.. |......-+..-...++.++++.....++.. | -+.+ ..++..+..-.
T Consensus 542 E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 542 EFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred Hhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 5111 1111122223333456666666555544331 0 0001 11111111111
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 004814 534 CKLGSLEEANELLRKMVGDG--FIPD------HITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAA 605 (729)
Q Consensus 534 ~~~g~~~~A~~~~~~~~~~~--~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 605 (729)
.. +...+..-. .+.+.- ..|+ ...|......+.+.+..++|...+.+..+.. +-....|...+..+..
T Consensus 621 a~--~~~~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 621 AS--QLKSAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV 696 (799)
T ss_pred Hh--hhhhccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH
Confidence 10 000000000 011110 1122 1234455566777888888888887777653 4456677777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 606 RGRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYG--LFIDMEEEGILPNKYTYTILINENCNAGNWQEA 682 (729)
Q Consensus 606 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 682 (729)
.|..++|.+.|...... .|+ ..+..+++.++.+.|+..-|.. ++.++.+.+ +.+...|..++..+.+.|+.++|
T Consensus 697 ~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHH
Confidence 88888888888888774 443 4577888888888887776666 888888876 66778888888888888888888
Q ss_pred HHHHHHHHH
Q 004814 683 LRLYKEMLD 691 (729)
Q Consensus 683 ~~~~~~m~~ 691 (729)
.+.|..+.+
T Consensus 774 aecf~aa~q 782 (799)
T KOG4162|consen 774 AECFQAALQ 782 (799)
T ss_pred HHHHHHHHh
Confidence 888888873
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-10 Score=112.72 Aligned_cols=284 Identities=18% Similarity=0.169 Sum_probs=145.2
Q ss_pred CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 292 GELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRF 371 (729)
Q Consensus 292 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 371 (729)
|++..|+++..+-.+.+.. ....|..-+.+.-+.|+.+.+-.++.+..+....++...+-+........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4444454444444443321 222333334444445555555555555444322334444555555555566666666666
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 372 FEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV-------VTYNTLIDGLCRYGDLEVAQQLKENM 444 (729)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~ 444 (729)
+++.+.++ .+.........+|.+.|++.+...++..|.+.+.-.|. .+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 55555544 34455555566666666666666666666655543332 23444444444444444444444444
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 445 INQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLI 524 (729)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 524 (729)
... .+.++..-..++.-+.+.|+.++|.++..+..+++..|. -...-...+.++.+.-++..+.-.+. .+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 332 233444555556666666666666666666666644433 11112233445555555555544443 234445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 525 TYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNML 585 (729)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (729)
.+.+|...|.+.+.+.+|...|+..++. .|+..+|+.+.+++.+.|+.++|.++.++.+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5555555555666666666666555543 3555555555555666666665555555544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-10 Score=106.47 Aligned_cols=449 Identities=14% Similarity=0.090 Sum_probs=286.2
Q ss_pred HHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004814 217 VLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQ 296 (729)
Q Consensus 217 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 296 (729)
-+....++..|+.+++.-...+-.....+-.-+..++...|++++|...+..+... -.|+...+..|...+.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHH
Confidence 34456678888888776655442222234444567777899999999999988875 46677778788888888899999
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 297 ARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 297 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 376 (729)
|..+-.+..+ ++-.-..+.....+.|+-++-..+.+.+... ..--.+|.......-.+++|++++.+.+.
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888765432 3333445556666778877777776666542 23344566666666778999999999988
Q ss_pred CCCCCCHhHHHHHHH-HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 377 KNVIPDIISYNTLLY-GYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVIT 455 (729)
Q Consensus 377 ~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 455 (729)
.+ |+-...|..+. .|.+..-++-+.++++-..+. ++-++..-|..+....+.=.-..|++-...+.+.+-..
T Consensus 180 dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 DN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred cC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 65 55555555444 456677777788887776654 23334444444433333322233444444444432111
Q ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 456 YTIMVNGSCKM-----GNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLV 530 (729)
Q Consensus 456 ~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li 530 (729)
...+.-+++. .+-+.|++++--+.+. -+.+-..++--|.+++++.+|..+.+++. |..+.-|-.-.
T Consensus 253 -~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKg 323 (557)
T KOG3785|consen 253 -YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKG 323 (557)
T ss_pred -chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHH
Confidence 1123333443 3557788888777764 33445566777899999999999988764 22333332222
Q ss_pred HHHHhcC-------CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004814 531 HGLCKLG-------SLEEANELLRKMVGDGFIPDHI-TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHA 602 (729)
Q Consensus 531 ~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 602 (729)
-.++..| ...-|.+.|+-.-+.+..-|.. --.++..++.-..++++.+-.++.+..--...|...+ .+.++
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence 2233333 3445666665544444333322 2344555566667788888888887765333444444 57889
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITY-NALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTY-TILINENCNAGNWQ 680 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~ 680 (729)
++..|.+.+|.++|-++....++ |..+| ..|..+|.++++.+-|+.++-++.. +.+..+. ..+.+.|.+++.+-
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765555 44555 5667889999999999888755432 3344444 45567899999998
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 004814 681 EALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 681 ~A~~~~~~m~~~~~~pd~~ 699 (729)
-|-+.|+.+- -..|++.
T Consensus 479 yaaKAFd~lE--~lDP~pE 495 (557)
T KOG3785|consen 479 YAAKAFDELE--ILDPTPE 495 (557)
T ss_pred HHHHhhhHHH--ccCCCcc
Confidence 8888888886 4455443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-11 Score=131.19 Aligned_cols=234 Identities=15% Similarity=0.012 Sum_probs=160.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHH---------cC
Q 004814 121 KRDEFVFCTILEILIE-----SGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYT---------KK 186 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~-----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~---------~~ 186 (729)
..+..+|...++.... .+.+++|...++++++.+|. +...+..++.+|. ..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~---------------~a~a~~~La~~~~~~~~~g~~~~~ 317 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN---------------SIAPYCALAECYLSMAQMGIFDKQ 317 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHHHHHHHHcCCcccc
Confidence 3456666666665432 13457899999999999887 3445555555443 33
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004814 187 SMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELL 266 (729)
Q Consensus 187 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 266 (729)
+++++|...++++++.++. +..++..+..++...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4578899999998887765 67777778888888888888888888888875 556777888888888888888888888
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 004814 267 WEMQGRGCSPN-GVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVA 345 (729)
Q Consensus 267 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (729)
++..+. .|+ ...+..++..+...|++++|...++++.+...+.++..+..+...+...|+.++|.+.+.++.....
T Consensus 396 ~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~- 472 (553)
T PRK12370 396 NECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI- 472 (553)
T ss_pred HHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-
Confidence 888876 333 2233334445666788888888888877654333455566777777788888888888877655422
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 346 PTLATYNILIYGLCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 346 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 376 (729)
.+....+.+...|+..| +.|...++.+.+
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 13344455555666666 366666666554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.1e-11 Score=123.64 Aligned_cols=252 Identities=15% Similarity=0.160 Sum_probs=156.8
Q ss_pred HHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004814 195 VFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGC 274 (729)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 274 (729)
++-.+...|..|+-++|.+++..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455667788888888888888888888888887 8887777666777778888888877777776655
Q ss_pred CCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHH----hCCCc-cCh-------------hhHHHHHHHHHhCCCHHHHH
Q 004814 275 SPNGVTYNVLITGFSRNGELEQ---ARGLIRDML----KLGLK-VSA-------------HSYNPIICGYSEKGLLVEAL 333 (729)
Q Consensus 275 ~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~~~~-~~~-------------~~~~~li~~~~~~g~~~~A~ 333 (729)
.|-..||..|..+|...||... .++.+..+. ..|+. +.. ..-...+....-.|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888887544 333222221 12211 000 01112333344445555555
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004814 334 NLEEEMVTRGV-APTLATYNILIYGLCKW-GRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 334 ~~~~~m~~~g~-~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 411 (729)
+++..+..... .|-.+ ++.-.... ..+++-..+.....+ .|+..+|..+++.-..+|+.+.|..++.+|++
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 55544432211 11111 12211111 122222222222222 37888888888888888888888888888888
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 412 RNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGN 468 (729)
Q Consensus 412 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (729)
.|++.+.+-|-.|+-+ .++...++.+++.|.+.|+.|+..|+...+-.+.++|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888777776666644 77777888888888888888888887776666655444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-08 Score=106.40 Aligned_cols=479 Identities=14% Similarity=0.013 Sum_probs=301.1
Q ss_pred HCCChhHHHHHHHHHHhCCCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004814 220 DNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD---SFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQ 296 (729)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 296 (729)
+.+..++++.-+......+.+.+..++-.+-. .|+..|+.+++ .|-........|....+.+.+...
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm-------- 308 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM-------- 308 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH--------
Confidence 35566777777777776666666665555433 34456666666 333333322333333333222111
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 297 ARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 297 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 376 (729)
-.+.++....+..+...|..+.-+....|+++.+.+.|++....- ......|+.+...|...|.-..|..+++.-..
T Consensus 309 --~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 309 --LLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred --HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 123333333455688888899999999999999999999987643 33677899999999999999999999988776
Q ss_pred CCCCCC-HhHHHHHHHHHH-HcCCHHHHHHHHHHHhhC--CC--CCCHhhHHHHHHHHHhc-----------CCHHHHHH
Q 004814 377 KNVIPD-IISYNTLLYGYC-RSGNIGEAFLLFDELRSR--NL--VPTVVTYNTLIDGLCRY-----------GDLEVAQQ 439 (729)
Q Consensus 377 ~~~~~~-~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~ 439 (729)
....|+ ...+...-..|. +.+..++++++-.+.... +. ......|..+.-+|... ....++.+
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 553343 444433334443 346777777766665541 11 11234454554444322 12457778
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 440 LKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGF 519 (729)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 519 (729)
.+++..+.+ +.|+.+...+.--|+..++.+.|.+..++.++.+...+...|..+.-.+...+++.+|+.+.+..... .
T Consensus 466 ale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~ 543 (799)
T KOG4162|consen 466 ALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-F 543 (799)
T ss_pred HHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-h
Confidence 888888765 22333333444457888999999999999999877778899999999999999999999999887664 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------C-------CCCCHHHHHHHHHHHHhc
Q 004814 520 PPDLITYNVLVHGLCKLGSLEEANELLRKMVGD---------------------G-------FIPDHITYTSIIHASLEM 571 (729)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------~-------~~p~~~~~~~l~~~~~~~ 571 (729)
+.|......-+..-...++.++|+.....++.. | ..-...++..+.......
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 222222222222223345555555444333221 0 000111222221111100
Q ss_pred CCHHHHHHHHHHHHHCCCC--CC------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 572 GDLRRGRDLFNNMLRKGLS--PT------LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRR 643 (729)
Q Consensus 572 g~~~~A~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 643 (729)
.+.+..-.. +.+.... |+ ...|......+.+.+..++|...+.++... .+-....|...+..+...|.
T Consensus 624 --~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 624 --LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred --hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHh
Confidence 000000000 1111111 22 224556677788899999999999998875 23356677788888899999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHH-HHHHHHHhhhccchhhc-HHH
Q 004814 644 IDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALR--LYKEMLDREIEPDYC-THSALLLKQLDKDYKVH-AVE 719 (729)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~pd~~-~~~~ll~~~l~~~g~~~-a~~ 719 (729)
..+|.+.|......+ |.+..+..++...+.+.|+-.-|.. ++..++ .+.|+.+ .|..+ +..+.+.|+.+ |.+
T Consensus 700 ~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dal--r~dp~n~eaW~~L-G~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 700 LEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDAL--RLDPLNHEAWYYL-GEVFKKLGDSKQAAE 775 (799)
T ss_pred hHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH--hhCCCCHHHHHHH-HHHHHHccchHHHHH
Confidence 999999999998853 3345688999999999998777777 999999 7788655 45555 99999999998 776
Q ss_pred HH
Q 004814 720 YL 721 (729)
Q Consensus 720 ~l 721 (729)
.+
T Consensus 776 cf 777 (799)
T KOG4162|consen 776 CF 777 (799)
T ss_pred HH
Confidence 55
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-09 Score=109.96 Aligned_cols=580 Identities=11% Similarity=0.001 Sum_probs=339.2
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHH
Q 004814 100 IREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLL 179 (729)
Q Consensus 100 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 179 (729)
.+.+...|+..|-.+.+.. ..=..+|+.|+++|...-+...|...|.++.+.++. ........
T Consensus 470 ~rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat---------------daeaaaa~ 532 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT---------------DAEAAAAS 532 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---------------hhhhHHHH
Confidence 3456677887666555433 123467899999998888888899999999888776 34455667
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCC-CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLL-PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (729)
+..|+....++.|..+.-..-+..+. .-...|..+.-.+.+.++...|+..|+...+.. |.|...|..++.+|..+|+
T Consensus 533 adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 533 ADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred HHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCc
Confidence 78888889999998884433333211 011223344555677888899999999988876 6678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCC------CccChhhHHHHHHHHHhCCCHHH
Q 004814 259 MQEALELLWEMQGRGCSPNG-VTYNVLITGFSRNGELEQARGLIRDMLKLG------LKVSAHSYNPIICGYSEKGLLVE 331 (729)
Q Consensus 259 ~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~ 331 (729)
+..|.++|.+.... .|+. ..---.....|..|.+++|...+......- ..--..++..+...+...|-...
T Consensus 612 y~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k 689 (1238)
T KOG1127|consen 612 YSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK 689 (1238)
T ss_pred eehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 99999999888765 3432 222223345677899999998888876431 11122333344444444555555
Q ss_pred HHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH---H-
Q 004814 332 ALNLEEEMVTR-------GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNI---G- 400 (729)
Q Consensus 332 A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~- 400 (729)
|.+.+++-.+. ....+...|..+ .+|..+|..... + .|+......+..-.-+.+.. +
T Consensus 690 avd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~ 757 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDL 757 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhH
Confidence 55555544332 111122222211 233344443331 1 13333333333322222222 1
Q ss_pred --HHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----c---C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 401 --EAFLLFDELRSRNLVPTVVTYNTLIDGLCR----Y---G-DLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLS 470 (729)
Q Consensus 401 --~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~----~---g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 470 (729)
-+.+.+-.-.+ ...+..+|..|+..|.+ . + +...|...+.+.++.. ..+..+|+.|.-. ...|++.
T Consensus 758 l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva 833 (1238)
T KOG1127|consen 758 LFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVA 833 (1238)
T ss_pred HHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhh
Confidence 01111111111 11234444445444433 1 2 2346777777777653 4467778777654 5667887
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 004814 471 MAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKM- 549 (729)
Q Consensus 471 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 549 (729)
-|...|-+..... +....+|..+...+.+..+++.|...|....... |.+...|-.........|+.-++..+|..-
T Consensus 834 ~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~ 911 (1238)
T KOG1127|consen 834 CAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSD 911 (1238)
T ss_pred hhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 7777776665542 2356778888888899999999999999887764 667777776666666788888888888762
Q ss_pred -H--hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------CCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 004814 550 -V--GDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLR---------KGLSPTLVTYTVLIHAHAARGRLELAFMYFS 617 (729)
Q Consensus 550 -~--~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (729)
. ..|--++..-|-........+|+.++-....+++.. .+.+.+...|...+...-+.+.+.+|.+...
T Consensus 912 el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~ 991 (1238)
T KOG1127|consen 912 ELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELAT 991 (1238)
T ss_pred HhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2 223334444444444445666766654443333221 1446677888888888888888888877776
Q ss_pred HHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 618 EMQVK-GIRPNVITYN----ALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDR 692 (729)
Q Consensus 618 ~~~~~-g~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 692 (729)
+.... ..+-+...|+ .+...++..|.++.|..-+...-. ..+..+..+-+ +..-.|+++++.+.|++++.-
T Consensus 992 RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsi 1067 (1238)
T KOG1127|consen 992 RLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSI 1067 (1238)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhh
Confidence 65421 0122334444 344556666777765544332211 11111111111 123478889999999998832
Q ss_pred -CCCCCHHHHHHHHHhhhccchhhc-HHHHH
Q 004814 693 -EIEPDYCTHSALLLKQLDKDYKVH-AVEYL 721 (729)
Q Consensus 693 -~~~pd~~~~~~ll~~~l~~~g~~~-a~~~l 721 (729)
+-..|.+...+-++.+++.++..+ |.+.+
T Consensus 1068 s~se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1068 SNSESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred cccccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 223343333333355666666666 66554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-09 Score=113.25 Aligned_cols=131 Identities=14% Similarity=0.090 Sum_probs=80.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHh
Q 004814 563 SIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK--GIRPNVITYNALINGLCR 640 (729)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~ 640 (729)
.++..++..-+..+++..-++....-+ ...|..|++-++...+.+.|..+.++.... .+..|..-+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 344444444444444444333332211 256777888888888888888887777543 123345556777788888
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 641 LRRIDQAYGLFIDMEEEGI-LPN-KYTYTILINENCNAGNWQEALRLYKEMLDREIEP 696 (729)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 696 (729)
.+....+.++++++.+.-. .|+ ..+...+.+.....|+.+.-.+..+-+...|+.-
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8888888888888776311 222 2344556666677788777777777766555554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-09 Score=109.19 Aligned_cols=294 Identities=18% Similarity=0.169 Sum_probs=205.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHh-HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKN-CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKE 256 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (729)
-...++...|++++|++.+++-...- +|..+ ....+..+.+.|+.++|..+|+.+++.+ |.|..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhh
Confidence 34566788999999999998866542 45444 5568889999999999999999999987 55666666666666333
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHH
Q 004814 257 -----GEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGEL-EQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLV 330 (729)
Q Consensus 257 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 330 (729)
.+.+...++|+++... -|.......+.-.+..-..+ ..+...+..++..|+| .+|+.|-..|....+..
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 2577888999988776 24333332222222221223 3456667777788864 46777777777666666
Q ss_pred HHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 004814 331 EALNLEEEMVTR----G----------VAPTL--ATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYC 394 (729)
Q Consensus 331 ~A~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (729)
-..+++...... | -.|.. .++.-+...|...|++++|++.+++.+...+ -.+..|..-.+.+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH
Confidence 666666665532 1 12333 3446667778889999999999999888764 34677888888888
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhc
Q 004814 395 RSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVI------TY--TIMVNGSCKM 466 (729)
Q Consensus 395 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~ 466 (729)
+.|++.+|.+.++..+... ..|...-+-.+..+.+.|++++|.+++....+.+..|... .| .....+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888775 3366667777788888999999999988887765433221 12 3446677888
Q ss_pred CCHHHHHHHHHHHHH
Q 004814 467 GNLSMAREFFNEMLR 481 (729)
Q Consensus 467 g~~~~A~~~~~~~~~ 481 (729)
|++..|++.|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888887776655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.4e-11 Score=128.08 Aligned_cols=249 Identities=15% Similarity=0.058 Sum_probs=183.1
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh---------cCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHH
Q 004814 104 PRIALRFFRWVETQPGVKRDEFVFCTILEILIE---------SGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIK 174 (729)
Q Consensus 104 ~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~---------~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (729)
.+.|+.+|+.+.... +.+..+|..+..++.. .+.+++|...++++++.+|+ +..
T Consensus 277 ~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~---------------~~~ 339 (553)
T PRK12370 277 LQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN---------------NPQ 339 (553)
T ss_pred HHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC---------------CHH
Confidence 468889998887654 3466777777765542 23478999999999999887 577
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.+..+..++...|++++|...|+++++.++. +...+..+..++...|++++|...+++..+.+ +.+...+..++..+.
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 8888999999999999999999999998755 67778889999999999999999999999875 333444445555677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
..|++++|...++++.+...+-+...+..+...+...|+.++|.+.++++.... +.+....+.+...|+..| ++|..
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~ 494 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALP 494 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHH
Confidence 789999999999998775322245567778888999999999999999976653 234455666777778777 47777
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 335 LEEEMVTRG-VAPTLATYNILIYGLCKWGRVSDARHRFFEMLRK 377 (729)
Q Consensus 335 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 377 (729)
.++.+.+.. ..+....+ +-..+.-.|+-+.+..+ +++.+.
T Consensus 495 ~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 495 TIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 777766531 11111122 33334445666666554 555553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-07 Score=100.20 Aligned_cols=195 Identities=12% Similarity=0.141 Sum_probs=118.9
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccch------------------hhhHH
Q 004814 100 IREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMH------------------GILDV 161 (729)
Q Consensus 100 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~------------------~~~~~ 161 (729)
.+.+|+.++.|-..+.+..+ ...-.+.+..+.......+++..++-.+++.+.. .+.|.
T Consensus 521 ~r~sPD~~~qFa~~l~Q~~~---~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADA 597 (1666)
T KOG0985|consen 521 KRSSPDQALQFAMMLVQDEE---PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADA 597 (1666)
T ss_pred HccChhHHHHHHHHhhccCC---CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHH
Confidence 35688999988877765443 3445566777777777777777766666654321 12233
Q ss_pred HhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHH----HHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 162 LIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN----RIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 162 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
++++.--+ .. -+-.+++.|-++|-++.|++.|..+.... ..++.-+ --+..+...-.++++.+.++.|...
T Consensus 598 ILgN~mFt--Hy-Dra~IAqLCEKAGL~qraLehytDl~DIK--R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~ 672 (1666)
T KOG0985|consen 598 ILGNDMFT--HY-DRAEIAQLCEKAGLLQRALEHYTDLYDIK--RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSA 672 (1666)
T ss_pred HHhccccc--cc-cHHHHHHHHHhcchHHHHHHhcccHHHHH--HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33221111 11 15678889999999999998877664321 0111000 1122344445678888888888887
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004814 238 GIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR-----------GCSPNGVTYNVLITGFSRNGELEQARGLIR 302 (729)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 302 (729)
+++.|..+...+..-|+.+=-.+...++|+..+.. ++..|....--.|.+.|+.|++.+.+++.+
T Consensus 673 NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicr 748 (1666)
T KOG0985|consen 673 NIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICR 748 (1666)
T ss_pred HHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHh
Confidence 77777777766666676666666666666665432 133344444566778888888887777644
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-08 Score=98.40 Aligned_cols=444 Identities=14% Similarity=0.111 Sum_probs=252.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHH--HHHHHH--
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNT--MLDSFC-- 254 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~-- 254 (729)
=++.+.+.|++++|++...+++..++. |..++..-+.++.+.++|++|+.+.+.-.. ..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 356688999999999999999998754 666777888889999999999966553221 112222 245555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhCCCHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSP-NGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV-SAHSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A 332 (729)
+.++.++|+..++- ..+ +..+...-...+.+.|++++|..+|+.+.+.+.+. +...-..++..- .+
T Consensus 91 rlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~ 158 (652)
T KOG2376|consen 91 RLNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AA 158 (652)
T ss_pred HcccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------Hh
Confidence 78999999999882 333 33466666788899999999999999998876431 111111111111 11
Q ss_pred HHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHC-------CCCC--CHh-----HHHHHHHHHHH
Q 004814 333 LNLEEEMVTRGVAPTLATYNI---LIYGLCKWGRVSDARHRFFEMLRK-------NVIP--DII-----SYNTLLYGYCR 395 (729)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~-------~~~~--~~~-----~~~~li~~~~~ 395 (729)
... ..+......| ..+|.. ....+...|++.+|+++++..... +-.- +.. .-..|..++..
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 1122222222 223333 345677889999999999887321 1101 111 12234456677
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhh----HHHHHHHHHhcCCHH--HHHHHHHHHHHCCC----------CCCHHHH-HH
Q 004814 396 SGNIGEAFLLFDELRSRNLVPTVVT----YNTLIDGLCRYGDLE--VAQQLKENMINQGI----------LPDVITY-TI 458 (729)
Q Consensus 396 ~g~~~~A~~l~~~m~~~~~~~~~~~----~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~----------~~~~~~~-~~ 458 (729)
.|+.++|..+|......+ .+|... -|.|+.. ....++- .++..++....... ....... +.
T Consensus 237 ~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred hcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999888875 334322 2222221 1111111 11112211111000 0011111 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 459 MVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQI-AGEL-KLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKL 536 (729)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li-~~~~-~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 536 (729)
++..| .+..+.+.++...+... .|.. .+..++ .+.. +...+.++.+++...-+..-.....+.-.++......
T Consensus 315 lL~l~--tnk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 315 LLALF--TNKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHH--hhhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 22222 23334444443333221 2332 233333 2222 2224677777777766653222345556667777888
Q ss_pred CCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhh----HHHHHHH
Q 004814 537 GSLEEANELLR--------KMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK--GLSPTLVT----YTVLIHA 602 (729)
Q Consensus 537 g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~----~~~l~~~ 602 (729)
|+++.|.+++. .+.+.+..|- +...+...+.+.++.+.|..++++.... .-.+.... +.-+...
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 89999988888 5555554444 4445566677777777777777766542 00122222 2233333
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDM 654 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 654 (729)
-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 446788888888888888853 45777888888888876 667777665544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-10 Score=109.10 Aligned_cols=200 Identities=15% Similarity=0.081 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
....+..++..|...|++++|...++++.+..+. +...+..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3556777788888888888888888888776533 45666777777788888888888888777654 445566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHH
Q 004814 252 SFCKEGEMQEALELLWEMQGRGCS-PNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLV 330 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 330 (729)
.+...|++++|.+.+++....... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 777778888888877777654211 223445556666667777777777777766553 223445556666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 331 EALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEML 375 (729)
Q Consensus 331 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 375 (729)
+|.+.+++.... .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666554 22244444455555555566666655555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-10 Score=109.64 Aligned_cols=203 Identities=14% Similarity=0.028 Sum_probs=168.2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.....+..++..+...|++++|...+++++..+|. +...+..++..|...|++++|.+.+++..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 93 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD---------------DYLAYLALALYYQQLGELEKAEDSFRRALT 93 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34577888899999999999999999999887665 456778889999999999999999999998
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGI-KPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVT 280 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 280 (729)
..+. +...+..+...+...|++++|.+.|++..+... +.....+..+...+...|++++|.+.+++..... +.+...
T Consensus 94 ~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 171 (234)
T TIGR02521 94 LNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPES 171 (234)
T ss_pred hCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHH
Confidence 7654 566778888999999999999999999987422 2234567778889999999999999999988763 335667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 281 YNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
+..+...+...|++++|...+++..+. .+.+...+..++..+...|+.++|..+.+.+...
T Consensus 172 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 172 LLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888899999999999999999999887 3456677778888889999999999988877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.6e-08 Score=101.59 Aligned_cols=295 Identities=15% Similarity=0.097 Sum_probs=205.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChH
Q 004814 130 ILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVK 209 (729)
Q Consensus 130 l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 209 (729)
...++...|++++|+..++.....-++ ...+....+..|.+.|+.++|..++..+++.++. |..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~D---------------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~ 73 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILD---------------KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYD 73 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHH
Confidence 345678899999999988765443222 3556778888999999999999999999998743 444
Q ss_pred hHHHHHHHHHHC-----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 210 NCNRIIKVLRDN-----GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM-QEALELLWEMQGRGCSPNGVTYNV 283 (729)
Q Consensus 210 ~~~~ll~~l~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~ 283 (729)
-|..+..++.-. ...+....+|+++...- |...+...+.-.+.....+ ..+...+..+..+|++ .+|+.
T Consensus 74 Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~ 148 (517)
T PF12569_consen 74 YYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSN 148 (517)
T ss_pred HHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHH
Confidence 445555555222 24677788888887652 4333333332222222223 3455666777777755 35666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC----C----------CccCh--hhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 004814 284 LITGFSRNGELEQARGLIRDMLKL----G----------LKVSA--HSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPT 347 (729)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 347 (729)
|-..|....+.+-..+++...... + -+|+. .++.-+...|...|++++|++..++.++..+. .
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~ 227 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-L 227 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-c
Confidence 666676555556666666665432 1 12333 34466677888999999999999999887432 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhh-------
Q 004814 348 LATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVT------- 420 (729)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~------- 420 (729)
+..|..-...+-..|++.+|.+.++.....+. .|...-+-.+..+.++|++++|.+++......+..|-...
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 77888889999999999999999999988766 6777778888889999999999999988877664332221
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 421 -YNTLIDGLCRYGDLEVAQQLKENMINQ 447 (729)
Q Consensus 421 -~~~ll~~~~~~g~~~~A~~~~~~~~~~ 447 (729)
......+|.+.|++..|++.|..+.+.
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 134467888999999998888777653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-11 Score=110.03 Aligned_cols=231 Identities=16% Similarity=0.045 Sum_probs=190.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 004814 177 DLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKE 256 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (729)
..+.++|.+.|++.+|.+.++..++.- |.+.+|..+.++|.+.++...|+.+|.+-++.- +-|+.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 467889999999999999999998874 556677778899999999999999999888752 34444445677788888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHH
Q 004814 257 GEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLE 336 (729)
Q Consensus 257 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (729)
++.++|.++|++..+. .+.++.....+...|.-.++.+-|...++++++.|.. ++..|+.+.-+|...++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999998886 3446777777888899999999999999999999865 7888999988888999999999999
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 004814 337 EEMVTRGVAPT--LATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRN 413 (729)
Q Consensus 337 ~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 413 (729)
++....--.|+ ...|-.+.......|++..|.+.|.-.+..+. .+...+|.|.-.-.+.|++++|..++.......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88887543333 34577788888889999999999998888765 567788999888899999999999998877653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-08 Score=94.08 Aligned_cols=272 Identities=13% Similarity=0.015 Sum_probs=142.7
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004814 416 PTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQI 495 (729)
Q Consensus 416 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 495 (729)
-|......+.+.+...|+.++|+..|++..-.+ +-+........-.+.+.|+.+.-..+...+.... +-....|-.-.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 344445555555555555555555555544331 1111111111222334455555555544444331 01122222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 496 AGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLR 575 (729)
Q Consensus 496 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (729)
......++++.|+.+-++.++.+ +.+...|-.-...+...|++++|.-.|+..+...+ -+..+|..++++|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHH
Confidence 33344555556665555555543 33444444444555666666666666666655432 25566666666666666666
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 576 RGRDLFNNMLRKGLSPTLVTYTVLI-HAHAA-RGRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFI 652 (729)
Q Consensus 576 ~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 652 (729)
+|.-+-+...+. ++.+..+.+.+. ..+.- -.--++|.+++++.... .|+ ....+.+...+...|+.++++.+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 666665555443 234444444442 22221 12235666666666553 344 2244566666667777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 653 DMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 653 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
+... ..||....+.|.+.+...+.+.+|.+.|..++ .+.|..
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--r~dP~~ 504 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL--RQDPKS 504 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH--hcCccc
Confidence 6665 35666777777777777777777777777766 555544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-10 Score=106.71 Aligned_cols=229 Identities=17% Similarity=0.076 Sum_probs=191.4
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHh
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTY-NVLITGFSR 290 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~ 290 (729)
+.+.++|.+.|.+.+|.+.++...+. .|-+.||..|-++|.+-.+.+.|+.++.+-.+. -|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56888999999999999999988876 678889999999999999999999999988876 4444444 456678888
Q ss_pred CCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 291 NGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHR 370 (729)
Q Consensus 291 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 370 (729)
.++.++|.++++...+.. +.++.+...+...|.-.++++-|+..++++.+-|+. +...|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999998875 457777888888899999999999999999999887 888888888888889999999999
Q ss_pred HHHHHHCCCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 371 FFEMLRKNVIPD--IISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ 447 (729)
Q Consensus 371 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 447 (729)
|.+.+..--.|+ ...|..+.......|++.-|.+.|+-....+ ......++.|.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 988876533333 4678888888889999999999998887764 335678888888888999999999999888765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-07 Score=93.14 Aligned_cols=449 Identities=11% Similarity=0.022 Sum_probs=220.0
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHH
Q 004814 210 NCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVL--ITG 287 (729)
Q Consensus 210 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--i~~ 287 (729)
.+-+=++.+.+.|++++|.+...+++..+ +.+...+..-+-++.+.+++++|+.+.+.-.. ..+++.. =.+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKA 86 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKA 86 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHH
Confidence 33445566677888999999999998866 66677777778888889999999865543221 1112222 234
Q ss_pred HH--hCCCHHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCC
Q 004814 288 FS--RNGELEQARGLIRDMLKLGLKV-SAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLC-KWGR 363 (729)
Q Consensus 288 ~~--~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~ 363 (729)
|| +.+..++|...++ |..+ +..+...-...+.+.|++++|+++|+.+.+.+.+ + +...+..-+ ..+-
T Consensus 87 Yc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAA 157 (652)
T ss_pred HHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHH
Confidence 44 6788898888887 2222 2335555566777889999999999988776432 1 211111110 0010
Q ss_pred HHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHhhC-------CCCCCH-------hhHHHHHHH
Q 004814 364 VSDARHRFFEMLRKNVIP--DIISYNTLLYGYCRSGNIGEAFLLFDELRSR-------NLVPTV-------VTYNTLIDG 427 (729)
Q Consensus 364 ~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------~~~~~~-------~~~~~ll~~ 427 (729)
-..+. + +......| +-..+......+...|++.+|+++++...+. +-.-+. ..-..+...
T Consensus 158 ~l~~~-~---~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 158 ALQVQ-L---LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred hhhHH-H---HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 01110 1 11111212 2222333445566788888888888877221 100011 111234445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCH-H-HHHHHHHHHHHCCC----------CCCHhhH
Q 004814 428 LCRYGDLEVAQQLKENMINQGILPDVIT----YTIMVNGSCKMGNL-S-MAREFFNEMLRKGL----------QPDRFAY 491 (729)
Q Consensus 428 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~-~-~A~~~~~~~~~~g~----------~~~~~~~ 491 (729)
+-..|+.++|..++...++.. ++|... -|.|+.. ..-.++ + .++..++....... +......
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~ 311 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYR 311 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 667788888888888887775 334322 2222211 111111 1 11122221111100 0000000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004814 492 TTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLC--KLGSLEEANELLRKMVGDGFIPDHITYTSIIHASL 569 (729)
Q Consensus 492 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 569 (729)
+..+ ...-.+..+.+.++..... +..|. ..+..++.... +......|.+++...-+....-...+.-.++....
T Consensus 312 N~~l-L~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNAL-LALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHH-HHHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 1100 1111222222222222111 11122 22222222221 12235555566655554433323344455555666
Q ss_pred hcCCHHHHHHHHH--------HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHH
Q 004814 570 EMGDLRRGRDLFN--------NMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK--GIRPN----VITYNALI 635 (729)
Q Consensus 570 ~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~----~~~~~~l~ 635 (729)
..|+++.|.+++. .+.+.+. .+.+...+...+.+.++.+.|..++.++..- .-.+. ..++..++
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 6677777776666 3333332 2334444555566666666666666665431 00111 11223333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
..-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +.+.|..+-++
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 33445566667777777766653 55666666666666543 44555554333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-09 Score=111.20 Aligned_cols=195 Identities=23% Similarity=0.255 Sum_probs=133.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-HHH
Q 004814 496 AGELKLGDTSEAYRLQEEMLAK-----G--FPPDLITYNVLVHGLCKLGSLEEANELLRKMVGD-----GF-IPDH-ITY 561 (729)
Q Consensus 496 ~~~~~~g~~~~A~~l~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~ 561 (729)
..|...+++++|..+|++++.. | .+.-..+++.|...|.+.|++++|...++++.+. +. .|.. ..+
T Consensus 249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 3444445555555555444331 1 1222345666777777778777777766655431 11 1222 246
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C--CCCC
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRK---GLSPT----LVTYTVLIHAHAARGRLELAFMYFSEMQVK-----G--IRPN 627 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g--~~p~ 627 (729)
+.+...++..+++++|..+++...+. -..++ ..+++.|...|.+.|++++|.+++++++.. | ..-.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 66777788889999998888876643 11122 458999999999999999999999998753 1 1112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 628 VITYNALINGLCRLRRIDQAYGLFIDMEE----EGI-LPN-KYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 628 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
...++.+...|.+.+++++|.++|.+... .|. .|+ ..+|..|+..|.+.|++++|+++.+...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45678899999999999999999988654 221 123 3578999999999999999999998887
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-06 Score=91.55 Aligned_cols=375 Identities=12% Similarity=0.114 Sum_probs=192.4
Q ss_pred hhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CCChHhHHHHHHHHHHCCChhHHHHHHHHHH
Q 004814 158 ILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL--LPDVKNCNRIIKVLRDNGFSVKAREVYRMMG 235 (729)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~ 235 (729)
+.|..+...++...++.--..-+.++...+-..+-++++++++-... .-+...-|.++-...+. +.....+..+++.
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLD 1047 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhc
Confidence 34444455555555677777888999999999999999999875321 11111122232222222 2333444444444
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------CCCCHHHHHHHHHHHHhCCCH
Q 004814 236 EFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRG---------------------CSPNGVTYNVLITGFSRNGEL 294 (729)
Q Consensus 236 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------------~~p~~~~~~~li~~~~~~g~~ 294 (729)
..+ .|+ +.......+-+++|..+|++....+ ---....|..+..+-.+.|.+
T Consensus 1048 nyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1048 NYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred cCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCch
Confidence 332 111 1222333344555555554421100 000233455555555566666
Q ss_pred HHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 295 EQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEM 374 (729)
Q Consensus 295 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 374 (729)
.+|.+-|-+. .|+..|..++....+.|.+++-.+.+.-.++..-+|.+. +.||-+|++.+++.+-.+.+
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 6555544321 245556666666666666666666655555544444433 34556666666655544332
Q ss_pred HHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 375 LRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVI 454 (729)
Q Consensus 375 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 454 (729)
.| ||......+.+-|...|.++.|.-+|.. ...|..|...+...|++..|.+.-++. .+..
T Consensus 1190 --~g--pN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1190 --AG--PNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred --cC--CCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence 12 5555555666666666666666555532 233455555556666666665543332 2455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 455 TYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLC 534 (729)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~ 534 (729)
+|..+-.+|...+.+.-| +|...++.....-...++..|...|-+++.+.+++..+... ....-.|+.|.-.|+
T Consensus 1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHH
Confidence 666666665554443322 22222223344456667777888888888888887655331 223445666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHH
Q 004814 535 KLGSLEEANELLRKMVGDGFIP-------DHITYTSIIHASLEMGDLRRG 577 (729)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~p-------~~~~~~~l~~~~~~~g~~~~A 577 (729)
+-. +++..+.++-.-.+--.| ....|+-+.-.|.+-..++.|
T Consensus 1325 kyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1325 KYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred hcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 543 444444333322211011 123455555555555555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-06 Score=85.67 Aligned_cols=267 Identities=15% Similarity=0.007 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLID 426 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~ 426 (729)
|+.....+.+.+...|+.++|...|+.....++ -+........-.+.+.|+.+....+...+.... .-....|-.-+.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 444445555555555555555555555444221 111112222223344555555554444443321 011112222223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 004814 427 GLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSE 506 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 506 (729)
.+...++++.|..+-++.++.+ +.+...+-.-...+...|+.++|.-.|+...... +-+...|..++.+|...|++.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 3344455666666666665543 2344445444555556666666666666655542 1245566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 507 AYRLQEEMLAKGFPPDLITYNVLV-HGLCK-LGSLEEANELLRKMVGDGFIPD-HITYTSIIHASLEMGDLRRGRDLFNN 583 (729)
Q Consensus 507 A~~l~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (729)
|.-+-....+. ++.+..+...+. ..+.- ..--++|.+++++.++. .|+ ....+.+...+...|..+.+..++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 66655555443 244444444442 22222 11236677777766654 333 23445556666677777777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 584 MLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
.+.. .||....+.|.+.+...+.+.+|...|..+...
T Consensus 464 ~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 464 HLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6664 567777777777777777777777777777664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-07 Score=100.72 Aligned_cols=479 Identities=13% Similarity=0.057 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 189 VEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWE 268 (729)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 268 (729)
...|+..|-+.++..+. =...|..|...|+...+...|.+.|+..-+.+ ..+...+....+.|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 66777777777665433 34557777777777777778888888887765 55677777788888888888888877433
Q ss_pred HHhCCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 004814 269 MQGRGCSPNGVTYNV--LITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP 346 (729)
Q Consensus 269 m~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 346 (729)
.-+. -+.-...+|. ..-.|...++...|..-|+...+.+ +.|...|..++.+|...|++..|+++|.+.....+.
T Consensus 552 ~~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~- 628 (1238)
T KOG1127|consen 552 AAQK-APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL- 628 (1238)
T ss_pred Hhhh-chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-
Confidence 3222 1111122222 3334556677788888888877765 337778888888888888888888888777664222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhh-------CC
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRK------NVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRS-------RN 413 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~~ 413 (729)
+...---..-..|..|++.+|+..+...+.. +...-..++..+...+.-.|-..+|.+.+++..+ ..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 1111112234456778888888777776542 1111223333333334444444444444443322 11
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCCCC
Q 004814 414 LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNL---S---MAREFFNEMLRKGLQPD 487 (729)
Q Consensus 414 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~A~~~~~~~~~~g~~~~ 487 (729)
...+...|..+. +|..+|-... .+ .|+......+..-.-..+.. + -+.+.+-.-++. ..+
T Consensus 709 ~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~ 774 (1238)
T KOG1127|consen 709 LQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIH 774 (1238)
T ss_pred hhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhc
Confidence 111122222111 2222222221 11 12222222222112122211 1 111111111111 122
Q ss_pred HhhHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004814 488 RFAYTTQIAGELK--------LGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHI 559 (729)
Q Consensus 488 ~~~~~~li~~~~~--------~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 559 (729)
..+|..++..|.+ ..+...|+..+...++.. ..+...|+.|.-. ...|++.-|...|-+..... +....
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchh
Confidence 4444444443332 122346677777666652 3456666666544 55566666666665555443 23556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV----KGIRPNVITYNALI 635 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~~~~~~l~ 635 (729)
+|..+.-.+.+..+++.|...|...+... |.|...|..........|+.-++..+|..-.+ .|-.++...|-+..
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 67777777777778888888887777664 44556665555555567777777777765221 23334444444443
Q ss_pred HHHHhcCCHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEE---------EGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~---------~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
......|+.++-+...+++.. .|.+.+...|...+....+.+.+++|.....+++
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444455555543333332221 2334455667777666677777777776666654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-06 Score=88.93 Aligned_cols=327 Identities=17% Similarity=0.110 Sum_probs=194.2
Q ss_pred CHHHHHHHHH--HHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 123 DEFVFCTILE--ILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 123 ~~~~~~~l~~--~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
|..|-..|++ .|...|.++.|+...+.+. +..+|+.+++++.+..++|-|.-.+..|.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--------------------S~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--------------------SDSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--------------------hhHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 5566666665 3556788999887654332 45688888888888888888866655543
Q ss_pred HCC---------CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004814 201 RNG---------LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQG 271 (729)
Q Consensus 201 ~~~---------~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (729)
... -.++ ..-..+.......|..++|..+|++-.+ |..|=..|-..|.+++|.++-+.--.
T Consensus 785 ~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR 854 (1416)
T KOG3617|consen 785 NARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR 854 (1416)
T ss_pred hhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc
Confidence 211 0122 2222344445678899999999998876 44555667778999999988755322
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----------hCCC---------ccChhhHHHHHHHHHhCCCHHHH
Q 004814 272 RGCSPNGVTYNVLITGFSRNGELEQARGLIRDML----------KLGL---------KVSAHSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 272 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~~~---------~~~~~~~~~li~~~~~~g~~~~A 332 (729)
- . =..||.....-+...++.+.|++.|++.- +..+ ..|...|.-....+...|+.+.|
T Consensus 855 i--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 855 I--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred e--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 2 1 22356566666677788888888776532 1110 11333444444455567777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004814 333 LNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSR 412 (729)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 412 (729)
+.+|..... |-+++...|-.|+.++|-++-++- .|......+.+.|-..|++.+|...|-+...
T Consensus 932 l~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa- 995 (1416)
T KOG3617|consen 932 LSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA- 995 (1416)
T ss_pred HHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-
Confidence 777776553 456777777788888887765543 4666677788888888888888888876543
Q ss_pred CCCCCHhhHHHHHHHH-------------HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 413 NLVPTVVTYNTLIDGL-------------CRYG--DLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFN 477 (729)
Q Consensus 413 ~~~~~~~~~~~ll~~~-------------~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (729)
+...|+.| ...| +.-.|-++|++. |.. ....+..|-+.|.+.+|+++--
T Consensus 996 --------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen 996 --------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred --------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHH
Confidence 22222221 1111 222333333332 100 1112234666777766665421
Q ss_pred --------HHHHC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 478 --------EMLRK--GLQPDRFAYTTQIAGELKLGDTSEAYRLQEEM 514 (729)
Q Consensus 478 --------~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~ 514 (729)
+++.. ....|+...+.-...++...++++|..++-..
T Consensus 1060 ~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1060 RTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred hhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 12222 22345566666666677777777777665443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.3e-08 Score=96.93 Aligned_cols=422 Identities=14% Similarity=0.062 Sum_probs=226.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCH
Q 004814 250 LDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLL 329 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 329 (729)
.++.+..|+++.|...|.+..... ++|.+.|..=..+|.+.|++++|.+=-.+-++..+ .=...|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p-~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP-DWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC-chhhHHHHhHHHHHhcccH
Confidence 467788999999999999988873 55888898889999999999999887777776542 2356788899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHCCCCCCH--------hHHHHHHHHHHHc---
Q 004814 330 VEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFE--MLRKNVIPDI--------ISYNTLLYGYCRS--- 396 (729)
Q Consensus 330 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~--------~~~~~li~~~~~~--- 396 (729)
++|+.-|.+-++.... |...++.+..++.... .+.+.|.. +. .+...+. ..|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~---~~~~~~~~p~~~-~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDY---AADQLFTKPYFH-EKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHH---HhhhhccCcHHH-HHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 9999999998886433 6677777777761110 01111100 00 0000111 1122222211110
Q ss_pred -------CCHHHHHHHHHHHh-----hCC-------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHH
Q 004814 397 -------GNIGEAFLLFDELR-----SRN-------LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMIN-QGILPDVITY 456 (729)
Q Consensus 397 -------g~~~~A~~l~~~m~-----~~~-------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 456 (729)
.++..|.-.+.... ..+ ..|. .+. ........++.+ .....-..-.
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~---~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQE---HNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------ccc---CCCCCccchhHHHHHHHHhhhHH
Confidence 00111111110000 000 0000 000 000000000000 0000011223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HH
Q 004814 457 TIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYN-------VL 529 (729)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~-------~l 529 (729)
..+.++..+..+++.|++-+....+.. -+..-++....+|...|.+.++....+..++.|.. ...-|+ .+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 445555566666666666666666553 23334444445666666666666555555554311 111122 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCC
Q 004814 530 VHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTL-VTYTVLIHAHAARGR 608 (729)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 608 (729)
..+|.+.++++.|+..|.+.+.....|+. ..+....+++....+...-.+ |.. .---.-+..+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccC
Confidence 33555566777777777776654333322 122233444444443333222 221 111122455667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 609 LELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
+..|++.|.++++.. +-|...|....-+|.+.|.+..|++-.+..++.+ ++....|.--+.++....+|++|.+.|++
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777764 3366677777777777777777777777777653 33344555556666667777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHhhhc
Q 004814 689 MLDREIEPDYCTHSALLLKQLD 710 (729)
Q Consensus 689 m~~~~~~pd~~~~~~ll~~~l~ 710 (729)
.+ ...|+..-+...+..++.
T Consensus 452 al--e~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 452 AL--ELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HH--hcCchhHHHHHHHHHHHH
Confidence 77 455655544444344444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-07 Score=95.35 Aligned_cols=239 Identities=15% Similarity=0.033 Sum_probs=114.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.|-.+++.|...|+++.|.++|-+.-. ++--+..|.+.|++.+|.++-.+.- |.......|.+-..-+-
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~---------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADL---------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLD 835 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcch---------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHH
Confidence 344555555666666665555543211 1334555555666655555544432 21223334444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
+.|++.+|.++|-.+. .|+ ..|.+|-+.|..+...++.++-.- ..-..|...+..-|...|++.+|..
T Consensus 836 ehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred hhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHH
Confidence 5555555555543321 122 224455555555555554443211 1123455556666777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------HHCCCCCCHh--------HHHHHHHHHH
Q 004814 335 LEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEM------------LRKNVIPDII--------SYNTLLYGYC 394 (729)
Q Consensus 335 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~~~~~~~~--------~~~~li~~~~ 394 (729)
-|-+..+ |.+-+.+|...+.+++|.++-+.- ..+.+-.+.. ....-++..+
T Consensus 904 ~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~ 974 (1636)
T KOG3616|consen 904 HFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAA 974 (1636)
T ss_pred HHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhh
Confidence 6654432 445556666666666665543321 0000001110 0111223334
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 395 RSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQG 448 (729)
Q Consensus 395 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 448 (729)
.++.++-|+++-+-..+.. .|. +...+..-+-..|++++|.+.+-+.++.+
T Consensus 975 d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 975 DNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred cccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 4455555555444333321 112 22233444566788888888888777653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-06 Score=92.33 Aligned_cols=321 Identities=13% Similarity=0.079 Sum_probs=194.3
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCC-cchHHHHHHHH
Q 004814 102 EKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSS-CVSIKILDLLL 180 (729)
Q Consensus 102 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l~ 180 (729)
|+.+.|++-.+.+. +...|..|.+++.+.++++-|.-.+.-|-....- ..+-..-.+. ....+ .+
T Consensus 742 G~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga---RAlR~a~q~~~e~eak----vA 807 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA---RALRRAQQNGEEDEAK----VA 807 (1416)
T ss_pred ccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH---HHHHHHHhCCcchhhH----HH
Confidence 55677766555553 5578999999999998888776544332211100 0111000111 01111 12
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 004814 181 LIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ 260 (729)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (729)
-.-...|++++|..+|++..+. ..+=+.|...|.+++|.++-+.-.+.. -..||.....-+-..++.+
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHH
Confidence 2234678999999999988874 234456778899999988876544322 2345555566666678888
Q ss_pred HHHHHHHHH----------HhCCC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 004814 261 EALELLWEM----------QGRGC---------SPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIIC 321 (729)
Q Consensus 261 ~A~~~~~~m----------~~~~~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 321 (729)
.|++.|++. ..... ..|...|..-..-+-..|+++.|+.+|....+ |.++++
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 888877653 22100 12334444455555667999999999887654 677888
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc-----
Q 004814 322 GYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRS----- 396 (729)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 396 (729)
..|-.|+.++|-++-++-. |....-.|...|-..|++.+|...|.+... +...|+.|-.+
T Consensus 947 I~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred eEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHH
Confidence 8899999999998876532 666666788999999999999999877653 22333322211
Q ss_pred ----------CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHC--CCCCCHHHH
Q 004814 397 ----------GNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKE--------NMINQ--GILPDVITY 456 (729)
Q Consensus 397 ----------g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~--------~~~~~--~~~~~~~~~ 456 (729)
.+.-.|-++|++... -+...+..|-+.|.+.+|+++-= +++.. ....|+...
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 122233334433210 11223345667777766665421 12222 234567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 457 TIMVNGSCKMGNLSMAREFFNEML 480 (729)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~ 480 (729)
+...+.++...++++|..++-...
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 777777888888888887765544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-08 Score=102.56 Aligned_cols=237 Identities=16% Similarity=0.032 Sum_probs=150.3
Q ss_pred CCHHHHHHHHHHHHHCCC-CCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 467 GNLSMAREFFNEMLRKGL-QPD--RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEAN 543 (729)
Q Consensus 467 g~~~~A~~~~~~~~~~g~-~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 543 (729)
+..+.++..+.+++.... .|+ ...+......+...|+.++|...|++.++.. |.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345556666666664321 111 2345555666777777777777777777764 556778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004814 544 ELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKG 623 (729)
Q Consensus 544 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 623 (729)
..|++.++..+. +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...+++....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 888888876433 45677777778888888888888888888763 33222222222334567788888888766543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C
Q 004814 624 IRPNVITYNALINGLCRLRRIDQAYGLFIDMEEE---G--I-LPNKYTYTILINENCNAGNWQEALRLYKEMLDREIE-P 696 (729)
Q Consensus 624 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g--~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p 696 (729)
..|+... ........|+..++ +.++.+.+. . + +.....|..++..+.+.|++++|+..|++++ ... |
T Consensus 195 ~~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al--~~~~~ 268 (296)
T PRK11189 195 LDKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL--ANNVY 268 (296)
T ss_pred CCccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCc
Confidence 2233221 12233345665544 344444421 0 0 1123578888889999999999999999998 444 4
Q ss_pred CHHHHHHHHHhhhccchh
Q 004814 697 DYCTHSALLLKQLDKDYK 714 (729)
Q Consensus 697 d~~~~~~ll~~~l~~~g~ 714 (729)
|.+.++..+++.....+.
T Consensus 269 ~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 269 NFVEHRYALLELALLGQD 286 (296)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 777777765655544443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-08 Score=102.09 Aligned_cols=218 Identities=11% Similarity=-0.033 Sum_probs=138.8
Q ss_pred ChHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHH
Q 004814 103 KPRIALRFFRWVETQPGVKR--DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLL 180 (729)
Q Consensus 103 ~~~~al~~f~~~~~~~~~~~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 180 (729)
..+.++.-|..+.......+ ....|..++.++.+.|++++|...|+++++.+|+ ++.+|..++
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---------------~~~a~~~lg 105 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---------------MADAYNYLG 105 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---------------CHHHHHHHH
Confidence 34666666666654322222 2456778888888889888888888888888776 467888888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 004814 181 LIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ 260 (729)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (729)
..|...|++++|...|+++++..+. +..++..+..++...|++++|.+.|+...+.. |+..............++.+
T Consensus 106 ~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~ 182 (296)
T PRK11189 106 IYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPK 182 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHH
Confidence 8888888888888888888887654 56677778888888888888888888888764 33221222222233456788
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC---CC---ccChhhHHHHHHHHHhCCCHHHHHH
Q 004814 261 EALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKL---GL---KVSAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 261 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
+|...|.+.... ..|+...+ . ......|+..++ +.+..+.+. .+ +....+|..+...+.+.|++++|..
T Consensus 183 ~A~~~l~~~~~~-~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 183 QAKENLKQRYEK-LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred HHHHHHHHHHhh-CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888665543 23332221 1 222334555443 344444321 11 1123456666667777777777777
Q ss_pred HHHHHHHCC
Q 004814 335 LEEEMVTRG 343 (729)
Q Consensus 335 ~~~~m~~~g 343 (729)
.|++..+.+
T Consensus 258 ~~~~Al~~~ 266 (296)
T PRK11189 258 LFKLALANN 266 (296)
T ss_pred HHHHHHHhC
Confidence 777766654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.4e-11 Score=83.29 Aligned_cols=49 Identities=49% Similarity=0.982 Sum_probs=29.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004814 241 PSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFS 289 (729)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 289 (729)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||++++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666666566666666666655554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-08 Score=105.30 Aligned_cols=128 Identities=21% Similarity=0.120 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--CC-CH
Q 004814 493 TQIAGELKLGDTSEAYRLQEEMLAK-----G--FPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDG----F--IP-DH 558 (729)
Q Consensus 493 ~li~~~~~~g~~~~A~~l~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~ 558 (729)
.+...+...+++++|..+++...+. | .+.-..+++.|...|.+.|++++|.+++++++... . .+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 3334445555555555555433221 1 01113466777777777777777777777665431 1 11 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004814 559 ITYTSIIHASLEMGDLRRGRDLFNNMLRK----G--LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (729)
..++.+...|.+.+++++|.++|.+.... | .+....+|..|+..|.+.|++++|.++.+...
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34566666666666766666666654321 1 11123355555555666666666655555544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-08 Score=88.84 Aligned_cols=200 Identities=17% Similarity=0.044 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
......|.-.|...|+...|..-++++++..+. +..+|..+...|.+.|..+.|.+-|++..+.. +.+-.+.|-....
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence 456677888999999999999999999998765 67788889999999999999999999998876 5677788999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHH
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSP-NGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVE 331 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 331 (729)
+|.+|++++|.+.|++......-+ -..+|..+.-...+.|+++.|...|++.++... ....+...+.....+.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchH
Confidence 999999999999999988753222 234677777777788999999999988888753 245566677777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 332 ALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 332 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 376 (729)
|...++....+|. ++..+.-..|..-...|+.+.|-+.=..+..
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888777777665 5666666667777777776666554444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-08 Score=88.31 Aligned_cols=208 Identities=16% Similarity=0.058 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004814 491 YTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLE 570 (729)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 570 (729)
...+..+|...|+...|..-+++.++.+ |.+..+|..+...|.+.|..+.|.+.|++.++..+. +..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3344556777777777777777777764 556667777777777888888888888877776533 56677777777777
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 571 MGDLRRGRDLFNNMLRK-GLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYG 649 (729)
Q Consensus 571 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 649 (729)
.|++++|...|++.... ....-..+|..++-+..+.|+.+.|...|++.++... -.+.....+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHH
Confidence 78888888888777764 1112245677777777778888888888888777532 234456677777777788888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 650 LFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 650 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
+++.....+ .++..+....|..-...|+-+.|-++=.++. ...|....+..+
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~--r~fP~s~e~q~f 246 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ--RLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH--HhCCCcHHHHhH
Confidence 777777765 4677777777777777787777776655555 445555544443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-07 Score=92.64 Aligned_cols=421 Identities=14% Similarity=0.053 Sum_probs=232.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHh
Q 004814 131 LEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKN 210 (729)
Q Consensus 131 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 210 (729)
.......|+++.|...|..++..+|. +..+|..=..+|+..|++++|++--.+.++..+. =...
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~---------------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kg 72 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT---------------NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKG 72 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC---------------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhH
Confidence 34566789999999999999988776 3445555667889999999999888888876543 3567
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----
Q 004814 211 CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLI----- 285 (729)
Q Consensus 211 ~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li----- 285 (729)
|+....++.-.|++++|+.-|.+-++.. +.|...++.+.+++.- +.. +.+.|. +...|..+.
T Consensus 73 y~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~--~~~-~~~~~~---------~p~~~~~l~~~p~t 139 (539)
T KOG0548|consen 73 YSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLE--DYA-ADQLFT---------KPYFHEKLANLPLT 139 (539)
T ss_pred HHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhH--HHH-hhhhcc---------CcHHHHHhhcChhh
Confidence 8889999999999999999999988875 5667777777777611 111 111110 111111111
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHH-----HHCC-------CCCCHHHHHH
Q 004814 286 TGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEM-----VTRG-------VAPTLATYNI 353 (729)
Q Consensus 286 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~g-------~~p~~~~~~~ 353 (729)
+.+... .+.....+..+.+ |+ -+.+|..-.++..|.-.+... ...| ..|...
T Consensus 140 ~~~~~~----~~~~~~l~~~~~~--p~------~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~---- 203 (539)
T KOG0548|consen 140 NYSLSD----PAYVKILEIIQKN--PT------SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQ---- 203 (539)
T ss_pred hhhhcc----HHHHHHHHHhhcC--cH------hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccc----
Confidence 111111 1111111111111 00 011111111111111111100 0000 111100
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 004814 354 LIYGLCKWGR-VSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYG 432 (729)
Q Consensus 354 li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g 432 (729)
-....-..++ .++.+. . --....-.+.++..+..+++.|.+-+....+.. -+..-++....+|...|
T Consensus 204 ~~~~~~~~~d~~ee~~~-k---------~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~ 271 (539)
T KOG0548|consen 204 EHNGFPIIEDNTEERRV-K---------EKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERG 271 (539)
T ss_pred cCCCCCccchhHHHHHH-H---------HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhcc
Confidence 0000000000 000000 0 011223445666666667777777776666553 34444555566677777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 004814 433 DLEVAQQLKENMINQGILPDVITYTI-------MVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTS 505 (729)
Q Consensus 433 ~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 505 (729)
.+.+........++.|.. ...-|+. +..+|.+.++++.|+..|.+.+.....|+. ..+....+
T Consensus 272 ~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~E 341 (539)
T KOG0548|consen 272 KYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAE 341 (539)
T ss_pred HHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHH
Confidence 776666666666555422 2222222 333555667778888888776665333322 22333344
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 506 EAYRLQEEMLAKGFPPD-LITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNM 584 (729)
Q Consensus 506 ~A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (729)
++.+..+...-.+ |. ..-...-...+.+.|++..|+..|.++++..+ .|...|....-+|.+.|.+..|++-.+..
T Consensus 342 k~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 342 KALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444333222 22 11122235667778888888888888888763 37778888888888888888888887777
Q ss_pred HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 585 LRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 585 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
++.+ ++....|..-+.++....++++|.+.|++.++.
T Consensus 419 ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 419 IELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7764 444556666666666777888888888888775
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=80.68 Aligned_cols=49 Identities=41% Similarity=0.734 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 004814 276 PNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324 (729)
Q Consensus 276 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 324 (729)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-05 Score=84.12 Aligned_cols=531 Identities=15% Similarity=0.098 Sum_probs=284.9
Q ss_pred HHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 004814 134 LIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNR 213 (729)
Q Consensus 134 l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 213 (729)
....++++.|.....+++++.|+.. ...++.. -...+.|+.++|..+++.....+.. |..+...
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~-------------~a~vLka--Lsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~ 82 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNAL-------------YAKVLKA--LSLFRLGKGDEALKLLEALYGLKGT-DDLTLQF 82 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcH-------------HHHHHHH--HHHHHhcCchhHHHHHhhhccCCCC-chHHHHH
Confidence 3456788999999999998887631 1222222 2357999999999999888777666 8888889
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-
Q 004814 214 IIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNG- 292 (729)
Q Consensus 214 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g- 292 (729)
+-.+|.+.|+.++|..+|++.... -|+......+..+|.+.+++.+-.+.--+|-+. ++-+...+=++++.+.+.-
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhcc
Confidence 999999999999999999999876 477888888888999988887655554444443 3334455545555544321
Q ss_pred ---------CHHHHHHHHHHHHhCC-CccChhhHHHHHHHHHhCCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 293 ---------ELEQARGLIRDMLKLG-LKVSAHSYNPIICGYSEKGLLVEALNLEE-EMVTRGVAPTLATYNILIYGLCKW 361 (729)
Q Consensus 293 ---------~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~ 361 (729)
-..-|.+.++.+.+.+ .--+..-...-...+...|++++|++++. ...+.-...+...-+.-++.+...
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 1234666677776654 11122222233445567888999999983 333333333445555667888889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----------------HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 004814 362 GRVSDARHRFFEMLRKNVIPDIISYNTLLYGYC----------------RSGNIGEAFLLFDELRSRNLVPTVVTYNTLI 425 (729)
Q Consensus 362 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----------------~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll 425 (729)
+++.+-.++-.++..+|. |. |...++.++ ..+..+...+..++..... ....|-+-+
T Consensus 240 ~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~l 312 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARL 312 (932)
T ss_pred cChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHH
Confidence 999999999999888873 42 333222211 1122222222222222211 112233333
Q ss_pred HHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-------hHHHHH
Q 004814 426 DGLC---RYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRF-------AYTTQI 495 (729)
Q Consensus 426 ~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-------~~~~li 495 (729)
.+.. .-|+.+++.-.|-+- -|-.| .|..=+..|...=..+.-..++...... .++.. .+...+
T Consensus 313 el~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l 385 (932)
T KOG2053|consen 313 ELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVL 385 (932)
T ss_pred HHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHH
Confidence 3332 335666554443222 12111 1222222222222222223333332221 11111 011111
Q ss_pred HHHHhcC-----CHHHHHHHHHHH---HHCC------CCCC---------HHHHHHHHHHHHhcCCHH---HHHHHHHHH
Q 004814 496 AGELKLG-----DTSEAYRLQEEM---LAKG------FPPD---------LITYNVLVHGLCKLGSLE---EANELLRKM 549 (729)
Q Consensus 496 ~~~~~~g-----~~~~A~~l~~~~---~~~~------~~~~---------~~~~~~li~~~~~~g~~~---~A~~~~~~~ 549 (729)
....-.| .-+.-...+.+. .++| .-|. .-+-+.|++.+-+.++.. +|+-+++.-
T Consensus 386 ~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 1111111 111112222111 1112 1111 123456677777777644 455555555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H
Q 004814 550 VGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN-V 628 (729)
Q Consensus 550 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~ 628 (729)
+... +.|..+--.+++.|+-.|-...|.++|+.+--+++..|..-|. +..-+...|++..+...++...+- ...+ .
T Consensus 466 lt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~k 542 (932)
T KOG2053|consen 466 LTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLK 542 (932)
T ss_pred hhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-Hhhhhh
Confidence 5443 2345555567778888888888888888776666665655443 234456677888888877776653 1111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHH
Q 004814 629 ITYNALINGLCRLRRIDQAYGLF---IDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEP--DYCTHSA 703 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~---~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--d~~~~~~ 703 (729)
.+-..+..+| +.|.+.+..++. +++....-.-...+-+..++.++..++.++-...++.|. +.| |...|..
T Consensus 543 E~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~---l~~~e~~I~w~~ 618 (932)
T KOG2053|consen 543 ETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK---LPPSEDRIQWVS 618 (932)
T ss_pred hhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc---cCcchhhccccc
Confidence 1222333333 455655544432 222221101112233455666777788877777777773 444 3344544
Q ss_pred H
Q 004814 704 L 704 (729)
Q Consensus 704 l 704 (729)
+
T Consensus 619 L 619 (932)
T KOG2053|consen 619 L 619 (932)
T ss_pred c
Confidence 4
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-06 Score=86.39 Aligned_cols=248 Identities=20% Similarity=0.179 Sum_probs=156.1
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 392 GYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSM 471 (729)
Q Consensus 392 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (729)
.+...|+++.|+.-|-+... ....+.+.....++.+|+.+++.+..+. .-..-|..+.+.|+..|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHH
Confidence 34455666666655543321 1223455566777888888888777653 233456667778888888888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004814 472 AREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVG 551 (729)
Q Consensus 472 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 551 (729)
|.++|.+. ..++..|..|.+.|+++.|.++-++.... ......|-+-..-+-+.|++.+|.+++-.+.
T Consensus 784 ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 784 AEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 88887543 23456677888888888888877665432 3344556666666777888888887774432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004814 552 DGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITY 631 (729)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 631 (729)
.|+. .|..|-+.|..+..+++.++-... .-..|...+..-|...|+...|..-|-++.+ |
T Consensus 852 ---~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~ 911 (1636)
T KOG3616|consen 852 ---EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------F 911 (1636)
T ss_pred ---CchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------H
Confidence 3443 456778888888777776654322 1234556667778888888888877765543 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 632 NALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 632 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
.+.+..|...+.+++|.++-+. .| -.|..-....+++-.-.| +.|++++++
T Consensus 912 kaavnmyk~s~lw~dayriakt---eg-g~n~~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRIAKT---EG-GANAEKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHHHhc---cc-cccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence 5666778888888888776542 22 234444444444433333 557777665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-07 Score=94.09 Aligned_cols=203 Identities=9% Similarity=-0.010 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
....|..+...+...|+.+++...+.+.....+... ............+...|++++|...++++.+.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA------------TERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566666666666777776665555554433210 01222333445566777888888888887776
Q ss_pred CCCCChHhHHHHHHHHH----HCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 004814 203 GLLPDVKNCNRIIKVLR----DNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNG 278 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 278 (729)
.+. |...+.. ...+. ..+..+.+.+.+..... ..+........+...+...|++++|.+.+++..+.. +.+.
T Consensus 73 ~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~ 148 (355)
T cd05804 73 YPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDA 148 (355)
T ss_pred CCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 543 3333332 11222 23444444444443111 112223344455566667777777777777777652 3345
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc-cCh--hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004814 279 VTYNVLITGFSRNGELEQARGLIRDMLKLGLK-VSA--HSYNPIICGYSEKGLLVEALNLEEEMVT 341 (729)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (729)
..+..+...+...|++++|...+++..+.... ++. ..|..+...+...|++++|..++++...
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 56666677777777777777777776654321 121 2344566666777777777777776643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.8e-07 Score=92.58 Aligned_cols=200 Identities=11% Similarity=-0.018 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CChHh-HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL-PDVKN-CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTML 250 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 250 (729)
...+..+...|...|+.+++...+.+..+.... ++... .......+...|++++|.+.+++..+.. |.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 345556667777778888887777776654332 22222 2223445677888999999988887754 444444442 2
Q ss_pred HHHH----hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 004814 251 DSFC----KEGEMQEALELLWEMQGRGCSPN-GVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE 325 (729)
Q Consensus 251 ~~~~----~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 325 (729)
..+. ..+..+.+.+.+... .+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 2222 234555555555441 112333 3344455667778888888888888888875 3356677778888888
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 326 KGLLVEALNLEEEMVTRGVA-PTL--ATYNILIYGLCKWGRVSDARHRFFEMLRK 377 (729)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~-p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 377 (729)
.|++++|...+++....... |+. ..|..+...+...|++++|..++++....
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88888888888887764321 222 23556777788888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-07 Score=84.37 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=141.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP 206 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 206 (729)
+++.+..|.+..++..|++++..-.++.|. +..-+..|..+|.+..++..|...++++-..- |
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~---------------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P 75 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR---------------SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--P 75 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--h
Confidence 345666678888899999988887777664 46667788999999999999999999998764 4
Q ss_pred ChHhHHH-HHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 207 DVKNCNR-IIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSF--CKEGEMQEALELLWEMQGRGCSPNGVTYNV 283 (729)
Q Consensus 207 ~~~~~~~-ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 283 (729)
...-|.. -...+.+.+.+.+|+.+...|... ++...-..-+.+. ...+++..+..+.++....| +..+.+.
T Consensus 76 ~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in 149 (459)
T KOG4340|consen 76 ELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQIN 149 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhcc
Confidence 4433432 467788899999999999988752 3332222223332 24678888888888876432 4455566
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 004814 284 LITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVA 345 (729)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (729)
......+.|++++|.+-|+...+.+.-....+|+..+. ..+.|+++.|++...+++++|+.
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 66667789999999999999988654445566765544 45678899999999999988754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.7e-07 Score=82.01 Aligned_cols=291 Identities=13% Similarity=0.108 Sum_probs=197.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHH
Q 004814 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNT-MLDSFC 254 (729)
Q Consensus 176 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~ 254 (729)
|+..+..+.+..++++|++++..-.+..+. +......+..+|....++..|-..|+++... .|...-|.. -.+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 445555667889999999999998887643 6666778888999999999999999999875 355444432 346667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLI--TGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 332 (729)
+.+.+..|+.+...|... |+...-..-+ ....+.+++..++.+.++....| +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 889999999999888653 2222211112 23345788888988888765433 566777777788899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------CHh---------------
Q 004814 333 LNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP-------------DII--------------- 384 (729)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~--------------- 384 (729)
.+-|+...+-|--.....|+..+ ++.+.|+++.|++...+++++|++. |+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 99999998854333566777544 4557899999999999999876531 211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004814 385 SYNTLLYGYCRSGNIGEAFLLFDELRSRN-LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGS 463 (729)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (729)
.+|.-...+.+.|+++.|.+.+-.|..+. -..|++|...+.-. -..+++.+..+-+.-++..++ -...|+..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 11222223456777888877777775432 23456665544322 123455555555666666543 3456777777778
Q ss_pred HhcCCHHHHHHHHHH
Q 004814 464 CKMGNLSMAREFFNE 478 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~ 478 (729)
|+..-++.|-+++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 888877777777644
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-05 Score=92.94 Aligned_cols=373 Identities=13% Similarity=0.000 Sum_probs=225.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 004814 247 NTMLDSFCKEGEMQEALELLWEMQGRGCSPNG-VTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE 325 (729)
Q Consensus 247 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 325 (729)
......+...|++.+|.......... +.. .............|+++.+...++.+.......+..........+..
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 33445566677777777655443211 100 11112233445567887777777665221111122333444555667
Q ss_pred CCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHH
Q 004814 326 KGLLVEALNLEEEMVTRGV------APT--LATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDI----ISYNTLLYGY 393 (729)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~------~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~ 393 (729)
.|++++|...+......-. .+. ......+...+...|++++|...+++........+. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 8899999988887754311 111 112223345566789999999999887763221222 2345566677
Q ss_pred HHcCCHHHHHHHHHHHhhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHH
Q 004814 394 CRSGNIGEAFLLFDELRSR----NL-VPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ----GIL--P-DVITYTIMVN 461 (729)
Q Consensus 394 ~~~g~~~~A~~l~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~ 461 (729)
...|++++|...+++.... |. .....++..+...+...|+++.|...+++.... +.. + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 8899999999988887542 11 111234455667788899999999988877652 211 1 2234455666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--CCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHH
Q 004814 462 GSCKMGNLSMAREFFNEMLRKG--LQPD--RFAYTTQIAGELKLGDTSEAYRLQEEMLAKG--FPPDLI--TY--NVLVH 531 (729)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~g--~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~--~~--~~li~ 531 (729)
.+...|++++|...+.+..... ..+. ...+..+...+...|+.++|...++...... ...... .. ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 7777899999999988876531 1111 2333445567778999999999888875421 111111 10 11223
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHH
Q 004814 532 GLCKLGSLEEANELLRKMVGDGFIPDH---ITYTSIIHASLEMGDLRRGRDLFNNMLRK----GLSPT-LVTYTVLIHAH 603 (729)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~ 603 (729)
.+...|+.+.|...+............ ..+..+..++...|+.++|...+++.... |...+ ..++..+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 445578899998888776542211111 11345667788899999999999887653 32222 34566777788
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 004814 604 AARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 604 ~~~g~~~~A~~~~~~~~~~ 622 (729)
.+.|+.++|...+.++.+.
T Consensus 742 ~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999875
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.4e-05 Score=80.75 Aligned_cols=523 Identities=14% Similarity=0.105 Sum_probs=295.5
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHH
Q 004814 102 EKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLL 181 (729)
Q Consensus 102 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 181 (729)
++.+.|+.-...+.++++-.+...++.++ ++.+.|+.++|..+++..-...++ +..+...+..
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~---------------D~~tLq~l~~ 85 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT---------------DDLTLQFLQN 85 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC---------------chHHHHHHHH
Confidence 46788998888888776433333334333 367899999999877765444433 5667888999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 182 IYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVK----AREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
+|...|..++|..+|+++.... |+......+..+|.+.+.+.+ |.++|+.. +-+.+.+=++++...+.-
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-----pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-----PKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CcccchHHHHHHHHHHhc
Confidence 9999999999999999999865 567777788888888887765 45555532 445555545555555421
Q ss_pred C----------HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHH-HHHHhCCCccChhhHHHHHHHHHh
Q 004814 258 E----------MQEALELLWEMQGRG-CSPNGVTYNVLITGFSRNGELEQARGLI-RDMLKLGLKVSAHSYNPIICGYSE 325 (729)
Q Consensus 258 ~----------~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~ 325 (729)
. ..-|.+.++.+.+.+ ---+..-...-...+...|++++|.+++ ....+.-...+...-+.-+..+..
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 223566677776654 1112222233345566788999999998 344444334445555667788889
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 004814 326 KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK----------------WGRVSDARHRFFEMLRKNVIPDIISYNTL 389 (729)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 389 (729)
.+++.+-.++-.++..+|.. | |...++.+++ .+..+...+...+.... .....|-+-
T Consensus 239 l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~---~~Rgp~LA~ 311 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGS---KSRGPYLAR 311 (932)
T ss_pred hcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcc---cccCcHHHH
Confidence 99999999999999988754 3 3333332221 12233333333333322 122334444
Q ss_pred HHHHH---HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------HHHH
Q 004814 390 LYGYC---RSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDV---------ITYT 457 (729)
Q Consensus 390 i~~~~---~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~ 457 (729)
+.++. .-|+.+++.-.|-+ +.|..| .|..=+..|...=..+.-..++....... ++. .+.+
T Consensus 312 lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~ 384 (932)
T KOG2053|consen 312 LELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCV 384 (932)
T ss_pred HHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHH
Confidence 44444 34777776654432 222111 11111111111112222233333322211 111 1111
Q ss_pred HHHHHHHhcC-----CHHHHHHHHHHHH---HCC------CCCCHh---------hHHHHHHHHHhcCCHH---HHHHHH
Q 004814 458 IMVNGSCKMG-----NLSMAREFFNEML---RKG------LQPDRF---------AYTTQIAGELKLGDTS---EAYRLQ 511 (729)
Q Consensus 458 ~l~~~~~~~g-----~~~~A~~~~~~~~---~~g------~~~~~~---------~~~~li~~~~~~g~~~---~A~~l~ 511 (729)
..+..+ .| +.+.-..+++++. ++| +.|... +.+.++..+.+.++.. +|+-++
T Consensus 385 l~~~rl--~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LL 462 (932)
T KOG2053|consen 385 LLLLRL--LGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLL 462 (932)
T ss_pred HHHHHH--hhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 111111 12 1223333332222 122 223322 3345667788877754 566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 512 EEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSP 591 (729)
Q Consensus 512 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 591 (729)
+...... +.|..+--.+|..|+-.|-+..|.++++.+--..+..|...|. +..-+...|++..+...++...+.--..
T Consensus 463 E~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~ 540 (932)
T KOG2053|consen 463 ENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSS 540 (932)
T ss_pred HHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhh
Confidence 6666553 5566677788999999999999999999887666665655443 3345667889999999998877641011
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYF---SEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILP--NKYTY 666 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~ 666 (729)
-..+-..+..+| +.|.+.+..++. +++...-......+=+..++..+..++.++-...+..|. ++| |...|
T Consensus 541 ~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~---l~~~e~~I~w 616 (932)
T KOG2053|consen 541 LKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK---LPPSEDRIQW 616 (932)
T ss_pred hhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc---cCcchhhccc
Confidence 122222333333 456665554433 333322111122234667777888888888888877776 333 33345
Q ss_pred HHHH
Q 004814 667 TILI 670 (729)
Q Consensus 667 ~~l~ 670 (729)
..+.
T Consensus 617 ~~L~ 620 (932)
T KOG2053|consen 617 VSLS 620 (932)
T ss_pred cccc
Confidence 5554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-05 Score=75.64 Aligned_cols=320 Identities=14% Similarity=0.054 Sum_probs=192.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+-++.-.--+...+...|.+..|+.-+..+++.+|. +...+..-+..|...|+-.-|+.-+.+.+
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~---------------~Y~aifrRaT~yLAmGksk~al~Dl~rVl 99 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN---------------NYQAIFRRATVYLAMGKSKAALQDLSRVL 99 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch---------------hHHHHHHHHHHHhhhcCCccchhhHHHHH
Confidence 456666777888888899999999999999988887 33344445667888888899999999988
Q ss_pred HCCCCCChHhH-HHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004814 201 RNGLLPDVKNC-NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGV 279 (729)
Q Consensus 201 ~~~~~~~~~~~-~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 279 (729)
+. .||-..- ..-..++.++|.+++|..=|+.+++.. |+..+- ..++.+.--.++-.
T Consensus 100 el--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~---------------- 156 (504)
T KOG0624|consen 100 EL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW---------------- 156 (504)
T ss_pred hc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------
Confidence 85 4665432 234567889999999999999988764 322111 01111100000000
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLC 359 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 359 (729)
.....+..+...|+...|+.....+++.. +.|...|..-..+|...|++..|+.-++...+..-. +..++--+-..+.
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y 234 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLY 234 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHH
Confidence 01111222334455555555555555442 335555555555555555555555544444333211 3334444445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHH----H---------HHHHHHcCCHHHHHHHHHHHhhCCCCCCHhh---HHH
Q 004814 360 KWGRVSDARHRFFEMLRKNVIPDIISYNT----L---------LYGYCRSGNIGEAFLLFDELRSRNLVPTVVT---YNT 423 (729)
Q Consensus 360 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l---------i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~ 423 (729)
..|+.+.++....+.++.+ ||...+.. + +......+++.++++-.+...+......... +..
T Consensus 235 ~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred hhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 5555555555555555533 33221111 0 1223456677777777777666543322333 344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 424 LIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKG 483 (729)
Q Consensus 424 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 483 (729)
+-.++...+++.+|++...++++.. +.|+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 5566677788999999999888763 4458888888888888889999999999888763
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.1e-06 Score=96.93 Aligned_cols=336 Identities=16% Similarity=0.089 Sum_probs=199.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC------CCC--HhhHHHHHHHH
Q 004814 357 GLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNL------VPT--VVTYNTLIDGL 428 (729)
Q Consensus 357 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~------~~~--~~~~~~ll~~~ 428 (729)
.+...|+++.+...+..+.......+..........+...|++++|...+.+....-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777666665542211112222233444555677888888888877644210 111 11122233445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C--CHhhHHHHHHHHH
Q 004814 429 CRYGDLEVAQQLKENMINQGILPDV----ITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQ---P--DRFAYTTQIAGEL 499 (729)
Q Consensus 429 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~---~--~~~~~~~li~~~~ 499 (729)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+.....-. + .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788888888888887763112121 23455666677788999888888877653111 1 1223444556677
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHH
Q 004814 500 KLGDTSEAYRLQEEMLAK----GFP---PDLITYNVLVHGLCKLGSLEEANELLRKMVGDG--FIP--DHITYTSIIHAS 568 (729)
Q Consensus 500 ~~g~~~~A~~l~~~~~~~----~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p--~~~~~~~l~~~~ 568 (729)
..|++++|...+++.... +.. .....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999988888776542 211 122334455666777799999988888775431 111 223444556677
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCChhhH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 004814 569 LEMGDLRRGRDLFNNMLRKGL-SPTLVTY-----TVLIHAHAARGRLELAFMYFSEMQVKGIRPNV---ITYNALINGLC 639 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~ 639 (729)
...|++++|.+.++.+..... ......+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 788999999888887754310 0111111 11223445678888888887765542111111 11345667788
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 640 RLRRIDQAYGLFIDMEEE----GILPN-KYTYTILINENCNAGNWQEALRLYKEMLDR 692 (729)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 692 (729)
..|+.++|...++++... |...+ ..++..+..++.+.|+.++|...+.++++.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999998888887652 32222 235666777888899999999999888853
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.5e-06 Score=77.44 Aligned_cols=190 Identities=14% Similarity=0.101 Sum_probs=128.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 462 GSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEE 541 (729)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 541 (729)
.+...|+...|++....+++.. ..|...+..-..+|...|++..|+.-+....+.. ..+...+.-+-..+...|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 3456788888888888888863 3466777777788888888888888887776653 4456666667777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHH
Q 004814 542 ANELLRKMVGDGFIPDHIT----YTSI---------IHASLEMGDLRRGRDLFNNMLRKGLSPTLVT---YTVLIHAHAA 605 (729)
Q Consensus 542 A~~~~~~~~~~~~~p~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~ 605 (729)
++...++.++. .||... |..+ +......+++.++.+-.+..++......... +..+-.++..
T Consensus 242 sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 242 SLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccc
Confidence 88888888875 455432 2111 1123455667777777776666531111222 2334455666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 606 RGRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 606 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
.|++.+|++...+.++. .|+ ..++.--..+|.-...+|+|+.-|+++.+.
T Consensus 320 d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77788888888887764 444 667777777787777888888888887774
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-06 Score=86.17 Aligned_cols=205 Identities=12% Similarity=0.065 Sum_probs=149.8
Q ss_pred hcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCChHhHHHH
Q 004814 136 ESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKS-MVEQCLLVFNKMLRNGLLPDVKNCNRI 214 (729)
Q Consensus 136 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (729)
..++.++|+.+..+++..+|. +..+|..-..++.+.| .+++++..++++.+..++ +..+|+..
T Consensus 49 ~~e~serAL~lt~~aI~lnP~---------------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R 112 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG---------------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHR 112 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch---------------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHH
Confidence 446778889999999988887 3556666666666667 679999999999998766 66678877
Q ss_pred HHHHHHCCCh--hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-
Q 004814 215 IKVLRDNGFS--VKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRN- 291 (729)
Q Consensus 215 l~~l~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~- 291 (729)
..++.+.|+. +++..+++++++.. +-|..+|+....++.+.|+++++++.++++.+.+.. |..+|+.....+.+.
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcc
Confidence 7777777763 67889998998876 668889999999999999999999999999987533 667777766555544
Q ss_pred --CCH----HHHHHHHHHHHhCCCccChhhHHHHHHHHHhC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 292 --GEL----EQARGLIRDMLKLGLKVSAHSYNPIICGYSEK----GLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK 360 (729)
Q Consensus 292 --g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 360 (729)
|.. +++.+...++++.. +-|..+|+-+...+... ++..+|.+.+.+....++. +......|++.|+.
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 222 45666666777665 34777888887777763 3445677777776654332 55666667777764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=0.00013 Score=74.05 Aligned_cols=151 Identities=9% Similarity=0.017 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 504 TSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIP-DHITYTSIIHASLEMGDLRRGRDLFN 582 (729)
Q Consensus 504 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (729)
.+.....++++...-...-..+|..+++.-.+..-+..|..+|.++.+.+..+ ++.++++++.-+| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44444555555444222233456666666666666777777777777766555 5556666666554 466777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 583 NMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN--VITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
.-+++- ..++.--...++-+...++-..|..+|++....++.|+ ..+|..++.-=..-|++..+.++-+++..
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 655541 23344445556666777777777777777777655554 34677777777777777777777766654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-06 Score=84.63 Aligned_cols=215 Identities=12% Similarity=0.046 Sum_probs=150.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNG-FSVKAREVYRMMGEFGIKPSIVTYNTMLDSF 253 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (729)
+++.+-.++...++.++|+...+++++..+. +..+|+....++.+.| .+++++..++++.+.+ +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 3334444556677889999999999987655 5667887777788877 5799999999998876 55666787766666
Q ss_pred HhcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhC---CC
Q 004814 254 CKEGEM--QEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEK---GL 328 (729)
Q Consensus 254 ~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~ 328 (729)
.+.|+. ++++.+++++.+.. +-|..+|+...-.+...|+++++.+.++++++.++. +..+|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 666653 67888888888763 346778888888888889999999999999987643 677777776665544 22
Q ss_pred H----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 004814 329 L----VEALNLEEEMVTRGVAPTLATYNILIYGLCKW----GRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCR 395 (729)
Q Consensus 329 ~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 395 (729)
. +++++...+++...+. |...|+-+...+... ++..+|.+.+.+....++ .+......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 2 4566666666665443 666777666666652 334556666666555443 455566666666654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=93.70 Aligned_cols=249 Identities=16% Similarity=0.092 Sum_probs=100.1
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 392 GYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSM 471 (729)
Q Consensus 392 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (729)
-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. .++.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444566666664444 222221122333444555666666555432 2222222 4444444444433332233333
Q ss_pred HHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 472 AREFFNEMLRKGLQP-DRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMV 550 (729)
Q Consensus 472 A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 550 (729)
++.-+++.......+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333322221111 1111111123344455555555554321 234444445555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004814 551 GDGFIPDHITYTSIIHAS----LEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP 626 (729)
Q Consensus 551 ~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 626 (729)
+.. .|. +...+..++ ...+.+++|..+|+++... .++++.+.+.+..++...|++++|.+++.+..+.+..
T Consensus 159 ~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~- 233 (290)
T PF04733_consen 159 QID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN- 233 (290)
T ss_dssp CCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred hcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence 432 222 122222221 1122355555555554433 2344555555555555555555555555555443211
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 004814 627 NVITYNALINGLCRLRRI-DQAYGLFIDMEE 656 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 656 (729)
++.+...++.+....|+. +.+.+++.++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 333444444444444444 334444444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.9e-07 Score=90.89 Aligned_cols=218 Identities=17% Similarity=0.130 Sum_probs=94.9
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEAL 263 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 263 (729)
.+.|.+.+|.-.|+..++..+. +..+|-.|...-...++=..|+..+++..+.. +.|..+...|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 3444445555555555444433 44444444444444444444444444444443 334444444444455555444555
Q ss_pred HHHHHHHhCCCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hCCCccChhhHHHHHHHHHhCCCHHHHHH
Q 004814 264 ELLWEMQGRGCS--------PNGVTYNVLITGFSRNGELEQARGLIRDML-KLGLKVSAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 264 ~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
+.|+......++ ++...-+. ..+.....+....++|-++. ..+..+|+.+...|.-.|--.|+++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 554444332100 00000000 00011111222233333332 22223445555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 335 LEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPD-IISYNTLLYGYCRSGNIGEAFLLFDE 408 (729)
Q Consensus 335 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~ 408 (729)
.|+..+...+. |...||-|...++...+.++|+..|.+.++.. |+ +.+...|.-.|...|.+++|.+.|-+
T Consensus 452 cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 452 CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 55555554332 44455555555555555555555555555432 22 22333344445555555555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00024 Score=72.11 Aligned_cols=428 Identities=14% Similarity=0.113 Sum_probs=242.6
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccC
Q 004814 233 MMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVS 312 (729)
Q Consensus 233 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 312 (729)
+-++.+ +-|..+|+.||+-+-.+ .++++.+.++++... ++-....|..-|..-.+.++++..+.+|.+-+..- .+
T Consensus 11 ~rie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 11 ERIEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHHhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 334444 67899999999977655 999999999999876 45566788888999999999999999999988763 35
Q ss_pred hhhHHHHHHHHHh-CCCHHH----HHHHHHHH-HHCCCCCCH-HHHHHHHHH---------HHhcCCHHHHHHHHHHHHH
Q 004814 313 AHSYNPIICGYSE-KGLLVE----ALNLEEEM-VTRGVAPTL-ATYNILIYG---------LCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 313 ~~~~~~li~~~~~-~g~~~~----A~~~~~~m-~~~g~~p~~-~~~~~li~~---------~~~~g~~~~A~~~~~~~~~ 376 (729)
...|...+.--.+ .|+... ..+.|+-. .+.|+.+-. ..|+..+.. +..+.+++..++++.+++.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6667666654332 222222 22233322 233433222 234444332 2333445555566666654
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC--
Q 004814 377 KNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMIN--QGILPD-- 452 (729)
Q Consensus 377 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~-- 452 (729)
.-+..=...|+.... .... .|..|-.-++ --+...+..|.++++++.. .|....
T Consensus 166 tPm~nlEkLW~DY~~-----------------fE~~---IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~ 223 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEA-----------------FEQE---INIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAP 223 (656)
T ss_pred CccccHHHHHHHHHH-----------------HHHH---HHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 322111122222111 1000 0111111110 0111223333444333322 111000
Q ss_pred -------------HHHHHHHHHHHHhcCCH---------HHHHHHHHHHH-HCCCCCCHhhHHH-H----HHHHHhcCC-
Q 004814 453 -------------VITYTIMVNGSCKMGNL---------SMAREFFNEML-RKGLQPDRFAYTT-Q----IAGELKLGD- 503 (729)
Q Consensus 453 -------------~~~~~~l~~~~~~~g~~---------~~A~~~~~~~~-~~g~~~~~~~~~~-l----i~~~~~~g~- 503 (729)
...|..+|..- +.+.. ....-++++.+ -.+..|+..-... . -+.+...|+
T Consensus 224 ~vp~~~T~~e~~qv~~W~n~I~wE-ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~ 302 (656)
T KOG1914|consen 224 AVPPKGTKDEIQQVELWKNWIKWE-KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDV 302 (656)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHH-hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhccc
Confidence 01122222211 11100 01111122211 1122222211100 0 012222333
Q ss_pred ------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 504 ------TSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKL---GSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDL 574 (729)
Q Consensus 504 ------~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (729)
.+++..+++..+..-...+...|..+.+---.. ...+.....+++++......-.-+|..+++.-.+..-+
T Consensus 303 ~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGl 382 (656)
T KOG1914|consen 303 PDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGL 382 (656)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhH
Confidence 456666666665543333444444444322111 13556667777776543332334677888888888889
Q ss_pred HHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 575 RRGRDLFNNMLRKGLSP-TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFID 653 (729)
Q Consensus 575 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 653 (729)
+.|..+|.++.+.+..+ ++.++++++.-|| .++.+-|.++|+--+++ ...++..-...++-+...|+-..|..+|++
T Consensus 383 kaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 383 KAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFER 460 (656)
T ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 99999999999886555 7778888888666 57889999999987775 333455557788889999999999999999
Q ss_pred HHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 654 MEEEGILPNK--YTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 654 m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+..++.|+. .+|..++.--..-|+...++++-+++.
T Consensus 461 ~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 461 VLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9998767664 589999998889999999999988876
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.2e-07 Score=90.78 Aligned_cols=252 Identities=13% Similarity=0.033 Sum_probs=153.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 004814 427 GLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSE 506 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 506 (729)
-+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++.++.... +......|...|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3456677777777777777765 446777777777777777777777777777776332 45566666677777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 507 AYRLQEEMLAKGFPPDLITYNVLV-------HGLCKLGSLEEANELLRKMV-GDGFIPDHITYTSIIHASLEMGDLRRGR 578 (729)
Q Consensus 507 A~~l~~~~~~~~~~~~~~~~~~li-------~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 578 (729)
|++.++.-+....+ -...-..-. ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|++++|.
T Consensus 372 Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 77777776554211 000000000 01111112333444444433 3343456667777777777778888888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 579 DLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI-TYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
+.|+.++... |.|..+||.|+..++...+.++|+..|.++++. .|.-+ ....|+-.|...|.+++|.+.|-+++..
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 8888777764 556777888888888777888888888888774 45432 3344555677778888887777666531
Q ss_pred ---C------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 658 ---G------ILPNKYTYTILINENCNAGNWQEALR 684 (729)
Q Consensus 658 ---g------~~p~~~~~~~l~~~~~~~g~~~~A~~ 684 (729)
+ ..++..+|.+|=.++...++.+-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 11123456665555555565554433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.4e-07 Score=88.72 Aligned_cols=256 Identities=17% Similarity=0.099 Sum_probs=148.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 004814 426 DGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTS 505 (729)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 505 (729)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.+. -.|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 33444677777775554 222221223445556677777788766543 333332 2455555555544444434555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 506 EAYRLQEEMLAKGFPP-DLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNM 584 (729)
Q Consensus 506 ~A~~l~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (729)
.++.-+++........ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555444333222 2233333334556678888888777542 25566667777888888888888888888
Q ss_pred HHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004814 585 LRKGLSPTLVTYTVLIHAHAA----RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL 660 (729)
Q Consensus 585 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 660 (729)
.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.+..+.+ +
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 7653 33 333344444332 23578888888887665 45677788888888888888888888888877654 4
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHH
Q 004814 661 PNKYTYTILINENCNAGNW-QEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 661 p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~pd~~ 699 (729)
-++.+...++-+....|+. +.+.+++.++. ...|+++
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~--~~~p~h~ 270 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLK--QSNPNHP 270 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH--HHTTTSH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH--HhCCCCh
Confidence 4555666777777777777 66677777776 3455543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.6e-06 Score=87.27 Aligned_cols=220 Identities=19% Similarity=0.200 Sum_probs=178.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 450 LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVL 529 (729)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l 529 (729)
+|--..-..+...+.+.|-...|..+++++. .+..++.+|...|+..+|..+..+.+++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3444455667788889999999999998764 4567788999999999999998888874 8899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 004814 530 VHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRL 609 (729)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 609 (729)
.+......-+++|.++.+..... .-.++.....+.++++++.+.|+.-.+.+ +--..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99888777789999888765432 11222223345789999999999888775 55677899999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 610 ELAFMYFSEMQVKGIRP-NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 610 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
..|.+.|...... .| +...||.+-.+|.+.|+..+|...+++..+.+ ..+...|...+-...+-|.+++|++.+.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999999875 44 56689999999999999999999999999876 44556676667777899999999999999
Q ss_pred HHH
Q 004814 689 MLD 691 (729)
Q Consensus 689 m~~ 691 (729)
+++
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 984
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7e-06 Score=85.96 Aligned_cols=285 Identities=15% Similarity=0.099 Sum_probs=199.0
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH---H---hccchhhhHHHhhcCCCC-cchHHHHHH
Q 004814 106 IALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETV---V---CVNMHGILDVLIGGGLSS-CVSIKILDL 178 (729)
Q Consensus 106 ~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~---~---~~~~~~~~~~l~~~~~~~-~~~~~~~~~ 178 (729)
.-.-+|..+..+.+..-...+...+.+.+.+.++-+...+-+.++ . +....++.+.+...+... +.-..+-..
T Consensus 324 ~l~p~~~~iL~q~~~~w~i~~salllr~~~E~~~~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~ 403 (777)
T KOG1128|consen 324 ELEPLTSTLLSQTEKYWSIQASALLLRFLLESTRSRTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRL 403 (777)
T ss_pred HHHHHHHHHhhccCCceeeehHHHHHHHHHHhcCccchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHH
Confidence 344678888777766667788888999888877655433332222 2 111111222221111111 122344557
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (729)
++..+...|....|+.+|++.-. |--++-+|...|+...|..+..+..+. +|+...|..++++.....-
T Consensus 404 laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 88888899999999999987643 456778888888888888888887774 7888888888888877777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 259 MQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEE 338 (729)
Q Consensus 259 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (729)
+++|.++.+....+ +-..+.....+.++++++.+.|+.-.+.. +....+|..+..+..+.+++..|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 88888888765432 22222233344788888888888877764 34567788888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004814 339 MVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 339 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 411 (729)
.....+. +...||.+-.+|.+.|+-.+|...+.+..+.+ ..+...|-..+....+.|.+++|++.+.++..
T Consensus 545 cvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 7775333 56788888888888888888888888888876 35666777777777888888888888877755
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-05 Score=88.27 Aligned_cols=232 Identities=14% Similarity=0.112 Sum_probs=137.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 004814 418 VVTYNTLIDGLCRYGDLEVAQQLKENMINQ-GIL---PDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTT 493 (729)
Q Consensus 418 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 493 (729)
...|...|.-....++.++|+++.++++.. ++. --...|.++++.-...|.-+...++|+++.+. ......|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 344444455555555555555555555542 111 11234555555555556556666666666654 112344555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 004814 494 QIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIP-DHITYTSIIHASLEMG 572 (729)
Q Consensus 494 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 572 (729)
|...|.+.+..++|.++++.|.++ +......|...++.+.+..+-+.|..++.++++.-++. ........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 666666666666666666666665 23456677777777777777777777777776653221 1233444455566777
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 004814 573 DLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV--ITYNALINGLCRLRRIDQAYGL 650 (729)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 650 (729)
+.+++..+|+..+... |-....|+..++.-.++|+.+.+..+|+++...++.|.. ..|...+..--..|+-+.+..+
T Consensus 1615 DaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 7777777777777653 445667777777777777777777777777777666543 2455555544455654444333
Q ss_pred HHH
Q 004814 651 FID 653 (729)
Q Consensus 651 ~~~ 653 (729)
=.+
T Consensus 1694 Kar 1696 (1710)
T KOG1070|consen 1694 KAR 1696 (1710)
T ss_pred HHH
Confidence 333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-06 Score=76.13 Aligned_cols=166 Identities=16% Similarity=0.088 Sum_probs=130.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004814 520 PPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVL 599 (729)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 599 (729)
|.|... ..+...+...|+-+....+........ ..|.......+....+.|++.+|...+++..... ++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 334444 556667777888888777777755442 3466677778888899999999999999988775 7889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNW 679 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 679 (729)
.-+|.+.|+.++|..-|.+..+.-. -++..++.+...|.-.|+.+.|..++......+ .-|..+-..+..+....|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh
Confidence 9999999999999999999988632 256677888888888999999999999888764 44666777788888899999
Q ss_pred HHHHHHHHHHH
Q 004814 680 QEALRLYKEML 690 (729)
Q Consensus 680 ~~A~~~~~~m~ 690 (729)
++|..+..+-+
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 99998876643
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-05 Score=87.59 Aligned_cols=204 Identities=13% Similarity=0.048 Sum_probs=104.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHH
Q 004814 243 IVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPN-----GVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYN 317 (729)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 317 (729)
...|-..+......++.++|++++++.... +.+. .-.|.++++.-...|.-+...++|+++.+.. ..-..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 445555566666666666666666665543 2111 1234444444444455555556666655532 1123455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHHc
Q 004814 318 PIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP-DIISYNTLLYGYCRS 396 (729)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 396 (729)
.|...|.+.++.++|-++++.|.+. +.-....|...+..+.++.+-+.|..++.+.++.-++. ........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 5555666666666666666666554 22244555555666666655556666665555532211 122223333444455
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 397 GNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILP 451 (729)
Q Consensus 397 g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 451 (729)
|+.+.+..+|+...... +--...|+..++.-.+.|+.+.++.+|++++..++.+
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 55555555555554432 2234455555555555555555555555555554433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.8e-06 Score=76.88 Aligned_cols=117 Identities=12% Similarity=0.119 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 004814 571 MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGL-CRLRR--IDQA 647 (729)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~--~~~A 647 (729)
.++.+++...++..++.+ +.|...|..+...|...|++++|...|++..+... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666554 55666777777777777777777777777776532 2555666666653 45555 4777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 648 YGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 648 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+++++..+.+ +.+...+..+...+.+.|++++|+..|++++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777653 4455666777777777777777777777776
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.7e-06 Score=79.77 Aligned_cols=191 Identities=9% Similarity=-0.061 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
......+...+..+...|++++|...+++++...|.. ......+..++.+|.+.|++++|+..+++++
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l 97 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFI 97 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3456778888888999999999999999988877652 1124567778899999999999999999999
Q ss_pred HCCCCCCh--HhHHHHHHHHHHC--------CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 201 RNGLLPDV--KNCNRIIKVLRDN--------GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQ 270 (729)
Q Consensus 201 ~~~~~~~~--~~~~~ll~~l~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (729)
+..+.... .++..+..++.+. |++++|.+.|+.+.+.. +.+...+..+..... .... ..
T Consensus 98 ~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~~ 166 (235)
T TIGR03302 98 RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------LA 166 (235)
T ss_pred HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------HH
Confidence 87653221 2455556666554 67888999998888753 223333322221110 0000 00
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--ccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 271 GRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGL--KVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 271 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
.....+...+.+.|++++|...++..++... +.....+..+...+.+.|++++|.+.++.+..+
T Consensus 167 --------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112456678888999999998888887532 223567888888899999999999888887765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7e-06 Score=75.81 Aligned_cols=125 Identities=17% Similarity=0.121 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 324 (729)
..+.++....+.|++.+|...|.+.... -++|..+|+.+.-+|.+.|++++|+.-|.+..+.. .-++...+.+.-.|.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHH
Confidence 3333444444444444444444444433 23344444444444444444444444444444432 113334444444444
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFF 372 (729)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (729)
-.|+.+.|..++......+.. |...-..|.......|++++|.++..
T Consensus 180 L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 444444444444444443222 33333334444444455555544433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.60 E-value=7e-06 Score=79.64 Aligned_cols=184 Identities=13% Similarity=-0.014 Sum_probs=111.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 004814 487 DRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL---ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDH--ITY 561 (729)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~ 561 (729)
....+......+.+.|++++|...++++.... |.+. .++..+..++.+.|++++|...++++++..+.... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34555666667777777777777777776652 2222 35566677777777777777777777765432111 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 562 TSIIHASLEM--------GDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNA 633 (729)
Q Consensus 562 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 633 (729)
..+..++... |+.++|.+.++.+.... +.+...+..+..... ... ... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH--------HHHHH
Confidence 4444445443 56667777777776652 222222222111100 000 000 01124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 634 LINGLCRLRRIDQAYGLFIDMEEEGI--LPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 634 l~~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+...+.+.|++++|+..+++..+..- +.....+..++.++.+.|++++|..+++.+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56678889999999999999887521 1234678888999999999999999888886
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-06 Score=93.49 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=137.0
Q ss_pred ChHHHH-HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHH
Q 004814 103 KPRIAL-RFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLL 181 (729)
Q Consensus 103 ~~~~al-~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 181 (729)
.|..++ +..+.++ .+.+++.++-.+..+..+.|++++|..+++.+++..|+ +...+..++.
T Consensus 67 ~~~~~~~~~~~~~~---~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd---------------~~~a~~~~a~ 128 (694)
T PRK15179 67 KPAAALPELLDYVR---RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD---------------SSEAFILMLR 128 (694)
T ss_pred chHhhHHHHHHHHH---hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC---------------cHHHHHHHHH
Confidence 455555 3344444 35688999999999999999999999999999999987 5677888999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004814 182 IYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQE 261 (729)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (729)
++.+.+++++|+..+++.+...+. +....+.+..++.+.|++++|..+|+++...+ +.+..++..+...+.+.|+.++
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999998765 67778889999999999999999999999854 5568899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH
Q 004814 262 ALELLWEMQGRGCSPNGVTYNVLI 285 (729)
Q Consensus 262 A~~~~~~m~~~~~~p~~~~~~~li 285 (729)
|...|++..+. ..|....|+..+
T Consensus 207 A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 207 ARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHh-hCcchHHHHHHH
Confidence 99999999876 345556665544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-08 Score=59.99 Aligned_cols=32 Identities=53% Similarity=1.022 Sum_probs=16.8
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 238 GIKPSIVTYNTMLDSFCKEGEMQEALELLWEM 269 (729)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 269 (729)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.5e-06 Score=74.03 Aligned_cols=118 Identities=14% Similarity=0.003 Sum_probs=80.0
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004814 579 DLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 658 (729)
.++++.++. .|+ .+..+...+...|++++|...|+.+.... +.+...|..++.++.+.|++++|...|+++.+.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555543 233 24455666777777777777777777653 2356677777777777788888888887777753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 659 ILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 659 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
+.+...+..++.++...|++++|+..|++++ ...|+...+...
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al--~~~p~~~~~~~~ 131 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAI--KMSYADASWSEI 131 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCChHHHHH
Confidence 4566677777777777788888888887777 566666555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.1e-08 Score=59.58 Aligned_cols=32 Identities=53% Similarity=0.814 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEM 374 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 374 (729)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-06 Score=78.76 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=74.8
Q ss_pred cCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 004814 137 SGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIK 216 (729)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 216 (729)
.+..+++...+++.++.+|+ +...|..|+..|...|++++|+..|+++.+..+. +...+..+..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~---------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ---------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44455566666666666655 4556666677777777777777777777666544 5555555665
Q ss_pred HH-HHCCC--hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 217 VL-RDNGF--SVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 217 ~l-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
++ ...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|...++++.+.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 53 45555 366666666666655 445666666666666666666666666666655
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.8e-06 Score=72.16 Aligned_cols=93 Identities=8% Similarity=-0.154 Sum_probs=72.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
.++..+...|++++|...|++++...+. +...+..+..++.+.|++++|...|+...+.+ +.+..++..+..++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 4566777888888888888888877654 66777778888888888888888888887765 567777788888888888
Q ss_pred CHHHHHHHHHHHHhC
Q 004814 258 EMQEALELLWEMQGR 272 (729)
Q Consensus 258 ~~~~A~~~~~~m~~~ 272 (729)
++++|...|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888887775
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.1e-05 Score=83.83 Aligned_cols=238 Identities=12% Similarity=0.054 Sum_probs=149.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 381 PDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV-VTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIM 459 (729)
Q Consensus 381 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 459 (729)
.+...+..|+..+...+++++|.++.++..+.. |+. ..|-.+...+.+.++.+++..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 345667778888888888888888887666543 333 3333333355555554444433 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 460 VNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSL 539 (729)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 539 (729)
+.......++.....++..+.+.+ -+..++..+..+|.+.|+.++|..+++++++.+ +.|+.+.|.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 233333334433333444444432 234467777788888888888888888888876 66788888888888887 88
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 540 EEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 540 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (729)
++|++++.+++.. +...+++..+.++|.++.... +.+...+..+. +.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~----------------~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIE----------------RKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHH----------------HHH
Confidence 8888888777653 555667888888888887763 22333322222 222
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004814 620 QVK-GIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENC 674 (729)
Q Consensus 620 ~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 674 (729)
... |..--..++..+...|....++++++.+++.+.+.. +-|.....-++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 221 122233455666677788888899999999888864 446666677777665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.6e-05 Score=83.55 Aligned_cols=221 Identities=10% Similarity=0.070 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHH------
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLV------ 195 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~------ 195 (729)
.+..++..|+..+...+++++|..+++..++..|.. ...|..++..|...++.+++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~---------------i~~yy~~G~l~~q~~~~~~~~lv~~l~~~ 93 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS---------------ISALYISGILSLSRRPLNDSNLLNLIDSF 93 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc---------------eehHHHHHHHHHhhcchhhhhhhhhhhhc
Confidence 356777888888888888888888888777777663 33333344455555554444433
Q ss_pred ------------HHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004814 196 ------------FNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEAL 263 (729)
Q Consensus 196 ------------~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 263 (729)
...+.+.+ -+..++..++.+|.+.|+.++|..+|+++++.. +.|+.+.|-+...|... ++++|.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 22222211 122233444444444455555555555554444 34444444444444444 444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC-
Q 004814 264 ELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR- 342 (729)
Q Consensus 264 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 342 (729)
+++.+.... +...+++.++.+++.++....+ .+.+.-..+.+.+...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-----------------~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-----------------DDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-----------------ccchHHHHHHHHHHhhh
Confidence 444444332 2222233333333333332211 1122222222222221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYC 394 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (729)
|..--+.++-.+-..|-+.++++++..+++.+++... .|.....-++..|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 2222334444455566666667777777777766554 34455555555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.3e-05 Score=82.08 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004814 520 PPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVL 599 (729)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 599 (729)
+.+...+..|.....+.|++++|..+++...+..+. +......+...+.+.+++++|+...++..... +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 334444445555555555555555555555443211 22334444444555555555555555554443 3334444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
..++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555555554421 11244444455555555555555555555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00023 Score=65.88 Aligned_cols=139 Identities=13% Similarity=0.084 Sum_probs=73.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---
Q 004814 355 IYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRY--- 431 (729)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~--- 431 (729)
...|+..|++++|++..... .+......=+..+.+..+++-|.+.+++|.+.. +..|.+.|..++.+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 34455666666666555441 122222222333445555666666666665542 445555555554432
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 004814 432 -GDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDT 504 (729)
Q Consensus 432 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 504 (729)
+...+|.-+|++|.++ .+|+..+.+..+.++...|++++|..++++++.+... ++.+...++.+-...|..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 3456666666666553 4556666666666666666666666666666665332 444555555444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0002 Score=66.26 Aligned_cols=149 Identities=19% Similarity=0.139 Sum_probs=69.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----c
Q 004814 531 HGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAA----R 606 (729)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 606 (729)
..|++.|++++|++.+.... +......=...+.+..+.+-|.+.+++|.+. .+..|.+-|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34555555555555544311 1122222223344445555555555555543 234444444444432 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHH
Q 004814 607 GRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQE-ALRL 685 (729)
Q Consensus 607 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~-A~~~ 685 (729)
+++.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++++..+. ..++.+...++-.-...|+-.+ -.+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3455555555555553 34555555555555555555555555555555543 3344444444443334443322 2334
Q ss_pred HHHHH
Q 004814 686 YKEML 690 (729)
Q Consensus 686 ~~~m~ 690 (729)
+.++.
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=69.48 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
......++..|.+.|++++|...|+++...++. +...+..+...+.+.|++++|...|+...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 445566777788888888888888888776644 66677777888888888888888888877765 5566777777778
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 004814 253 FCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~ 272 (729)
+...|++++|.+.|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888877775
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-05 Score=69.38 Aligned_cols=115 Identities=16% Similarity=0.090 Sum_probs=71.9
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004814 581 FNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL 660 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 660 (729)
+++++... +.+......+...+...|++++|.+.++++...+ +.+...+..+...+.+.|++++|...+++..+.+ +
T Consensus 6 ~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 6 LKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred HHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 44444432 2234445556666667777777777777766643 2255666667777777777777777777766653 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 661 PNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 661 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~ 700 (729)
.+...+..+..++...|++++|...+++.+ ...|+...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAI--EICGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hhccccch
Confidence 455666666777777777777777777776 34454433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00023 Score=71.72 Aligned_cols=138 Identities=20% Similarity=0.230 Sum_probs=99.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004814 498 ELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPD-HITYTSIIHASLEMGDLRR 576 (729)
Q Consensus 498 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 576 (729)
+...|++++|+..++.+++. .|.|+..+....+.+.+.++..+|.+.+++++... |+ ....-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 44556677777777776655 35566666777778888888888888888888763 44 5566667778888888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 577 GRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
|..+++...... +.|+..|..|..+|...|+..+|..-.. .+|...|++++|+..+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHH
Confidence 888888777664 6678888888888888887776664433 345667888888888877776
Q ss_pred c
Q 004814 657 E 657 (729)
Q Consensus 657 ~ 657 (729)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 5
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00037 Score=70.32 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=121.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHc
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT-LVTYTVLIHAHAAR 606 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 606 (729)
.....+...|++++|+..++.+++.. +-|+..+......+.+.++.++|.+.++++... .|+ ....-.+..+|.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhc
Confidence 34445567899999999999998874 235666667778899999999999999999987 355 67778889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 607 GRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLY 686 (729)
Q Consensus 607 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 686 (729)
|++.+|+++++..... .+-|+..|..|..+|...|+..+|..-..+ .|...|++++|+..+
T Consensus 388 g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l 448 (484)
T COG4783 388 GKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFL 448 (484)
T ss_pred CChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHH
Confidence 9999999999999887 345889999999999999999888765544 355689999999999
Q ss_pred HHHHHCCCCCCHHHH
Q 004814 687 KEMLDREIEPDYCTH 701 (729)
Q Consensus 687 ~~m~~~~~~pd~~~~ 701 (729)
..+.+. .+++..+|
T Consensus 449 ~~A~~~-~~~~~~~~ 462 (484)
T COG4783 449 MRASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHHh-ccCCcHHH
Confidence 998753 33344433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00089 Score=61.62 Aligned_cols=189 Identities=16% Similarity=0.165 Sum_probs=123.7
Q ss_pred hcCCHHHHHHHHHHHHHC---C-CCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 465 KMGNLSMAREFFNEMLRK---G-LQPDRFA-YTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSL 539 (729)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~---g-~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 539 (729)
...+.++..+++.++... | ..++.++ +..++-+....|+.+-|...++.+... +|.+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 345677777777777642 3 3444443 334445566777778888888777665 344444433333344556778
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 540 EEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 540 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (729)
++|.++++.+++.. +.|.+++..=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888887775 336666666666666777777777777777765 4667778888888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 004814 620 QVKGIRPNVITYNALINGLCRLR---RIDQAYGLFIDMEEE 657 (729)
Q Consensus 620 ~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~ 657 (729)
+-.. +-++..+..+.+.+.-.| +++-|.++|.+.++.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7642 224555566666655554 455677777777764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00044 Score=63.55 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=147.0
Q ss_pred HhcCCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004814 499 LKLGDTSEAYRLQEEMLAK---G-FPPDLI-TYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGD 573 (729)
Q Consensus 499 ~~~g~~~~A~~l~~~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (729)
....+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++++...-+. +..+-..-.--+-..|.
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhc
Confidence 4566789999998887653 3 344443 4566667777889999999999998876422 22222222223566899
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 574 LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFID 653 (729)
Q Consensus 574 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 653 (729)
+++|.++++.+++.+ |.|.+++-.-+...-..|+..+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999999886 677888888888888899999999999998887 677999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC
Q 004814 654 MEEEGILPNKYTYTILINENCNAG---NWQEALRLYKEMLDREIEP 696 (729)
Q Consensus 654 m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p 696 (729)
++-.. |-++..+..+...+.-.| +.+-|.++|.+.+ .+.|
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al--kl~~ 222 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERAL--KLNP 222 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HhCh
Confidence 98742 445556677777665544 5778899999998 5555
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.1e-05 Score=65.35 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 004814 561 YTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT---LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN--VITYNALI 635 (729)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~ 635 (729)
|..++..+ ..++...+.+.++.+.+.. +.+ ....-.+...+...|++++|...|+.+.+....|+ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34444443 4677788888788877763 222 23344455677788888888888888887652222 22344567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
..+...|++++|+..++..... ......+...+++|.+.|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788888888888888664332 234456677788888888888888888775
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.5e-05 Score=75.75 Aligned_cols=122 Identities=17% Similarity=0.153 Sum_probs=64.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh
Q 004814 129 TILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDV 208 (729)
Q Consensus 129 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 208 (729)
.+++.+...+++++|..+++++.+.+|+ +...++++|...++-.+|++++.+.++..+. |.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CH
Confidence 3444444555666666666665555443 2333555555555556666666665554332 34
Q ss_pred HhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 209 KNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQ 270 (729)
Q Consensus 209 ~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (729)
.........|.+.++++.|+++.+++.+.. |-+..+|..|..+|.+.|+++.|+..+..+.
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 444444455555555566666655555542 2333355555566666666666555555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00022 Score=62.93 Aligned_cols=116 Identities=11% Similarity=0.108 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHH
Q 004814 186 KSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS--IVTYNTMLDSFCKEGEMQE 261 (729)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 261 (729)
.++.+.+...++.+.+..+... ......+...+...|++++|...|+++......++ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444555555555554432210 11222334445555555555555555555431111 1123334555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 262 ALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRD 303 (729)
Q Consensus 262 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (729)
|+..++..... ......+......+.+.|+.++|+..|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555443322 12233444455555555666655555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0021 Score=63.41 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=85.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------------H
Q 004814 497 GELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVH--GLCKLGSLEEANELLRKMVGDGFIPDHIT-------------Y 561 (729)
Q Consensus 497 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------------~ 561 (729)
++.-.|++++|...--..++.+ +.+. +..+++ ++.-.++.+.|...|++.+..+ |+... +
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 4445555555555554444432 1111 122222 2223455566666666555542 23221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHH
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRK---GLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI---TYNALI 635 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l~ 635 (729)
..-.+-..+.|++..|.+.+.+.+.. +..++...|.....+..+.|+.++|+.-.++..+. |.. .|..-.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHH
Confidence 11122346778888888888887765 23344555666666677788888888888877763 322 223333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
.++...+++++|.+-+++..+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555667788888888887764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00035 Score=71.37 Aligned_cols=121 Identities=18% Similarity=0.169 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG 607 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 607 (729)
.++..+...++++.|.++++++.+.. |+. ...++..+...++-.+|.+++++.++.. +.+...+..-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555666666666655542 332 2234445555555555555555555442 334444444445555555
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 608 RLELAFMYFSEMQVKGIRP-NVITYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 608 ~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
+++.|+.+.+++.+. .| +..+|..|+.+|.+.|++++|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555555555553 23 23355555555555555555555555444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.028 Score=56.46 Aligned_cols=277 Identities=13% Similarity=0.141 Sum_probs=144.2
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCC-C----ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH--HHh
Q 004814 183 YTKKSMVEQCLLVFNKMLRNGLL-P----DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS--FCK 255 (729)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~ 255 (729)
+-+++++.+|.++|.++.+.--. | .....+.++++|... +.+..........+. .| ...|-.+..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 35889999999999998764211 1 123345677777654 355555555555443 12 2234343333 447
Q ss_pred cCCHHHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCccChhhHH
Q 004814 256 EGEMQEALELLWEMQGR--GCSP------------NGVTYNVLITGFSRNGELEQARGLIRDMLKL----GLKVSAHSYN 317 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~~--~~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~ 317 (729)
.+.+.+|.+.+....+. +..| |-..=+..+..+...|++.+++.+++++... ....+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 89999999999887665 2222 1222245667788899999999999888754 3447888888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 004814 318 PIICGYSEKGLLVEALNLEEEMVTR---GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYC 394 (729)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (729)
.++-.+.+ ..|-++++. .+-|+ |--++-.|.+.=+.-++.. + ....|.......++....
T Consensus 172 ~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~-Y-----~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRP-Y-----EKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhch-H-----HhhCcHHHHHHHHHHHHH
Confidence 87766654 334444332 12222 3334444443221111100 0 011133333333333222
Q ss_pred Hc--CCHHHHHHHHHHHhhCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcC
Q 004814 395 RS--GNIGEAFLLFDELRSRNLVPTVVT-YNTLIDGLCRYGDLEVAQQLKENMINQGIL----PDVITYTIMVNGSCKMG 467 (729)
Q Consensus 395 ~~--g~~~~A~~l~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g 467 (729)
-. .+..--+++++.....-+.|+-.. ...+...... +.+++..+.+.+....+. .=..++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111222333333333334444322 2223333332 445555555444332111 12346667777777888
Q ss_pred CHHHHHHHHHHHHHC
Q 004814 468 NLSMAREFFNEMLRK 482 (729)
Q Consensus 468 ~~~~A~~~~~~~~~~ 482 (729)
+..+|...+.-+.-.
T Consensus 313 ~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 313 QTEEAKQYLALLKIL 327 (549)
T ss_pred hHHHHHHHHHHHHhc
Confidence 888888877766654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=69.21 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=51.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN-KYTYTILINENCNAGNWQE 681 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 681 (729)
..+.+++.+|+..|.++++.. +-|++.|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 344555555555555555542 124444555555555555555555555555552 232 2355555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH
Q 004814 682 ALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 682 A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
|++.|++++ .+.|+..+|..-
T Consensus 168 A~~aykKaL--eldP~Ne~~K~n 188 (304)
T KOG0553|consen 168 AIEAYKKAL--ELDPDNESYKSN 188 (304)
T ss_pred HHHHHHhhh--ccCCCcHHHHHH
Confidence 555555555 555555554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.053 Score=57.29 Aligned_cols=381 Identities=18% Similarity=0.153 Sum_probs=166.2
Q ss_pred CCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC-CCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004814 205 LPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF-GIKP--------SIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCS 275 (729)
Q Consensus 205 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 275 (729)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+.+| -|++++|.++|-+|..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 367777877777666666666666666554431 2110 000011111222 25666666666665544
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 276 PNGVTYNVLITGFSRNGELEQARGLIRDMLKL-GLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNIL 354 (729)
Q Consensus 276 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 354 (729)
| ..|..+.+.|++-...++++.--.. +-..-..+|+.+...+.....+++|.+.+..-.. . ...
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~ 828 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQ 828 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhH
Confidence 1 2344555556665555544321000 0011134556666666665566666655543221 1 113
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 004814 355 IYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDL 434 (729)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 434 (729)
+.++.+...+++-..+-..+ +.|....-.+..++.+.|.-++|.+.|-+- +. | ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHH
Confidence 44444444444333322222 133444555666666666666666554321 11 1 1234455555566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 435 EVAQQLKENMINQGILPDVITYTI-MVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEE 513 (729)
Q Consensus 435 ~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 513 (729)
.+|.++-+... -|.+.+.-+ -..-+...++..+|+ ..+.+.|..-.|.+++.+
T Consensus 895 ~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaI----------------------e~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 895 GEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAI----------------------EKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred HHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHH----------------------HHhhhcccchhHHHHHHH
Confidence 66655543321 112211110 111111222222222 223344444455555555
Q ss_pred HHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 514 MLAK----GFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL 589 (729)
Q Consensus 514 ~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 589 (729)
|.+. +.|+-..--..++.++. ..+..++.+-.++....|...+... +...|-..++-++.+..-.-
T Consensus 949 mae~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wrg-- 1018 (1189)
T KOG2041|consen 949 MAEREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWRG-- 1018 (1189)
T ss_pred HhHHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhhh--
Confidence 5432 22222111111111111 1223344444444444443322211 12223333333333332221
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 590 SPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK-GIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 590 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
.....+..|.+--...|.++.|++.--.+.+. .+-|...+|..+.-+-|....+...-+.|-++..
T Consensus 1019 -AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1019 -AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred -HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 22334444445555677777777654443322 3556667777776666666666555555555444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00028 Score=56.73 Aligned_cols=93 Identities=20% Similarity=0.202 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCN 675 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 675 (729)
+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.+++..... +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455566666777777777777776642 2233556666667777777777777777776653 3344566667777777
Q ss_pred cCCHHHHHHHHHHHH
Q 004814 676 AGNWQEALRLYKEML 690 (729)
Q Consensus 676 ~g~~~~A~~~~~~m~ 690 (729)
.|++++|...+++.+
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 777777777777766
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.3e-05 Score=49.53 Aligned_cols=33 Identities=55% Similarity=0.970 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPN 277 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 277 (729)
+||+++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.015 Score=61.17 Aligned_cols=366 Identities=15% Similarity=0.101 Sum_probs=180.9
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCcc--------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 004814 275 SPNGVTYNVLITGFSRNGELEQARGLIRDMLKL-GLKV--------SAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVA 345 (729)
Q Consensus 275 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (729)
.|....|..|.......-.++-|+..|-+...- |++. +...-. ...-+--|++++|.+++-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchhh--
Confidence 466677777666655555666666665544321 2110 000011 111223478888888887776652
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 004814 346 PTLATYNILIYGLCKWGRVSDARHRFFEMLRK-NVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTL 424 (729)
Q Consensus 346 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~l 424 (729)
..|..+.+.|++-...++++.--.. .-..-...|+.+...+.....+++|.+.|..-... ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 2355666667666555544321110 00011356777777777777788888777653221 134
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 004814 425 IDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDT 504 (729)
Q Consensus 425 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 504 (729)
+.++.+..++++-+.+-+.+ +.+....-.+.+++.+.|.-++|.+.+-+--. | .+.+..+...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHH
Confidence 56666666666655544443 44566667777888888888888776643221 1 2344556666667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHH-HHHH
Q 004814 505 SEAYRLQEEMLAKGFPPDLITY--------------NVLVHGLCKLGSLEEANELLRKMVGDGF---IPDHITYT-SIIH 566 (729)
Q Consensus 505 ~~A~~l~~~~~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~-~l~~ 566 (729)
.+|.++-+...- |.+.+. ..-|..+.+.|+.-+|.+++.+|.+... .|-...-. .++.
T Consensus 895 ~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~ 970 (1189)
T KOG2041|consen 895 GEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLG 970 (1189)
T ss_pred HHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHH
Confidence 777666554321 111111 1123334455555555555555543211 11111100 0111
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 567 ASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQ 646 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 646 (729)
++ -..+..++.+-.+.....|...+... +...|-..++-++.+..-. | .....|-.|..-....|.++.
T Consensus 971 Al-LvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-g--AEAyHFmilAQrql~eg~v~~ 1039 (1189)
T KOG2041|consen 971 AL-LVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-G--AEAYHFMILAQRQLFEGRVKD 1039 (1189)
T ss_pred HH-HHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh-h--HHHHHHHHHHHHHHHhchHHH
Confidence 11 11223333333333333342222211 1122223333333332221 1 234455566666777899999
Q ss_pred HHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 647 AYGLFIDMEE-EGILPNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 647 A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
|++.--.+.. .++-|...+|..+.-+-|....+--.-+.|-++
T Consensus 1040 Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1040 ALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 8876544443 235666778887776666554444333333333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0012 Score=70.90 Aligned_cols=74 Identities=16% Similarity=0.073 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
++..|..+.......|++++|...++++.+. .|+...|..++..+...|+.++|.+.|+++. .+.|...+|..+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~--~L~P~~pt~~~~ 492 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF--NLRPGENTLYWI 492 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCchHHHH
Confidence 4556666666666667777777777777774 3566677777777777777777777777777 566665554443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00087 Score=57.94 Aligned_cols=96 Identities=8% Similarity=-0.109 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004814 594 VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINEN 673 (729)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 673 (729)
...-.+..-+...|++++|.++|+-+..... -+..-|..|..++...|++++|+..|..+...+ +.|+..+..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3444555566778888888888887776432 255567777778888888888888888887765 45667777888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004814 674 CNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 674 ~~~g~~~~A~~~~~~m~~ 691 (729)
...|+.++|++.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888888774
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00043 Score=71.04 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=51.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRID 645 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 645 (729)
..+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34455566666666666666553 3445555555666666666666666666665542 124445555566666666666
Q ss_pred HHHHHHHHHHHc
Q 004814 646 QAYGLFIDMEEE 657 (729)
Q Consensus 646 ~A~~~~~~m~~~ 657 (729)
+|+..|+++++.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 666666666553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.6e-05 Score=48.11 Aligned_cols=30 Identities=43% Similarity=0.703 Sum_probs=11.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 004814 316 YNPIICGYSEKGLLVEALNLEEEMVTRGVA 345 (729)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (729)
|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~ 32 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIE 32 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 333333333333333333333333333333
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.017 Score=57.26 Aligned_cols=273 Identities=13% Similarity=0.002 Sum_probs=134.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM 259 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (729)
...+.+..++.+|+..+..+++..+. ++..|..-+..+...|++++|.--.+.-++.. +-....+....+++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHH
Confidence 34567888899999999999998765 56667777778888888888877666655432 11222333444444444444
Q ss_pred HHHHHHHHH---------------HHhCC-CCCCHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHH-
Q 004814 260 QEALELLWE---------------MQGRG-CSPNGVTYNVLI-TGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIIC- 321 (729)
Q Consensus 260 ~~A~~~~~~---------------m~~~~-~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~- 321 (729)
.+|.+.++. ..... -+|...+|..+- ..+.-.|++++|.+.--..++.+ ....+..+++
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg 210 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRG 210 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcc
Confidence 444444431 11110 012223333222 22333455555555555544432 1111222222
Q ss_pred -HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 004814 322 -GYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIG 400 (729)
Q Consensus 322 -~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 400 (729)
++...++.+.|...|++.+..+ |+-..-. ..-.-.+.++.+. .-.+-..+.|++.
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk----------~~~~~~k~le~~k------------~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRLD--PDHQKSK----------SASMMPKKLEVKK------------ERGNDAFKNGNYR 266 (486)
T ss_pred cccccccchHHHHHHHhhhhccC--hhhhhHH----------hHhhhHHHHHHHH------------hhhhhHhhccchh
Confidence 2223444555555555544432 1111100 0000011111111 1123345667777
Q ss_pred HHHHHHHHHhhC---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 401 EAFLLFDELRSR---NLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFN 477 (729)
Q Consensus 401 ~A~~l~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (729)
+|.+.|.+.+.. +..++...|........+.|+.++|+.-.+...+.+ +.-...+..-..++...+++++|.+-++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666543 233444455555555666677777777666666542 1112222223334445566666666666
Q ss_pred HHHHC
Q 004814 478 EMLRK 482 (729)
Q Consensus 478 ~~~~~ 482 (729)
...+.
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 66554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.7e-05 Score=59.36 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=45.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 606 RGRLELAFMYFSEMQVKGIR-PNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALR 684 (729)
Q Consensus 606 ~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 684 (729)
.|+++.|+.+++++.+.... ++...+..++.+|.+.|++++|+.++++ .+.+ +.+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666777777776664321 1333444466677777777777777766 2221 1122344445666677777777777
Q ss_pred HHHH
Q 004814 685 LYKE 688 (729)
Q Consensus 685 ~~~~ 688 (729)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00045 Score=55.47 Aligned_cols=94 Identities=20% Similarity=0.131 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004814 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK 255 (729)
Q Consensus 176 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (729)
+..++..+...|++++|...++++.+..+. +...+..+...+...|++++|.+.|+...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344566666777777777777777765433 33555666666777777777777777766654 3344566666666777
Q ss_pred cCCHHHHHHHHHHHHh
Q 004814 256 EGEMQEALELLWEMQG 271 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~ 271 (729)
.|++++|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777776666554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.065 Score=53.83 Aligned_cols=135 Identities=20% Similarity=0.268 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 004814 558 HITYTSIIHASLEMGDLRRGRDLFNNMLRKG-LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVIT-YNALI 635 (729)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~ 635 (729)
..+|...++.-.+..-++.|..+|-++.+.+ ..+++.++++++.-++ .|+...|.++|+--... -||... -+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456667777777777888888888888876 5577778888777554 57778888888776654 234333 35566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPN--KYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
..+.+.++-..|..+|+..+++ +..+ ..+|..+|.--..-|+...+..+=++|. ..-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~--e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR--ELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH--HHcCcH
Confidence 6677788888888888876654 2333 4578888887777888888888777776 444544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.001 Score=56.39 Aligned_cols=96 Identities=11% Similarity=-0.003 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCC--CCChhhHHHHHHH
Q 004814 177 DLLLLIYTKKSMVEQCLLVFNKMLRNGLLP--DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGI--KPSIVTYNTMLDS 252 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~ 252 (729)
..++..+.+.|++++|.+.|+++.+..+.. ....+..+..++.+.|++++|...|+.+..... +....++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 344444555555555555555555433210 122344455555555555555555555554320 0113345555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 004814 253 FCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~ 272 (729)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55566666666666655554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00087 Score=56.77 Aligned_cols=97 Identities=11% Similarity=-0.042 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQVKGIR--PNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL--PNKYTYTILI 670 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l~ 670 (729)
++..++..+.+.|++++|.+.|+++.+.... .....+..++.++.+.|++++|...++++...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566666677777777777777654211 01234555666777777777777777777653211 1134566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004814 671 NENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 671 ~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.++.+.|++++|.+.++++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 677777777777777777763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.2e-05 Score=47.17 Aligned_cols=32 Identities=41% Similarity=0.691 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSP 276 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 276 (729)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555544443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0058 Score=60.76 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC----CCC-hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL----LPD-VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTY 246 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 246 (729)
....|...+..|-..|++++|.+.|.+..+... ..+ ...|.....++.+. ++++|+..+++.
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A------------ 100 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA------------ 100 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH------------
Confidence 355666777778888888888888877754210 000 01122222222222 444444444333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhC----CCc-cChhhHHHHH
Q 004814 247 NTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRN-GELEQARGLIRDMLKL----GLK-VSAHSYNPII 320 (729)
Q Consensus 247 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li 320 (729)
+..|...|++..|-+.+.++ ...|... |++++|.+.|++..+. |.+ .-...+..++
T Consensus 101 ---~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 101 ---IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp ---HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 33455555555554444433 3344444 6667776666666532 100 0122344555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 321 CGYSEKGLLVEALNLEEEMVTRGVAP-----TLA-TYNILIYGLCKWGRVSDARHRFFEMLRK 377 (729)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 377 (729)
..+.+.|++++|.++|++....-... ++. .+...+-++...|+...|.+.+++....
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56666666666666666665532211 111 1222233444456666666666665543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=8.5e-05 Score=58.37 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004814 186 KSMVEQCLLVFNKMLRNGLL-PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALE 264 (729)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 264 (729)
+|++++|+..|+++.+..+. ++...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777776542 2333444567777777777777777766 3222 1233344445666667777777777
Q ss_pred HHHH
Q 004814 265 LLWE 268 (729)
Q Consensus 265 ~~~~ 268 (729)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0001 Score=46.12 Aligned_cols=31 Identities=35% Similarity=0.630 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQVKGIR 625 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 625 (729)
+|+.++.+|++.|+++.|.++|++|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0014 Score=67.42 Aligned_cols=91 Identities=10% Similarity=-0.122 Sum_probs=77.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM 259 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (729)
+..+...|++++|++.|+++++..+. +...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 45567889999999999999988765 67778888889999999999999999998875 55777888889999999999
Q ss_pred HHHHHHHHHHHhC
Q 004814 260 QEALELLWEMQGR 272 (729)
Q Consensus 260 ~~A~~~~~~m~~~ 272 (729)
++|...|++..+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998876
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0026 Score=57.99 Aligned_cols=115 Identities=12% Similarity=0.123 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT--LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALING 637 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 637 (729)
.+..+...+...|++++|...|++..+....+. ...+..++..+.+.|++++|...++++.+.. +-+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444555555555555555555554321111 2344555555555555555555555555431 1123344444445
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 638 LCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
+...|+...+..-++.... .+++|.+++++++ ...|+.
T Consensus 116 ~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~--~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAI--RLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHH--hhCchh
Confidence 5555544333322222211 1566777777776 556654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.011 Score=56.90 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+-..+..+...|++++|...|++++...|.. .........++.+|.+.+++++|...|++.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 44444455666677888888888888888776652 112334456777888888888888888888876
Q ss_pred CCC
Q 004814 203 GLL 205 (729)
Q Consensus 203 ~~~ 205 (729)
.+.
T Consensus 99 ~P~ 101 (243)
T PRK10866 99 NPT 101 (243)
T ss_pred CcC
Confidence 544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0016 Score=63.95 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRK----G-LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK-----GIRPNVI 629 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~ 629 (729)
.+..+.+++.-.|+++.|.+.|+..... | -.....+..+|...|.-..++++|+.++.+-+.- ...-...
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3444555555555555555555443221 1 0112334444555555555555555555443210 0111333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
.+.+|..+|...|..++|+.+.+.-.
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45555555555555555555544433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0016 Score=56.35 Aligned_cols=96 Identities=7% Similarity=-0.060 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
....+...+...|++++|..+|+-+....+. +..-|..|..++...|++.+|+..|....... +.|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344555566778888888888877776654 55666777777777788888888888777766 456777777777777
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 004814 255 KEGEMQEALELLWEMQGR 272 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~ 272 (729)
+.|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888887777776654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0025 Score=58.08 Aligned_cols=94 Identities=16% Similarity=0.047 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
....+..++..|...|++++|...|+++++.++.+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 355677788888999999999999999987654432 3567788888999999999999999988764 4456677777
Q ss_pred HHHHHhcCCHHHHHHHH
Q 004814 250 LDSFCKEGEMQEALELL 266 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~ 266 (729)
...+...|+...+..-+
T Consensus 113 g~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHcCChHhHhhCH
Confidence 88888877765554433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=67.89 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=83.0
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 484 LQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK--GFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITY 561 (729)
Q Consensus 484 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 561 (729)
...+......++.......+.+++..++...... ....-..+..++++.|.+.|..++++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445566666666666667777777777766654 11122334457777777777777777777777777777788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR 606 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 606 (729)
+.+|+.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888887777777776665555666665555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.001 Score=65.85 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004814 525 TYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLE-MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAH 603 (729)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 603 (729)
+|..++...-+.+..+.|..+|.++.+.+. .+..+|......-.. .++.+.|.++|+..++. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 344555555555555555555555553321 122233333332122 34444455555555544 234445555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 604 AARGRLELAFMYFSEMQVKGIRPNV---ITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 604 ~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
...|+.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 22211 2455555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0027 Score=57.68 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP--NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILI 670 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 670 (729)
...|..++..+...|++++|+..|++.......+ ...++..+...+...|+.++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445556666666777777777777776542222 12356667777777777777777777776642 22334455555
Q ss_pred HHHH-------hcCCHHHH-------HHHHHHHHHCCCCCC
Q 004814 671 NENC-------NAGNWQEA-------LRLYKEMLDREIEPD 697 (729)
Q Consensus 671 ~~~~-------~~g~~~~A-------~~~~~~m~~~~~~pd 697 (729)
..+. +.|++++| ..++++.+ +..|+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~--~~~p~ 152 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAI--ALAPG 152 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHH--HhCcc
Confidence 5555 66776644 44444454 56664
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.019 Score=57.01 Aligned_cols=175 Identities=16% Similarity=0.142 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP 206 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 206 (729)
|......+-..|++++|...|.++...... ..+.......|...+.+|.+. ++++|+..++++.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~---------~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~------ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEK---------LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI------ 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH------
Confidence 334444566667777777766665443211 000011233444455555444 6666666665554
Q ss_pred ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HH
Q 004814 207 DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKE-GEMQEALELLWEMQGR----GCSPN--GV 279 (729)
Q Consensus 207 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~ 279 (729)
..|.+.|++..|-+.+..+- ..|-.. |++++|++.|++..+. | .+. ..
T Consensus 102 ---------~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~ 156 (282)
T PF14938_consen 102 ---------EIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAE 156 (282)
T ss_dssp ---------HHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred ---------HHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHH
Confidence 34555666555544444432 233344 5666666666554332 1 111 12
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc-----Chh-hHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDMLKLGLKV-----SAH-SYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
.+..+...+.+.|++++|.++|++........ +.. .+...+-.+...|+...|.+.+++....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455566667777777777777666532211 111 2223333455567777777777776654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0003 Score=52.62 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=46.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 639 CRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLL 706 (729)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~ 706 (729)
.+.|++++|+++|+++.+.. +-+...+..++.+|.+.|++++|.++++++. ...|+...+..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~--~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL--KQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH--GGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCHHHHHHHHh
Confidence 45678888888888887763 4466677778888888888888888888887 56677666665533
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0014 Score=67.31 Aligned_cols=122 Identities=14% Similarity=0.208 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004814 275 SPNGVTYNVLITGFSRNGELEQARGLIRDMLKL--GLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYN 352 (729)
Q Consensus 275 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 352 (729)
+.+......+++.+....+++++..++-+.... ....-..|..++++.|...|..+++++++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 335555566666666666677777777666643 222234455677888888888888888888777788888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 004814 353 ILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRS 396 (729)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 396 (729)
.|++.+.+.|++..|.++..+|+..+...+..|+..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888777776656666665555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00099 Score=63.18 Aligned_cols=97 Identities=10% Similarity=0.051 Sum_probs=59.5
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004814 183 YTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEA 262 (729)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (729)
..+.++|++|+..|.++++..+. |.+-|..-..+|.+.|.++.|++-.+..+..+ +.-..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 34566666666666666665544 55555556666666666666666666666553 33345666666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 004814 263 LELLWEMQGRGCSPNGVTYNV 283 (729)
Q Consensus 263 ~~~~~~m~~~~~~p~~~~~~~ 283 (729)
.+.|++..+. .|+-.+|-.
T Consensus 169 ~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHH
Confidence 6666666653 555555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.006 Score=65.54 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 004814 519 FPPDLITYNVLVHGLCKL-----GSLEEANELLRKMVGDGFIPD-HITYTSIIHASLEM--------GDLRRGRDLFNNM 584 (729)
Q Consensus 519 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 584 (729)
.+.+...|..++.+.... +..+.|..+|+++++.. |+ ...+..+..++... +++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 355566666665554322 12556667777766653 33 23333333322211 1233444444443
Q ss_pred HHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004814 585 LRK-GLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNK 663 (729)
Q Consensus 585 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (729)
... ..+.+...|..+.-.....|++++|...++++.+. .|+...|..++..+...|+.++|.+.++++... .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 332 12445677777777777789999999999999886 467888899999999999999999999998874 5655
Q ss_pred HHHH
Q 004814 664 YTYT 667 (729)
Q Consensus 664 ~~~~ 667 (729)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 5553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.014 Score=51.15 Aligned_cols=153 Identities=13% Similarity=0.061 Sum_probs=97.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 004814 532 GLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLEL 611 (729)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 611 (729)
+..+.=+++...+-..+-.. .-|+...--.+..+..+.|+..+|...|++...--...|......+.++....+++.+
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 33333344444433333333 2456666666777778888888888888877765445667777777777777888888
Q ss_pred HHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 612 AFMYFSEMQVKG---IRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 612 A~~~~~~~~~~g---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
|...++.+.+.. -.|| +.-.+...|...|+..+|..-|+..... -|+...-......+.++|+.++|..-+..
T Consensus 143 a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 888888777652 2233 3345666777788888888888877774 44444333334446677777777665555
Q ss_pred HH
Q 004814 689 ML 690 (729)
Q Consensus 689 m~ 690 (729)
..
T Consensus 219 v~ 220 (251)
T COG4700 219 VV 220 (251)
T ss_pred HH
Confidence 54
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0044 Score=59.29 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=85.1
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 004814 582 NNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLR---RIDQAYGLFIDMEEEG 658 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g 658 (729)
+.-+..+ +.|...|..|..+|...|+.+.|..-|.+..+. -.+|+..+..+..++..+. ...++..+|++++..+
T Consensus 146 e~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 146 ETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 3334443 677888888888888888888888888888876 2346666667766655443 3567888888888864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 659 ILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 659 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
+-|..+...|...+...|++.+|...|+.|+ ..-|....+..+
T Consensus 224 -~~~iral~lLA~~afe~g~~~~A~~~Wq~lL--~~lp~~~~rr~~ 266 (287)
T COG4235 224 -PANIRALSLLAFAAFEQGDYAEAAAAWQMLL--DLLPADDPRRSL 266 (287)
T ss_pred -CccHHHHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCCCchHHH
Confidence 5566677777888888888888888888888 445544445555
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.002 Score=58.48 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
......|..++..+...|++++|...+++++...++. .....++..+..+|.+.|++++|+..+++++
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~------------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP------------YDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445667777777888888888888888877654321 0123466677777888888888888888877
Q ss_pred HCCCCCChHhHHHHHHHHH
Q 004814 201 RNGLLPDVKNCNRIIKVLR 219 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~ 219 (729)
+..+. ...+++.+..++.
T Consensus 100 ~~~~~-~~~~~~~la~i~~ 117 (168)
T CHL00033 100 ERNPF-LPQALNNMAVICH 117 (168)
T ss_pred HhCcC-cHHHHHHHHHHHH
Confidence 65432 3344555555555
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0051 Score=51.36 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC----hhhHHHHH
Q 004814 177 DLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS----IVTYNTML 250 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li 250 (729)
..+..++-..|+.++|+.+|++.+..|+... ...+..+...|...|++++|..++++..... |+ ......+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHH
Confidence 3456677788888999999999988886644 2345567777888888888888888877642 32 22223334
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 251 DSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGF 288 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 288 (729)
-++...|+.++|++.+-..... +...|.--|..|
T Consensus 83 l~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~y 116 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFY 116 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4566778888888777655442 333454444444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00016 Score=44.15 Aligned_cols=29 Identities=48% Similarity=0.960 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRG 273 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 273 (729)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0011 Score=65.14 Aligned_cols=285 Identities=16% Similarity=0.099 Sum_probs=149.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHH--h--CCC-ccChhhHHHHHH
Q 004814 251 DSFCKEGEMQEALELLWEMQGRGCSPNGV----TYNVLITGFSRNGELEQARGLIRDML--K--LGL-KVSAHSYNPIIC 321 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~--~--~~~-~~~~~~~~~li~ 321 (729)
.-+|+.|+.+....+|+...+.|-. |.. .|.-|.++|.-.+++++|.+....=+ . .|- .-...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4588889999999999888887633 433 35556667777778888877654321 1 110 112233344555
Q ss_pred HHHhCCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 004814 322 GYSEKGLLVEALNLEEEMV----TRGVA-PTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRS 396 (729)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 396 (729)
.+--.|.+++|+-...+-. +.|-. .....+-.+...|...|+.-.... -.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------
Confidence 5555666666654433221 11100 011222223444443332100000 000011011100
Q ss_pred CCHHHHHHHHHHH----hhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhc
Q 004814 397 GNIGEAFLLFDEL----RSRNLV-PTVVTYNTLIDGLCRYGDLEVAQQLKENMIN----QGI-LPDVITYTIMVNGSCKM 466 (729)
Q Consensus 397 g~~~~A~~l~~~m----~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~ 466 (729)
..++.|.+.|.+= .+.|-. .--..|..|.+.|.-.|+++.|+...+.-+. -|- ......+..+.+++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 0123333333321 111100 1124566666677777888888876654332 121 12345677778888888
Q ss_pred CCHHHHHHHHHHHHHC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhc
Q 004814 467 GNLSMAREFFNEMLRK----GL-QPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK-----GFPPDLITYNVLVHGLCKL 536 (729)
Q Consensus 467 g~~~~A~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----~~~~~~~~~~~li~~~~~~ 536 (729)
|+++.|.+.|+..... |- .........+...|.-..++++|+..+..-+.. +..-...++.+|..++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 8888888887765432 21 112344455666666667778888777654321 1123456778888888888
Q ss_pred CCHHHHHHHHHHHHh
Q 004814 537 GSLEEANELLRKMVG 551 (729)
Q Consensus 537 g~~~~A~~~~~~~~~ 551 (729)
|..++|+.+.+..++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888877765543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00037 Score=51.54 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=38.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 634 LINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 634 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
++..+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|...|++++ ...|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL--ELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--HHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcC
Confidence 3455666777777777777777653 3345566667777777777777777777776 44444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00058 Score=51.22 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKS-MVEQCLLVFNKMLR 201 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 201 (729)
++.+|..++.++...|++++|+..|+++++.+|+ +..++..++.+|.+.| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---------------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---------------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---------------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567777888888888888888888888877766 4667777777788877 67888888777776
Q ss_pred C
Q 004814 202 N 202 (729)
Q Consensus 202 ~ 202 (729)
.
T Consensus 67 l 67 (69)
T PF13414_consen 67 L 67 (69)
T ss_dssp H
T ss_pred c
Confidence 4
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0022 Score=51.32 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=50.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHHHHCC--------ChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGL-LPDVKNCNRIIKVLRDNG--------FSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~l~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
.+..+...+++.....+|+.+++.|+ .|++..|+.++.+..++. +.-+.+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455888888888888888888 788888888887766543 223445566666666666666666666
Q ss_pred HHHHHh
Q 004814 250 LDSFCK 255 (729)
Q Consensus 250 i~~~~~ 255 (729)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 655543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.074 Score=51.25 Aligned_cols=58 Identities=7% Similarity=-0.050 Sum_probs=28.1
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 214 IIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTY---NTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 214 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
....+...|++++|.+.|+.+...- +-+..+. -.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344444555555555555555432 1112221 23445555566666666666655554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0023 Score=63.25 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 210 NCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK-EGEMQEALELLWEMQGRGCSPNGVTYNVLITGF 288 (729)
Q Consensus 210 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 288 (729)
+|..+++...+.+..+.|+.+|.+..+.+ ..+...|......-.+ .++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34455555555555555566665555432 2222333333333222 34444466666655554 344555555555555
Q ss_pred HhCCCHHHHHHHHHHHHhCCCcc---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004814 289 SRNGELEQARGLIRDMLKLGLKV---SAHSYNPIICGYSEKGLLVEALNLEEEMVT 341 (729)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (729)
.+.|+.+.|+.+|++.+.. +.+ ....|...+..-.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666655543 111 123455555555555555555555555444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00049 Score=51.59 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAG-NWQEALRLYKEML 690 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~ 690 (729)
++..|..++..+...|++++|+..|++.++.+ +.+...|..+..++.+.| ++++|++.+++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 45566677777777777777777777777753 334556677777777777 5777777777766
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0056 Score=58.62 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCC---ChhHHHHHHHHHHhCCCCCChhhHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNG---FSVKAREVYRMMGEFGIKPSIVTYNT 248 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 248 (729)
+.+-|..|..+|.+.|+++.|...|.+..+..+. +...+..+..++..+. ...++..+|+++++.+ +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 3444555555555555555555555555543322 3333333333332211 2234445555554443 334444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 249 MLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 249 li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
|...+..+|++.+|...++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444444555555555555555443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.057 Score=47.57 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=91.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-ccChhhHHH
Q 004814 240 KPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGL-KVSAHSYNP 318 (729)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ 318 (729)
.|++..-..|..+....|++.+|...|++....-+..|......+.++....+++.+|...++++.+... ..++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4666666677788888888888888888877654566777777777888888888888888888776531 113345556
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 319 IICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEM 374 (729)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 374 (729)
+.+.+...|++.+|...|+..... .|+...-......+.++|+.++|..-+.++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 677778888888888888877764 344444344456667777776666544443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00021 Score=43.58 Aligned_cols=29 Identities=38% Similarity=0.722 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDMLKLG 308 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 308 (729)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.22 Score=50.38 Aligned_cols=446 Identities=14% Similarity=0.129 Sum_probs=237.9
Q ss_pred HHHHCCChhHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--H
Q 004814 217 VLRDNGFSVKAREVYRMMGEFGIKPS------IVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITG--F 288 (729)
Q Consensus 217 ~l~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~ 288 (729)
.+.+++++.+|.++|.++.+.. ..+ ...-+.++++|.. .+.+.-...+.+..+. .| ...|-.+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 4678899999999999987642 222 2234567777765 4556555566555554 22 2334444433 4
Q ss_pred HhCCCHHHHHHHHHHHHhC--CCcc------------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCHHH
Q 004814 289 SRNGELEQARGLIRDMLKL--GLKV------------SAHSYNPIICGYSEKGLLVEALNLEEEMVTR----GVAPTLAT 350 (729)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~ 350 (729)
.+.|.+++|.+.+..-... +-.+ |-..=+..+..+...|++.++..+++++..+ ...-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4778899998888776654 2111 1111233445556677777777766666553 22345666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 004814 351 YNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR 430 (729)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~ 430 (729)
|+.++-.+.+ ..|-++.+.....=...|.-++-.|.+.=+. ++.-.-..+.|.......++....-
T Consensus 170 yd~~vlmlsr--------SYfLEl~e~~s~dl~pdyYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 170 YDRAVLMLSR--------SYFLELKESMSSDLYPDYYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHHhH--------HHHHHHHHhcccccChHHHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHHh
Confidence 6655544432 2333332211100011233444444332111 1110001123444444444443332
Q ss_pred cC--CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHhhHHHHHHHHHhcCC
Q 004814 431 YG--DLEVAQQLKENMINQGILPDVI-TYTIMVNGSCKMGNLSMAREFFNEMLRKGLQP----DRFAYTTQIAGELKLGD 503 (729)
Q Consensus 431 ~g--~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~ 503 (729)
.. +..--.+++....+.-+.|+-. +...+...+.+ +.+++..+.+.+....+.+ -..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 2223334444443433444432 33344444443 5555555555544331111 23567778888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHH
Q 004814 504 TSEAYRLQEEMLAKGFPPDLITY-------NVLVHGLCKL----GSLEEANELLRKMVGDGFIPDHITYTSIIH---ASL 569 (729)
Q Consensus 504 ~~~A~~l~~~~~~~~~~~~~~~~-------~~li~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~---~~~ 569 (729)
...|...+.-+... .|+...- ..+-+..+.- .+...=+.+++......+. .......++. -+-
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHH
Confidence 99998888776654 2332211 1222333311 1233334555555544322 2222333333 355
Q ss_pred hcCC-HHHHHHHHHHHHHCCCCCChhhHHHHH----HHHHHc---CCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHH
Q 004814 570 EMGD-LRRGRDLFNNMLRKGLSPTLVTYTVLI----HAHAAR---GRLELAFMYFSEMQVKGIRP----NVITYNALING 637 (729)
Q Consensus 570 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~ 637 (729)
+.|. -++|+.+++.+++-. +-|...-|.+. .+|.+. ..+.+-+.+-+-+.+.|+.| +...-|.|.++
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 5665 788999999888753 34444333332 233322 22344444444455667776 34455666655
Q ss_pred --HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 638 --LCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 638 --~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
+..+|++.++.-+-.-+.+ +.|++.+|..++-++....+++||..++..+
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5678999998877666666 6889999999999999999999999998775
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.003 Score=50.58 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=19.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 004814 250 LDSFCKEGEMQEALELLWEMQGRGC-SPNGVTYNVLITGFS 289 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~ 289 (729)
|..+...+++.....+|+.+++.|+ .|++.+|+.++...+
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 3334444555555555555555554 455555555444443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.21 Score=49.44 Aligned_cols=151 Identities=19% Similarity=0.141 Sum_probs=89.7
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH--hcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchH
Q 004814 96 VLNRIREKPRIALRFFRWVETQPGVKRDEFVFCTILEILI--ESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSI 173 (729)
Q Consensus 96 vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~--~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (729)
+++.+-.+|..+-+.|+.-.+..| |..+-..+. ..|+-..|...-.+.-+. +++. -.+
T Consensus 61 lv~~iw~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l---------lssD----qep 120 (531)
T COG3898 61 LVRSIWESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL---------LSSD----QEP 120 (531)
T ss_pred HHHHHHhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh---------hhcc----chH
Confidence 334455678888888887765544 334444443 456666676655543321 1110 012
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHH----HHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIK----VLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
-+...-.+.-.-.|++++|.+-|+.|.. |+.+-..=+. .-.+.|..+.|.+.-+.....- +.-...+...
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~At 194 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARAT 194 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHH
Confidence 2222333444567888888888888886 3333222222 2245777777777777766543 3345677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 004814 250 LDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
+...|..|+++.|+++.+.-+..
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHH
Confidence 88888888888888888776553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.16 Score=47.36 Aligned_cols=137 Identities=13% Similarity=0.095 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHH
Q 004814 563 SIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVIT-----YNALING 637 (729)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-----~~~l~~~ 637 (729)
.++..+.-.|.+.-...++++.++...+.++.....|++.-.+.|+.+.|...|+...+..-..|..+ .......
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 34444444455555555555555544344455555555555555555555555554433211112111 2222233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004814 638 LCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHS 702 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~ 702 (729)
|.-++++.+|...+.++...+ +.|+...+.-.-++.-.|+..+|++.++.|+ ...|...+..
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~--~~~P~~~l~e 323 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMV--QQDPRHYLHE 323 (366)
T ss_pred eecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHh--ccCCccchhh
Confidence 444455555555555555543 3334444444334444556666666666665 4444444333
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.034 Score=52.11 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
....-..+..+...|++.+|...|+++....|.+ .......-.++.+|.+.|++++|...+++.++.-
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344455566677788888888887777765542 2345566677777788888888888888877654
Q ss_pred C
Q 004814 204 L 204 (729)
Q Consensus 204 ~ 204 (729)
+
T Consensus 73 P 73 (203)
T PF13525_consen 73 P 73 (203)
T ss_dssp T
T ss_pred C
Confidence 3
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0014 Score=48.38 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=24.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 182 IYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
.+.+.|++++|...|+++++..+. +...+..+..++...|++++|..+|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444433 444444444444444444444444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.27 Score=48.69 Aligned_cols=252 Identities=17% Similarity=0.186 Sum_probs=148.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 004814 431 YGDLEVAQQLKENMINQGILPDVITYTIMVN----GSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSE 506 (729)
Q Consensus 431 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 506 (729)
.|+.+.|.+-|+.|.. |+.+-..=++ .-.+.|+.+.|..+-++....-.. -.......+...+..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 4666666666666654 2222211111 123456666666666665554221 24556666666666777777
Q ss_pred HHHHHHHHHHCC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 004814 507 AYRLQEEMLAKG-FPPDLIT--YNVLVHGLC---KLGSLEEANELLRKMVGDGFIPDHITY-TSIIHASLEMGDLRRGRD 579 (729)
Q Consensus 507 A~~l~~~~~~~~-~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~ 579 (729)
|+++++.-.... +.++..- -..|+.+-. -..+...|...-.+..+. .||..-- ..-..++.+.|++.++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 776666544331 2222211 112221111 122455666655555553 4554322 233467889999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 580 LFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK-GIRP-NVITYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
+++.+-+.. |.+.++.. ..+.+.|+. ++.-+++.... .++| +..+...+..+-...|++..|..--+....
T Consensus 285 ilE~aWK~e--PHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r- 357 (531)
T COG3898 285 ILETAWKAE--PHPDIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR- 357 (531)
T ss_pred HHHHHHhcC--CChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence 999999874 55544432 334455553 33333333221 1344 455667777888888999988887777665
Q ss_pred CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCH
Q 004814 658 GILPNKYTYTILINENCN-AGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 658 g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
..|....|..|.+.-.. .|+-.++...+-+.+...-.|+.
T Consensus 358 -~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 358 -EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred -hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 47888888888877655 49999999999999877666654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=49.27 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=32.5
Q ss_pred HhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 135 IESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
.+.|++++|...+++++..+|+ +..+...++.+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD---------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT---------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556666666666666666554 35555566666666666666666666666543
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.023 Score=47.44 Aligned_cols=54 Identities=28% Similarity=0.257 Sum_probs=22.5
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCccC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004814 288 FSRNGELEQARGLIRDMLKLGLKVS--AHSYNPIICGYSEKGLLVEALNLEEEMVT 341 (729)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (729)
+-..|+.++|+.+|++....|.... ...+..+...+...|++++|+.++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444433221 12333344444444444444444444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.23 Score=46.44 Aligned_cols=236 Identities=14% Similarity=0.088 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhh-hHHH---hhcCCCC--cchHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGI-LDVL---IGGGLSS--CVSIKILDLLLLIYTKKSMVEQCLLVFNK 198 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~-~~~l---~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 198 (729)
..|+.-+.++.+-+++++|..-++..-..+.... .+.. .-+...+ +.+.+..... +..+.|...+.+.-+..
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe--~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAE--LQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHH--HHHhcCCcHHHHHHHHH
Confidence 4467778889999999998877666554442211 0100 0000011 1222322222 22344555555544444
Q ss_pred HHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 004814 199 MLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNG 278 (729)
Q Consensus 199 ~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 278 (729)
+... ...+++.+......+..+..+++=. ....+.++.++...|.+.-...++.+..+...+.+.
T Consensus 148 L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p 212 (366)
T KOG2796|consen 148 LKTV--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP 212 (366)
T ss_pred HHHH--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH
Confidence 3321 0112222222222344444444332 234566777777777888888888888877556667
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHH-----HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 279 VTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPII-----CGYSEKGLLVEALNLEEEMVTRGVAPTLATYNI 353 (729)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 353 (729)
.....|++.-.+.||.+.|...|++..+..-..+..+.+.++ ..|.-.+++.+|...+.+....... |+..-|.
T Consensus 213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~Nn 291 (366)
T KOG2796|consen 213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNN 291 (366)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhch
Confidence 777777788788888888888888776543333333333332 2344455566666666555554322 3333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 354 LIYGLCKWGRVSDARHRFFEMLRKN 378 (729)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~~~~~~ 378 (729)
-.-+..-.|+..+|.+.++.|....
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3333333466666666666666544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.011 Score=53.77 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=51.1
Q ss_pred CChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhh
Q 004814 241 PSIVTYNTMLDSFCKE-----GEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHS 315 (729)
Q Consensus 241 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 315 (729)
.+-.+|..+++.|.+. |.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 4555566666555532 3344444455555555555555555555555432 2111 0111111100
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 316 YNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWG 362 (729)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 362 (729)
-.-.+.+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 114 --------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 --------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred --------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 011233456666677777777677777766666664443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.38 Score=48.28 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 004814 352 NILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRY 431 (729)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~ 431 (729)
+..+.-+...|+...|.++-.+..- ||..-|...+.+++..+++++-.++-.. . -++.-|..++..|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 3344555556666666655544432 6666666666666666666655543321 1 1335566666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 432 GDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREF 475 (729)
Q Consensus 432 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (729)
|+..+|..+...+ + +..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 6666666665541 1 13344556666666666554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.8 Score=49.50 Aligned_cols=345 Identities=14% Similarity=0.103 Sum_probs=186.3
Q ss_pred CCCccChhhHH-----HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCC
Q 004814 307 LGLKVSAHSYN-----PIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGR--VSDARHRFFEMLRKNV 379 (729)
Q Consensus 307 ~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~ 379 (729)
-|++.+..-|. .+|+-+...+.+..|.++-..+...-... ...|.....-+.+..+ -+++.+.+++-+..-.
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 45555554443 45667778888888888877765432221 4566667777776643 2334444433333222
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 380 IPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLV----PTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVIT 455 (729)
Q Consensus 380 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 455 (729)
-...+|..+.......|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+.++- +...
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 34556777777777889888888877532111100 011223334444555555555555555554321 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--HHHHC-CCCCCHHHHHHHHHH
Q 004814 456 YTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQE--EMLAK-GFPPDLITYNVLVHG 532 (729)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~--~~~~~-~~~~~~~~~~~li~~ 532 (729)
+.. ...+...|..+|.+..++. |..+ +-..|. +++-.++...+. ...+. .+.+-........+.
T Consensus 581 l~~------~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 581 LFM------TLRNQPLALSLYRQFMRHQ---DRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHH------HHHhchhhhHHHHHHHHhh---chhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 111 1223455666666665531 1111 112222 222222222211 10000 011112222233444
Q ss_pred HHhcCCH---HHHH-------HHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004814 533 LCKLGSL---EEAN-------ELLRKMVG-DGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIH 601 (729)
Q Consensus 533 ~~~~g~~---~~A~-------~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 601 (729)
+.+.... ++|. .+.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence 4443331 1111 11111111 1212222344455556777899999998876654 478888888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 602 AHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQE 681 (729)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 681 (729)
+++..+++++-+++-+.+. .+.-|.-.+.+|.+.|+.+||.+++-+... .. -...+|.+.|++.+
T Consensus 724 aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~e 788 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKE 788 (829)
T ss_pred HHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHH
Confidence 9999999998777655543 245577788899999999999998865432 11 56778889999999
Q ss_pred HHHHHHH
Q 004814 682 ALRLYKE 688 (729)
Q Consensus 682 A~~~~~~ 688 (729)
|.+.--+
T Consensus 789 Aad~A~~ 795 (829)
T KOG2280|consen 789 AADLAAE 795 (829)
T ss_pred HHHHHHH
Confidence 8876544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0049 Score=46.68 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=45.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSA 703 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ 703 (729)
..|.+.+++++|.+.++.+++.+ +.+...|...+.++.+.|++++|.+.+++.+ ...|+......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l--~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL--ELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH--HHCCCcHHHHH
Confidence 45677777788888887777753 4455667777777777888888888888777 55555544433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.54 Score=47.20 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLC 639 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 639 (729)
+.+..+.-+...|+...|.++-.+.. -|+...|-..+.+++..++|++-.++-.. + -.++-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 44555666777888888888765552 47888888889999999999887776432 1 13467888888899
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 640 RLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
+.|+..+|..+..++ + +..-+..|.+.|+|.+|.+..-+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999988887762 1 244566778899998888775554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.1 Score=48.84 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
..+-..+..+...|++++|...|+++...-+... ..+...++.++.+.|+++.|...|++.++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444456667788899999999999887644322 234556777888888888888888887764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0094 Score=54.21 Aligned_cols=90 Identities=22% Similarity=0.346 Sum_probs=60.2
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004814 185 KKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALE 264 (729)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 264 (729)
+.|.++=....+.+|.+.|+..|..+|+.|+.++=+ |.+- | ...+.++-.-| -.+-+-|++
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p-~n~fQ~~F~hy--p~Qq~c~i~ 124 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------P-RNFFQAEFMHY--PRQQECAID 124 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------c-ccHHHHHhccC--cHHHHHHHH
Confidence 456777777888899999999999999999987744 2221 1 11111111111 134556788
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 004814 265 LLWEMQGRGCSPNGVTYNVLITGFSRNGE 293 (729)
Q Consensus 265 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 293 (729)
++++|...|+-||..++..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888766654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.021 Score=55.49 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHH
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVKGIRPN----VITYNALINGLCRLRRIDQAYGLFIDMEEEGILP---NKYTYTI 668 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ 668 (729)
|......+.+.|++++|...|+.+++.. |+ ...+..++.+|...|++++|...|+++++.- +. ....+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHHH
Confidence 4443333455677777777777776642 32 2355667777777777777777777776541 21 2334445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004814 669 LINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
++.++...|++++|..+|++++
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 5666667777777777777776
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.69 Score=46.85 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH-HHH
Q 004814 522 DLITYNVLVHGLCKLGSLEEANELLRKMVGDG-FIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTY-TVL 599 (729)
Q Consensus 522 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 599 (729)
-..+|..+++...+..-.+.|..+|-++.+.+ ..+++..+++++..++ .|+...|..+|+.-+.. -||...| +..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 35667778888888888999999999999988 5678888888888655 68888999999876665 3444443 456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPN--VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILI 670 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 670 (729)
+.-+...++-+.|..+|+..+++ +..+ ..+|..+++--..-|++..|..+=+.|.+. .|...+.....
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~ 542 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT 542 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence 66777889999999999976654 2223 457889999888999999999888888774 44443333333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.24 Score=52.21 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HH-----
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKY-TY----- 666 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~----- 666 (729)
..+...+..-+.+...+.-|-++|.+|-+. ..++......+++++|..+-++..+ +.||.. .|
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhh
Confidence 344444444444555666777777766432 3556667777778887777776665 234432 12
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 667 -----TILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 667 -----~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.-.-.+|.++|+-.||.++++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 2223577888999999999988863
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.028 Score=54.56 Aligned_cols=98 Identities=7% Similarity=0.009 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHhCC--CCCChhhHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGEFG--IKPSIVTYNTML 250 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li 250 (729)
.|+..+..+.+.|++++|+..|+.+++.-+... ..++..+...|...|++++|...|+.+++.- -+.....+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555666666666666666543311 2344455566666666666666666665431 011133333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 004814 251 DSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
..+...|+.++|.++|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4555556666666666655554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.077 Score=46.37 Aligned_cols=90 Identities=11% Similarity=-0.048 Sum_probs=65.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNW 679 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 679 (729)
..-+...|++++|..+|.-+...+. -|..-+..|..++-..+++++|+..|......+ ..|+..+.....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 3345577888888888887766543 256666777777778888888888887776654 34555666677788888888
Q ss_pred HHHHHHHHHHHH
Q 004814 680 QEALRLYKEMLD 691 (729)
Q Consensus 680 ~~A~~~~~~m~~ 691 (729)
++|+..|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888888874
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.84 Score=46.33 Aligned_cols=172 Identities=13% Similarity=0.092 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004814 492 TTQIAGELKLGDTSEAYRLQEEMLAKG---FPPDLITYNVLVHGLCK---LGSLEEANELLRKMVGDGFIPDHITYTSII 565 (729)
Q Consensus 492 ~~li~~~~~~g~~~~A~~l~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 565 (729)
..++-+|....+++..+++.+.+...- +......-...+-++.+ .|+.++|++++..++.....++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445666666666666666665431 11122222233444445 666677777666654444455666665555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRID 645 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 645 (729)
..|... ..+.+ ..|... .++|+..|.+.-+. .||..+--.++..+...|.-.
T Consensus 225 RIyKD~------------~~~s~-~~d~~~-------------ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 225 RIYKDL------------FLESN-FTDRES-------------LDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHH------------HHHcC-ccchHH-------------HHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcc
Confidence 544211 01111 011111 45555555555442 233322112222222222211
Q ss_pred ----HHHHHH----HHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 646 ----QAYGLF----IDMEEEGI---LPNKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 646 ----~A~~~~----~~m~~~g~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
+..++- ..+.++|. ..+...+.+++.++.-.|+.++|.+.+++|..
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 112211 11112222 23444556778888888888888888888883
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.65 E-value=1.4 Score=48.29 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHh--HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKN--CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
.+.....-+....+..+++.|+.+...- +..++... .......+.+.|++++|...|-+-+..- .| ..+
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~V 403 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEV 403 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHH
Confidence 3444555666777777777777665432 22222211 2223445566777777777776655421 11 123
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 250 LDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRD 303 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (729)
+.-|....+..+--..++.+.+.|.. +...-..|+..|.+.++.++-.+..+.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 45555555666666666676666654 333335566777777776665555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.16 Score=44.76 Aligned_cols=70 Identities=23% Similarity=0.283 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML-----DREIEPDYCT 700 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~pd~~~ 700 (729)
....++..+...|++++|..+.+++.... |-|...|..++.+|...|+..+|.+.|+++. +.|+.|...+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44566667777888888888888888764 5567788888888888888888888877764 3477776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0074 Score=45.70 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=30.4
Q ss_pred HHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 132 EILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 132 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
+++.+.+++++|...+++++..+|+ ++..+...+.+|.+.|++++|...|++.++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD---------------DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc---------------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3455555555555555555555544 34444445555555555555555555555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.034 Score=55.48 Aligned_cols=125 Identities=13% Similarity=0.088 Sum_probs=69.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 563 SIIHASLEMGDLRRGRDLFNNMLRK-----GLSP---------TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV 628 (729)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 628 (729)
.-.+.+.+.|++..|..-|+++.+. +.++ -..+++.+.-+|.+.+++.+|++..++.++.+ ++|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 3466788889999999988886653 1111 12234455555666666666666666666653 2355
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHH-HHHHHHHHHH
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNK-YTYTILINENCNAGNWQ-EALRLYKEML 690 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~-~A~~~~~~m~ 690 (729)
...-.-+.+|...|+++.|+..|+++++. .|+. .+-..|+..-.+....+ ...++|..|.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555556666666666666666666663 3332 33333433333333322 2355566665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.01 Score=45.57 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEE--GIL---PN-KYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..++.++...|++++|++.+++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666777777777777777766542 011 11 2356666677777777777777777765
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.075 Score=54.42 Aligned_cols=70 Identities=11% Similarity=-0.039 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+...++.+..+|.+.|++++|...++++++.+|+.. .....|..++.+|.+.|++++|+..+++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a------------eA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD------------EAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45788899999999999999999999999999988720 001358889999999999999999999999
Q ss_pred HC
Q 004814 201 RN 202 (729)
Q Consensus 201 ~~ 202 (729)
+.
T Consensus 140 el 141 (453)
T PLN03098 140 RD 141 (453)
T ss_pred Hh
Confidence 85
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.53 Score=46.25 Aligned_cols=127 Identities=13% Similarity=0.039 Sum_probs=57.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-----h
Q 004814 529 LVHGLCKLGSLEEANELLRKMVGDGFI-----PDHITYTSIIHASLEMGDLRRGRDLFNNMLRK----GLSPTL-----V 594 (729)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-----~ 594 (729)
+..++...+.++++++.|+...+.... ....++..+...|.+..|+++|.-+..+..+. ++..-. .
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 344444445555555555555432111 11234555555555555655555444433321 111101 1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQVK----GIRP-NVITYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
+...+.-++...|+...|.+..++..+. |-.+ .......+.+.|...|+.+.|+.-|+.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1222333445556665565555554432 2111 11223445566666666666665555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.085 Score=46.11 Aligned_cols=92 Identities=9% Similarity=-0.047 Sum_probs=67.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (729)
.+--+...|++++|..+|.-+.-.++. +..-|..|..++...+++++|+..|......+ ..|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 344456788888888888888776655 66667777788888888888888888776655 3455566667778888888
Q ss_pred HHHHHHHHHHHHhC
Q 004814 259 MQEALELLWEMQGR 272 (729)
Q Consensus 259 ~~~A~~~~~~m~~~ 272 (729)
.+.|...|+...+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888777764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.18 E-value=2.7 Score=46.31 Aligned_cols=184 Identities=14% Similarity=0.094 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
.-....-+.++.+...++-|+.+.+.-- .+++ .-..+...-+.-+.+.|++++|..-|-+.+..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~-~d~d--------------~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~- 397 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQH-LDED--------------TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF- 397 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcC-CCHH--------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-
Confidence 3445567778888888888887665411 1111 12334444555567899999999888777643
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNV 283 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 283 (729)
. ++ ..++.-+.+..+..+-..+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+.-. .|.. ..-...
T Consensus 398 -l-e~---s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~ 468 (933)
T KOG2114|consen 398 -L-EP---SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVET 468 (933)
T ss_pred -C-Ch---HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHH
Confidence 1 22 2456666666677777788888888884 466667889999999999998877776554 2211 111345
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 284 LITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMV 340 (729)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (729)
.+..+.+.+-.++|.-+-.+... +...... .+-..|++++|++.+..+.
T Consensus 469 al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 469 ALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 66777777777887776655433 2333333 3456788999999887664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.8 Score=48.45 Aligned_cols=56 Identities=18% Similarity=0.070 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 411 (729)
+..+...+...+.+...+.-|-++|..|-. ...++..+...+++++|+.+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 334444444555555666666666666533 22355566667777777776665443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=1.3 Score=41.98 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 004814 126 VFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL 205 (729)
Q Consensus 126 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 205 (729)
.|+.. ....+.|++++|...|+.+..+.|. ++.+..+...++-++.+.+++++|+..+++..+.-+.
T Consensus 37 LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 37 LYNEG-LTELQKGNYEEAIKYFEALDSRHPF------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHcCCC------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence 34443 3456788999999999988877665 2345777888888899999999999999999886654
Q ss_pred CChHhHHHHHHHHH
Q 004814 206 PDVKNCNRIIKVLR 219 (729)
Q Consensus 206 ~~~~~~~~ll~~l~ 219 (729)
-....|..-+.++.
T Consensus 104 ~~n~dY~~YlkgLs 117 (254)
T COG4105 104 HPNADYAYYLKGLS 117 (254)
T ss_pred CCChhHHHHHHHHH
Confidence 33344555555554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.025 Score=43.43 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
..+|+.+..++.+.|++++|+..++++++. -... +.+......++..++.+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~-------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQL-------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHT-------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHH-------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467899999999999999999999998875 2100 001111355677788888888888888888887764
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.4 Score=41.90 Aligned_cols=198 Identities=23% Similarity=0.145 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 004814 489 FAYTTQIAGELKLGDTSEAYRLQEEMLAK-GFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIH- 566 (729)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~- 566 (729)
.........+...+....+...+...... ..+.....+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555666666666665555432 223344555555556666666666776666666543332 111222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 004814 567 ASLEMGDLRRGRDLFNNMLRKGL--SPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP-NVITYNALINGLCRLRR 643 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 643 (729)
.+...|+++.|...+++...... ......+......+...++.++|...+.++.... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777777777777654210 0123333344444566777777777777777652 22 35566777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 644 IDQAYGLFIDMEEEGILPN-KYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+++|...+...... .|+ ...+..+...+...|.++++...+.+..
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 78888877777764 233 3444444555556667788887777777
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.03 E-value=1 Score=45.69 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 452 DVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
+-..+.+++.+..-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3444455566666666666666666666654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.071 Score=53.28 Aligned_cols=98 Identities=18% Similarity=0.097 Sum_probs=47.7
Q ss_pred HHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCC-------cchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004814 132 EILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSS-------CVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL 204 (729)
Q Consensus 132 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 204 (729)
..+.+.|+|..|..-|++++..-... ...+. ..-..++..|+-+|.|.+.+.+|++.-++.++.++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~-------~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYR-------RSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhcc-------ccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 35677888888888888876542110 00000 00122333444444555555555555555554443
Q ss_pred CCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 205 LPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 205 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
. |+.+...-..++...|+++.|+..|+++++.
T Consensus 289 ~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 289 N-NVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred C-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 2 4444444444444445555555555544443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.24 Score=52.91 Aligned_cols=118 Identities=17% Similarity=0.111 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChHhHHH-HHHHHHHCCChhHHHHHHHHHHhC--CC-CCChhhHHHHHHHHHhcCCHHH
Q 004814 186 KSMVEQCLLVFNKMLRNGLLPDVKNCNR-IIKVLRDNGFSVKAREVYRMMGEF--GI-KPSIVTYNTMLDSFCKEGEMQE 261 (729)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~l~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~li~~~~~~g~~~~ 261 (729)
....+.|.++++.+.+. .|+...|.. -.+.+...|+.++|++.|+..... .. +.....+--+...++-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34566666666666664 244444433 344556667777777777754431 00 1122334445566777788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-HHHHhCCCH-------HHHHHHHHHHHh
Q 004814 262 ALELLWEMQGRGCSPNGVTYNVLI-TGFSRNGEL-------EQARGLIRDMLK 306 (729)
Q Consensus 262 A~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~~ 306 (729)
|.+.|..+.+.. .-....|.-+. ..+...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888877652 11233333332 233455666 777788777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.58 Score=48.24 Aligned_cols=147 Identities=8% Similarity=0.083 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 004814 538 SLEEANELLRKMVGD-GFIPD-HITYTSIIHASLE---------MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR 606 (729)
Q Consensus 538 ~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 606 (729)
..+.|..+|.+.+.. ...|+ ...|..+..++.. ..+..+|.++-++..+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 467788899988822 23444 3455555544332 224557777888888876 67888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHH
Q 004814 607 GRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKY---TYTILINENCNAGNWQEA 682 (729)
Q Consensus 607 g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A 682 (729)
|+++.|...|+++... .|| ...|......+.-.|+.++|.+.+++..+. .|... .....++.|+.. ..++|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhh
Confidence 8899999999999885 454 456777777778889999999999998774 44432 223334455544 56778
Q ss_pred HHHHHHHH
Q 004814 683 LRLYKEML 690 (729)
Q Consensus 683 ~~~~~~m~ 690 (729)
+++|-+-.
T Consensus 427 ~~~~~~~~ 434 (458)
T PRK11906 427 IKLYYKET 434 (458)
T ss_pred HHHHhhcc
Confidence 87776644
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.53 Score=45.71 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=89.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 465 KMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK---GFPPDLITYNVLVHGLCKLGSLEE 541 (729)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~ 541 (729)
..|+..+|-..++++++.- +.|..++...-.++.-.|+.+.-...+++++.. +.|-....-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4677777777777777652 335566666666777777777777777776654 222222333344445566777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 542 ANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT---LVTYTVLIHAHAARGRLELAFMYFSE 618 (729)
Q Consensus 542 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (729)
|++.-++..+.+. .|...-.+..+.+...|+..++.++..+-...=-..+ ...|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 7777777776652 3555666666667777777777777654332200000 11122222234445677777777764
Q ss_pred H
Q 004814 619 M 619 (729)
Q Consensus 619 ~ 619 (729)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.052 Score=47.83 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=22.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDM 654 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 654 (729)
++..+...|++++|.++.+.+.... +.|...|..++.+|...|+..+|.+.|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3333444444444444444444431 113334444444444444444444444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.87 E-value=3.1 Score=44.24 Aligned_cols=186 Identities=13% Similarity=0.061 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 452 DVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVH 531 (729)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~ 531 (729)
+..+|..-+..-.+.|+.+...-+|++..-.- ..=...|-..+.-....|+.+-|..++....+--.+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 45677777777788888888888888776421 11122333344444455888888777766655433333322221222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCChhhHHHHHHH-----
Q 004814 532 GLCKLGSLEEANELLRKMVGDGFIPDHI-TYTSIIHASLEMGDLRRGRD---LFNNMLRKGLSPTLVTYTVLIHA----- 602 (729)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~~~~~~~~~l~~~----- 602 (729)
..-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+.. ++...... ..+..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHH
Confidence 2334678999999999888763 4433 22223445567788777773 33332222 2222222222222
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRR 643 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 643 (729)
+.-.++.+.|..++.++.+. .+++...|..++......+.
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 33467889999999999886 55677778888777666653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.64 Score=48.02 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 597 TVLIHAHAARGRLELAFMYFSEMQVKGIR-PNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
..+..++.+.|+.+||++.+++|.+.... .+......|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555555667777777777777654211 1223455666777777777777777766544
|
The molecular function of this protein is uncertain. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.18 Score=51.77 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 556 PDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTL----VTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 556 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
.+...++.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|.+.|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356678888899999999999999999988874 543 35888899999999999999999998875
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.13 Score=48.96 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-C-ChHhHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL-P-DVKNCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
+..+.+|...+...|++++|..+|..+.+.-+. | -+.++..|..++.+.|+.++|...|+++++
T Consensus 178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 178 PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 334444555555555555555555555443221 0 112333344444444444444444444444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.5 Score=42.33 Aligned_cols=119 Identities=17% Similarity=0.095 Sum_probs=47.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 500 KLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRD 579 (729)
Q Consensus 500 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 579 (729)
..|++.+|..+|....... +.+...--.++.+|...|+.+.|..++..+-..-..........-+..+.+.....+...
T Consensus 146 ~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3444444444444444332 222333334445555555555555555544332111111111122222333333333333
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 580 LFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
+-.+.-.. +.|...-..+...+...|+.++|.+.+-.+.+
T Consensus 225 l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 225 LQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33322221 22444444455555555555555554444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.45 Score=39.40 Aligned_cols=90 Identities=21% Similarity=0.100 Sum_probs=49.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHhcC
Q 004814 567 ASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK-GIRPNV---ITYNALINGLCRLR 642 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~---~~~~~l~~~~~~~g 642 (729)
+....|+++.|++.|.+.+..- +.....||.-..++.-+|+.++|++=+++..+. |.. .. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 3455566666666666665542 445556666666666666666666666666554 211 11 12333334455556
Q ss_pred CHHHHHHHHHHHHHcC
Q 004814 643 RIDQAYGLFIDMEEEG 658 (729)
Q Consensus 643 ~~~~A~~~~~~m~~~g 658 (729)
+.+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666665554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.65 Score=44.70 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=73.4
Q ss_pred HHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhH
Q 004814 132 EILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNC 211 (729)
Q Consensus 132 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 211 (729)
..+...|++.+|..+|..++...+. +..+--.++.+|...|+++.|..++..+...--.......
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~---------------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l 206 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE---------------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL 206 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc---------------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH
Confidence 3455666777777777766666554 2334455666777777777777777666543211111111
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR--GCSPNGVTYNVLITGFS 289 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~ 289 (729)
..-+..+.+.....+...+-++.... +.|...-..+...+...|+.++|.+.+-.+.++ |.. |...-..++..+.
T Consensus 207 ~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~ 283 (304)
T COG3118 207 QAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHH
Confidence 12233444444444444444444332 335555555666666666666666655555443 222 3334444444444
Q ss_pred hCC
Q 004814 290 RNG 292 (729)
Q Consensus 290 ~~g 292 (729)
-.|
T Consensus 284 ~~g 286 (304)
T COG3118 284 AFG 286 (304)
T ss_pred hcC
Confidence 444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.45 Score=50.14 Aligned_cols=128 Identities=18% Similarity=0.131 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 004814 316 YNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCR 395 (729)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 395 (729)
.+.++..+.+.|..+.|+++-.+-.. -.+...+.|+++.|.++.++. .+...|..|.+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 44445555555555555554322111 123334455555555432221 344555555555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 396 SGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREF 475 (729)
Q Consensus 396 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (729)
.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555554322 2334444555555555555555544443 122333333344555555444
Q ss_pred H
Q 004814 476 F 476 (729)
Q Consensus 476 ~ 476 (729)
+
T Consensus 425 L 425 (443)
T PF04053_consen 425 L 425 (443)
T ss_dssp H
T ss_pred H
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.46 E-value=2.2 Score=39.79 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLC 359 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 359 (729)
.|.-...+|...+++++|..-+.+..+.- +.+ ..+.... ..++.|.-+.+++.+. .--+..|+--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Enn-rslfhAA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENN-RSLFHAA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-Hhc-ccHHHHH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 34444556666667777766666655321 111 1111111 2233444444444432 112234455556666
Q ss_pred hcCCHHHHHHHHHHH
Q 004814 360 KWGRVSDARHRFFEM 374 (729)
Q Consensus 360 ~~g~~~~A~~~~~~~ 374 (729)
.+|..+.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 666666665555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.2 Score=37.10 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL 589 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 589 (729)
..++.+.+.|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44455555666666666666655422 45566666666666666666666666666666653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=2 Score=44.41 Aligned_cols=160 Identities=14% Similarity=0.081 Sum_probs=111.1
Q ss_pred HHHHHHHHh-----cCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCC
Q 004814 492 TTQIAGELK-----LGDTSEAYRLQEEMLAK-GFPP-DLITYNVLVHGLCKL---------GSLEEANELLRKMVGDGFI 555 (729)
Q Consensus 492 ~~li~~~~~-----~g~~~~A~~l~~~~~~~-~~~~-~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~ 555 (729)
..++.+... ....+.|..+|.+.... ...| ....|..+..++... ....+|.++-++..+.+.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~- 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT- 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-
Confidence 445555443 22457788889888822 1233 356666666555432 235677888888888874
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHH
Q 004814 556 PDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI---TYN 632 (729)
Q Consensus 556 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~ 632 (729)
.|......+..+..-.++.+.|...|++....+ |....+|........-.|+.++|.+.+++..+. .|... ...
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~ 412 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIK 412 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHH
Confidence 488888888888888888999999999999875 445677777777888899999999999998875 34322 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 633 ALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 633 ~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
..++.|+.. .+++|++++-+-.+
T Consensus 413 ~~~~~~~~~-~~~~~~~~~~~~~~ 435 (458)
T PRK11906 413 ECVDMYVPN-PLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHcCC-chhhhHHHHhhccc
Confidence 445566665 56888888765443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.74 Score=45.27 Aligned_cols=228 Identities=15% Similarity=0.138 Sum_probs=146.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHh
Q 004814 463 SCKMGNLSMAREFFNEMLRKG--LQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK--GFPPD---LITYNVLVHGLCK 535 (729)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~---~~~~~~li~~~~~ 535 (729)
+....+.++|+..+.+.+.+- ......++..+..+.+..|.+++++..--..+.. ..... ...|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999998877651 0111234555567777888888776543322221 11111 2344445555555
Q ss_pred cCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C--CChhhHHHHHHHHHHc
Q 004814 536 LGSLEEANELLRKMVGD-GFIP---DHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL---S--PTLVTYTVLIHAHAAR 606 (729)
Q Consensus 536 ~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~ 606 (729)
..++.+++.+-..-... |..| -.....++..++...+.++++++.|+...+... . ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555665555544432 2222 113344567778888899999999998876411 1 1245788999999999
Q ss_pred CCHHHHHHHHHHHHHC----CCCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHH
Q 004814 607 GRLELAFMYFSEMQVK----GIRPNVIT-----YNALINGLCRLRRIDQAYGLFIDMEE----EGILPN-KYTYTILINE 672 (729)
Q Consensus 607 g~~~~A~~~~~~~~~~----g~~p~~~~-----~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~ 672 (729)
.|+++|.-+..++.+. ++..-..- ...|.-++...|++.+|.+.-++..+ .|-.+- ......+.++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999988877653 33211122 34455678889999999998888765 342221 2244577899
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 004814 673 NCNAGNWQEALRLYKEML 690 (729)
Q Consensus 673 ~~~~g~~~~A~~~~~~m~ 690 (729)
|...|+.|.|..-|+++.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 999999999999999997
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.82 Score=48.94 Aligned_cols=160 Identities=19% Similarity=0.170 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDGFIPDHI------TYTSIIHASL----EMGDLRRGRDLFNNMLRKGLSPTLVTYT 597 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 597 (729)
.++....-.|+-+.+++.+.+..+.+-...+. .|..++..++ ...+.+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34444445566666666666555432111111 2233332222 245677888888888876 46655554
Q ss_pred HH-HHHHHHcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHH
Q 004814 598 VL-IHAHAARGRLELAFMYFSEMQVKG--I-RPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTIL-INE 672 (729)
Q Consensus 598 ~l-~~~~~~~g~~~~A~~~~~~~~~~g--~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~ 672 (729)
.. ...+...|++++|++.|+++.... . ......+--++..+.-.+++++|.+.|..+.+.. .-+..+|.-+ +-+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 33 345667888888888888765421 1 1134456667778888889999999999888753 3334444433 334
Q ss_pred HHhcCCH-------HHHHHHHHHHH
Q 004814 673 NCNAGNW-------QEALRLYKEML 690 (729)
Q Consensus 673 ~~~~g~~-------~~A~~~~~~m~ 690 (729)
+...|+. ++|.+++++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4557777 88888888765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.36 Score=41.25 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
...+-.-+....+.|++++|...|+.+..+-|.+ ..+..+...|+.+|.+.|++++|+..+++.++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g------------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG------------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3344444555678899999999999988877652 3356777789999999999999999999999987
Q ss_pred CCCChHhHHHHHHHH
Q 004814 204 LLPDVKNCNRIIKVL 218 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l 218 (729)
+.--..-|-..+.++
T Consensus 78 P~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGL 92 (142)
T ss_pred CCCCCccHHHHHHHH
Confidence 652223344444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.1 Score=39.13 Aligned_cols=175 Identities=15% Similarity=0.077 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHC
Q 004814 142 SAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDN 221 (729)
Q Consensus 142 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 221 (729)
-|+--|.+.+...|. -+.+|+.|.--+...|+++.|.+.|+...+.++.-+-...|.-+ .+.--
T Consensus 83 LAR~DftQaLai~P~---------------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~ 146 (297)
T COG4785 83 LARNDFSQALAIRPD---------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYG 146 (297)
T ss_pred HHhhhhhhhhhcCCC---------------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeec
Confidence 344445556666555 47889999999999999999999999999987653333333333 34456
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004814 222 GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC--KEGEMQEALELL-WEMQGRGCSPNGVTYNVLITGFSRNGELEQAR 298 (729)
Q Consensus 222 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 298 (729)
|++..|.+-|-..-+.+ +.|+ |.+ +..|. ..-++.+|..-+ ++.... |..-|...|..|.- |+.. .+
T Consensus 147 gR~~LAq~d~~~fYQ~D-~~DP--fR~-LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e 216 (297)
T COG4785 147 GRYKLAQDDLLAFYQDD-PNDP--FRS-LWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EE 216 (297)
T ss_pred CchHhhHHHHHHHHhcC-CCCh--HHH-HHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HH
Confidence 88888887777766554 3333 222 22233 234566776544 333332 55555554443321 2111 12
Q ss_pred HHHHHHHhCCC------ccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 299 GLIRDMLKLGL------KVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 299 ~~~~~m~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
.+++++....- +.-..||.-+...+...|+.++|..+|+-....
T Consensus 217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 23333332211 011346666777777777778877777776654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.3 Score=40.36 Aligned_cols=91 Identities=19% Similarity=0.132 Sum_probs=55.7
Q ss_pred HHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHH
Q 004814 133 ILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN 212 (729)
Q Consensus 133 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 212 (729)
+++..|+++.|++.|.+++..-|. ...+|+.-+++|--+|+.++|++-+++.++..-...-..|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~---------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacq 116 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE---------------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQ 116 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc---------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHH
Confidence 467777888888888777776554 35567777777777777777777777777632111222222
Q ss_pred H---HHHHHHHCCChhHHHHHHHHHHhCC
Q 004814 213 R---IIKVLRDNGFSVKAREVYRMMGEFG 238 (729)
Q Consensus 213 ~---ll~~l~~~g~~~~A~~~~~~~~~~~ 238 (729)
. -...|...|+-+.|..=|+...+.|
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 2 2234555566666666666555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.7 Score=36.28 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIE 695 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 695 (729)
+.......++.+.+.|+-|+-.+++.++.+.+ .+++.....+..+|.+.|+..+|.++++++-++|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44455667778888999999888888887644 788888889999999999999999999999888764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.34 Score=40.98 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 523 LITYNVLVHGLCKLGSLEEANELLRKMVG---------------DGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK 587 (729)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (729)
..++..++.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34555566666666666655555544321 122344445555555555555555555555544433
Q ss_pred -CCCCChhhHHHHHH
Q 004814 588 -GLSPTLVTYTVLIH 601 (729)
Q Consensus 588 -~~~~~~~~~~~l~~ 601 (729)
+++-+..+|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 33334444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.067 Score=35.54 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRI 214 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (729)
++..++..|.+.|++++|.++|+++++..+. |...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 5666777888888888888888888877654 55544443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.29 Score=41.37 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHH-hhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVL-IGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
|..+++.++.++++.|+.+....++++....+.++....- ....-.-.++.+++..++.+|+.+|++..|+++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs 79 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFS 79 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5678999999999999999999999888776654210000 00000111234444444444444445555544444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.81 E-value=3.3 Score=38.70 Aligned_cols=205 Identities=14% Similarity=0.066 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 455 TYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLC 534 (729)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~ 534 (729)
.|..-..+|....++++|...+.+..+- ...+...|. ..+.++.|.-+.+++.+. +.-...|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444445555566666666655555431 111111111 112233444444444332 122334444455566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCChhhHHHHHHHHHHcCCH
Q 004814 535 KLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK---G--LSPTLVTYTVLIHAHAARGRL 609 (729)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~ 609 (729)
.+|.++.|-..+++.-+. ....++++|++++++.... + ...-...+......+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666655555544321 1223344444444433321 0 000112233334445555555
Q ss_pred HHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHH
Q 004814 610 ELAFMYFSEMQVK----GIRPNV-ITYNALINGLCRLRRIDQAYGLFIDMEEEG---ILPNKYTYTILINENCNAGNWQE 681 (729)
Q Consensus 610 ~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~l~~~~~~~g~~~~ 681 (729)
++|-..+.+-... .-.++. ..|-..+-.|....++..|.+.+++--+.+ -+.+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 5555444332210 011111 123444444555567777777776644321 122344555566554 4566666
Q ss_pred HHHHH
Q 004814 682 ALRLY 686 (729)
Q Consensus 682 A~~~~ 686 (729)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 55443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.2 Score=43.37 Aligned_cols=156 Identities=12% Similarity=0.047 Sum_probs=108.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCC
Q 004814 498 ELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYT----SIIHASLEMGD 573 (729)
Q Consensus 498 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~ 573 (729)
....|+..+|...++++++. +|.|..++.-.-++|.-.|+.+.-...+++++.. ..+|...|. .+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34577888888888888775 6888888888888888888888888888887754 234443332 23344567888
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 574 LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK---GIRPNVITYNALINGLCRLRRIDQAYGL 650 (729)
Q Consensus 574 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 650 (729)
+++|.+.-++..+.+ +-|.-.-.++...+...|+.+++.++..+-... +...-...|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 899988888888775 556666777777788888899988887765442 1111122344445556677888888888
Q ss_pred HHHHHH
Q 004814 651 FIDMEE 656 (729)
Q Consensus 651 ~~~m~~ 656 (729)
|+.-+-
T Consensus 270 yD~ei~ 275 (491)
T KOG2610|consen 270 YDREIW 275 (491)
T ss_pred HHHHHH
Confidence 876543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.74 Score=48.51 Aligned_cols=129 Identities=18% Similarity=0.119 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 281 YNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK 360 (729)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 360 (729)
.+.++..+.+.|..+.|.++..+-. .-.....+.|+++.|.++.++. .+...|..|.+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4555555555555555555432211 1223344555555555543221 245556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 004814 361 WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQL 440 (729)
Q Consensus 361 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 440 (729)
+|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHH
Confidence 6666666655554432 4445555555666555555554444443 123333344444555555544
Q ss_pred HH
Q 004814 441 KE 442 (729)
Q Consensus 441 ~~ 442 (729)
+.
T Consensus 425 L~ 426 (443)
T PF04053_consen 425 LI 426 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.2 Score=37.02 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=40.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh
Q 004814 129 TILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDV 208 (729)
Q Consensus 129 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 208 (729)
.++..+...+....+..+++.++..++ .++.+.+.++..|++.+ .++.++.+.. . .+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~---------------~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~ 69 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS---------------ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNH 69 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc---------------cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---ccc
Confidence 445555555555555555555554322 13456666666666543 2333333331 1 122
Q ss_pred HhHHHHHHHHHHCCChhHHHHHHHHH
Q 004814 209 KNCNRIIKVLRDNGFSVKAREVYRMM 234 (729)
Q Consensus 209 ~~~~~ll~~l~~~g~~~~A~~~~~~~ 234 (729)
.....++..|.+.+.++++..++.++
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 22334555555555555555555544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.5 Score=45.00 Aligned_cols=88 Identities=16% Similarity=-0.001 Sum_probs=50.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCC
Q 004814 603 HAARGRLELAFMYFSEMQVKGIR--PNVITYNALINGLCRLRRIDQAYGLFIDMEEEG--ILPNKYTYTILINENCNAGN 678 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~ 678 (729)
+.+.|++.+|..-|...++.... -....+-.|+.++...|++++|...|..+.+.- -+--+..+..|..+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 34455566666666666665211 123345566666667777777776666666531 01123455666666666777
Q ss_pred HHHHHHHHHHHH
Q 004814 679 WQEALRLYKEML 690 (729)
Q Consensus 679 ~~~A~~~~~~m~ 690 (729)
.++|...|++.+
T Consensus 231 ~d~A~atl~qv~ 242 (262)
T COG1729 231 TDEACATLQQVI 242 (262)
T ss_pred HHHHHHHHHHHH
Confidence 777777777666
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=4.1 Score=38.49 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=48.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 004814 568 SLEMGDLRRGRDLFNNMLRKGLSP-TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRID 645 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 645 (729)
+...++.+.|...+....... +. ....+..+...+...++++.|...+...... .|+ ...+..+...+...+..+
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHH
Confidence 445556666666666555542 22 3455555566666666666666666666654 222 333344444444555667
Q ss_pred HHHHHHHHHHHc
Q 004814 646 QAYGLFIDMEEE 657 (729)
Q Consensus 646 ~A~~~~~~m~~~ 657 (729)
++...+.+....
T Consensus 254 ~~~~~~~~~~~~ 265 (291)
T COG0457 254 EALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHh
Confidence 777666666653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.61 E-value=5.2 Score=39.59 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 004814 524 ITYNVLVHGLCKLGSL---EEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLI 600 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 600 (729)
.++..++.+|...+.. ++|..+++.+...... .+.++..-+..+.+.++.+++.+.+.+|+..- .-....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 3556667777766653 4456666666554322 24445455566666788888888888887752 21233444444
Q ss_pred HHHH--HcCCHHHHHHHHHHHHHCCCCCCHH-HHH----HHHHHHHhcC------CHHHHHHHHHHHHH-cCCCCCHHHH
Q 004814 601 HAHA--ARGRLELAFMYFSEMQVKGIRPNVI-TYN----ALINGLCRLR------RIDQAYGLFIDMEE-EGILPNKYTY 666 (729)
Q Consensus 601 ~~~~--~~g~~~~A~~~~~~~~~~g~~p~~~-~~~----~l~~~~~~~g------~~~~A~~~~~~m~~-~g~~p~~~~~ 666 (729)
..+- .......|...+..+....+.|... ... ..+......+ +++....+++...+ .+.+.+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 4432 1233456666666666554454443 111 1111122221 14444455553333 2223333332
Q ss_pred ---HHH----HHHHHhcCCHHHHHHHHHHHH
Q 004814 667 ---TIL----INENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 667 ---~~l----~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.++ +..+.++++|++|.+.|+-.+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 233 245678999999999998665
|
It is also involved in sporulation []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.54 E-value=7.8 Score=41.33 Aligned_cols=396 Identities=13% Similarity=0.087 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHHCCCCCChHh-HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHH
Q 004814 189 VEQCLLVFNKMLRNGLLPDVKN-CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC-KEGEMQEALELL 266 (729)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~ 266 (729)
++.+..++..++.. .|-..- |-..+..=.+.|..+.+.++|++.+. |++-.+..|......++ ..|+.+...+.|
T Consensus 61 ~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 61 VDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 35556666666643 244442 44455555677888888888888876 45666667766666555 356777777888
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHH---hC------CCHHHHHHH
Q 004814 267 WEMQGR-GCS-PNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS---EK------GLLVEALNL 335 (729)
Q Consensus 267 ~~m~~~-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~---~~------g~~~~A~~~ 335 (729)
+..... |.. -....|...|..-..++++.....++++.++.- ...++..-.-|. +. -..+++.++
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 877654 211 134467777777777888888888888887642 112222222111 11 112222222
Q ss_pred HHHHHHC---C-CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004814 336 EEEMVTR---G-VAPTLATYNILIYGLCK-WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELR 410 (729)
Q Consensus 336 ~~~m~~~---g-~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 410 (729)
-.....+ + ..+.......-+..-.. .+..+++...+.+... ..-..+...-...+....+++-.
T Consensus 214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhc
Confidence 2111110 0 00011111111111000 0111122211111111 00111222222333333343333
Q ss_pred hCC---C----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 411 SRN---L----VPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKG 483 (729)
Q Consensus 411 ~~~---~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 483 (729)
... + .++..+|..-+.--.+.|+.+.+.-++++..-- +..-...|-..+......|+.+-|..++....+..
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 221 1 224567777777778889999988888887642 22334556566666666688888888887776654
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHH
Q 004814 484 LQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEAN---ELLRKMVGDGFIPDHIT 560 (729)
Q Consensus 484 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~ 560 (729)
.+-.+.+...-.......|+++.|..+++.+...- +.-...-..-+....+.|+.+.+. +++....... . +...
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~-~-~~~i 438 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK-E-NNGI 438 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc-c-Ccch
Confidence 43333332222233446779999999999988763 333334334455566778887777 4443333221 1 2222
Q ss_pred HHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 004814 561 YTSIIHA-----SLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG 607 (729)
Q Consensus 561 ~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 607 (729)
...+.-- +.-.++.+.|..++.++... .+++...|..++......+
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2222211 34467899999999999876 4677788888877666554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.095 Score=34.79 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
++..+..+|.+.|++++|++.|++++ ...|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l--~~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL--ALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCCH
Confidence 45555666666666666666666666 4455443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.34 E-value=10 Score=41.80 Aligned_cols=272 Identities=15% Similarity=0.051 Sum_probs=151.3
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHh
Q 004814 398 NIGEAFLLFDELRSRNLVPTVVTYNTLIDG-----LCRYGDLEVAQQLKENMIN-------QGILPDVITYTIMVNGSCK 465 (729)
Q Consensus 398 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 465 (729)
+..+|.+.++...+.| +......+..+ +....+.+.|..++..+.+ .| .......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4678889998888877 33333333333 3455689999999998877 44 33456667777776
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----h
Q 004814 466 MG-----NLSMAREFFNEMLRKGLQPDRFAYTTQIAGELK-LGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLC----K 535 (729)
Q Consensus 466 ~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~----~ 535 (729)
.. +.+.|..++.+..+.|.. +.......+..... ..+...|.++|....+.|. ...+-.+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCc
Confidence 43 567788888888887643 43333222221112 3467788888888888773 333333333332 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHH---HH----cC
Q 004814 536 LGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLI-HAH---AA----RG 607 (729)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~g 607 (729)
..+...|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+...|.+ ...+-...+ ... .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccccc
Confidence 236778888888888877 3332222223333333 6777777666666665532 222111111 111 11 12
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCH
Q 004814 608 RLELAFMYFSEMQVKGIRPNVITYNALINGLCRL----RRIDQAYGLFIDMEEEGILPNKYTYTILINENCN----AGNW 679 (729)
Q Consensus 608 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~ 679 (729)
+.+.+...+.+....| +......+.+.|... .+.+.|...+......+ ......+...+.. .. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 4556666666666554 555556666655443 24666777777666654 2222223332221 22 5
Q ss_pred HHHHHHHHHHH
Q 004814 680 QEALRLYKEML 690 (729)
Q Consensus 680 ~~A~~~~~~m~ 690 (729)
..|.+++++..
T Consensus 526 ~~a~~~~~~~~ 536 (552)
T KOG1550|consen 526 HLAKRYYDQAS 536 (552)
T ss_pred HHHHHHHHHHH
Confidence 66666666665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.34 E-value=6 Score=39.16 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=59.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHH-------HHHHHHHHCC-ChhHHHHHHHHHHhC----C----CCCCh----
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCN-------RIIKVLRDNG-FSVKAREVYRMMGEF----G----IKPSI---- 243 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~ll~~l~~~g-~~~~A~~~~~~~~~~----~----~~~~~---- 243 (729)
.++|+++.|...+.++.......++.... .+...+.+.+ ++++|..++++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788999999999887643122322222 2333334555 777776666655432 0 11111
Q ss_pred -hhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004814 244 -VTYNTMLDSFCKEGEMQ---EALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKL 307 (729)
Q Consensus 244 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 307 (729)
.+...++.+|...+..+ +|..+++.+... .+-....+..-+..+.+.++.+++.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 13344455555444433 334444444332 1111233333344444455556666666665543
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.7 Score=36.53 Aligned_cols=84 Identities=10% Similarity=0.073 Sum_probs=42.3
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 004814 213 RIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNG 292 (729)
Q Consensus 213 ~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 292 (729)
.++..+.+.+.......+++.+.+.+ ..+...++.++..|++.+ .++..+.+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 45555555556666666666665554 345556666666666542 2333333331 012222333455555555
Q ss_pred CHHHHHHHHHHH
Q 004814 293 ELEQARGLIRDM 304 (729)
Q Consensus 293 ~~~~A~~~~~~m 304 (729)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.99 E-value=15 Score=42.54 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=19.0
Q ss_pred CCHhHHHHHHHHHHHcC--CHHHHHHHHHHHhh
Q 004814 381 PDIISYNTLLYGYCRSG--NIGEAFLLFDELRS 411 (729)
Q Consensus 381 ~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~ 411 (729)
|+ .-...+|..|.+.+ .+++|+....+...
T Consensus 789 ~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 789 PD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 44 34455667777776 66777776666654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.80 E-value=6.3 Score=37.45 Aligned_cols=53 Identities=17% Similarity=0.018 Sum_probs=25.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPN---VITYNALINGLCRLRRIDQAYGLFID 653 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 653 (729)
..-|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|.+.|..++|.+.-+-
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 34455555555555555555554 1111 22233444555556655555554433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.24 E-value=12 Score=39.09 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=26.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRKGLS-PTLVTYTVLIHAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (729)
+..++-+.|+.++|.+.++++.+..-. .+..+...|+.++...+++.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444455555555555555443201 11224444555555555555555555554
|
The molecular function of this protein is uncertain. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.11 E-value=3.3 Score=37.43 Aligned_cols=92 Identities=21% Similarity=0.180 Sum_probs=46.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPN-----VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAG 677 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 677 (729)
+.+.|++++|..-|.++++. +++. .+.|..-..++.+.+.++.|+.-..+.++.+ +.......--..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 44555555555555555553 1111 2233344445556666666666666655543 111122223344555666
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 004814 678 NWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 678 ~~~~A~~~~~~m~~~~~~pd~ 698 (729)
++++|+.-|++++ ...|..
T Consensus 183 k~eealeDyKki~--E~dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKIL--ESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHH--HhCcch
Confidence 6666666666666 444543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.64 Score=44.09 Aligned_cols=69 Identities=22% Similarity=0.366 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 225 VKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG----------------EMQEALELLWEMQGRGCSPNGVTYNVLITGF 288 (729)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 288 (729)
+---..++.|.+.|+..|..+|+.|++.+-|.. +-+-+++++++|...|+.||..+-..|++++
T Consensus 89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~F 168 (406)
T KOG3941|consen 89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAF 168 (406)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence 333344455555555556666665555543311 2233566666666666666666666666666
Q ss_pred HhCCC
Q 004814 289 SRNGE 293 (729)
Q Consensus 289 ~~~g~ 293 (729)
.+.+-
T Consensus 169 Gr~~~ 173 (406)
T KOG3941|consen 169 GRWNF 173 (406)
T ss_pred ccccc
Confidence 65553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.2 Score=31.41 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+|..|..+|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999999966
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.96 E-value=6.1 Score=34.87 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=68.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HH--HHHHHHHHhcCCH
Q 004814 569 LEMGDLRRGRDLFNNMLRKGLSPTLV-TYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI-TY--NALINGLCRLRRI 644 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~--~~l~~~~~~~g~~ 644 (729)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|... -. ..-...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44555666666666665554321111 11112223445666666666666665543333222 01 1112235566777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 645 DQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~ 700 (729)
++.....+.+...+-+--...-..|.-+-.+.|++.+|.+.|+.+......|....
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnir 204 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIR 204 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHH
Confidence 77666666555443222233345666666777777777777777765445555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.73 E-value=18 Score=39.71 Aligned_cols=109 Identities=15% Similarity=0.203 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 489 FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHAS 568 (729)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (729)
.+.+..+.-+...|+..+|.++-.+.. -||-..|..-+.++...+++++-+++-+... .+.-|.-...+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344444445555666666665555442 3566666666666666666665544443322 234455566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 004814 569 LEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYF 616 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 616 (729)
.+.|+.++|.+.+.+.... . -...+|.+.|++.+|.++-
T Consensus 755 ~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 6777777776666443211 1 3445666666666666543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=11 Score=37.20 Aligned_cols=128 Identities=16% Similarity=0.079 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 557 DHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG-RLELAFMYFSEMQVKGIRPNVITYNALI 635 (729)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 635 (729)
+..+-...+.++.+.++ ++|...+-.+.+. +|..+-...+.++...+ +...+...+..+.. .+|...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444455555555554 3455555555542 33344444444444432 23455555555553 24555555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~ 700 (729)
.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.- +|+..+.++. +-.||...
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~--~~~~d~~v 269 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL--YKFDDNEI 269 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH--hhCCChhH
Confidence 66666665 45555555555432 1 123455666666663 5666666666 33344443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.32 E-value=21 Score=39.40 Aligned_cols=273 Identities=15% Similarity=0.033 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHH----H-HHHcCCHHHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHHh
Q 004814 363 RVSDARHRFFEMLRKNVIPDIISYNTLLY----G-YCRSGNIGEAFLLFDELRS-------RNLVPTVVTYNTLIDGLCR 430 (729)
Q Consensus 363 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~----~-~~~~g~~~~A~~l~~~m~~-------~~~~~~~~~~~~ll~~~~~ 430 (729)
+..+|.+.++.....|- ...-..++. + +....+.+.|+..|+.+.+ .+ +......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 45788898988888763 333333322 2 4456799999999999877 55 44466677777777
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---
Q 004814 431 YG-----DLEVAQQLKENMINQGILPDVITYTIMVNGSCKM---GNLSMAREFFNEMLRKGLQPDRFAYTTQIAGEL--- 499 (729)
Q Consensus 431 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~--- 499 (729)
.. +.+.|..++.+.-+.| .|+.... +...+... .+...|.++|....+.|.. ..+..+..+|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGL 374 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCC
Confidence 43 6788999999999887 3444433 33333332 4678999999999998743 23333333332
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH---Hh----
Q 004814 500 -KLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSII-HAS---LE---- 570 (729)
Q Consensus 500 -~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~---~~---- 570 (729)
-..+...|...+....+.| .+....-...+..+.. ++++.+...+..+.+.|.. ...+-...+ ... ..
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~ 451 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGV 451 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccc
Confidence 4568899999999999988 3332222233344444 7888888888877777644 222222222 111 11
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcC
Q 004814 571 MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR----GRLELAFMYFSEMQVKGIRPNVITYNALINGLC----RLR 642 (729)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g 642 (729)
..+...+...+......| +......+.+.|... .+++.|...+....+.+ ....-.+...+- -..
T Consensus 452 ~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~ 524 (552)
T KOG1550|consen 452 ISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV 524 (552)
T ss_pred ccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch
Confidence 225667777777777665 666677777776554 35888888888888764 333333333221 223
Q ss_pred CHHHHHHHHHHHHHcC
Q 004814 643 RIDQAYGLFIDMEEEG 658 (729)
Q Consensus 643 ~~~~A~~~~~~m~~~g 658 (729)
+..|.++++...+.+
T Consensus 525 -~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 525 -LHLAKRYYDQASEED 539 (552)
T ss_pred -hHHHHHHHHHHHhcC
Confidence 677888888777643
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.28 Score=30.21 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+|..++.++...|++++|+..|++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 45666666666777777777766666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.19 Score=31.04 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHH
Q 004814 147 VETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCL 193 (729)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 193 (729)
++++++.+|+ +...|..|+..|...|++++|+
T Consensus 2 y~kAie~~P~---------------n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN---------------NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC---------------CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677777777 6888999999999999999886
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.98 E-value=1.3 Score=42.04 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=15.2
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC
Q 004814 367 ARHRFFEMLRKNVIPDIISYNTLLYGYCRSG 397 (729)
Q Consensus 367 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 397 (729)
+++++++|...|+.||..+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4444555555555555555555555544444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.88 E-value=6.3 Score=33.87 Aligned_cols=82 Identities=10% Similarity=-0.037 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP--DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTML 250 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 250 (729)
+..+..-+..-.+.|++++|.+.|+.+...-+.. ...+-..++.++.+.+++++|...+++.++.....--.-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3344444555567788888888888887653321 23344567777888888888888888887764222223454445
Q ss_pred HHHH
Q 004814 251 DSFC 254 (729)
Q Consensus 251 ~~~~ 254 (729)
.+++
T Consensus 90 ~gL~ 93 (142)
T PF13512_consen 90 RGLS 93 (142)
T ss_pred HHHH
Confidence 5544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.67 E-value=2.4 Score=37.18 Aligned_cols=117 Identities=21% Similarity=0.074 Sum_probs=69.0
Q ss_pred hhHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004814 594 VTYTVLIHAH---AARGRLELAFMYFSEMQVKGIRPNVITY-NALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTIL 669 (729)
Q Consensus 594 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 669 (729)
.+.+.|+... .+.++.+++..++..+.-. .|..... ..-+..+...|++++|+.+|+++.+.+ |....-..|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 3455555543 4678999999999999874 5554332 333456788999999999999987753 444444445
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhcHH
Q 004814 670 INENCN-AGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHAV 718 (729)
Q Consensus 670 ~~~~~~-~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~a~ 718 (729)
+..|.. .|+. +=..+-+++++.+-.|+.. .++-..+.+.+...|.
T Consensus 84 lA~CL~~~~D~-~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 84 LALCLYALGDP-SWRRYADEVLESGADPDAR---ALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHcCCh-HHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence 444444 4443 2344455566444444433 2323444455444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.9 Score=41.92 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMG 235 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~ 235 (729)
++..++..+...|+++.+...++++....+. |...|..++.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4445555555555555555555555555443 55555555555555555555555555544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.63 E-value=27 Score=39.19 Aligned_cols=184 Identities=13% Similarity=0.140 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHH-CCCCCC--hHhHHHHHHHHH-HCCChhHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHhcCCHH
Q 004814 190 EQCLLVFNKMLR-NGLLPD--VKNCNRIIKVLR-DNGFSVKAREVYRMMGEFGIKPSIV-----TYNTMLDSFCKEGEMQ 260 (729)
Q Consensus 190 ~~A~~~~~~~~~-~~~~~~--~~~~~~ll~~l~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~ 260 (729)
..|+..++.+.+ ..+.|. ..++..++..|. ...++++|...+.+.....-.++.. ....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 355566666663 333332 333445566554 5667777777777654432122211 1234455555555444
Q ss_pred HHHHHHHHHHhCC----CCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHhCC---CccChhhHHHHHHHHH--hCCCHH
Q 004814 261 EALELLWEMQGRG----CSPNGVTYNVL-ITGFSRNGELEQARGLIRDMLKLG---LKVSAHSYNPIICGYS--EKGLLV 330 (729)
Q Consensus 261 ~A~~~~~~m~~~~----~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~g~~~ 330 (729)
|...+++..+.- ..+-...+..+ +..+...++...|.+.++.+.... ..|...++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 766666655431 11112222222 222223367777777776665432 2233334444444332 345556
Q ss_pred HHHHHHHHHHHCC--C-------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 004814 331 EALNLEEEMVTRG--V-------APTLATYNILIYGLC--KWGRVSDARHRFFEM 374 (729)
Q Consensus 331 ~A~~~~~~m~~~g--~-------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~ 374 (729)
++.+..+++.... + .|-..+|..+++.++ ..|+++.+.+.+.++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665553311 1 223444555544433 445555555554443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.77 Score=44.72 Aligned_cols=53 Identities=9% Similarity=-0.053 Sum_probs=23.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004814 567 ASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (729)
-|.++|.+++|..+|...+... +.|.+++..-..+|.+..++..|..=...++
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444444445544444443331 2244444444444444444444444444433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.25 Score=30.55 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=18.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 651 FIDMEEEGILPNKYTYTILINENCNAGNWQEAL 683 (729)
Q Consensus 651 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 683 (729)
|++.++.. |-|...|..+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445543 445556666666666677666664
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.37 E-value=2.8 Score=38.10 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
...+..++..|.+.|+.++|++.|.++.+....+. ...+..++.+....+++..+.....+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677888899999999999999999888654443 23456677777788888887777766644
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.29 E-value=35 Score=39.85 Aligned_cols=186 Identities=15% Similarity=0.065 Sum_probs=90.5
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 394 CRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAR 473 (729)
Q Consensus 394 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (729)
..+.+..+=+-+++++++. +++..-| .|+. ..++++.|+..+.++- ...|.-.++.--+.|-+++|+
T Consensus 862 ~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~--~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELKKM--ETLLRKF--KIDD--YLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEAL 928 (1265)
T ss_pred HhccChHHHHHHHHHHhhc--hhhhhhe--eHHH--HHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhh
Confidence 3445555666666655532 1111111 1121 2345566655554442 122333344444566666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 474 EFFNEMLRKGLQPDRFAYTTQ----IAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKM 549 (729)
Q Consensus 474 ~~~~~~~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 549 (729)
.++ .|+...+... ..-+...+.+++|.-.|+..-+. .-.+.+|-.+|++.+|+.+..++
T Consensus 929 ~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 929 ALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred hee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhh
Confidence 665 2344333333 33334455555555555443221 12345566667777777666655
Q ss_pred HhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004814 550 VGDGFIPDHI--TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 550 ~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (729)
... .|.. +-..|..-+...+++-+|-++..+.... | .-.+..|++...+++|+++-....
T Consensus 992 ~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 992 SEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred cCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 432 1221 2245555666677777777776665542 1 122344555566666666554443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.24 E-value=29 Score=38.90 Aligned_cols=169 Identities=10% Similarity=0.058 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHCCCCCChH----hHH-HHHHHHHHCCChhHHHHHHHHHHhC----CCCC
Q 004814 172 SIKILDLLLLIYT-KKSMVEQCLLVFNKMLRNGLLPDVK----NCN-RIIKVLRDNGFSVKAREVYRMMGEF----GIKP 241 (729)
Q Consensus 172 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~----~~~-~ll~~l~~~g~~~~A~~~~~~~~~~----~~~~ 241 (729)
...+...++..|. ...++++|...+++.....-.++.. .+. .++..+.+.+... |....++.++. +..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4566777888877 6678999999999886533222221 122 3456666666555 99998887653 1122
Q ss_pred ChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCC------
Q 004814 242 SIVTYNTM-LDSFCKEGEMQEALELLWEMQGRG---CSPNGVTYNVLITGFS--RNGELEQARGLIRDMLKLGL------ 309 (729)
Q Consensus 242 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~------ 309 (729)
-...|..+ +..+...+++..|.+.++.+.... ..|-...+-.++.+.. +.+..+++.+.++.+.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 33344444 333334479999999998886542 2344445555554443 45667778777777743211
Q ss_pred ---ccChhhHHHHHHHH--HhCCCHHHHHHHHHHHHH
Q 004814 310 ---KVSAHSYNPIICGY--SEKGLLVEALNLEEEMVT 341 (729)
Q Consensus 310 ---~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~ 341 (729)
.|...+|..++..+ ...|+++.+.+.++++.+
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23445666666654 467887777776666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.14 E-value=17 Score=36.11 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q 004814 331 EALNLEEEMVTRGVAPTLATYNI 353 (729)
Q Consensus 331 ~A~~~~~~m~~~g~~p~~~~~~~ 353 (729)
+.+.+++.|.+.|+.-+..+|-+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 34455566666666555544443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.10 E-value=10 Score=33.36 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=52.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHH-HHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN-RIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
++..-.+.++.+++..+++.+.-.. |...... .-...+..+|++.+|+.+|+++.+.+ |....-..|+..|....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence 3344457778888888888888754 3333322 23445678888999999998887653 33333333443333332
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 004814 258 EMQEALELLWEMQGRGCSPN 277 (729)
Q Consensus 258 ~~~~A~~~~~~m~~~~~~p~ 277 (729)
+-..=...-+++.+.+..|+
T Consensus 92 ~D~~Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGADPD 111 (160)
T ss_pred CChHHHHHHHHHHhcCCChH
Confidence 22222233344555443333
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.05 E-value=12 Score=34.00 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=62.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPNVITY-----NALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENC 674 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 674 (729)
...+...|++++|...++..... |....+ -.|.......|.+|+|...++...+.++. ......-.+++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 44567788899998888887754 222222 34556677888999999888877654321 223345567888
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 004814 675 NAGNWQEALRLYKEMLDRE 693 (729)
Q Consensus 675 ~~g~~~~A~~~~~~m~~~~ 693 (729)
..|+-++|+.-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8999999999999998665
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.41 Score=29.31 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.|..+..++.+.|++++|++.+++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45556666666666666666666666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.83 E-value=2.7 Score=40.86 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=23.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (729)
++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3333444444444444444444432 334444444444444444444444444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.58 Score=28.72 Aligned_cols=32 Identities=6% Similarity=0.022 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccch
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMH 156 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 156 (729)
.+|..++.++...|++++|...++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57889999999999999999999999998875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.75 E-value=11 Score=33.30 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=23.6
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVK-NCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
.+.+..++|+..|..+.+.|...-+. ..........+.|+...|...|+++-.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 44555555555555555544321111 111223334445555555555555543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.74 E-value=33 Score=38.70 Aligned_cols=318 Identities=14% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004814 334 NLEEEMVTRGVAPT-LATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSR 412 (729)
Q Consensus 334 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 412 (729)
+.+..-.+.++.++ ......-...+...|...+| |.-.+..|+++.|-.++++....
T Consensus 332 eFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eA----------------------I~hAlaA~d~~~aa~lle~~~~~ 389 (894)
T COG2909 332 EFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEA----------------------IDHALAAGDPEMAADLLEQLEWQ 389 (894)
T ss_pred HHHHhhhccccCCchhHHHHHHHHHHHhCCChHHH----------------------HHHHHhCCCHHHHHHHHHhhhhh
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 004814 413 NLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYT 492 (729)
Q Consensus 413 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 492 (729)
+...+++.....+.+.+-..-...++...-.-+-......++++|..++.++...-..|+...-.
T Consensus 390 ---------------L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~ 454 (894)
T COG2909 390 ---------------LFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQG 454 (894)
T ss_pred ---------------hhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchh
Q ss_pred HHHHHHH--------hcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004814 493 TQIAGEL--------KLGDTSEAYRLQEEMLAK----GFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHIT 560 (729)
Q Consensus 493 ~li~~~~--------~~g~~~~A~~l~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 560 (729)
.+...+. ..|++++|.++.+..... -..+....+..+..+..-.|++++|..+..+..+..-.-+...
T Consensus 455 ~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~ 534 (894)
T COG2909 455 DLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH 534 (894)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH
Q ss_pred HHHHHHH-----HHhcC--CHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCC
Q 004814 561 YTSIIHA-----SLEMG--DLRRGRDLFNNMLRKGLSPTLV------TYTVLIHAHAA-RGRLELAFMYFSEMQVKGIRP 626 (729)
Q Consensus 561 ~~~l~~~-----~~~~g--~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p 626 (729)
+...... +...| ...+....+........+.... ++..+..++.+ .+...++..-+.--......|
T Consensus 535 l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~ 614 (894)
T COG2909 535 LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQP 614 (894)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccch
Q ss_pred CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 004814 627 NVITYN--ALINGLCRLRRIDQAYGLFIDMEE----EGILPNKYTYTILINENCN--AGNWQEALRLYKE 688 (729)
Q Consensus 627 ~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 688 (729)
-...+. .|+......|+.++|...+.++.. .+..++..+-...+..... +|+.++|.....+
T Consensus 615 ~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 615 LLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.64 E-value=19 Score=35.79 Aligned_cols=130 Identities=14% Similarity=0.206 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHHcCC--
Q 004814 540 EEANELLRKMVGDGFIPDHITYTSIIHASLE--MG----DLRRGRDLFNNMLRKGL---SPTLVTYTVLIHAHAARGR-- 608 (729)
Q Consensus 540 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~-- 608 (729)
++...+++.+.+.|+..+..+|-+....... .. ...+|.++++.|.+... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445556666666665555444332222211 11 24466677777766521 1233344444332 2222
Q ss_pred --HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 609 --LELAFMYFSEMQVKGIRPNVI--TYNALINGLCRLRR--IDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 609 --~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
.+.+..+|+.+.+.|+..... ....++..+..... ...+.++++.+.+.|+++....|..++-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 345566666666666554332 22222222211111 3456677777777777766666655543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.35 E-value=34 Score=38.22 Aligned_cols=28 Identities=4% Similarity=0.179 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 004814 454 ITYTIMVNGSCK---MGNLSMAREFFNEMLR 481 (729)
Q Consensus 454 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 481 (729)
.-+..|+..|.+ ..+..+|.+++--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345556666654 3456666666655544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.16 E-value=3.8 Score=37.22 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNG--VTYNVLITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (729)
.+..+...|++.|+.++|++.|.++.+....+.. ..+..+|+...-.|++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4556666777777777777777776665333322 234555666666666666666665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.71 Score=28.90 Aligned_cols=27 Identities=11% Similarity=0.002 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
+|..|+..|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367788888888888888888888543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.97 E-value=28 Score=36.54 Aligned_cols=92 Identities=11% Similarity=0.179 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHA--ARGRLELAFMYFSEMQVK-GIRPNVITYNALINGL 638 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~ 638 (729)
+.++..+.+.|-.++|..++..+...- +|+...|..++..-. ..-+..-+.++++.|... | .|+..|-..+..-
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 344555556666666666666665542 445555555554321 111256666666666554 3 4555565555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004814 639 CRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~ 656 (729)
...|+.+.+-.++.++.+
T Consensus 541 ~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccCCCcccccHHHHHHHH
Confidence 566666666666555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.73 E-value=14 Score=32.88 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=8.4
Q ss_pred CCCCCChhhHHHHHHHHHhcCC
Q 004814 237 FGIKPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~ 258 (729)
.+++|+...+..+++.+.+.|+
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCC
Confidence 3333333333333333333333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.84 Score=27.86 Aligned_cols=32 Identities=9% Similarity=0.019 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccch
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMH 156 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 156 (729)
..|..++.++...|++++|...++++++.+|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 56788999999999999999999999988774
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.27 E-value=15 Score=32.65 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhH
Q 004814 193 LLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVK 226 (729)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~ 226 (729)
++.++.+.+.+..|+...+..++..+.+.|++..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444444445555555555555555555554433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.00 E-value=30 Score=35.56 Aligned_cols=54 Identities=13% Similarity=0.300 Sum_probs=34.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 425 IDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 425 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
..+.-+.|+++...+........ .++...+..+... ..++++++...++.+...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 45677888888855555544332 2355555555533 788888888888777653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.38 E-value=19 Score=32.66 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCCHHHHHH
Q 004814 541 EANELLRKMVGDGFIPDHITYTS--IIHASLEMGDLRRGRDLFNNMLRKGLSPTL----VTYTVLIHAHAARGRLELAFM 614 (729)
Q Consensus 541 ~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 614 (729)
+.....+++...........+.+ +...+...+++++|...++..+.. +.|. .+--.|.......|.+|+|+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444555554422212222222 345577788888888888877754 2221 122334556778888899888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004814 615 YFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 615 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 658 (729)
.++...+.+. .......-++.+...|+-++|+.-|++..+.+
T Consensus 148 ~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 148 TLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 8887776532 33344556778888899999999998888864
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=28 Score=34.38 Aligned_cols=201 Identities=13% Similarity=0.048 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCC
Q 004814 452 DVITYTIMVNGSCKMGNL----SMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDT-----SEAYRLQEEMLAKGFPPD 522 (729)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-----~~A~~l~~~~~~~~~~~~ 522 (729)
|...-...+.++.+.|+. +++...+..+... .++.......+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444555555555542 3455555555333 34444444444444433211 223333333322 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004814 523 LITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMG-DLRRGRDLFNNMLRKGLSPTLVTYTVLIH 601 (729)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 601 (729)
..+-...+.++.+.++ .++...+-.+++. +|..+-...+.++.+.+ +...+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5555666777777765 4566666666653 34444444455555442 24456666666664 356667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004814 602 AHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINEN 673 (729)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 673 (729)
++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.++
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 7777777 45666666665542 2 234566777777774 678888777764 34666555555544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.09 E-value=2.9 Score=40.97 Aligned_cols=96 Identities=11% Similarity=-0.036 Sum_probs=62.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
.-.+-|.++|.+++|+..|.+.....+. +.+.+..-..+|.+..++..|..-....+..+ ..-+-+|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999988876543 77777778888888888888877777766543 111223443333333445
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 004814 258 EMQEALELLWEMQGRGCSPN 277 (729)
Q Consensus 258 ~~~~A~~~~~~m~~~~~~p~ 277 (729)
+..+|.+-++...+. .|+
T Consensus 180 ~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred hHHHHHHhHHHHHhh--Ccc
Confidence 555555555555543 444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.01 E-value=4.8 Score=42.71 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 348 LATYNILIYGLCKWGRVSDARHRFFE 373 (729)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (729)
..-|..|.+.....|++..|.+.|..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 33444444444444444444444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.90 E-value=5.9 Score=34.16 Aligned_cols=63 Identities=16% Similarity=-0.018 Sum_probs=42.4
Q ss_pred hhHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004814 594 VTYTVLIHAH---AARGRLELAFMYFSEMQVKGIRPNVI-TYNALINGLCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 594 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 658 (729)
.+.+.|++.. ...++.+++..+++.|.-. .|+.. .-..-+..+...|++++|.++|++..+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3445555443 3578889999999888774 44432 22233456788899999999999888754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.38 E-value=24 Score=32.60 Aligned_cols=81 Identities=15% Similarity=-0.005 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 190 EQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEM 269 (729)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 269 (729)
+-|.--|.+.+...+. -+.++|-+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +---|+++-|.+-|...
T Consensus 82 ~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 82 ALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHH
Confidence 3344444444443322 345577777777888888888888888887652222222232222 23457888887766555
Q ss_pred HhC
Q 004814 270 QGR 272 (729)
Q Consensus 270 ~~~ 272 (729)
-..
T Consensus 160 YQ~ 162 (297)
T COG4785 160 YQD 162 (297)
T ss_pred Hhc
Confidence 443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.27 E-value=5.8 Score=38.57 Aligned_cols=98 Identities=9% Similarity=0.103 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 558 HITYTSIIHASLEMGDLRRGRDLFNNMLRKG---LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNAL 634 (729)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 634 (729)
..+...++..-....+++.+...+-++...- ..++...+ ..+. ++-.-++++++.++..=+..|+-||..+++.+
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchhhHHHH
Confidence 3344444444444556666666665554320 11111111 1111 12223455666666666666666777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 004814 635 INGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 635 ~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
++.+.+.+++.+|.++...|+..
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777776666666666553
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.12 E-value=63 Score=36.18 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=36.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHh---
Q 004814 425 IDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGL-QPDRFAYTTQIAGELK--- 500 (729)
Q Consensus 425 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~--- 500 (729)
...+.-.|+++.|.+.+-+ ..+...+.+.+...+..| |-.......-..+..... .|....+..+|..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455668889998888776 112233444444443332 222211111122222110 1122556777777764
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004814 501 LGDTSEAYRLQEEMLAK 517 (729)
Q Consensus 501 ~g~~~~A~~l~~~~~~~ 517 (729)
..+..+|.+.+--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 45677777776655443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.81 E-value=7.1 Score=34.89 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCC-----------hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004814 187 SMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGF-----------SVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK 255 (729)
Q Consensus 187 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (729)
.++++|+.-|++++...|. ...++..+.++|...+. +++|...|++.... .|+...|+.-+....
T Consensus 49 ~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~- 124 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA- 124 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-
Confidence 3567888888888886644 34566667776655432 33444444444443 466666665555442
Q ss_pred cCCHHHHHHHHHHHHhC
Q 004814 256 EGEMQEALELLWEMQGR 272 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~~ 272 (729)
+|-++..++.+.
T Consensus 125 -----kap~lh~e~~~~ 136 (186)
T PF06552_consen 125 -----KAPELHMEIHKQ 136 (186)
T ss_dssp -----THHHHHHHHHHS
T ss_pred -----hhHHHHHHHHHH
Confidence 245555555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.52 E-value=35 Score=32.62 Aligned_cols=158 Identities=12% Similarity=0.111 Sum_probs=97.5
Q ss_pred cCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCC--CChHhH
Q 004814 137 SGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR---NGLL--PDVKNC 211 (729)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~ 211 (729)
...+++|+..|+++++..++. ..+--+.+..++..+.+.|++++..+.|.+++. ..+. -+..+-
T Consensus 40 e~~p~~Al~sF~kVlelEgEK-----------geWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsI 108 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEK-----------GEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSI 108 (440)
T ss_pred ccCHHHHHHHHHHHHhccccc-----------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 346788999999888876542 123456677888999999999999999888763 1111 234556
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----C------
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEF-----GIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCS----P------ 276 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p------ 276 (729)
|+++.......+.+.-..+|+.-.+. +-..-..|-..|...|...|.+.+-.+++.++...-.. .
T Consensus 109 N~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt 188 (440)
T KOG1464|consen 109 NSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT 188 (440)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc
Confidence 77777666666666665665543221 00111223356777777777777777777776543111 0
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 277 -NGVTYNVLITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 277 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (729)
=...|..=|..|...++-.....++++.+
T Consensus 189 QLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 189 QLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 12345555666666666666666666655
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.19 E-value=4.6 Score=36.08 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 645 DQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
++|...|+++.+ ..|+...|+.-+.
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHH
Confidence 334444444444 2455555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.14 E-value=1.1 Score=27.37 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+|..+...|...|++++|.+.|++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555556666666666666666655
|
... |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.01 E-value=47 Score=33.68 Aligned_cols=60 Identities=13% Similarity=-0.041 Sum_probs=36.7
Q ss_pred HHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 004814 143 AYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVL 218 (729)
Q Consensus 143 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l 218 (729)
-+.+++++++.+|. +..++..++..+.+....++..+.+++++...+. +...|...+...
T Consensus 50 klsilerAL~~np~---------------~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~ 109 (321)
T PF08424_consen 50 KLSILERALKHNPD---------------SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHH
Confidence 34566666666554 4566666666666666777777777777765433 455555555544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.78 E-value=12 Score=39.85 Aligned_cols=131 Identities=17% Similarity=0.078 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 004814 315 SYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYC 394 (729)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (729)
..+.++..+.+.|..++|+++-. |... -.....+.|+++.|.++..+. .+..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~---------D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST---------DPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC---------Chhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 44556666666666666665421 1111 123344567777776655443 34556777777777
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 395 RSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMARE 474 (729)
Q Consensus 395 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (729)
+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.| ..|. ..-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNL-----AFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccch-----HHHHHHHcCCHHHHHH
Confidence 77777777776665433 2344555555666555555544444444 2222 1223445666666666
Q ss_pred HHHH
Q 004814 475 FFNE 478 (729)
Q Consensus 475 ~~~~ 478 (729)
++..
T Consensus 743 lLi~ 746 (794)
T KOG0276|consen 743 LLIS 746 (794)
T ss_pred HHHh
Confidence 6543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.42 E-value=15 Score=33.69 Aligned_cols=73 Identities=15% Similarity=0.011 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 610 ELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEE---GILPNKYTYTILINENCNAGNWQEAL 683 (729)
Q Consensus 610 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~ 683 (729)
++|.+.|-++...+.--++.....|+..|. ..+.++|+.++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 667777777776655556666666665555 45777888887777763 22566777888888888888887775
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.29 E-value=15 Score=33.33 Aligned_cols=95 Identities=13% Similarity=-0.062 Sum_probs=47.5
Q ss_pred HHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhH
Q 004814 132 EILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNC 211 (729)
Q Consensus 132 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 211 (729)
.-+.++|.+.+|..-|..++..-|... .....-+|..-+.++.+.+.++.|+.-..+.++.++. ...+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl 171 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKAL 171 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHH
Confidence 345666777777766666665433210 0011222333344555666666666666666665533 22333
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
..-..+|-+...+++|+.=|..+.+.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 33344455555555555555555543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.09 E-value=46 Score=38.21 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 355677777777777777777777765
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.78 E-value=28 Score=30.20 Aligned_cols=53 Identities=9% Similarity=-0.043 Sum_probs=35.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHH-HHHHHHHHCCChhHHHHHHHHHHhCC
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCN-RIIKVLRDNGFSVKAREVYRMMGEFG 238 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~g~~~~A~~~~~~~~~~~ 238 (729)
...++.+++..+++.+.-..+ +..... .-...+...|++++|+.+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP--~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRP--NLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCC--CccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 347788888888888876543 322222 23345677888888888888887753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.58 E-value=12 Score=38.75 Aligned_cols=128 Identities=18% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 565 IHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRI 644 (729)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 644 (729)
|.--...|++..|-+-+...+... +.++.........+...|+++.+...+...... +.....+..+++....+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 645 DQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
++|..+-.-|....+. ++.............|-++++...|++.. -+.|.
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~--~~~~~ 423 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL--LLNPE 423 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh--ccCCh
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.33 E-value=3 Score=26.77 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 664 YTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 664 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+++.|...|...|++++|..++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 467788888888888888888888877
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.09 E-value=66 Score=33.92 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=52.6
Q ss_pred HHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 004814 192 CLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC-KEGEMQEALELLWEMQ 270 (729)
Q Consensus 192 A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 270 (729)
...+|+++... +.-|+..|...+..+.+.+.+.+...+|.+|.... +.++..|..-..... ..-+++.|..+|.+-.
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 34455555543 23388888888888888888999999999988754 344444443333333 3334888888888877
Q ss_pred hC
Q 004814 271 GR 272 (729)
Q Consensus 271 ~~ 272 (729)
..
T Consensus 168 R~ 169 (568)
T KOG2396|consen 168 RF 169 (568)
T ss_pred hc
Confidence 65
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=83.03 E-value=63 Score=35.88 Aligned_cols=147 Identities=14% Similarity=0.133 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 543 NELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 543 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
...++.++..-+..+.....-++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+.-+.++|+......+-+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l--- 464 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL--- 464 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH---
Confidence 44445555443344555556666677777777777766665543310 1122333333344444444333333333
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 623 GIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEE-GILPNKYTYTILIN--ENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 623 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
+..|+..|... ...+.+.+... .+.+....|..+-+ ...+.|++.+|.+.+-.++..+..|...
T Consensus 465 ------------l~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 465 ------------LEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------HHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 23334333311 12222221111 01111111111111 1244688889988888888777777653
Q ss_pred HHHHHHHhh
Q 004814 700 THSALLLKQ 708 (729)
Q Consensus 700 ~~~~ll~~~ 708 (729)
|..+|.+.
T Consensus 532 -~~~LL~d~ 539 (566)
T PF07575_consen 532 -WPLLLCDA 539 (566)
T ss_dssp ---------
T ss_pred -HHHHHHHH
Confidence 44443443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=82.33 E-value=63 Score=33.12 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=35.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 389 LLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMIN 446 (729)
Q Consensus 389 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 446 (729)
...+.-+.|+++...+........ .++...+..+... ..++.+++....+.+..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356677889998855555544432 2345555554433 78999999888887765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.22 E-value=12 Score=34.18 Aligned_cols=71 Identities=13% Similarity=-0.048 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 576 RGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK---GIRPNVITYNALINGLCRLRRIDQA 647 (729)
Q Consensus 576 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A 647 (729)
+|.+.|-.+...+.-.++.....|...|. ..+.++++.++.++.+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444332233333333333222 34445555555444432 2234455555555555555555554
|
|
| >PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans | Back alignment and domain information |
|---|
Probab=81.85 E-value=21 Score=30.08 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=6.1
Q ss_pred CChHHHHHHHHHh
Q 004814 102 EKPRIALRFFRWV 114 (729)
Q Consensus 102 ~~~~~al~~f~~~ 114 (729)
++|..|..++.+.
T Consensus 3 nNp~IA~~~l~~l 15 (126)
T PF10155_consen 3 NNPNIAIEILVKL 15 (126)
T ss_pred CcHHHHHHHHHHH
Confidence 3444555544444
|
Their function is not known. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.57 E-value=1.7e+02 Score=37.55 Aligned_cols=321 Identities=12% Similarity=0.032 Sum_probs=163.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 004814 248 TMLDSFCKEGEMQEALELLWEM----QGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGY 323 (729)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 323 (729)
.+..+-.+++.+.+|...++.- .+. .-...-|..+...|...+++|....+...-.. .| ....-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHH
Confidence 4555666788999999988883 222 11233455556689999999888877764211 11 233456667
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHHcCCHHHH
Q 004814 324 SEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTL-LYGYCRSGNIGEA 402 (729)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A 402 (729)
...|++..|...|+.+.+.+.+ ...+++-++......|.++...-..+....+.. +....++.+ +.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s-e~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS-EEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhccC-HHHHHHHHHHHHHHhhhcchhhh
Confidence 7889999999999999886533 466777777777777888777765555444321 333444443 3333556666665
Q ss_pred HHHHHHHhhCCCCCCHhhHHHH--HHHHHhcC--CHHHHHHHHHHHHHC--------CCC-CCHHHHHHHHHHHHhcCCH
Q 004814 403 FLLFDELRSRNLVPTVVTYNTL--IDGLCRYG--DLEVAQQLKENMINQ--------GIL-PDVITYTIMVNGSCKMGNL 469 (729)
Q Consensus 403 ~~l~~~m~~~~~~~~~~~~~~l--l~~~~~~g--~~~~A~~~~~~~~~~--------~~~-~~~~~~~~l~~~~~~~g~~ 469 (729)
...+. .. +..+|... .....+.. +.-.-.+..+.+.+. +.. .-...|..++..+.-..--
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 55443 11 22233322 22222221 111111222222211 111 1123344444333221111
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 004814 470 SMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEE-MLAK----GFP-PDLITYNVLVHGLCKLGSLEEAN 543 (729)
Q Consensus 470 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~ 543 (729)
.....+...-.......+...|..-+..-....+..+-+-.+++ +... +.. .-..+|-...+...+.|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 11111110000000011111122222111111112221111111 1111 111 12457777888878899999998
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 544 ELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKG 588 (729)
Q Consensus 544 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 588 (729)
..+-.+.+.+ -+..+--........|+...|+.++++..+..
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8777776654 23445556677788899999999999888653
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.30 E-value=3.9 Score=26.21 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887765
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.26 E-value=98 Score=34.62 Aligned_cols=22 Identities=5% Similarity=-0.052 Sum_probs=12.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004814 459 MVNGSCKMGNLSMAREFFNEML 480 (729)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~ 480 (729)
|+..|...+++..|..++-.+.
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5555666666666666554443
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.19 E-value=95 Score=34.47 Aligned_cols=158 Identities=14% Similarity=0.057 Sum_probs=76.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH-HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHH-hCCCCCC-hhhHHHHHHHHHh
Q 004814 179 LLLIYTKKSMVEQCLLVFNKML-RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMG-EFGIKPS-IVTYNTMLDSFCK 255 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~-~~~~~~~-~~~~~~li~~~~~ 255 (729)
+-.+|...|.+++|++..=+.. ...+.++...+.+++.-+... -.+++.+.+..-. ..++.+- ....+.++..|..
T Consensus 65 ~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~ 143 (929)
T KOG2062|consen 65 ASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKNPEQKSPIDQRLRDIVERMIQKCLD 143 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhh
Confidence 3456777888999987765443 333445555555555444321 1223333333211 1111111 1134445555555
Q ss_pred cCCHHHHHH---------HHHHH-HhCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHh---CCCccChhhHHHHHH
Q 004814 256 EGEMQEALE---------LLWEM-QGRGCSPNGVTYNVLITGFSRNGE-LEQARGLIRDMLK---LGLKVSAHSYNPIIC 321 (729)
Q Consensus 256 ~g~~~~A~~---------~~~~m-~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~---~~~~~~~~~~~~li~ 321 (729)
.+++..|+. ++++. .+....++ ..+.++..+..... .+--.++++.+.+ ....|| |..+..
T Consensus 144 d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~vc~ 218 (929)
T KOG2062|consen 144 DNEYKQAIGIAFETRRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---YFSVCQ 218 (929)
T ss_pred hhHHHHHHhHHhhhhhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---eeeeee
Confidence 555544433 33332 22212222 22223333322222 2333344444443 223444 556777
Q ss_pred HHHhCCCHHHHHHHHHHHHHC
Q 004814 322 GYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~ 342 (729)
+|.-..+.+.+.++++++.+.
T Consensus 219 c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 219 CYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeEEcCCHHHHHHHHHHHHhc
Confidence 888888999999999998874
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=80.44 E-value=77 Score=35.19 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKM 199 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 199 (729)
++..|+ .+..+.-.|++++|.+++...
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 377787 677788889999999888443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.37 E-value=3.9 Score=24.84 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccc
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNM 155 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 155 (729)
.+|..+..++...|++++|...|+++++.+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4688899999999999999999999988765
|
... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.21 E-value=61 Score=31.60 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 598 VLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
.....|..+|.+.+|.++.++.+... +.+...+-.++..+...|+--+|.+-++++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445566666666666666665542 2244455556666666666555555555553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 729 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 2e-06 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 8e-05 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 95.3 bits (235), Expect = 3e-20
Identities = 40/245 (16%), Positives = 74/245 (30%), Gaps = 15/245 (6%)
Query: 480 LRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSL 539
L + LQ + + Q+AG L+ EE LA+ SL
Sbjct: 60 LTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKL-----------SL 108
Query: 540 EEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFN---NMLRKGLSPTLVTY 596
+ + + L L L +K TL Y
Sbjct: 109 DVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY 168
Query: 597 TVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYG-LFIDME 655
++ A +G + ++ G+ P++++Y A + + R + M
Sbjct: 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228
Query: 656 EEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKV 715
+EG+ +L++E A + ++ P S LL KD +V
Sbjct: 229 QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRV 288
Query: 716 HAVEY 720
+
Sbjct: 289 SYPKL 293
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 88.7 bits (218), Expect = 3e-18
Identities = 23/219 (10%), Positives = 60/219 (27%), Gaps = 4/219 (1%)
Query: 300 LIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLC 359
L + ++ K L + ++
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 360 KWGRVSDARH---RFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVP 416
++ A H +K + + YN ++ G+ R G E + ++ L P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 417 TVVTYNTLIDGLCRYG-DLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREF 475
+++Y + + R D ++ E M +G+ + ++++ + L +
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 476 FNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEM 514
P + + +L +
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.0 bits (211), Expect = 2e-17
Identities = 36/287 (12%), Positives = 74/287 (25%), Gaps = 19/287 (6%)
Query: 433 DLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMARE---FFNEMLRKGLQPDRF 489
L+V Q + L +A + +K
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 490 AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEA-NELLRK 548
Y + G + G E + + G PDL++Y + + + L +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 549 MVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGR 608
M +G + ++ L+ + P V + L+ A+
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 609 LELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTI 668
++ + ++ A + + E+ LP+K
Sbjct: 287 RVSYPKLHLPLKTLQCLF------------EKQLHMELASRVCVVSVEKPTLPSKEVKHA 334
Query: 669 LINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALL---LKQLDKD 712
W++AL +E + L L LD+
Sbjct: 335 RKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDER 381
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.2 bits (196), Expect = 1e-15
Identities = 24/189 (12%), Positives = 62/189 (32%), Gaps = 4/189 (2%)
Query: 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREV---YR 232
L LL K ++ + + L + K A + +
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154
Query: 233 MMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNG 292
+ ++ YN ++ + ++G +E + +L+ ++ G +P+ ++Y + R
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 293 ELEQA-RGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATY 351
+ + M + GLK+ A ++ +L ++ P
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274
Query: 352 NILIYGLCK 360
+ L+ +
Sbjct: 275 SKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.2 bits (196), Expect = 1e-15
Identities = 19/174 (10%), Positives = 48/174 (27%), Gaps = 4/174 (2%)
Query: 226 KAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELL---WEMQGRGCSPNGVTYN 282
+ + + ++ A LL + + YN
Sbjct: 110 VEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYN 169
Query: 283 VLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALN-LEEEMVT 341
++ G++R G ++ ++ + GL SY + + + E+M
Sbjct: 170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
Query: 342 RGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCR 395
G+ +L+ + + +P ++ + LL
Sbjct: 230 EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.7 bits (198), Expect = 1e-15
Identities = 100/683 (14%), Positives = 203/683 (29%), Gaps = 197/683 (28%)
Query: 11 LSAHSYHYFYLKKVRFFF--PF-----CFSVHTYP-SISESNNKDSVL---NPESESYYK 59
H Y Y K + F F C V P SI D ++ + S +
Sbjct: 11 TGEHQYQY---KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR- 66
Query: 60 ELIISTVEEKP----WAFC------NNRWVSDHFQAVVSDPELLVRVLNRIREKPRIALR 109
+ T+ K F N +++ + P ++ R+ R++
Sbjct: 67 --LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR------ 118
Query: 110 FFRWVETQP----GVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGG 165
+ + Q V R + + + L+E LR A V+ + G+L G
Sbjct: 119 --LYNDNQVFAKYNVSRLQPYL-KLRQALLE---LRPAKNVL-------IDGVL----GS 161
Query: 166 GLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNK--MLRNGLLPDVKNCNR---IIKVLRD 220
G + V++ + S QC + F + ++KNCN ++++L+
Sbjct: 162 G-KTWVALDVC---------LSYKVQCKMDFKIFWL-------NLKNCNSPETVLEMLQK 204
Query: 221 NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELL--------WEMQGR 272
+ + R IK I + L K + L +L W
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 273 GCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE---KGLL 329
C +L+T +R + + D L + S + + K LL
Sbjct: 265 SCK-------ILLT--TRFKQ-------VTDFLS-AATTTHISLDHHSMTLTPDEVKSLL 307
Query: 330 VEALN-----LEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHR--FFEMLRKNVIPD 382
++ L+ L E++T P + + D ++ + + +
Sbjct: 308 LKYLDCRPQDLPREVLT--TNP-------RRLSII-AESIRDGLATWDNWKHVNCDKLTT 357
Query: 383 II--SYNTL-------LYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRY-- 431
II S N L ++ + +F S + +PT++ L
Sbjct: 358 IIESSLNVLEPAEYRKMF---------DRLSVFPP--SAH-IPTIL--------LSLIWF 397
Query: 432 -GDLEVAQQLKENMINQGIL---PDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD 487
+ + ++ P T +I +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----------------------SIY-- 432
Query: 488 RFAYTTQIAGELKLGDTS-EAYRLQEEMLAKGFPPDLIT---YNVLVHGLCKLGSLEEAN 543
++ E L + + Y + + + P + Y+ + H L + E
Sbjct: 433 -LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 544 ELLRKMVGDGFIPDHITYTSI---IHASLE--MGDLRRGRDLF--NNMLRKGLSPTLVTY 596
+ F+ I + S S+ + L+ + N+ + L ++ +
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 597 TVLIHAHAARGR----LELAFMY 615
I + + L +A M
Sbjct: 552 LPKIEENLICSKYTDLLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-06
Identities = 47/352 (13%), Positives = 98/352 (27%), Gaps = 104/352 (29%)
Query: 442 ENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAY---TTQIAGE 498
+++I D ++ T+ + + M ++F E L+ + Y + I E
Sbjct: 52 DHIIMS---KDAVSGTLRLFWTLLSKQEEMVQKFVEE----VLRIN---YKFLMSPIKTE 101
Query: 499 LKLGDTSEAYRLQEEMLAKGF--PPDLITYNV----------------------LVHGLC 534
+ S R+ E + + YNV L+ G+
Sbjct: 102 QR--QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV- 158
Query: 535 KLGS----LEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLS 590
LGS + A ++ + I + ++ + + L + L + S
Sbjct: 159 -LGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 591 PTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALI--------------N 636
+ + + + H+ + L + N L+ N
Sbjct: 216 RSDHSSNIKLRIHSIQAELR---RLLKSKPYE---------NCLLVLLNVQNAKAWNAFN 263
Query: 637 GLCRLRRIDQAYGLFI--DMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREI 694
C++ L + L T I ++ + E L + LD
Sbjct: 264 LSCKI--------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 695 E---PDYCTHSALLL-----------------KQLDKDYKVHAVE-YLESLT 725
+ + T + L K ++ D +E L L
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-08
Identities = 35/263 (13%), Positives = 75/263 (28%), Gaps = 19/263 (7%)
Query: 467 GNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITY 526
G+ + + D L + + P+L
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVL----DEIKPSSAPELQAV 68
Query: 527 NVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSII-HASLEMGDLRRGRDLFNNML 585
+ L + L + + + T+ + + +
Sbjct: 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD 128
Query: 586 RKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYN---ALINGLCRLR 642
+L + + RL+LA +MQ + A ++
Sbjct: 129 ------SLECMAMTVQILLKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGE 180
Query: 643 RIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIE-PDYCTH 701
++ AY +F +M ++ P + G W+ A + +E LD++ P+ +
Sbjct: 181 KLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 702 SALLLKQLDKDYKVHAVEYLESL 724
+L + L K +V YL L
Sbjct: 240 LVVLSQHLGKPPEV-TNRYLSQL 261
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 1e-06
Identities = 34/275 (12%), Positives = 67/275 (24%), Gaps = 33/275 (12%)
Query: 466 MGNLSMAREFFNEMLRKGLQPDRFAYTTQIA------GELKLGDTSEAYRLQEEML---- 515
GN A L P + Y+ +A G+ + + L ++
Sbjct: 27 DGNPDEAERLAKLALE--ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 84
Query: 516 AKGFPPD-LITYNVLVHGLCKLGSLEEANELLRK---MVGDGFIPDH----ITYTSIIHA 567
L + L G L+ A E K ++ + +
Sbjct: 85 QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 144
Query: 568 SLEMGDLRRGRDLFNNML----RKGLSPTLVTYTVLIHAHAARGRLELAFMYFSE----M 619
L + + L +LI ARG L+ A + +
Sbjct: 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204
Query: 620 QVKGIRPNVITYNALINGLCRLR--RIDQAYGLFIDMEEEGILPNKYTYTILINE---NC 674
+ I+ + + A + N + N
Sbjct: 205 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264
Query: 675 NAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQL 709
G ++ A + +E+ + + L L
Sbjct: 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 42/296 (14%), Positives = 85/296 (28%), Gaps = 38/296 (12%)
Query: 432 GDLEVAQQLKENMINQGILPD------VITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQ 485
G+ + A++L + + + LP ++ +++ G L+ + + + Q
Sbjct: 28 GNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 85
Query: 486 PD-----RFAYTTQIAGELKLGDTSEAYRLQEEMLA-------KGFPPDLITYNVLVHGL 533
D ++ Q G A+ QE+ + P + L
Sbjct: 86 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 145
Query: 534 CKLGSLEEANELLRK---MVGDGFIPDHI-TYTSIIHASLEMGDLRRGRDLFNNML---- 585
L+EA R ++ + +I SL GDL R N +
Sbjct: 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205
Query: 586 RKGLSPTLVTYT--VLIHAHAARGRLELAFMYFSEMQVKGIRPN---VITYNALINGLCR 640
++ V + G A + N + +
Sbjct: 206 NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 265
Query: 641 LRRIDQAYGLFIDMEEEGILPNKYTYTI--LINENC---NAGNWQEALRLYKEMLD 691
L + A + ++ E + L+ N AG +A R+ + L
Sbjct: 266 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 49/314 (15%), Positives = 85/314 (27%), Gaps = 60/314 (19%)
Query: 260 QEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPI 319
+ ALE L V +VL GEL ++ L++ ++ + Y
Sbjct: 38 KLALEELPPGWFYS---RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94
Query: 320 ICG-----YSEKGLLVEA-------LNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDA 367
+G L A L E + I L W R+ +A
Sbjct: 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154
Query: 368 RHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDG 427
+ + L S + LI
Sbjct: 155 EASARSGI-------------------------------EVLSSYQPQQQLQCLAMLIQC 183
Query: 428 LCRYGDLEVA----QQLKENMINQGILPDVITYTIMVNGSC--KMGNLSMAREFFNEMLR 481
GDL+ A +L+ + N D I+ V G+ + A + +
Sbjct: 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243
Query: 482 KGLQPDRF---AYTTQIAGELKLGDTSEAYRLQEEMLA----KGFPPDLI-TYNVLVHGL 533
+ F + ++ LG+ A + EE+ DL +L
Sbjct: 244 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303
Query: 534 CKLGSLEEANELLR 547
+ G +A +L
Sbjct: 304 WQAGRKSDAQRVLL 317
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 30/224 (13%), Positives = 64/224 (28%), Gaps = 22/224 (9%)
Query: 483 GLQPDRF-AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLI-TYNVLVHGLCKLGSLE 540
L P++ A + G+ L + + A G P + G L +++
Sbjct: 66 NLTPEQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQ 123
Query: 541 EANELLRKMVGDGFIPDHI-TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTL-VTYTV 598
+L + G P+ + S + ++ + GL+P V
Sbjct: 124 RLLPVLCQAH--GLTPEQVVAIASHDGGKQALETVQALLPVLCQAH--GLTPEQVVAIAS 179
Query: 599 LIHAHAARGRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEE 657
A ++ Q G+ P V+ + G L + + + + +
Sbjct: 180 NGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQRL----LPVLCQ 233
Query: 658 --GILPNK-YTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698
G+ P + Q L + + + P
Sbjct: 234 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQ 275
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.67 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.2 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.15 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.14 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.09 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.08 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.07 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.04 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.01 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.01 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.99 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.85 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.82 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.8 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.75 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.75 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.74 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.73 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.73 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.72 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.71 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.7 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.68 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.65 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.65 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.62 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.61 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.61 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.55 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.52 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.49 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.46 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.45 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.45 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.41 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.4 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.4 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.35 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.35 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.25 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.18 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.17 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.16 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.15 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.15 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.15 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.15 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.13 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.1 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.1 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.08 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.02 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.0 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.98 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.98 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.92 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.92 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.76 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.75 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.74 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.72 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.71 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.7 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.62 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.61 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.58 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.52 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.42 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.34 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.26 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.96 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.94 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.87 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.79 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.78 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.77 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.71 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.62 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.62 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.61 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.56 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.45 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.43 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.32 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.95 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.85 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.77 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.69 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.68 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.47 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.27 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.14 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.81 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.58 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.26 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.31 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.03 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.94 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.66 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.61 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.28 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.17 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.76 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.2 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.16 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.83 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.5 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.96 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.25 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.07 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.29 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.28 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.23 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.93 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.75 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.26 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.59 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 80.58 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-42 Score=383.42 Aligned_cols=489 Identities=11% Similarity=-0.003 Sum_probs=348.6
Q ss_pred ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004814 207 DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLIT 286 (729)
Q Consensus 207 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 286 (729)
++..|+.++..+.+.|++++|..+|+++.+. .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 4444555555555555555555555555432 344455555555555555555555555554332 344555555555
Q ss_pred HHHhCCCHHHHHHHHHHHHh---------------CCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004814 287 GFSRNGELEQARGLIRDMLK---------------LGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATY 351 (729)
Q Consensus 287 ~~~~~g~~~~A~~~~~~m~~---------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 351 (729)
+|.+.|++++|.++|+++.. .+.+.+..+|+.++.+|.+.|++++|.++|++|.+.++. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 55555555555555543211 122335667777777777777777777777777765433 44455
Q ss_pred HHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 004814 352 NILIYGLCKWGRVSDARH--R-FFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGL 428 (729)
Q Consensus 352 ~~li~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~ 428 (729)
..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 555544433322222111 1 344444343344555666677777788888888888877664 46777888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 004814 429 CRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAY 508 (729)
Q Consensus 429 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 508 (729)
.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. ..+..++..++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 88888888888888887765 3466777888888888888888888888887653 335777777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 509 RLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKG 588 (729)
Q Consensus 509 ~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 588 (729)
++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..++..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888887653 55788899999999999999999999999988753 477889999999999999999999999998875
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004814 589 LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK----GIRPN--VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN 662 (729)
Q Consensus 589 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (729)
+.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 567889999999999999999999999999875 56777 7899999999999999999999999999875 568
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhc
Q 004814 663 KYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLD 710 (729)
Q Consensus 663 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~ 710 (729)
..+|..++.+|.+.|++++|.+.+++++ .+.|+.......++.+|.
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESL--AISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHH--hcCCCChHHHHHHHHHHh
Confidence 8899999999999999999999999999 677876655555576664
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=371.49 Aligned_cols=488 Identities=11% Similarity=0.006 Sum_probs=423.3
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+...|..++..|.+.|++++|+.+|+++.+. .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 4667899999999999999999999999964 468889999999999999999999999998653 688999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhH
Q 004814 252 SFCKEGEMQEALELLWEMQGR---------------GCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSY 316 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 316 (729)
+|++.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+. .+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHH
Confidence 999999999999999954322 2244688999999999999999999999999998753 356667
Q ss_pred HHHHHHHHhCCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 004814 317 NPIICGYSEKGLLVEALN--L-EEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGY 393 (729)
Q Consensus 317 ~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 393 (729)
..++..+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 767665554443333222 1 555555555556677888899999999999999999999876 48999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 394 CRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAR 473 (729)
Q Consensus 394 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (729)
.+.|++++|+++|+++.+.+ +.+..+++.++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999998765 3478899999999999999999999999999764 668899999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004814 474 EFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDG 553 (729)
Q Consensus 474 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 553 (729)
++|+++.+... .+..++..++.++.+.|++++|+++++++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999998643 367899999999999999999999999999874 6688999999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004814 554 FIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK----GLSPT--LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN 627 (729)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 627 (729)
. .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+
T Consensus 472 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 472 Q-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred C-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 3 47899999999999999999999999999876 55677 7899999999999999999999999999874 348
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004814 628 VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINEN 673 (729)
Q Consensus 628 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 673 (729)
..+|..++.+|.+.|++++|.+.|+++.+.. +.+...+..+..+|
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 8999999999999999999999999999964 45667777776655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-28 Score=252.89 Aligned_cols=379 Identities=16% Similarity=0.078 Sum_probs=206.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 285 ITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRV 364 (729)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 364 (729)
...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+..+ .+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 344555566666666666655543 22344455555555555566655555555554322 2445555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 365 SDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENM 444 (729)
Q Consensus 365 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 444 (729)
++|.+.|+++....+ .+..+|..++.++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.++++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555554332 233445555555555555555555555554432 112233344444444445555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 445 INQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLI 524 (729)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 524 (729)
++.. +.+..+|..+...+.+.|++++|...|+++ ++.+ |.+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-----------------------------------l~~~-p~~~~ 204 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA-----------------------------------VTLD-PNFLD 204 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH-----------------------------------HHHC-TTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------------------HhcC-CCcHH
Confidence 4432 223444444444444555555555544444 4432 33455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004814 525 TYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHA 604 (729)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 604 (729)
.+..+...+...|++++|...++++++..+ .+..++..+...+.+.|++++|.+.++++.+.+ +.+..+|..++.++.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 555556666666666666666666655432 245556666666666666666666666666553 334556666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 605 ARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALR 684 (729)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 684 (729)
+.|++++|...++++.+.. +.+..++..++..+.+.|++++|...++++.+.. +.+..++..++.++.+.|++++|..
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666542 3355666666666666666666666666666542 3345566666666666677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHhhhc
Q 004814 685 LYKEMLDREIEPDYCTHSALLLKQLD 710 (729)
Q Consensus 685 ~~~~m~~~~~~pd~~~~~~ll~~~l~ 710 (729)
.|++++ .+.|+.......++..+.
T Consensus 361 ~~~~a~--~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 361 HYKEAI--RISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHH--TTCTTCHHHHHHHHHHHH
T ss_pred HHHHHH--hhCCCCHHHHHhHHHHHH
Confidence 666666 455554333222244443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-27 Score=251.17 Aligned_cols=379 Identities=15% Similarity=0.024 Sum_probs=194.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004814 183 YTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEA 262 (729)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (729)
+.+.|++++|++.+.++.+..+. +...+..+...+...|++++|..+++...+.. +.+..+|..++..+.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 34444444444444444443322 23333344444444455555555544444432 33444455555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 263 LELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 263 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
.+.|+++.+.. +.+..+|..++..+.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55555544431 1123344445555555555555555555554433 113334444444555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYN 422 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~ 422 (729)
.+. +..+|..+...+.+.|++++|.+.|++++..++ .+...|..+...+...|++++|+..+++..... +.+..++.
T Consensus 165 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 QPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 222 344555555555555555555555555554432 334445555555555555555555555554432 12344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 004814 423 TLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLG 502 (729)
Q Consensus 423 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 502 (729)
.+...+...|++++|...++++++.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 55555555555555555555555543 2344555556666666666666666666655542 224555555556666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004814 503 DTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMG 572 (729)
Q Consensus 503 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 572 (729)
++++|...++++.+.. |.+..++..++..+.+.|++++|...++++++..+ .+...+..+...+...|
T Consensus 320 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHcc
Confidence 6666666666655542 44556666666666666666666666666665432 24555666655555544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=268.01 Aligned_cols=204 Identities=20% Similarity=0.242 Sum_probs=119.9
Q ss_pred HHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---------HHH
Q 004814 227 AREVYRMMGEFGIKPSI-VTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGE---------LEQ 296 (729)
Q Consensus 227 A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~ 296 (729)
+..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444455544444333 24666677777777777777777777777777777777777777765543 455
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 297 ARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 297 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 376 (729)
|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 004814 377 KNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR 430 (729)
Q Consensus 377 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~ 430 (729)
.|+.||..+|++||.+|++.|+.++|.++|++|.+.+..|+..||+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666555544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=262.76 Aligned_cols=206 Identities=15% Similarity=0.170 Sum_probs=169.6
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCC---------HH
Q 004814 261 EALELLWEMQGRGCSPNG-VTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGL---------LV 330 (729)
Q Consensus 261 ~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~ 330 (729)
.+..+.+++.+++..+.. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 445556677666655443 35788899999999999999999999999999999999999999887654 67
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004814 331 EALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELR 410 (729)
Q Consensus 331 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 410 (729)
+|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 411 SRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKM 466 (729)
Q Consensus 411 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (729)
+.|+.||..||++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988899999999988888753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-24 Score=236.43 Aligned_cols=456 Identities=11% Similarity=-0.011 Sum_probs=294.0
Q ss_pred hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004814 208 VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITG 287 (729)
Q Consensus 208 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 287 (729)
...+......+.+.|++++|+..|+++.+.+ |+..+|..++.++.+.|++++|.+.++++.+.+ +.+..+|..++..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3445566666777777777777777776653 566667777777777777777777777766652 3345566666667
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 288 FSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDA 367 (729)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 367 (729)
+.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+..-......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 154 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK------- 154 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh-------
Confidence 7777777777777776666542 33334444444443333333333333333332222222111110000000
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 004814 368 RHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR---YGDLEVAQQLKENM 444 (729)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~ 444 (729)
....|+.......+. ........ .....+.+...+......+.. .|++++|...++++
T Consensus 155 ---------~~~~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 155 ---------QENLPSVTSMASFFG----IFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHT----TSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---------ccCCchhHHHHHHHh----hcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 001122111111100 00000000 000001123344444444443 78888888888888
Q ss_pred HH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 004814 445 IN-----QGI--------LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQ 511 (729)
Q Consensus 445 ~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 511 (729)
++ ..- +.+..++..+...+...|++++|...++++.+.... ...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77 311 223567777888888889999999999888887433 777778888888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 512 EEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSP 591 (729)
Q Consensus 512 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 591 (729)
+.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 8888764 556778888888999999999999999998887533 56778888888999999999999999988764 45
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIR-PN----VITYNALINGLCR---LRRIDQAYGLFIDMEEEGILPNK 663 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 663 (729)
+..++..++..|...|++++|...++++.+.... ++ ...+..++.++.. .|++++|...++++.+.. +.+.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 449 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSE 449 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccH
Confidence 6778888899999999999999999988764211 11 3378888889999 899999999999998864 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004814 664 YTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTH 701 (729)
Q Consensus 664 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~ 701 (729)
.++..++.++.+.|++++|...+++++ .+.|+....
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~--~~~~~~~~~ 485 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESA--DLARTMEEK 485 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCSSHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH--HhccccHHH
Confidence 788889999999999999999999998 566765443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-24 Score=232.85 Aligned_cols=449 Identities=10% Similarity=-0.039 Sum_probs=284.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
...+..++..|.+.|++++|+..|+++++.+ |+..++..++.++.+.|++++|...|+++.+.+ +.+..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567778899999999999999999999976 688999999999999999999999999999876 6678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHH
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 332 (729)
+.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 154 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK------- 154 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh-------
Confidence 999999999999999999874 345555555555555444444444444333332222222111111000000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 004814 333 LNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCR---SGNIGEAFLLFDEL 409 (729)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m 409 (729)
....|+.......+..+...... . ....+.+...+......+.. .|++++|+..|+++
T Consensus 155 ---------~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 155 ---------QENLPSVTSMASFFGIFKPELTF----A------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC----S------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---------ccCCchhHHHHHHHhhcCHHHHH----H------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 00111211111111000000000 0 00000112233333333332 45555555555555
Q ss_pred hh-----C--CC------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 410 RS-----R--NL------VPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFF 476 (729)
Q Consensus 410 ~~-----~--~~------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (729)
.+ . .. +.+..++..+...+...|++++|...++++.+.... ..++..+...+...|++++|.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44 2 00 113445566666666677777777777766665422 666666677777777777777777
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004814 477 NEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIP 556 (729)
Q Consensus 477 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 556 (729)
+++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .
T Consensus 294 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 370 (514)
T 2gw1_A 294 DKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-E 370 (514)
T ss_dssp HHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-T
T ss_pred HHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-c
Confidence 777665322 45566666667777777777777777776653 44566777777777788888888888887776542 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCH
Q 004814 557 DHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL-SPT----LVTYTVLIHAHAA---RGRLELAFMYFSEMQVKGIRPNV 628 (729)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~ 628 (729)
+..++..+...+...|++++|...++++.+... .++ ...+..++..+.. .|++++|...++++.+.. +.+.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 449 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSE 449 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccH
Confidence 456777777888888888888888887776421 111 3377888888888 888888888888887753 2356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
..+..++.+|.+.|++++|...++++.+.
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 77788888888888888888888888875
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-23 Score=225.03 Aligned_cols=442 Identities=12% Similarity=-0.014 Sum_probs=237.6
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
....+..++..|.+.|++++|+..|+++++..+. +..++..++.++.+.|++++|++.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 3566778889999999999999999999987754 77888889999999999999999999998875 567888899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--ccChhhHHHHHHHHHhCCCH
Q 004814 252 SFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGL--KVSAHSYNPIICGYSEKGLL 329 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~ 329 (729)
++...|++++|...|+.+ .. .|+.. ...+..+...+...+|...++++.+... .+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999643 22 22221 2223445555666788888888865421 11111223334445555665
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 004814 330 VEALNLEEEMVTRGVAPTLA-TYNILIYGLCK--------WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIG 400 (729)
Q Consensus 330 ~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 400 (729)
+.+...+...... .+... ....+...+.. .|++++|...++++.+..+ .+...+..+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~----------- 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENA----------- 242 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHH-----------
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHH-----------
Confidence 5555444332221 11111 12222221111 1345555555555554332 111110000
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 401 EAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEML 480 (729)
Q Consensus 401 ~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (729)
..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|.+.++++.
T Consensus 243 -----------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 243 -----------------ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 1123333334444444444444444444432 224444444444444455555555555444
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004814 481 RKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHIT 560 (729)
Q Consensus 481 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 560 (729)
+.... +..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..+ .+...
T Consensus 304 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 380 (537)
T 3fp2_A 304 DLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEV 380 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHH
T ss_pred ccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 43211 33444444444555555555555555544432 33344555555555555555555555555555432 23445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCC
Q 004814 561 YTSIIHASLEMGDLRRGRDLFNNMLRKG-----LSPTLVTYTVLIHAHAAR----------GRLELAFMYFSEMQVKGIR 625 (729)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~ 625 (729)
+..+...+...|++++|.+.++++.+.. .......+..+...+... |++++|...++++.+.. +
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 459 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-P 459 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-C
Confidence 5555555556666666666665554321 011122233444455555 66666666666666542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 626 PNVITYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 626 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
.+...+..++.+|.+.|++++|.+.|+++.+.
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 24555666666666666666666666666654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-23 Score=225.29 Aligned_cols=437 Identities=13% Similarity=0.060 Sum_probs=292.1
Q ss_pred hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004814 208 VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITG 287 (729)
Q Consensus 208 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 287 (729)
...+..+...+.+.|++++|+..|+++++.. +.+..+|..++.++.+.|++++|.+.|+++.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3445556666666666666666666666554 4455666666666666666666666666665542 2245555556666
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 288 FSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDA 367 (729)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 367 (729)
+...|++++|...|+ ..... |+ .....+..+...+.. .+|
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~-----------------------------------~~a 142 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLN--GD--FDGASIEPMLERNLN-----------------------------------KQA 142 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHH-----------------------------------HHH
T ss_pred HHHcCCHHHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHH-----------------------------------HHH
Confidence 666666666666664 22211 11 111112223333333 444
Q ss_pred HHHHHHHHHCCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHh-hHHHHHHHH--------HhcCCHHH
Q 004814 368 RHRFFEMLRKNV--IPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVV-TYNTLIDGL--------CRYGDLEV 436 (729)
Q Consensus 368 ~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~ll~~~--------~~~g~~~~ 436 (729)
...++++....+ .+........+..+....+.+.+...+.+.... .+... ....+...+ ...|++++
T Consensus 143 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 220 (537)
T 3fp2_A 143 MKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTK 220 (537)
T ss_dssp HHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 444444433210 000111122233334444444444333322211 11111 111111111 12257888
Q ss_pred HHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 004814 437 AQQLKENMINQGILPD-------VITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYR 509 (729)
Q Consensus 437 A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 509 (729)
|..+++++++.. +.+ ..++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|..
T Consensus 221 A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 221 STDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHH
Confidence 888888888764 223 235667778888999999999999999987 4567888888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 510 LQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL 589 (729)
Q Consensus 510 l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 589 (729)
.++.+.+.. +.+..++..+...+...|++++|...++++++..+. +...+..+...+...|++++|.+.++++.+..
T Consensus 298 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 298 FFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998874 667889999999999999999999999999987533 56788999999999999999999999999875
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHH
Q 004814 590 SPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKG-----IRPNVITYNALINGLCRL----------RRIDQAYGLFIDM 654 (729)
Q Consensus 590 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m 654 (729)
+.+...+..++..+...|++++|...++++.+.. .......+..+..++... |++++|...++++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 5667899999999999999999999999987642 111223345556778888 9999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 655 EEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 655 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
.+.. +.+...+..++.+|.+.|++++|.+.|+++++ +.|+
T Consensus 455 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~ 494 (537)
T 3fp2_A 455 CELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LART 494 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC
Confidence 9874 55778999999999999999999999999994 4454
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-22 Score=215.98 Aligned_cols=316 Identities=13% Similarity=0.066 Sum_probs=235.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+..++..++..+.+.|++++|...|++++..+|. +...+..++.+|.+.|++++|+..|++++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---------------NYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357788889999999999999999999999887765 46788889999999999999999999999
Q ss_pred HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCh---hhHHHHH------------HHHHhcCCHHHHHHH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSI---VTYNTML------------DSFCKEGEMQEALEL 265 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li------------~~~~~~g~~~~A~~~ 265 (729)
+.++. +..++..++.+|.+.|++++|...|+++.+.+ +.+. .++..++ ..+.+.|++++|...
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 87754 67788889999999999999999999998864 3344 5665553 447888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 004814 266 LWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVA 345 (729)
Q Consensus 266 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (729)
|+++.+. .+.+...+..++..|.+.|++++|.+.|+++.+.. +.+..++..++..|...|++++|++.|+++....+.
T Consensus 166 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8888775 24467778888888888888888888888888764 346778888888888888888888888888765332
Q ss_pred CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 346 PTLATYNIL------------IYGLCKWGRVSDARHRFFEMLRKNVIPD-----IISYNTLLYGYCRSGNIGEAFLLFDE 408 (729)
Q Consensus 346 p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~ 408 (729)
+...+..+ +..+.+.|++++|.+.|++++... |+ ...+..+...+.+.|++++|+..+++
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 244 -HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444443 666777777777777777776643 22 33566666777777777777777777
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 409 LRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMV 460 (729)
Q Consensus 409 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 460 (729)
+.+.. +.+..++..+..+|...|++++|...++++++.. +.+...+..+.
T Consensus 321 a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 321 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 66542 2355666677777777777777777777776653 23444444444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-22 Score=213.01 Aligned_cols=330 Identities=12% Similarity=0.040 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 190 EQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEM 269 (729)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 269 (729)
..+...+.++....+. +...+..++..+.+.|++++|+.+|+++.+.. +.+..+|..++.++.+.|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455555544432 45556666666666666666666666666543 445666666666666666666666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 004814 270 QGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSA---HSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP 346 (729)
Q Consensus 270 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 346 (729)
.+.+ +.+..++..++..|.+.|++++|.+.|+++.+.+. .+. .++..++..+..
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--------------------- 143 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEM--------------------- 143 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHH---------------------
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHH---------------------
Confidence 6542 23455666666666666666666666666665431 122 344444333110
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLID 426 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~ 426 (729)
..+..+...+.+.|++++|.+.|+++....+ .+...+..++..|.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 144 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 144 --QRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 0111223345556666666666666655433 345555666666666666666666666655432 234555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----Hh
Q 004814 427 GLCRYGDLEVAQQLKENMINQGILPDVITYTIM------------VNGSCKMGNLSMAREFFNEMLRKGLQPD-----RF 489 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~ 489 (729)
.+...|++++|...++++.+.. +.+...+..+ +..+.+.|++++|.+.|+++.+.. |+ ..
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~ 296 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVR 296 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHH
Confidence 6666666666666666665542 2233333333 556666666777776666666642 22 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 490 AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGD 552 (729)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 552 (729)
.+..+...+.+.|++++|+..++.+.+.. |.+..+|..++.+|...|++++|...++++++.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45555566666666666666666665542 445666666666666666666666666666654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-18 Score=183.49 Aligned_cols=355 Identities=14% Similarity=0.018 Sum_probs=173.8
Q ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCH
Q 004814 277 NGVTYNVLITGFSR----NGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE----KGLLVEALNLEEEMVTRGVAPTL 348 (729)
Q Consensus 277 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~ 348 (729)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555555555555 555666666666555543 34455555555555 555555555555555543 34
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHhh
Q 004814 349 ATYNILIYGLCK----WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCR----SGNIGEAFLLFDELRSRNLVPTVVT 420 (729)
Q Consensus 349 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~ 420 (729)
..+..|...|.. .+++++|.+.|++....| +...+..+...|.. .++.++|++.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444445555554 455555555555555432 33444444444444 444555555555544433 3444
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004814 421 YNTLIDGLCR----YGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIA 496 (729)
Q Consensus 421 ~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 496 (729)
+..+...|.. .++.++|.+++++..+.+ +...+..+...|...
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g------------------------------ 232 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG------------------------------ 232 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC------------------------------
Confidence 4444444444 444555555555444432 333444444444430
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 004814 497 GELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCK----LGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEM- 571 (729)
Q Consensus 497 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~- 571 (729)
....+++++|...++...+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+...|...
T Consensus 233 -~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~ 305 (490)
T 2xm6_A 233 -IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGA 305 (490)
T ss_dssp -SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCB
T ss_pred -CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Confidence 001444444544444444432 33334444444444 455555555555554432 233444444444444
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 004814 572 ----GDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG---RLELAFMYFSEMQVKGIRPNVITYNALINGLCR---- 640 (729)
Q Consensus 572 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---- 640 (729)
+++++|...+++..+.+ +...+..+...|...| +.++|++.|++..+.| +...+..+...|..
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 45555555555555443 3334444555554433 4555555555555542 44455555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 004814 641 LRRIDQAYGLFIDMEEEGILPNKYTYTILINENCN----AGNWQEALRLYKEMLDR 692 (729)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 692 (729)
.++.++|...|++..+.| +...+..|...|.. .+++++|...|+++.+.
T Consensus 380 ~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 455555555555555543 34445555555554 45555555555555543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-19 Score=184.65 Aligned_cols=331 Identities=12% Similarity=0.030 Sum_probs=226.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLID 426 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~ 426 (729)
++..+..+...+...|++++|...|++++...+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345566666667777777777777777666543 445666666666666677777776666666543 224455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 004814 427 GLCRYGDLEVAQQLKENMINQGIL--PDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDT 504 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 504 (729)
.+...|++++|...++++.+.... .+...+..+...+. ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 666666666666666666654210 12223322211100 00122234567777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 505 SEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNM 584 (729)
Q Consensus 505 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (729)
++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888777663 5567778888888888888888888888887764 336677888888888888888888888888
Q ss_pred HHCCCCCChhhHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 004814 585 LRKGLSPTLVTYT------------VLIHAHAARGRLELAFMYFSEMQVKGIRPNV----ITYNALINGLCRLRRIDQAY 648 (729)
Q Consensus 585 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~ 648 (729)
.+.. +.+...+. .++..+.+.|++++|...++++.+.... +. ..+..++.++.+.|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7763 33344333 2366788999999999999999885322 33 23556788999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 004814 649 GLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQL 709 (729)
Q Consensus 649 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l 709 (729)
..++++.+.. +.+..++..++.++...|++++|.+.+++++ .+.|+.......+..+.
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~--~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ--EHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCChHHHHHHHHHH
Confidence 9999999863 5578899999999999999999999999999 77787655444434443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-19 Score=184.54 Aligned_cols=314 Identities=8% Similarity=-0.039 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
+..+..++..+...|++++|...+++++..+|. +...+..++.+|...|++++|+..|+++++..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---------------NYIAYYRRATVFLAMGKSKAALPDLTKVIALK 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 455666666666677777777777666666554 34556666666666677777777766666654
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIK---PSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVT 280 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 280 (729)
+. +...+..+..++...|++++|...|+++.+.. + .+...+..+..... ...
T Consensus 68 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~ 122 (359)
T 3ieg_A 68 MD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQR 122 (359)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHH
T ss_pred CC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHH
Confidence 33 45556666666666666666666666666543 2 23333333310000 000
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 281 YNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK 360 (729)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 360 (729)
+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+..+. +...+..+...+..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 1111344444455555555555544432 223444444555555555555555555554443221 34444555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHH------------HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH----hhHHHH
Q 004814 361 WGRVSDARHRFFEMLRKNVIPDIISY------------NTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV----VTYNTL 424 (729)
Q Consensus 361 ~g~~~~A~~~~~~~~~~~~~~~~~~~------------~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~~~~l 424 (729)
.|++++|.+.+++..+..+ .+...+ ..+...+.+.|++++|...++++.+.... +. ..+..+
T Consensus 201 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l 278 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERI 278 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence 5555555555555544332 122211 12245566667777777777666654311 22 223445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 425 IDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 425 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
..++...|++++|...++++++.. +.+..++..+...+.+.|++++|.+.|+++.+.
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666667777777777777776653 345666777777777777777777777777765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-18 Score=182.95 Aligned_cols=371 Identities=14% Similarity=0.048 Sum_probs=269.6
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHH
Q 004814 225 VKAREVYRMMGEFGIKPSIVTYNTMLDSFCK----EGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSR----NGELEQ 296 (729)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~ 296 (729)
..+...+....+. .+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++
T Consensus 24 ~~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 3456677777664 478888999999998 899999999999998874 67788889999998 899999
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004814 297 ARGLIRDMLKLGLKVSAHSYNPIICGYSE----KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK----WGRVSDAR 368 (729)
Q Consensus 297 A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 368 (729)
|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999876 67788889999988 899999999999999875 67788888988887 88999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHH
Q 004814 369 HRFFEMLRKNVIPDIISYNTLLYGYCR----SGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR----YGDLEVAQQL 440 (729)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~ 440 (729)
+.|++..+.+ +...+..+...|.. .++.++|++.|++..+.+ +...+..+...|.. .++.++|..+
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999864 67888899999988 899999999999998876 56778888888876 7899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 441 KENMINQGILPDVITYTIMVNGSCK----MGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLA 516 (729)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 516 (729)
+++..+.+ +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|....
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~-------------- 305 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGA-------------- 305 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCB--------------
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC--------------
Confidence 99988765 55667777777766 677777777777776543 3334444444444330
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCh
Q 004814 517 KGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMG---DLRRGRDLFNNMLRKGLSPTL 593 (729)
Q Consensus 517 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~ 593 (729)
....+++++|...+++..+.+ +...+..+...|...| ++++|.+.|++..+.| +.
T Consensus 306 ----------------~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~ 363 (490)
T 2xm6_A 306 ----------------EGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EK 363 (490)
T ss_dssp ----------------TTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CH
T ss_pred ----------------CCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CH
Confidence 000145555555555555443 2334444444444433 4556666666655543 45
Q ss_pred hhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 004814 594 VTYTVLIHAHAA----RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCR----LRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 594 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 658 (729)
..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|...|++..+.|
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 555566666655 566666666666666643 45555666666665 566666666666666654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.9e-16 Score=174.09 Aligned_cols=377 Identities=13% Similarity=0.092 Sum_probs=231.3
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEFG--IKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFS 289 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 289 (729)
...++.|...|.+.+|+++++++...+ +..+...-+.++....+. +..+..+...+.... + ..-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 345556666777777777777666321 012334445555555554 445555555544422 1 222556666
Q ss_pred hCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 290 RNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARH 369 (729)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 369 (729)
..|.+++|..+|++... .....+.++ ...|++++|.++.++.. +..+|..+..++.+.|++++|.+
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 67777777777776421 112222222 25667777777766441 46667777777777777777777
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 370 RFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGI 449 (729)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 449 (729)
.|.+. .|...|..++..+.+.|++++|.+.|...++.. ++....+.++.+|++.+++++..... +
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 77543 456667777777777777777777777666543 23333334777777777766533332 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 450 LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVL 529 (729)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l 529 (729)
.++...|..+...|...|++++|..+|..+ ..|..+..++.+.|++++|++.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 335556666777777777777777777664 36677777777777777777777654 256777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc--C
Q 004814 530 VHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR--G 607 (729)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g 607 (729)
..+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++..+... +.....|+-+...|++- +
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 77777777777776655432 2345556677777777788888888877776554 34455666666666553 3
Q ss_pred CHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 004814 608 RLELAFMYFSEMQVKGIRP------NVITYNALINGLCRLRRIDQAY 648 (729)
Q Consensus 608 ~~~~A~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~ 648 (729)
+..++.++|..-.. +++ +...|..++..|.+.|+++.|.
T Consensus 1331 klmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1331 KMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 45555555543322 222 4556777777777778877777
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-19 Score=180.53 Aligned_cols=294 Identities=11% Similarity=0.000 Sum_probs=204.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004814 416 PTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQI 495 (729)
Q Consensus 416 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 495 (729)
.+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|...++++.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 344455556666666666666666666666553 334445555556666666666666666666665322 445566666
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 496 AGELKLG-DTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDL 574 (729)
Q Consensus 496 ~~~~~~g-~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (729)
..+...| ++++|...++.+.+.. +.+...|..+...+...|++++|...++++.+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 6666666 6777777777666653 445666777777788888888888888877776432 445566677788888888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 004814 575 RRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKG--------IRPNVITYNALINGLCRLRRIDQ 646 (729)
Q Consensus 575 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------~~p~~~~~~~l~~~~~~~g~~~~ 646 (729)
++|.+.++++.+.. +.+..++..++..+...|++++|...++++.+.. .+.+...+..++.+|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888887764 5567778888888888888888888888877631 13345678888888889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhh-ccchhhcH
Q 004814 647 AYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQL-DKDYKVHA 717 (729)
Q Consensus 647 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l-~~~g~~~a 717 (729)
|...++++.+.. +.+...+..++.++.+.|++++|.+.+++++ .+.|+.......++.++ ...|+.++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL--GLRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT--TTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH--ccCCCchHHHHHHHHHHHHHhCchhc
Confidence 999999888864 4567788888888999999999999999888 67776555455547777 45555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-17 Score=181.36 Aligned_cols=420 Identities=10% Similarity=0.010 Sum_probs=265.9
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+...|..++. +.+.|++++|..+|+++++..+. +...|...+..+.+.|++++|..+|+++++.. |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5677888887 47889999999999999987644 67789999999999999999999999999864 67777877775
Q ss_pred HH-HhcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHhCCCccChhh
Q 004814 252 SF-CKEGEMQEALE----LLWEMQG-RGCSP-NGVTYNVLITGFSR---------NGELEQARGLIRDMLKLGLKVSAHS 315 (729)
Q Consensus 252 ~~-~~~g~~~~A~~----~~~~m~~-~~~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~ 315 (729)
.. ...|++++|.+ +|++... .|..| +...|...+....+ .|++++|+.+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 43 34577776665 6766654 24443 45677777776654 6788999999999887311111123
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC----
Q 004814 316 YNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEM------LRKN---VIPD---- 382 (729)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~---~~~~---- 382 (729)
|..........|. .+...++. .+.++++.|..++.++ .+.. +.|+
T Consensus 168 ~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 168 WRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 3222221100010 00011110 0123445555544442 1111 1222
Q ss_pred ----HhHHHHHHHHHHHc----CCH----HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-------cCCHH-------H
Q 004814 383 ----IISYNTLLYGYCRS----GNI----GEAFLLFDELRSRNLVPTVVTYNTLIDGLCR-------YGDLE-------V 436 (729)
Q Consensus 383 ----~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~ 436 (729)
...|...+...... ++. ..+..+|++..... +.+...|..++..+.+ .|+++ +
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 23454444333221 122 35666777766542 3355666666666654 57765 7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 437 AQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD--RFAYTTQIAGELKLGDTSEAYRLQEEM 514 (729)
Q Consensus 437 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~ 514 (729)
|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ ...|...+..+.+.|+.++|..+|+..
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7777777775222445777777777777788888888888887775 333 246777777777777788888888877
Q ss_pred HHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC
Q 004814 515 LAKGFPPDLITYNVLVHG-LCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKG-LSPT 592 (729)
Q Consensus 515 ~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 592 (729)
.+.. +.+...|...+.. +...|+.++|..+|++.++..+ .+...|..++..+.+.|+.++|..+|++.+..+ ..|+
T Consensus 383 l~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred Hhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 7652 2223333322222 2357888888888888777542 356777788888888888888888888887763 1221
Q ss_pred --hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 593 --LVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 593 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
...|...+......|+.+.+..+++++.+.
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 336777777777788888888888887764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-15 Score=168.95 Aligned_cols=444 Identities=14% Similarity=0.114 Sum_probs=283.1
Q ss_pred ChHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCC
Q 004814 89 DPELLVRVLNRIREKPRIALRFFRWVETQ-PGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGL 167 (729)
Q Consensus 89 ~~~~~~~vl~~~~~~~~~al~~f~~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 167 (729)
||++=..||.. +-..-..+.+|...- -.-..++.--...++.+...|.+.+|+.++++++.. +..+
T Consensus 952 d~~lW~~vl~~---~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s~f--------- 1018 (1630)
T 1xi4_A 952 DPELWGSVLLE---SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSVF--------- 1018 (1630)
T ss_pred CHHHHHHHhcC---CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCcc---------
Confidence 55555555532 223445677785431 112445566678888899999999999999998833 2200
Q ss_pred CCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHH
Q 004814 168 SSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYN 247 (729)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 247 (729)
+ .+..+-+.|+..-.+. +..+..+...+.-.. + ...++..+...|.+++|..+|++.. -.....+
T Consensus 1019 s--~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~ 1083 (1630)
T 1xi4_A 1019 S--EHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQ 1083 (1630)
T ss_pred c--ccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHH
Confidence 0 1233444455555444 334444444443321 1 2346777778888888888888753 1222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCC
Q 004814 248 TMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKG 327 (729)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 327 (729)
.++. ..|++++|.++.++.. +..+|..+..++...|++++|.+.|.+. .|...|..++..+.+.|
T Consensus 1084 VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lG 1148 (1630)
T 1xi4_A 1084 VLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 1148 (1630)
T ss_pred HHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcC
Confidence 3333 5577888888877542 4667778888888888888888888553 36677777888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 004814 328 LLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFD 407 (729)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 407 (729)
++++|.+.+....+.. ++....+.++.+|++.+++++..... . + ++...|..+...|...|++++|..+|.
T Consensus 1149 kyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-~--~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1149 NWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-G--PNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred CHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-C--CCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8888888887766654 23333334778888888777533322 1 1 566667778888888888888888887
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 408 ELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD 487 (729)
Q Consensus 408 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 487 (729)
.. ..|..+..++++.|+++.|.+.+++. .+..+|..+..+|...|++..|......+ ..+
T Consensus 1220 kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~ 1279 (1630)
T 1xi4_A 1220 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 1279 (1630)
T ss_pred hh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcC
Confidence 74 36777888888888888888888766 25677888888888888888777766542 225
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCC----CCCCHHHH
Q 004814 488 RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKL--GSLEEANELLRKMVGDG----FIPDHITY 561 (729)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~----~~p~~~~~ 561 (729)
+..+..++..|.+.|.+++|+.+++..+... +.....|+.+...+++. ++..++.+.|..-.... ..-+...|
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW 1358 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLW 1358 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHH
Confidence 6666677888888888888888887777654 44455666666666654 34445555554332210 00134567
Q ss_pred HHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCCCChhhHHHHHHHHHHcC
Q 004814 562 TSIIHASLEMGDLRRGRDLF-------------NNMLRKGLSPTLVTYTVLIHAHAARG 607 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g 607 (729)
..+...|.+.|+++.|.... ++.+.+ ..|...|...+.-|....
T Consensus 1359 ~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1359 AELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence 77777888888888777322 222212 456667766666666444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-17 Score=177.00 Aligned_cols=431 Identities=12% Similarity=0.021 Sum_probs=306.6
Q ss_pred HHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004814 196 FNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCS 275 (729)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 275 (729)
|++.++..+. |...|..++. +.+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|..+|+++... .
T Consensus 2 le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 4555665544 7788888888 478899999999999999864 667778999999999999999999999999886 4
Q ss_pred CCHHHHHHHHHHH-HhCCCHHHHHH----HHHHHHhC-CCc-cChhhHHHHHHHHHh---------CCCHHHHHHHHHHH
Q 004814 276 PNGVTYNVLITGF-SRNGELEQARG----LIRDMLKL-GLK-VSAHSYNPIICGYSE---------KGLLVEALNLEEEM 339 (729)
Q Consensus 276 p~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 339 (729)
|+...|...+... ...|+.++|.+ +|++.++. |.. .+...|...+..... .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6877777777533 45677776665 66666543 433 345677777776554 67788888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH------hhCC
Q 004814 340 VTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDEL------RSRN 413 (729)
Q Consensus 340 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~~ 413 (729)
.+....+....|..........|. ..+..+ +. ...+++++|..++.++ .+..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~-------------------l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-HLAKKM-------------------IE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-HHHHHH-------------------HH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-hHHHHH-------------------HH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 773111111223222221111111 111111 11 1234566777766652 2221
Q ss_pred ---CCCC--------HhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cC
Q 004814 414 ---LVPT--------VVTYNTLIDGLCRY----GDL----EVAQQLKENMINQGILPDVITYTIMVNGSCK-------MG 467 (729)
Q Consensus 414 ---~~~~--------~~~~~~ll~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g 467 (729)
++|+ ...|...+...... ++. ..+..+|++++... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2343 24555555433322 232 47888999998863 5678899999888876 79
Q ss_pred CHH-------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 004814 468 NLS-------MAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL-ITYNVLVHGLCKLGSL 539 (729)
Q Consensus 468 ~~~-------~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~li~~~~~~g~~ 539 (729)
+++ +|..++++.++.-.+.+...+..++..+.+.|++++|..+++.+++.. +.+. ..|..++..+.+.|++
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCH
Confidence 987 999999999873223357788889999999999999999999999863 3343 5899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 540 EEANELLRKMVGDGFIPDHITYTSIIHA-SLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSE 618 (729)
Q Consensus 540 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (729)
++|.++|++.++.... +...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++
T Consensus 373 ~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 373 KSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 9999999999986432 33333332222 346899999999999998874 55688999999999999999999999999
Q ss_pred HHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 619 MQVKGI-RP--NVITYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 619 ~~~~g~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
+...+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998642 22 2447888888889999999999999999875
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-18 Score=175.72 Aligned_cols=287 Identities=11% Similarity=-0.005 Sum_probs=177.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+...+..++..+...|++++|..+++++++.+|. +...+..++..+...|++++|...++++.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 83 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---------------HASCLPVHIGTLVELNKANELFYLSHKLV 83 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CTTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------ChhhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345555666777777777777777777777776654 23344455666677777777777777777
Q ss_pred HCCCCCChHhHHHHHHHHHHCC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNG-FSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGV 279 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 279 (729)
+..+. +...+..+...+...| ++++|...|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.. +.+..
T Consensus 84 ~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 160 (330)
T 3hym_B 84 DLYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHL 160 (330)
T ss_dssp HHCTT-STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSH
T ss_pred HhCcC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHH
Confidence 76543 5566667777777777 7777777777777654 4456667777777777777777777777776652 22345
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CCCCHHHH
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRG--------VAPTLATY 351 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~~~ 351 (729)
.+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. .+....++
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHH
Confidence 55666677777777777777777776654 3355666666666666677776666666665521 02233455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 004814 352 NILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGL 428 (729)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~ 428 (729)
..+...+.+.|++++|.+.+++..+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 240 ~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 240 NNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 5566666666666666666666555433 344555555555555555555555555554432 12334444444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-18 Score=178.78 Aligned_cols=304 Identities=15% Similarity=0.022 Sum_probs=142.8
Q ss_pred HcCCCHHHHHH-HHHHHHHCCCC---CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004814 184 TKKSMVEQCLL-VFNKMLRNGLL---PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM 259 (729)
Q Consensus 184 ~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (729)
...|++++|+. .|++..+..+. .+...+..+...+.+.|++++|...|+++.+.. +.+..++..++..+.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34456666666 66655543221 123445666666667777777777777766654 44566666666777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004814 260 QEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEM 339 (729)
Q Consensus 260 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (729)
++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 77777776666552 335566666666667777777777777766665322 22221111000 00 0
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 004814 340 VTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP-DIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV 418 (729)
Q Consensus 340 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 418 (729)
.. ....+..+.. +...|++++|.+.|+++....+.. +..++..+...+...|++++|+..++++.... +.+.
T Consensus 179 ----~~-~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 ----AG-LGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----hc-ccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 00 0000001111 114444444544444444433211 24444444445555555555555554444432 1233
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CH
Q 004814 419 VTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQP----------DR 488 (729)
Q Consensus 419 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~----------~~ 488 (729)
.++..+...+...|++++|...++++++.. +.+..++..+...|.+.|++++|...++++.+..... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 444445555555555555555555544432 2334445555555555555555555555544431110 13
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHH
Q 004814 489 FAYTTQIAGELKLGDTSEAYRLQE 512 (729)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~l~~ 512 (729)
.++..+..++...|+.++|..++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 444555555555555555554443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-18 Score=175.60 Aligned_cols=263 Identities=13% Similarity=-0.015 Sum_probs=163.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 004814 421 YNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELK 500 (729)
Q Consensus 421 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 500 (729)
+..+...+...|++++|...++++++.. +.+..++..+...+.+.|++++|.+.++++.+... .+..++..+...+..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 4444444444444444444444444432 23344444444444444444444444444444321 133444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 004814 501 LGDTSEAYRLQEEMLAKGFPPDLITYN----------------VLVHGLCKLGSLEEANELLRKMVGDGFIP-DHITYTS 563 (729)
Q Consensus 501 ~g~~~~A~~l~~~~~~~~~~~~~~~~~----------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 563 (729)
.|++++|...++.+.+.. +.+...+. .+.. +...|++++|...++++++..+.. +..++..
T Consensus 145 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 444444444444444432 11111111 2222 337788888888888887764321 4677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRR 643 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 643 (729)
+...+...|++++|...++++.+.. +.+..+|..++..+...|++++|+..++++.+.. +.+...+..++.+|.+.|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 8888888888888888888887764 4567788888888888888888888888887753 2356778888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 644 IDQAYGLFIDMEEEGILPN-----------KYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+++|...++++.+.. +.+ ..+|..++.++...|++++|..++++.+
T Consensus 301 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 888888888887642 112 5678888888888888888888776544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=173.59 Aligned_cols=266 Identities=11% Similarity=-0.021 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+..++..+.+.|++++|...+++++..+|. +..++..++.+|.+.|++++|+..|+++++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG---------------DAEAWQFLGITQAENENEQAAIVALQRCLEL 128 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4556888899999999999999999999888776 4677888999999999999999999999887
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhH----------HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTY----------NTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
.+. +..++..++.+|...|++++|...|+++.+.. +.+...+ ..+...+.+.|++++|.+.|+++.+.
T Consensus 129 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 129 QPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 654 67788888889999999999999999887753 2222222 33467777788888888888887765
Q ss_pred CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004814 273 GCS-PNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATY 351 (729)
Q Consensus 273 ~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 351 (729)
... ++..++..+...+.+.|++++|.+.++++++.. +.+..+|..+...|...|++++|++.|+++.+..+. +..++
T Consensus 207 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 284 (365)
T 4eqf_A 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSR 284 (365)
T ss_dssp SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHH
Confidence 211 156677777777888888888888888877764 335667777777777777777777777777765332 46677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 004814 352 NILIYGLCKWGRVSDARHRFFEMLRKNVI-----------PDIISYNTLLYGYCRSGNIGEAFLLFD 407 (729)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~ 407 (729)
..+...|.+.|++++|.+.|+++++..+. .+...|..+..++...|+.+.+..+..
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777777777777777776653210 024556666666666666665555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-17 Score=169.96 Aligned_cols=275 Identities=11% Similarity=-0.045 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004814 384 ISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGS 463 (729)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (729)
..+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555555555555555555555432 2244455555555555555555555555555442 23445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 464 CKMGNLSMAREFFNEMLRKGLQPDRF-AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEA 542 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 542 (729)
...|++++|+..++++.+.. |+.. .+..+ ......+..+...+...|++++|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHHHH
Confidence 55555555555555554431 1100 00000 01123344557778888888999
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 543 NELLRKMVGDGFI-PDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 543 ~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
...++++++..+. ++..++..+...+...|++++|.+.++++.+.. +.+..+|..++.+|...|++++|+..|+++.+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999888876432 157788888888889999999999999888774 55688888999999999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 622 KGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGI---L--------PNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 622 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
.. +.+..++..++.+|.+.|++++|...++++.+... . .+...|..+..++...|+.+.|....++-
T Consensus 276 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 276 IQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 53 23577888899999999999999999998887320 0 02567888899999999998888876653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-17 Score=166.68 Aligned_cols=378 Identities=12% Similarity=0.089 Sum_probs=125.7
Q ss_pred HCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 004814 220 DNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARG 299 (729)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 299 (729)
+.|+.++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 444455555555554 12235555555555555555555555331 244455555555555555555555
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 300 LIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNV 379 (729)
Q Consensus 300 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 379 (729)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~---------------------------------- 119 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------G---------------------------------- 119 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------C----------------------------------
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------C----------------------------------
Confidence 44444332 2234444455555555555555444442 1
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 380 IPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIM 459 (729)
Q Consensus 380 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 459 (729)
|+..+|+.++..|...|.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..+
T Consensus 120 -pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v 183 (449)
T 1b89_A 120 -PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 183 (449)
T ss_dssp -C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHH
Confidence 33344444444444444455554444433 24444555555555555555555444 144455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 004814 460 VNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLG-- 537 (729)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-- 537 (729)
+.+|...|+++.|......+ ...+.....++..|.+.|.+++|+.+++..+... +....+|+.+...|++-.
T Consensus 184 ~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 184 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 257 (449)
T ss_dssp HHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHH
Confidence 55555555555553332221 1122223344455555555555555555554433 333444555544444431
Q ss_pred CHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCCCChhhHHH
Q 004814 538 SLEEANELLRKMVGDGFIP------DHITYTSIIHASLEMGDLRRGRDLF-------------NNMLRKGLSPTLVTYTV 598 (729)
Q Consensus 538 ~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~~~ 598 (729)
+..+.++.|..-+ +++| +...|..+...|...++++.|.... .+++.+ ..+...|-.
T Consensus 258 k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~k--v~n~elyYk 333 (449)
T 1b89_A 258 KMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYR 333 (449)
T ss_dssp HHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH--CSSTHHHHH
T ss_pred HHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhc--hhHHHHHHH
Confidence 2222222222111 1111 2234555555556666666554432 222211 345556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGN 678 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 678 (729)
.+..|... .+ +++.-+...... +.|. +..+..+.+.|.+.-+..++..+...+ +..+-.++-+.|....+
T Consensus 334 ai~fyl~~-~p-~~l~~ll~~l~~--~ld~---~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed 403 (449)
T 1b89_A 334 AIQFYLEF-KP-LLLNDLLMVLSP--RLDH---TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEED 403 (449)
T ss_dssp HHHHHHHH-CG-GGHHHHHHHHGG--GCCH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc-CH-HHHHHHHHHHHh--ccCc---HHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhh
Confidence 66666521 12 222222222221 1222 455566677777777777776666532 45555667777788888
Q ss_pred HHHHHHHHHH
Q 004814 679 WQEALRLYKE 688 (729)
Q Consensus 679 ~~~A~~~~~~ 688 (729)
++.-+..++.
T Consensus 404 ~~~lr~si~~ 413 (449)
T 1b89_A 404 YQALRTSIDA 413 (449)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7765555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-16 Score=161.94 Aligned_cols=221 Identities=11% Similarity=0.106 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSF 253 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (729)
.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+++...+. .+++.+.+.++.+|
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 35555666666666666666666442 24445555555555566666666655444442 23345555566666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHH
Q 004814 254 CKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEAL 333 (729)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 333 (729)
.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+ ..|..++.++.+.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 66666665555552 244455566666666666666666666544 24555566666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 004814 334 NLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRN 413 (729)
Q Consensus 334 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 413 (729)
+.++++ .++.+|..++.+|+..|+++.|...... +..++.-...++..|.+.|++++|..+++......
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 655555 1455555555666666665555333322 11222223345555555555555555555554432
Q ss_pred CCCCHhhHHHHHHHHHh
Q 004814 414 LVPTVVTYNTLIDGLCR 430 (729)
Q Consensus 414 ~~~~~~~~~~ll~~~~~ 430 (729)
+.....|+-|.-.|++
T Consensus 238 -~ah~~~ftel~il~~k 253 (449)
T 1b89_A 238 -RAHMGMFTELAILYSK 253 (449)
T ss_dssp -TCCHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHh
Confidence 2233444444444433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.4e-17 Score=164.94 Aligned_cols=265 Identities=11% Similarity=-0.031 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
...+..++..+...|++++|...++++++.+|. +...+..++.+|.+.|++++|...|+++.+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 85 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---------------REEAWRSLGLTQAENEKDGLAIIALNHARMLD 85 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345667778888889999999999888887665 46677788888888999999999999888875
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHH
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM--------------LD-SFCKEGEMQEALELLWE 268 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~ 268 (729)
+. +..++..+...+...|++++|.+.|+++.+.. +.+...+..+ .. .+...|++++|.+.+++
T Consensus 86 ~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 86 PK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 44 67778888888888888888888888888764 3334444433 22 35566677777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 004814 269 MQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTL 348 (729)
Q Consensus 269 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 348 (729)
+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+..+. +.
T Consensus 164 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 240 (327)
T 3cv0_A 164 ALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YV 240 (327)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CH
Confidence 76652 3356666677777777777777777777776654 234566666666777777777777777666654322 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 349 ATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP-----------DIISYNTLLYGYCRSGNIGEAFLLFDE 408 (729)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~ 408 (729)
..+..+...+.+.|++++|.+.++++....+.. +...|..+..++.+.|+.++|..++++
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 566666666666666666666666665543211 345556666666666666666665543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-15 Score=164.55 Aligned_cols=298 Identities=11% Similarity=-0.073 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHH
Q 004814 328 LLVEALNLEEEMVTRGVAPTLATYNILIYG---LCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCR----SGNIG 400 (729)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 400 (729)
++++|++.|++..+..+. +...+..+... +...++.++|++.+++.++.++ .+...+..+...+.. .|+++
T Consensus 153 ~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------C
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHH
Confidence 344555555554443221 22333322222 2233444555555555544332 233333333333322 34455
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 401 EAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEML 480 (729)
Q Consensus 401 ~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (729)
+|.+.+++..... +.+..++..+...+...|++++|...++++++.. +.+..++..+...|...+....+...
T Consensus 231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~----- 303 (472)
T 4g1t_A 231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE----- 303 (472)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH-----
Confidence 5666665554432 2244455555666666666666666666665543 33444555444444321111000000
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-
Q 004814 481 RKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHI- 559 (729)
Q Consensus 481 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~- 559 (729)
..........+..++|...++...+.+ +.+...+..+...+...|++++|.+.|++.++....+...
T Consensus 304 -----------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 304 -----------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred -----------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 000000111122445555555555542 4445556666666666666666666666666553332211
Q ss_pred -HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004814 560 -TYTSIIH-ASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALING 637 (729)
Q Consensus 560 -~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 637 (729)
.+..+.. .....|+.++|+..+++.++. .|+..... +....+.+++++..+.. +.+..+|..++.+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFL 439 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 1222222 233556667777777666664 23322211 11233344455554432 2345567777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 004814 638 LCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g 658 (729)
|...|++++|++.|++.++.|
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHCC-------------
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 777777777777777776643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-16 Score=161.89 Aligned_cols=279 Identities=10% Similarity=-0.048 Sum_probs=183.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004814 384 ISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGS 463 (729)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (729)
..+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 344555555666666666666666655542 2244555555556666666666666666665543 33455555555566
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHHH
Q 004814 464 CKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVL-VH-GLCKLGSLEE 541 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~ 541 (729)
...|++++|.+.++++.+.... +...+..+... .++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 6666666666666665554211 11111111000 0011111112 22 3667788889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 542 ANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 542 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
|...++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+..++..++..+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999988887653 367788888888999999999999999888764 55678888899999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 622 KGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILP-----------NKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 622 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.. +.+...+..++.+|...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++.+
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 63 3367788899999999999999999999988753111 36688889999999999999999887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-15 Score=164.40 Aligned_cols=395 Identities=10% Similarity=-0.057 Sum_probs=256.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
.+....|+.++.++...|++++|+..++++++..+.. ...........+|..++.+|...|++++|...++++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~------~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE------HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------SGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc------CccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4456789999999999999999999999998753321 0000111245678899999999999999999999887
Q ss_pred HCC-----C-CC-ChHhHHHHHHHHHH--CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHH
Q 004814 201 RNG-----L-LP-DVKNCNRIIKVLRD--NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSF---CKEGEMQEALELLWE 268 (729)
Q Consensus 201 ~~~-----~-~~-~~~~~~~ll~~l~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~ 268 (729)
+.. . .+ ...++..+..++.+ .+++++|+..|++..+.. |.+...+..+..++ ...++.++|++.+++
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 531 1 11 24456666656655 456899999999998865 45566666666554 346778889999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 004814 269 MQGRGCSPNGVTYNVLITGFSR----NGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGV 344 (729)
Q Consensus 269 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (729)
..+.. +.+...+..+...+.. .|+.++|.+.+++..+.. +.+..++..+...|...|++++|.+.+++..+..+
T Consensus 201 al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 201 AIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278 (472)
T ss_dssp HHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 87752 3356666666655544 467889999999988775 44778889999999999999999999999988644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 004814 345 APTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTL 424 (729)
Q Consensus 345 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~l 424 (729)
. +..++..+...|...+....+.. ...........+..++|...+++..+.+ +.+..++..+
T Consensus 279 ~-~~~~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 340 (472)
T 4g1t_A 279 N-NAYLHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSIL 340 (472)
T ss_dssp T-CHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHH
T ss_pred C-hHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhH
Confidence 3 56667777666643221111100 0001111112234677888888877654 3356678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 004814 425 IDGLCRYGDLEVAQQLKENMINQGILPDV--ITYTIMVN-GSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKL 501 (729)
Q Consensus 425 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 501 (729)
...+...|++++|...|++.++....+.. ..+..+.. .+...|+.++|+..|++.++. .|+......
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~-------- 410 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK-------- 410 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH--------
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH--------
Confidence 88999999999999999998886533322 12233332 234678999999999999886 344322222
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004814 502 GDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGF 554 (729)
Q Consensus 502 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 554 (729)
....+.++++..++.+ |.+..+|..+...|...|++++|++.|++.++.+.
T Consensus 411 -~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 411 -MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp -HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred -HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2234455566655553 67788999999999999999999999999988653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-16 Score=156.59 Aligned_cols=268 Identities=11% Similarity=0.035 Sum_probs=145.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 004814 429 CRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAY 508 (729)
Q Consensus 429 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 508 (729)
...|++..|+...+........+.......+.++|...|+++.|+..++.. -.|+..++..+...+...++.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344555555555544332211111123344455555555555555544321 1334445555555555555666666
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 509 RLQEEMLAKGF-PPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK 587 (729)
Q Consensus 509 ~l~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (729)
+.+++++..+. |.+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 66666555442 33455555555666666666666666655 235556666666666666666666666666655
Q ss_pred CCCCChhhH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004814 588 GLSPTLVTY---TVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKY 664 (729)
Q Consensus 588 ~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (729)
. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|...++++++.. +.+..
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 3 332211 11122233346677777777776665 23456666666667777777777777777766653 44555
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc
Q 004814 665 TYTILINENCNAGNWQE-ALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH 716 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~ 716 (729)
++..++..+...|+.++ +.+++++++ .+.|+.... .+...+.+.++
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~--~~~P~~~~~----~d~~~~~~~fd 282 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLK--DAHRSHPFI----KEYRAKENDFD 282 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH--HHCTTCHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH--HhCCCChHH----HHHHHHHHHHH
Confidence 66666666666666654 456666666 455654432 22344555554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-15 Score=151.82 Aligned_cols=275 Identities=14% Similarity=0.066 Sum_probs=175.3
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 392 GYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSM 471 (729)
Q Consensus 392 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (729)
-....|++.+|+..++................+.++|...|+++.|...++. .-+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445666777766666554432111122334556667777777776665433 124556666666777777777777
Q ss_pred HHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 472 AREFFNEMLRKGLQPD-RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMV 550 (729)
Q Consensus 472 A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 550 (729)
|++.++++...+..|+ ...+..+...+.+.|++++|++.++. +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777766554343 34445555667777777777777765 4567777777778888888888888888877
Q ss_pred hCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004814 551 GDGFIPDHITY---TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN 627 (729)
Q Consensus 551 ~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 627 (729)
+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.++.++.+.|++++|...++++.+.. +-+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 753 332211 122333444578888888888888763 6677788888888888888888888888887753 236
Q ss_pred HHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 628 VITYNALINGLCRLRRIDQ-AYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRL 685 (729)
Q Consensus 628 ~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 685 (729)
..++..++..+...|+.++ +.++++++.+. .|+.... .+...+.+.++++..-
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHHHHHHHH
Confidence 6777888888888888765 46788888774 3443322 2234455555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=181.56 Aligned_cols=119 Identities=14% Similarity=0.108 Sum_probs=80.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHH
Q 004814 242 SIVTYNTMLDSFCKEGEMQEALELLWEMQG---RGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNP 318 (729)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 318 (729)
-..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345677777777777777777777766543 35677777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 319 IICGYSEKGLL-VEALNLEEEMVTRGVAPTLATYNILIYGLCK 360 (729)
Q Consensus 319 li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 360 (729)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 77777766663 5666677777766766676666666654443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=182.37 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=128.4
Q ss_pred CChHhHHHHHHHHHHCCChhHHHHHHHHHHh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004814 206 PDVKNCNRIIKVLRDNGFSVKAREVYRMMGE---FGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYN 282 (729)
Q Consensus 206 ~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 282 (729)
.-..+||+++.+|++.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||++|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3467899999999999999999999988764 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 004814 283 VLITGFSRNGE-LEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPT------LATYNILI 355 (729)
Q Consensus 283 ~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li 355 (729)
+||.++|+.|+ .++|.++|++|.+.|+.||..+|++++.+..+.+ .++..+++ ..+..|+ +.+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999998 5789999999999999999999999997666543 33333333 2344443 44555666
Q ss_pred HHHHhcCC
Q 004814 356 YGLCKWGR 363 (729)
Q Consensus 356 ~~~~~~g~ 363 (729)
+.|.+.+.
T Consensus 280 dl~s~d~~ 287 (1134)
T 3spa_A 280 DVYAKDGR 287 (1134)
T ss_dssp HHHCCCSC
T ss_pred HHHccCCC
Confidence 76666553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-15 Score=159.43 Aligned_cols=346 Identities=12% Similarity=-0.004 Sum_probs=194.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCCh---hHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFS---VKAREVYRMMGEFGIKPSIVTYNTMLDSFCK 255 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (729)
++..+.+.|++++|++.|+++.+.| +..++..+...|...|+. ++|..+|++..+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5666778888899999999888865 445556667777777777 8888888888753 56667777775555
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHhCCCccChhhHHHHHHHHHhCC
Q 004814 256 EG-----EMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQ---ARGLIRDMLKLGLKVSAHSYNPIICGYSEKG 327 (729)
Q Consensus 256 ~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 327 (729)
.| ++++|...|++..+.|.. ..+..|...|...+..++ +.+.+......| +...+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55 678888888888876532 256667777766654333 344444444433 4556667777777766
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc----CCHH
Q 004814 328 LLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWG---RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRS----GNIG 400 (729)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~ 400 (729)
.++++.+......+.-...++..+..|...|.+.| +.++|++.|++..+.|. ++...+..+...|... ++.+
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHH
Confidence 44444333222222111123336667777777777 77777777777777765 5555555566666443 5777
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 004814 401 EAFLLFDELRSRNLVPTVVTYNTLIDG-L--CRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMG-----NLSMA 472 (729)
Q Consensus 401 ~A~~l~~~m~~~~~~~~~~~~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A 472 (729)
+|+..|++.. .| +...+..+... + ...++.++|..+|++..+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777777766 33 44555555555 3 34667777777777777665 5566666666665 44 67777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 004814 473 REFFNEMLRKGLQPDRFAYTTQIAGELK----LGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCK----LGSLEEANE 544 (729)
Q Consensus 473 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 544 (729)
.+.|++.. . -+......+...|.. ..+.++|...++...+.| +......+...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 77776666 2 244555555555544 336666666666666554 23334444444443 235666666
Q ss_pred HHHHHHhCC
Q 004814 545 LLRKMVGDG 553 (729)
Q Consensus 545 ~~~~~~~~~ 553 (729)
+|+...+.|
T Consensus 380 ~~~~A~~~g 388 (452)
T 3e4b_A 380 FSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHCC
Confidence 666666554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-15 Score=143.59 Aligned_cols=240 Identities=13% Similarity=0.080 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 004814 454 ITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKG--FPPD----LITYN 527 (729)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~----~~~~~ 527 (729)
..+..+...+...|++++|+..++++.+.. .+...+..+..++...|++++|...++...+.. ..++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344455555555555555555555555554 345555555555555555555555555554431 0111 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG 607 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 607 (729)
.+...+...|++++|...++++.+.. |+. ..+...|++++|...++++.... +.+...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 77888888888888888888887753 342 34566678888999988888764 445677888888899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 608 RLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYK 687 (729)
Q Consensus 608 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 687 (729)
++++|...++++.+.. +.+...+..++.+|...|++++|...++++.+.. +.+...|..++.++.+.|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999988863 3367788899999999999999999999998864 5567788899999999999999999999
Q ss_pred HHHHCC----CCCCHHHHHHHHHh
Q 004814 688 EMLDRE----IEPDYCTHSALLLK 707 (729)
Q Consensus 688 ~m~~~~----~~pd~~~~~~ll~~ 707 (729)
++++.. ..|+.......+..
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhChhhcCCCchHHHHHHHHH
Confidence 988321 22666555444343
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-15 Score=142.34 Aligned_cols=199 Identities=14% Similarity=-0.027 Sum_probs=124.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+++...+..++.++.+.|++++|...++++++.+|. +...+..++.+|.+.|++++|+..|++++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ---------------DPEALYWLARTQLKLGLVNPALENGKTLV 66 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677777788888888888888888888777766 46677777777888888888888888877
Q ss_pred HCCCCCChHhHHHHHHHHHHC-----------CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDN-----------GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEM 269 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 269 (729)
+..+. +...+..+..++.+. |++++|+..|++.++.. |.+..++..+..++...|++++|+..|++.
T Consensus 67 ~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 67 ARTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCC-cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 76644 566677777777777 66666666666666543 344556666666666666666666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004814 270 QGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEM 339 (729)
Q Consensus 270 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (729)
.+.. .+...+..+...+...|++++|...|+++++.. +.+...+..+...+...|++++|.+.+++.
T Consensus 145 l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 145 LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6554 455666666666666666666666666666553 234555556666666666666666655543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-15 Score=156.48 Aligned_cols=378 Identities=10% Similarity=0.017 Sum_probs=185.9
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004814 214 IIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM---QEALELLWEMQGRGCSPNGVTYNVLITGFSR 290 (729)
Q Consensus 214 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 290 (729)
+...+.+.|++++|.++|++..+.| +..++..|...|...|+. ++|...|++..+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5556666777777777777776644 344445555556666666 6777777666543 34444555554444
Q ss_pred CC-----CHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 291 NG-----ELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVE---ALNLEEEMVTRGVAPTLATYNILIYGLCKWG 362 (729)
Q Consensus 291 ~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 362 (729)
.| +.++|...|++..+.| +...+..|...|...+..++ +.+.+......| +...+..|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 43 5566666666666654 22355555555554433222 222222222222 2223333334443333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC---CHHHHHH
Q 004814 363 RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYG---DLEVAQQ 439 (729)
Q Consensus 363 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~ 439 (729)
.++++. +++..+++..... ++..+..|...|...| +.++|.+
T Consensus 156 ~~~~~~-------------------------------~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 156 TYDQHL-------------------------------DDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp CGGGGH-------------------------------HHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcccCH-------------------------------HHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHH
Confidence 322222 2222222222221 2224555555555555 5566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHH
Q 004814 440 LKENMINQGILPDVITYTIMVNGSCKM----GNLSMAREFFNEMLRKGLQPDRFAYTTQIAG-E--LKLGDTSEAYRLQE 512 (729)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~ 512 (729)
.|++..+.| +++...+..+...|... ++.++|.+.|++.. . -+...+..+... + ...+++++|+..++
T Consensus 201 ~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 201 QMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 666666655 33444444455555433 46666666666655 2 233444444444 2 34666667777776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 004814 513 EMLAKGFPPDLITYNVLVHGLCKLG-----SLEEANELLRKMVGDGFIPDHITYTSIIHASLE----MGDLRRGRDLFNN 583 (729)
Q Consensus 513 ~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 583 (729)
+..+.| +...+..+...|. .| ++++|.+.|++.. .| +......+...|.. ..++++|...|++
T Consensus 276 ~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 276 NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 666655 5556666666665 34 6777777777766 32 45556666665554 3377777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 584 MLRKGLSPTLVTYTVLIHAHAA----RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
..+.| +......|...|.. ..+.++|...|+...+.|.. +.......+......++.++|..+.++..+
T Consensus 348 Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 348 AARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 77665 34455566666653 35777888888877776532 222222222222233456667777666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=137.35 Aligned_cols=197 Identities=17% Similarity=0.034 Sum_probs=111.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004814 488 RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHA 567 (729)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 567 (729)
...+..+...+.+.|++++|+..++..++.. |.+...+..+...+.+.|++++|...+++.++..+ .+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 3344444444455555555555555554442 44455555555555555555555555555555432 244455555555
Q ss_pred HHhc-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 568 SLEM-----------GDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALIN 636 (729)
Q Consensus 568 ~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 636 (729)
+... |++++|...+++.++.. |.+...+..+..+|...|++++|+..|+++.+.. .+...+..++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 5555 77777777777776653 4456667777777777777777777777777665 46667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 637 GLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+|...|++++|+..++++.+.. +.+...+..+..++.+.|++++|+..+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777653 4455666777777777777777777776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-14 Score=145.18 Aligned_cols=249 Identities=8% Similarity=-0.017 Sum_probs=204.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSM-VEQCLLVFNKMLR 201 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 201 (729)
+..+|..+..++.+.|++++|+..+++++..+|. +..+|..+..+|.+.|+ +++|+..|+++++
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---------------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA---------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc---------------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 4577888888999999999999999999999887 57788999999999997 9999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTY 281 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 281 (729)
..+. +...|+.+..++...|++++|+..|+++++.. +.+..+|..+..++.+.|++++|+..|+++.+.. +-+...|
T Consensus 161 l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~ 237 (382)
T 2h6f_A 161 EQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVW 237 (382)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHH
Confidence 8766 78889999999999999999999999999876 6688899999999999999999999999999873 3477889
Q ss_pred HHHHHHHHh-CCCHHHH-----HHHHHHHHhCCCccChhhHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 282 NVLITGFSR-NGELEQA-----RGLIRDMLKLGLKVSAHSYNPIICGYSEKG--LLVEALNLEEEMVTRGVAPTLATYNI 353 (729)
Q Consensus 282 ~~li~~~~~-~g~~~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ 353 (729)
+.+...+.+ .|..++| .+.+++.++.. +-+..+|+.+...+...| ++++|++.+.++ +.. ..+...+..
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~ 314 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHH
Confidence 999999998 6665777 48888888765 336778888888888888 588888888887 332 336677888
Q ss_pred HHHHHHhcC---------CHHHHHHHHHHH-HHCCCCCCHhHHHHHHHHH
Q 004814 354 LIYGLCKWG---------RVSDARHRFFEM-LRKNVIPDIISYNTLLYGY 393 (729)
Q Consensus 354 li~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~ 393 (729)
++..|.+.| ..++|+++|+++ .+.++ .....|..+...+
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l 363 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHH
Confidence 888888764 257888888888 55442 3344555555444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-14 Score=138.00 Aligned_cols=225 Identities=13% Similarity=0.051 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCC--CC----hhhH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIK--PS----IVTY 246 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 246 (729)
...+..++..|...|++++|+..|+++++.. .+...+..+..++...|++++|...|+++.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567778888889999999999999988877 57788888888888999999999888888764311 11 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhC
Q 004814 247 NTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEK 326 (729)
Q Consensus 247 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 326 (729)
..+...+.+.|++++|...|+++.+. .|+. ..+.+.|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88888888888888888888888775 3442 23455567777777777777653 23455666667777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 004814 327 GLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLF 406 (729)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 406 (729)
|++++|.+.++++.+..+. +...+..+...+.+.|++++|.+.+++.++..+ .+...|..+...+...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777777777776665332 456666666666666666666666666665443 34555666666666666666666666
Q ss_pred HHHhh
Q 004814 407 DELRS 411 (729)
Q Consensus 407 ~~m~~ 411 (729)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-14 Score=140.00 Aligned_cols=248 Identities=14% Similarity=0.002 Sum_probs=161.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 004814 456 YTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPP--DLITYNVLVHGL 533 (729)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~~~ 533 (729)
+......+...|++++|+..++++.+.... +...+..+..++...|++++|+..++..++....+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334455556666666666666666655321 33355555566666666666666666666532111 123466777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 004814 534 CKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAF 613 (729)
Q Consensus 534 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 613 (729)
...|++++|.+.++++.+..+. +..++..+...+...|++++|.+.+++..+.. +.+...|..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777765432 55677777788888888888888888777663 455666777763444455888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 004814 614 MYFSEMQVKGIRPNVITYNALINGLCRLRR---IDQAYGLFIDMEEEG-ILPN------KYTYTILINENCNAGNWQEAL 683 (729)
Q Consensus 614 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A~ 683 (729)
+.++++.+.. +.+...+..+..++...|+ .++|...++++.+.. -.|+ ..+|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888887753 2246677777777777777 777888888877631 1133 146777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHhhh
Q 004814 684 RLYKEMLDREIEPDYCTHSALLLKQL 709 (729)
Q Consensus 684 ~~~~~m~~~~~~pd~~~~~~ll~~~l 709 (729)
+.+++++ .+.|+.......+....
T Consensus 242 ~~~~~al--~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 242 AAWKNIL--ALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHH--HHCTTCHHHHHHHC---
T ss_pred HHHHHHH--hcCccHHHHHHHhhhhh
Confidence 8888888 56676655555434333
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=8.5e-14 Score=143.44 Aligned_cols=250 Identities=10% Similarity=0.028 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 453 VITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGD-TSEAYRLQEEMLAKGFPPDLITYNVLVH 531 (729)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~~~~~~~~~~~~li~ 531 (729)
...|..+...+.+.|++++|++.++++++.... +...|..+...+...|+ +++|+..++++++.. |.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 345555556666666666666666666665322 35555666666666664 677777776666653 556777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-cCCHH
Q 004814 532 GLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAA-RGRLE 610 (729)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 610 (729)
++...|++++|+..|+++++..+. +...|..+..++.+.|++++|++.++++++.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 777778888888888887776533 66777777777888888888888888887765 4567778888777777 55546
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 004814 611 LA-----FMYFSEMQVKGIRPNVITYNALINGLCRLR--RIDQAYGLFIDMEEEGILPNKYTYTILINENCNAG------ 677 (729)
Q Consensus 611 ~A-----~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g------ 677 (729)
+| +..++++++... -+...|+.+..++.+.| ++++|++.+.++ +. -+.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 477777777532 25667777777777777 578888888777 43 2445667778888887764
Q ss_pred ---CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHhhhcc
Q 004814 678 ---NWQEALRLYKEM-LDREIEPDYCTHSALLLKQLDK 711 (729)
Q Consensus 678 ---~~~~A~~~~~~m-~~~~~~pd~~~~~~ll~~~l~~ 711 (729)
.+++|+++|+++ + .+.|+...+...++..|..
T Consensus 330 ~~~~~~~A~~~~~~l~~--~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAK--EKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--TTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH--HhCchhHHHHHHHHHHHHH
Confidence 258888888888 6 6777655444443555543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-12 Score=129.45 Aligned_cols=222 Identities=12% Similarity=-0.022 Sum_probs=147.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004814 452 DVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELK----LGDTSEAYRLQEEMLAKGFPPDLITYN 527 (729)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~ 527 (729)
+..++..+...+...|++++|.+.|++..+. .+...+..+...+.. .+++++|+..+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455555566666666666666666666652 234455555556666 666666666666666654 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004814 528 VLVHGLCK----LGSLEEANELLRKMVGDGFIPDHITYTSIIHASLE----MGDLRRGRDLFNNMLRKGLSPTLVTYTVL 599 (729)
Q Consensus 528 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 599 (729)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 677777777777776653 55666666667776 777777777777777654 45566666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 600 IHAHAA----RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCR----LRRIDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 600 ~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 667766 777777777777777653 45666677777777 777777777777777754 2556667777
Q ss_pred HHHh----cCCHHHHHHHHHHHHH
Q 004814 672 ENCN----AGNWQEALRLYKEMLD 691 (729)
Q Consensus 672 ~~~~----~g~~~~A~~~~~~m~~ 691 (729)
.|.. .|++++|++.|+++++
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 7777 7777777777777773
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-14 Score=141.37 Aligned_cols=251 Identities=12% Similarity=-0.020 Sum_probs=153.0
Q ss_pred HhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 004814 135 IESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRI 214 (729)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (729)
...|++++|...++++++..+. +.+.+..++..++..|...|++++|+..|+++++..+. +..++..+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l 83 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRAL-----------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYL 83 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccc-----------cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 3446677777777777665211 00124566777778888888888888888888776544 56777777
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 004814 215 IKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGEL 294 (729)
Q Consensus 215 l~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 294 (729)
+.++...|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|+++.+. .|+.......+..+...|++
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~ 160 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDE 160 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCH
Confidence 777888888888888888777754 445677777777788888888888888777764 33433333444444556777
Q ss_pred HHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 295 EQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP---TLATYNILIYGLCKWGRVSDARHRF 371 (729)
Q Consensus 295 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~ 371 (729)
++|...+++..... +++...+ .++..+...++.++|.+.+++........ +...+..+...+.+.|++++|...|
T Consensus 161 ~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 161 KQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777666553 2233333 35566666666777777776665432110 1345555666666666666666666
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 004814 372 FEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLF 406 (729)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 406 (729)
++.+... |+. +.....++...|++++|++.+
T Consensus 239 ~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 239 KLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 6665543 211 122233444555555555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-11 Score=134.78 Aligned_cols=454 Identities=9% Similarity=-0.014 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---HHHHHHH
Q 004814 189 VEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE---MQEALEL 265 (729)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 265 (729)
..+-+..|++.+..++. |..+|..++..+.+.+.++.+..+|++++..- |.....|...+..-.+.|+ ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 34455666777776665 88888888888888888888888888888753 5667778888888888888 8888888
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHh-CCC-cc-ChhhHHHHHHHHHh--------
Q 004814 266 LWEMQGRG-CSPNGVTYNVLITGFSRNGEL--------EQARGLIRDMLK-LGL-KV-SAHSYNPIICGYSE-------- 325 (729)
Q Consensus 266 ~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~~-------- 325 (729)
|++..... ..|++..|...+....+.++. +...++|+..+. .|. .+ +...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 88888762 137777777777655554443 334467776664 354 33 34577777765432
Q ss_pred -CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 004814 326 -KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFL 404 (729)
Q Consensus 326 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 404 (729)
.++++.+.++|+.++......-..+|......--..+. ..+.+++.+. ..+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHH
Confidence 33456677777777753111111223221111100011 0111111110 112223333
Q ss_pred HHHHHhh--CCC----C-----------C--C------HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCC
Q 004814 405 LFDELRS--RNL----V-----------P--T------VVTYNTLIDGLCRYG-------DLEVAQQLKENMINQGILPD 452 (729)
Q Consensus 405 l~~~m~~--~~~----~-----------~--~------~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~~~ 452 (729)
.+.++.. .++ + | + ...|...+.---..+ ..+.+..+|++++.. ++-+
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCC
Confidence 3332211 000 0 0 0 012222222211111 123445667777665 3556
Q ss_pred HHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCC
Q 004814 453 VITYTIMVNGSCKMGNLSMAR-EFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKG----------FPP 521 (729)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~----------~~~ 521 (729)
...|...+..+.+.|+.++|. ++|++.... ++.+...+...+....+.|+++.|..+|+.++... .|.
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 777777777777778777785 888887764 22344455666777777888888888888776531 121
Q ss_pred -----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 004814 522 -----------DLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEM-GDLRRGRDLFNNMLRKGL 589 (729)
Q Consensus 522 -----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 589 (729)
...+|...+....+.|..+.|..+|.++++.........|...+..-.+. ++.+.|.++|+..++. .
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 12357777777777788888888888887751111223333333333333 4478888888888776 3
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004814 590 SPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP--NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYT 667 (729)
Q Consensus 590 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 667 (729)
+.+...|...++.....|+.+.|..+|+++......+ ....|...+..-.+.|+.+.+.++.+++.+. .|+.....
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~ 578 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLE 578 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHH
Confidence 4566667777777777888888888888887763221 2346777777777888888888888888875 34433444
Q ss_pred HHHH
Q 004814 668 ILIN 671 (729)
Q Consensus 668 ~l~~ 671 (729)
.+++
T Consensus 579 ~f~~ 582 (679)
T 4e6h_A 579 EFTN 582 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-13 Score=136.98 Aligned_cols=228 Identities=11% Similarity=-0.004 Sum_probs=98.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHH
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIV----TYNTMLDSFC 254 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~ 254 (729)
.+..|...|++++|+..|+++++..+. +...+..+..++...|++++|+..|+++.+.+ ++.. +|..+...+.
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHH
Confidence 334444444444444444444443322 23344444444444444444444444444421 1111 2444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
..|++++|.+.|++..+.. +.+..++..+...+...|++++|.+.+++.++.. +.+..++..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444431 1233344444444444444444444444444432 2233344444412222235555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HhHHHHHHHHHHHcCCHHHHHH
Q 004814 335 LEEEMVTRGVAPTLATYNILIYGLCKWGR---VSDARHRFFEMLRKN-VIPD------IISYNTLLYGYCRSGNIGEAFL 404 (729)
Q Consensus 335 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~~ 404 (729)
.|+++.+..+. +...+..+...+...|+ +++|...+++..+.. ..|+ ..+|..+...|...|++++|.+
T Consensus 164 ~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55544443221 23444444444444444 444554444444321 0011 1344455555555555555555
Q ss_pred HHHHHhhC
Q 004814 405 LFDELRSR 412 (729)
Q Consensus 405 l~~~m~~~ 412 (729)
.+++..+.
T Consensus 243 ~~~~al~~ 250 (272)
T 3u4t_A 243 AWKNILAL 250 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-12 Score=127.96 Aligned_cols=222 Identities=11% Similarity=-0.001 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHc----CCCHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTK----KSMVEQCLLVFNK 198 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 198 (729)
++.++..+...+...|++++|...|+++++.+ +...+..+...|.. .|++++|+..|++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 67 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAK 67 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH
Confidence 44555555555555555555555555555421 12344445555555 5555555555555
Q ss_pred HHHCCCCCChHhHHHHHHHHHH----CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 004814 199 MLRNGLLPDVKNCNRIIKVLRD----NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK----EGEMQEALELLWEMQ 270 (729)
Q Consensus 199 ~~~~~~~~~~~~~~~ll~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 270 (729)
..+.+ +..++..+...+.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|...|++..
T Consensus 68 a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 68 ACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 55543 44455555555555 555555555555555532 44455555555555 555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHC
Q 004814 271 GRGCSPNGVTYNVLITGFSR----NGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE----KGLLVEALNLEEEMVTR 342 (729)
Q Consensus 271 ~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 342 (729)
+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|++.+++..+.
T Consensus 142 ~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 142 DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 443 33444444444444 455555555555555443 23444444444444 45555555555544443
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 004814 343 GVAPTLATYNILIYGLCK----WGRVSDARHRFFEMLR 376 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 376 (729)
+ +...+..+...|.+ .+++++|.+.|++..+
T Consensus 216 ~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 216 E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 2 13334444444444 4444444444444444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-14 Score=139.85 Aligned_cols=246 Identities=11% Similarity=-0.007 Sum_probs=196.2
Q ss_pred CChHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHH
Q 004814 102 EKPRIALRFFRWVETQPGV--KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLL 179 (729)
Q Consensus 102 ~~~~~al~~f~~~~~~~~~--~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 179 (729)
++++.|+..|+.+...... +.+..++..++.++...|++++|...+++++..+|. +..++..+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~l 83 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---------------MPEVFNYL 83 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------CHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---------------cHHHHHHH
Confidence 5688999999988765221 236788999999999999999999999999998776 46788899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM 259 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (729)
+.+|...|++++|+..|+++++..+. +..++..+..++.+.|++++|...|+++.+.. |+.......+..+...|++
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 160 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDE 160 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCH
Confidence 99999999999999999999997654 67889999999999999999999999998864 4444445555666778999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc---cChhhHHHHHHHHHhCCCHHHHHHHH
Q 004814 260 QEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLK---VSAHSYNPIICGYSEKGLLVEALNLE 336 (729)
Q Consensus 260 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (729)
++|...+++.... .+++...+. ++..+...++.++|.+.++++.+.... .+..++..+...|...|++++|.+.|
T Consensus 161 ~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 161 KQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999888775 244444444 677788888999999999998765321 12578899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 337 EEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRF 371 (729)
Q Consensus 337 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 371 (729)
+++....+. + +......+...|++++|++.+
T Consensus 239 ~~al~~~p~-~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 239 KLAVANNVH-N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTTCCT-T---CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhCCch-h---HHHHHHHHHHHHHHHhhHHHH
Confidence 999986422 3 233455677888888888765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-11 Score=132.27 Aligned_cols=443 Identities=8% Similarity=-0.016 Sum_probs=245.5
Q ss_pred ChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 004814 139 LLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVL 218 (729)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l 218 (729)
...+-...+++.+..+|. +...|..++..+.+.+.++.+..+|++++..-+. ....|...+..-
T Consensus 47 ~~~d~i~~lE~~l~~np~---------------d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-~~~lW~~Yi~~E 110 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT---------------DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-MANIWCMRLSLE 110 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC---------------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 345566778888888876 6888999999999999999999999999987443 677788888888
Q ss_pred HHCCC---hhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHH
Q 004814 219 RDNGF---SVKAREVYRMMGEFG-IKPSIVTYNTMLDSFCKEGEM--------QEALELLWEMQG-RGC-SPN-GVTYNV 283 (729)
Q Consensus 219 ~~~g~---~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~ 283 (729)
.+.|. ++.+..+|++.+... .+|++..|...+....+.++. +...++|+.... .|. .++ ...|..
T Consensus 111 ~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~ 190 (679)
T 4e6h_A 111 FDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNE 190 (679)
T ss_dssp HTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred HhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 88898 999999999999864 138888999888877666553 334578877654 455 554 467877
Q ss_pred HHHHHH---------hCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 284 LITGFS---------RNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNIL 354 (729)
Q Consensus 284 li~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 354 (729)
.+.... ..++++.++.+|++++.........+|......--..+.. .+.+++.+
T Consensus 191 Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~-~a~~~~~e---------------- 253 (679)
T 4e6h_A 191 YLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQL-TARRHIGE---------------- 253 (679)
T ss_dssp HHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTT-THHHHHHH----------------
T ss_pred HHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcc-hHHHHHHH----------------
Confidence 776543 2345788999999998642221123332222111110100 01111100
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--CCC----C-----------C--C------HhHHHHHHHHHHHcC-------CHHHH
Q 004814 355 IYGLCKWGRVSDARHRFFEMLR--KNV----I-----------P--D------IISYNTLLYGYCRSG-------NIGEA 402 (729)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~~~~--~~~----~-----------~--~------~~~~~~li~~~~~~g-------~~~~A 402 (729)
...+++.|...+.++.. .++ + | + ...|...+..--..+ ..+.+
T Consensus 254 -----~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv 328 (679)
T 4e6h_A 254 -----LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARM 328 (679)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHH
Confidence 00112222222222110 000 0 0 0 122333333222221 01233
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 403 FLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQ-QLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLR 481 (729)
Q Consensus 403 ~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (729)
..+|++.... .+-+...|...+..+...|+.++|. +++++.+.. ++.+...|...+....+.|++++|.++|+++++
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455555443 2224455555555555556655564 666666553 244455555555555666666666666666554
Q ss_pred CCC---------CCC------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH
Q 004814 482 KGL---------QPD------------RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLG-SL 539 (729)
Q Consensus 482 ~g~---------~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~ 539 (729)
... .|+ ...|...+....+.|..+.|..+|....+.-.......|...+..-.+.+ +.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 210 021 22455555555566666666666666665410112223332222222333 36
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHH
Q 004814 540 EEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSP--TLVTYTVLIHAHAARGRLELAFMYFS 617 (729)
Q Consensus 540 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (729)
+.|..+|+..++.- ..+...+...+......|+.+.|..+|+..+....++ ....|...+..-.+.|+.+.+..+.+
T Consensus 487 e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666542 2244455555665566666666666666666553111 23456666665566666666766666
Q ss_pred HHHHC
Q 004814 618 EMQVK 622 (729)
Q Consensus 618 ~~~~~ 622 (729)
++.+.
T Consensus 566 R~~~~ 570 (679)
T 4e6h_A 566 RFFEK 570 (679)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-13 Score=130.46 Aligned_cols=202 Identities=14% Similarity=0.018 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
..++..++..|...|++++|+..|+++++..+. +...+..+...+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 566777788888888888888888888876543 56677777788888888888888888877654 4466777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHH
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSP-NGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVE 331 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 331 (729)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888887777632233 34566667777777777777777777777654 2345666667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 332 ALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKN 378 (729)
Q Consensus 332 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 378 (729)
|.+.++++.+... .+...+..+...+.+.|+.++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777777665433 245556666666666677777766666666543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-13 Score=129.68 Aligned_cols=202 Identities=10% Similarity=-0.071 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
...|..++.++...|++++|...+++++..+|. +..++..++.+|.+.|++++|++.|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---------------SADAHAALAVVFQTEMEPKLADEEYRKALASD 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 567788888999999999999999999988765 46788899999999999999999999999876
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKP-SIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYN 282 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 282 (729)
+. +...+..+...+...|++++|.+.|+++.+.+..| +...+..+...+.+.|++++|.+.|+++.+.. +.+...+.
T Consensus 102 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 179 (252)
T 2ho1_A 102 SR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVAL 179 (252)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred cC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHH
Confidence 54 77888899999999999999999999998832233 56788999999999999999999999998863 34678899
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 004814 283 VLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRG 343 (729)
Q Consensus 283 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (729)
.+...+...|++++|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+..
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999999998865 3577888999999999999999999999998864
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.4e-14 Score=134.62 Aligned_cols=205 Identities=16% Similarity=0.156 Sum_probs=133.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 489 FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHAS 568 (729)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (729)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 344445555666666666666666666542 44566677777777777777777777777766542 3566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 569 LEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAY 648 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 648 (729)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+.+.|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777888877777777664 4566677777777788888888888888777652 235667777778888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 649 GLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 649 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~ 700 (729)
..++++.+.. +.+..++..++.++...|++++|.+.+++++ ...|+...
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~~p~~~~ 228 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI--DIQPDHML 228 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH--HHCTTCHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH--ccCcchHH
Confidence 8888877753 4456677778888888888888888888887 45565443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-12 Score=125.18 Aligned_cols=203 Identities=11% Similarity=-0.004 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+..++..++..|...|++++|+..|+++.+..+. +...+..+...+...|++++|.+.|+++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 5667778888888888888888888888876543 56677778888888888888888888887754 456777788888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCH
Q 004814 252 SFCKE-GEMQEALELLWEMQGRGCSPN-GVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLL 329 (729)
Q Consensus 252 ~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 329 (729)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888777322333 4567777777778888888888887777654 23466666777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 330 VEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRK 377 (729)
Q Consensus 330 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 377 (729)
++|.+.++++.+..+..+...+..+...+...|+.++|...++.+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777666533135555666666666666666666666666543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-13 Score=134.44 Aligned_cols=201 Identities=11% Similarity=0.003 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+..+|..++..+...|++++|...+++++..+|. +..++..++..|.+.|++++|+..|+++.+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 86 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE---------------DAIPYINFANLLSSVNELERALAFYDKALEL 86 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4455566666666677777777777766665544 3455666666666677777777777666665
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYN 282 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 282 (729)
.+. +...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.+.++++.+. .+.+...+.
T Consensus 87 ~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 163 (243)
T 2q7f_A 87 DSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NENDTEARF 163 (243)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred CCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccHHHHH
Confidence 433 45556666666666666666666666665543 345555666666666666666666666666554 123455555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 283 VLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 283 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
.+...+.+.|++++|.+.++++.+.. +.+..++..+...|...|++++|.+.++++.+.
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55566666666666666666655543 223445555555555555555555555555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-13 Score=126.06 Aligned_cols=205 Identities=10% Similarity=-0.063 Sum_probs=176.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+..++..++..+...|++++|...+++++...|. +..++..++..|...|++++|...++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 69 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---------------NELAWLVRAEIYQYLKVNDKAQESFRQAL 69 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---------------chHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 346788899999999999999999999999988765 46678889999999999999999999999
Q ss_pred HCCCCCChHhHHHHHHHHHHC-CChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDN-GFSVKAREVYRMMGEFGI-KPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNG 278 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 278 (729)
+..+. +..++..++..+... |++++|...|+++.+.+. +.+..++..+...+.+.|++++|...|+++.+.. +.+.
T Consensus 70 ~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 147 (225)
T 2vq2_A 70 SIKPD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFP 147 (225)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HhCCC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCc
Confidence 87654 677888899999999 999999999999988322 2336788899999999999999999999998762 3457
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 279 VTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
..+..+...+.+.|++++|.+.++++.+.....+...+..+...+...|+.++|...++.+.+.
T Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8889999999999999999999999988753257778888888899999999999999998765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-13 Score=140.72 Aligned_cols=278 Identities=15% Similarity=0.109 Sum_probs=148.1
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-C
Q 004814 381 PDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPT----VVTYNTLIDGLCRYGDLEVAQQLKENMINQ----GIL-P 451 (729)
Q Consensus 381 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~-~ 451 (729)
.....+......+...|++++|...|+++.+.+. .+ ...+..+...+...|++++|...++++++. +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3445556666677777777777777777666431 12 245566666677777777777777665432 111 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 452 DVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQ-PDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLV 530 (729)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li 530 (729)
...++..+...+...|++++|...++++.+.... ++. .....++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHH
Confidence 2345556666666667777776666665543100 010 00022334444
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 531 HGLCKLGS--------------------LEEANELLRKMVGD----GFIP-DHITYTSIIHASLEMGDLRRGRDLFNNML 585 (729)
Q Consensus 531 ~~~~~~g~--------------------~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (729)
..+...|+ +++|...+++.++. +..+ ...++..+...+...|++++|.+.+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444 55555554443321 1011 12345555566666666666666666555
Q ss_pred HCCC-CCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 586 RKGL-SPT----LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIR-PN----VITYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 586 ~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
+... .++ ..++..+...|...|++++|...++++.+.... ++ ..++..++..|...|++++|...++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 011 225556666666666666666666665542100 01 3355666666666677777776666665
Q ss_pred HcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 656 EEGI-LPN----KYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 656 ~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+..- .++ ..++..+...|...|++++|.+.+++++
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4210 011 3355566666666777777777766665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.2e-13 Score=140.81 Aligned_cols=276 Identities=16% Similarity=0.082 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHH
Q 004814 385 SYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV----VTYNTLIDGLCRYGDLEVAQQLKENMINQ----G-ILPDVIT 455 (729)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~ 455 (729)
.+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...++++++. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555666666666666666666654211 22 34555666666666666666666665542 1 0112344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 456 YTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCK 535 (729)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~ 535 (729)
+..+...|...|++++|...++++.+.... . .+.+....++..+...|..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~---------------~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQ---------------L---------------GDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------H---------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------h---------------hchHHHHHHHHHHHHHHHH
Confidence 555555556666666666665555432000 0 0001123345556666666
Q ss_pred cCC-----------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC
Q 004814 536 LGS-----------------LEEANELLRKMVGD----GF-IPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL-SPT 592 (729)
Q Consensus 536 ~g~-----------------~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 592 (729)
.|+ +++|.+.+++.++. +. .....++..+...+...|++++|.+.+++..+... .++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 66666666655432 11 11234667777778888888888888887765410 011
Q ss_pred ----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC
Q 004814 593 ----LVTYTVLIHAHAARGRLELAFMYFSEMQVKGI--R---PNVITYNALINGLCRLRRIDQAYGLFIDMEEE----GI 659 (729)
Q Consensus 593 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~ 659 (729)
..++..+...|...|++++|...++++.+... . ....++..++..|...|++++|..++++..+. +.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 23677788888888999999888888765311 0 11456778888899999999999999888763 10
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 660 LP-NKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 660 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.+ ...++..+..+|.+.|++++|.+.++++++
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 134677888889999999999999999883
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.5e-13 Score=140.09 Aligned_cols=243 Identities=12% Similarity=0.002 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
....+..++..+...|++++|...++++++..+.... ....++..++..|...|++++|+..|+++++.
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR-----------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh-----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455667788899999999999999999988665210 11357888999999999999999999998763
Q ss_pred ----CCC-CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCC--------------
Q 004814 203 ----GLL-PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG-----IKPSIVTYNTMLDSFCKEGE-------------- 258 (729)
Q Consensus 203 ----~~~-~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-------------- 258 (729)
+.. ....++..+...+...|++++|...|+++.+.. .+....++..+...+...|+
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 116 AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 111 134567788888999999999999998876531 12234577888888888888
Q ss_pred ---HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc-cC----hhhHHHHHHHHHh
Q 004814 259 ---MQEALELLWEMQGR----GCSP-NGVTYNVLITGFSRNGELEQARGLIRDMLKLGLK-VS----AHSYNPIICGYSE 325 (729)
Q Consensus 259 ---~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~ 325 (729)
+++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..+.... .+ ..++..+...|..
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 88888887776442 1111 2236667777778888888888888777653211 01 1256666666777
Q ss_pred CCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 326 KGLLVEALNLEEEMVTRGVA-----PTLATYNILIYGLCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 376 (729)
.|++++|.+.+++....... ....++..+...+...|++++|.+.+++.+.
T Consensus 276 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777766665542110 0133455555555666666666655555443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-12 Score=117.60 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004814 522 DLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIH 601 (729)
Q Consensus 522 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 601 (729)
+..+|..+...+.+.|++++|++.|++.++..+. +..++..+..++.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5678888899999999999999999998887543 67788888899999999999999999888764 556777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 602 AHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQE 681 (729)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 681 (729)
.+...++++.|...+.++.+.. +.+...+..++.+|.+.|++++|++.|++..+.. +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8889999999999999988763 3367788889999999999999999999998864 5567788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q 004814 682 ALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 682 A~~~~~~m~~~~~~pd~~~ 700 (729)
|++.|++++ .+.|+...
T Consensus 160 A~~~~~~al--~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKAL--EKEEKKAK 176 (184)
T ss_dssp HHHHHHHHH--HTTHHHHH
T ss_pred HHHHHHHHH--hCCccCHH
Confidence 999999998 56676543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=124.65 Aligned_cols=219 Identities=9% Similarity=-0.041 Sum_probs=160.5
Q ss_pred hhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHH-------cCCCH-------HHHHHHHHHHHH-CCCC
Q 004814 141 RSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYT-------KKSMV-------EQCLLVFNKMLR-NGLL 205 (729)
Q Consensus 141 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~ 205 (729)
++|...|++++..+|. ++.+|..++..+. +.|++ ++|..+|+++++ ..+.
T Consensus 33 ~~a~~~~~~al~~~p~---------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~ 97 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 97 (308)
T ss_dssp HHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHcCC---------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc
Confidence 6788899999998876 5777777777765 35775 899999999998 4543
Q ss_pred CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004814 206 PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIV-TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVL 284 (729)
Q Consensus 206 ~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 284 (729)
+...|..++..+.+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+.. +++...|...
T Consensus 98 -~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~ 174 (308)
T 2ond_A 98 -NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTA 174 (308)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHH
T ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 66688888888999999999999999998853 22343 78888888888899999999998888763 2344445433
Q ss_pred HHHHH-hCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHh
Q 004814 285 ITGFS-RNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRG-VAP--TLATYNILIYGLCK 360 (729)
Q Consensus 285 i~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~ 360 (729)
+.... ..|+.++|.++|++.++.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 33322 2688888888888887753 2366777777777777788888888888777752 233 35567777777777
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 004814 361 WGRVSDARHRFFEMLRKN 378 (729)
Q Consensus 361 ~g~~~~A~~~~~~~~~~~ 378 (729)
.|+.++|..+++++.+..
T Consensus 254 ~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 254 IGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHc
Confidence 777777777777776644
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-13 Score=138.62 Aligned_cols=203 Identities=14% Similarity=0.022 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHHHHCCChhHHHHHHHHHHhC----CC-CCC
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD----VKNCNRIIKVLRDNGFSVKAREVYRMMGEF----GI-KPS 242 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~~-~~~ 242 (729)
....+..++..+.+.|++++|+..|+++++.++. + ...+..+...+...|++++|...|+++.+. +- +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3455667788889999999999999999887543 3 346777888888999999999988876542 11 122
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCC--------------------HHHH
Q 004814 243 IVTYNTMLDSFCKEGEMQEALELLWEMQGRGC-SPN----GVTYNVLITGFSRNGE--------------------LEQA 297 (729)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~--------------------~~~A 297 (729)
..++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677788888888888888888877654310 011 3366677777777777 7777
Q ss_pred HHHHHHHHhC----CC-ccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 004814 298 RGLIRDMLKL----GL-KVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGV-APT----LATYNILIYGLCKWGRVSDA 367 (729)
Q Consensus 298 ~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A 367 (729)
.+.+++..+. +. +....++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7776665432 10 11123455555555556666666655555543210 001 12344444555555555555
Q ss_pred HHHHHHHH
Q 004814 368 RHRFFEML 375 (729)
Q Consensus 368 ~~~~~~~~ 375 (729)
...+++..
T Consensus 247 ~~~~~~al 254 (406)
T 3sf4_A 247 SEYYKKTL 254 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-11 Score=120.27 Aligned_cols=217 Identities=14% Similarity=0.107 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 470 SMAREFFNEMLRKGLQPDRFAYTTQIAGEL-------KLGDT-------SEAYRLQEEMLAKGFPPDLITYNVLVHGLCK 535 (729)
Q Consensus 470 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~ 535 (729)
++|..+|+++++... .+...|..++..+. +.|++ ++|..++++.++.-.|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 455555655555421 13444444444433 24554 6777777777763124456677777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-HcCCHHHHH
Q 004814 536 LGSLEEANELLRKMVGDGFIPDHI-TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHA-ARGRLELAF 613 (729)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 613 (729)
.|++++|.++|+++++..+. +.. +|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777765322 232 67777777777777888888887777653 334444443333322 257788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 614 MYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG-ILP--NKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 614 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+|+++++.. +-+...|..++..+.+.|++++|..+|+++++.. ++| ....|..++..+.+.|+.++|..++++++
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888777652 2256677777777777788888888888877752 344 34567777777777788888888888777
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.4e-12 Score=115.05 Aligned_cols=167 Identities=11% Similarity=0.026 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
++..|..++.++.+.|++++|...|+++++.+|. +..++..++.+|.+.|++++|+..+.++...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVL 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4455555666666666666666666666555554 3445555555555566666666555555554
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYN 282 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 282 (729)
.+. +...+..+...+...++++.|...+.+..+.. +.+..++..+...+.+.|++++|++.|++..+.. +.+..+|.
T Consensus 69 ~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 145 (184)
T 3vtx_A 69 DTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQ 145 (184)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred Cch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHH
Confidence 433 34444445555555555555555555555433 3344455555555555555555555555555431 22344455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC
Q 004814 283 VLITGFSRNGELEQARGLIRDMLKL 307 (729)
Q Consensus 283 ~li~~~~~~g~~~~A~~~~~~m~~~ 307 (729)
.+...|.+.|++++|.+.|++.++.
T Consensus 146 ~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 146 SIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 5555555555555555555555543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.8e-13 Score=134.08 Aligned_cols=206 Identities=16% Similarity=0.070 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN- 202 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 202 (729)
...+...+..+...|++++|...++++++..|... .....++..++..|...|++++|+..++++++.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 34566678888899999999999999988765521 012457778889999999999999998887653
Q ss_pred ---CCCC-ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCC---------------
Q 004814 203 ---GLLP-DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGI-KPS----IVTYNTMLDSFCKEGE--------------- 258 (729)
Q Consensus 203 ---~~~~-~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------- 258 (729)
+..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3ro2_A 74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence 1111 244566777788888888888888887654210 011 3367777777777777
Q ss_pred -----HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc-----cChhhHHHHHHHH
Q 004814 259 -----MQEALELLWEMQGR----GCSP-NGVTYNVLITGFSRNGELEQARGLIRDMLKLGLK-----VSAHSYNPIICGY 323 (729)
Q Consensus 259 -----~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~~~~li~~~ 323 (729)
+++|.+.+++.... +..+ ....+..+...+...|++++|.+.+++..+.... ....++..+...+
T Consensus 154 ~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 77777777665431 1111 1234555666666666666666666665532100 0112444445555
Q ss_pred HhCCCHHHHHHHHHHHH
Q 004814 324 SEKGLLVEALNLEEEMV 340 (729)
Q Consensus 324 ~~~g~~~~A~~~~~~m~ 340 (729)
...|++++|.+.+++..
T Consensus 234 ~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555554443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-12 Score=131.92 Aligned_cols=277 Identities=14% Similarity=0.031 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHHHHCCChhHHHHHHHHHHhC----CC-CCChh
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD----VKNCNRIIKVLRDNGFSVKAREVYRMMGEF----GI-KPSIV 244 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 244 (729)
..+...+..+...|++++|+..|+++++..+. + ...+..+...+...|++++|...+++..+. +- +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34556778888999999999999999987543 3 356777888889999999999998887542 11 12255
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCC--------------------HHHHHH
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGC-SPN----GVTYNVLITGFSRNGE--------------------LEQARG 299 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~ 299 (729)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 677788888888888888888877654210 112 2356667777777777 677776
Q ss_pred HHHHHHhC----C-CccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 300 LIRDMLKL----G-LKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVA-PTLATYNILIYGLCKWGRVSDARHRFFE 373 (729)
Q Consensus 300 ~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (729)
.+++..+. + ......++..+...+...|++++|.+.+++..+.... ++
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------------------- 218 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------------------- 218 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--------------------------
Confidence 66665432 1 0111224444555555555555555555544431000 00
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 374 MLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSR----NLVP-TVVTYNTLIDGLCRYGDLEVAQQLKENMINQG 448 (729)
Q Consensus 374 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 448 (729)
......++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++.++..
T Consensus 219 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 219 -----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 0001224444555555555555555555544321 1000 13345556666666666666666666655421
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 449 -----ILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 449 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
......++..+...|.+.|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0111345666777777777777777777777664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-12 Score=130.18 Aligned_cols=230 Identities=11% Similarity=0.016 Sum_probs=160.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 004814 459 MVNGSCKMGNLSMAREFFNEMLRK----GLQP-DRFAYTTQIAGELKLGDTSEAYRLQEEMLAKG--F----PPDLITYN 527 (729)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~----~~~~~~~~ 527 (729)
....+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556667777777777766653 1111 12455566666777777777777776665431 1 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhhHH
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDGFI-PD----HITYTSIIHASLEMGDLRRGRDLFNNMLRK----GL-SPTLVTYT 597 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 597 (729)
.+...|...|++++|.+.+++.++.... ++ ..++..+..+|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888889999999999988887753111 11 247888889999999999999999988772 22 33466788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004814 598 VLIHAHAARGRLELAFMYFSEMQVK----GIRPNVITYNALINGLCRLRR---IDQAYGLFIDMEEEGILPN-KYTYTIL 669 (729)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 669 (729)
.++..|.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999988763 111112235678888888998 77788877766 22333 3467788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004814 670 INENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 670 ~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
+..|...|++++|...++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999873
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-12 Score=134.60 Aligned_cols=215 Identities=10% Similarity=-0.053 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 469 LSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDT-SEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLR 547 (729)
Q Consensus 469 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 547 (729)
+++++..+++..... ..+...+..+...+...|++ ++|+..+++.++.. +.+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444443331 12444555555555566666 66666666655543 4456677777777777778888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc--------CCHH
Q 004814 548 KMVGDGFIPDHITYTSIIHASLEM---------GDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR--------GRLE 610 (729)
Q Consensus 548 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 610 (729)
++++.. |+...+..+...+... |++++|.+.++++++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 777753 5567777777777777 88888888888887764 55677888888888877 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 611 LAFMYFSEMQVKGIR--PNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 611 ~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
+|+..|+++.+.... .+...|..++.+|...|++++|.+.|+++.+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888875210 267788888888888888888888888888763 44566788888888888888888876544
Q ss_pred H
Q 004814 689 M 689 (729)
Q Consensus 689 m 689 (729)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-12 Score=135.39 Aligned_cols=214 Identities=9% Similarity=-0.050 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCCh-hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004814 189 VEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFS-VKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLW 267 (729)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 267 (729)
+++++..+++.....+ .+...+..+...+...|++ ++|++.|++.++.. +.+..+|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5677777777766543 3677788888888889999 99999999888765 5567888889999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhC--------CCHH
Q 004814 268 EMQGRGCSPNGVTYNVLITGFSRN---------GELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEK--------GLLV 330 (729)
Q Consensus 268 ~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~ 330 (729)
+..+. .|+...+..+...+... |++++|.+.+++.++.. +.+...|..+...|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88876 46677888888888888 88889999998888875 34677888888888887 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 331 EALNLEEEMVTRGVA--PTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDE 408 (729)
Q Consensus 331 ~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 408 (729)
+|++.|++..+..+. .+...|..+...|...|++++|.+.|++..+..+ .+...+..+...+...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888875331 2677788888888888888888888888877654 4566777788888888888888765543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-11 Score=127.39 Aligned_cols=228 Identities=11% Similarity=-0.008 Sum_probs=176.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----CHHHHH
Q 004814 494 QIAGELKLGDTSEAYRLQEEMLAK----GFPP-DLITYNVLVHGLCKLGSLEEANELLRKMVGDGFI-P-----DHITYT 562 (729)
Q Consensus 494 li~~~~~~g~~~~A~~l~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-----~~~~~~ 562 (729)
....+...|++++|...+++..+. +.++ ...++..+...+...|++++|...+++.++.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 456678899999999999999874 2111 3467889999999999999999999988753111 1 235788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 004814 563 SIIHASLEMGDLRRGRDLFNNMLRKGL-SPT----LVTYTVLIHAHAARGRLELAFMYFSEMQVK----GI-RPNVITYN 632 (729)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~~~~~~ 632 (729)
.+...|...|++++|.+.+++.++... .++ ..++..++..|...|++++|++.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998875410 111 247888999999999999999999999872 22 33466789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 633 ALINGLCRLRRIDQAYGLFIDMEEE----GILPNKYTYTILINENCNAGN---WQEALRLYKEMLDREIEPDYCTHSALL 705 (729)
Q Consensus 633 ~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~pd~~~~~~ll 705 (729)
.++..|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..|+.......+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999998763 111122345678888889999 78888887776 5566655555566
Q ss_pred Hhhhccchhhc-HHHHHHHh
Q 004814 706 LKQLDKDYKVH-AVEYLESL 724 (729)
Q Consensus 706 ~~~l~~~g~~~-a~~~l~~l 724 (729)
+..+.+.|+.+ |.+++++-
T Consensus 346 a~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999998 98888654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=129.80 Aligned_cols=244 Identities=15% Similarity=0.097 Sum_probs=131.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 004814 418 VVTYNTLIDGLCRYGDLEVAQQLKENMINQ-------GILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFA 490 (729)
Q Consensus 418 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 490 (729)
..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++.+..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 344555556666666666666666665542 112234445555555556666666666555554320
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHH
Q 004814 491 YTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGD------GFIP-DHITYTS 563 (729)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~ 563 (729)
+.......+....++..+...+...|++++|...++++++. +..| ....+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00000111222345555666666666666666666665543 1111 2345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC------C-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCC--
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRK------G-LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK-------GIRPN-- 627 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~-- 627 (729)
+...+...|++++|.+.++++.+. + .+....++..+...|...|++++|...++++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 667777777777777777776653 1 1122446667777777777877777777777652 01111
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 628 -----VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 628 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
...+..+...+...+.+.+|...+++..... +.+..++..++.+|.+.|++++|.+.+++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1122333344455566667777777766532 3345678888999999999999999999987
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-12 Score=128.50 Aligned_cols=174 Identities=18% Similarity=0.143 Sum_probs=127.1
Q ss_pred CCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-------CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC---
Q 004814 168 SSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN-------GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF--- 237 (729)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~--- 237 (729)
+.+....++..++..|...|++++|+..|+++.+. .......++..+...+...|++++|...|+++.+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33456788899999999999999999999999873 22224556778888899999999999999888753
Q ss_pred ---C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004814 238 ---G-IKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR------GCSP-NGVTYNVLITGFSRNGELEQARGLIRDMLK 306 (729)
Q Consensus 238 ---~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (729)
+ .+....++..+...+...|++++|...|+++.+. +..| ....+..+...+...|++++|.+.++++.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1234567788888888888888888888887653 1222 344567777888888888888888888775
Q ss_pred C------C-CccChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004814 307 L------G-LKVSAHSYNPIICGYSEKGLLVEALNLEEEMVT 341 (729)
Q Consensus 307 ~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (729)
. + .+....++..+...|...|++++|.+.++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 1 122344666777777777777777777777665
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-10 Score=120.60 Aligned_cols=229 Identities=10% Similarity=-0.030 Sum_probs=159.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---C-CCHHHHH
Q 004814 459 MVNGSCKMGNLSMAREFFNEMLRKGL-QPD----RFAYTTQIAGELKLGDTSEAYRLQEEMLAKG--F---P-PDLITYN 527 (729)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~---~-~~~~~~~ 527 (729)
....+...|++++|+..++++.+... .++ ..++..+...+...|++++|...+++..+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455667777777777777765311 112 3355566667777777777777777665421 0 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHH
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGD----GFI-PDHITYTSIIHASLEMGDLRRGRDLFNNMLRK----GLSPTLVTYTV 598 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ 598 (729)
.+...|...|++++|.+.+++.++. +.. ....++..+..+|...|++++|.+.+++.... +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8888888899999998888877653 111 12346778888899999999999999988761 22334677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVKGI---RP-NVITYNALINGLCRLRR---IDQAYGLFIDMEEEGILPN-KYTYTILI 670 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~g~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 670 (729)
++..|.+.|++++|...+++..+... .+ ....+..+...|...|+ +++|+.++++. +..|+ ...+..++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 88999999999999999999887411 12 23356667777777888 77787777762 22222 34667888
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004814 671 NENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 671 ~~~~~~g~~~~A~~~~~~m~ 690 (729)
..|...|++++|...|++++
T Consensus 344 ~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999987
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-11 Score=134.03 Aligned_cols=168 Identities=10% Similarity=0.042 Sum_probs=143.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+..+|+.++.++.+.|++++|...|+++++.+|+ +...+..|+.+|.+.|++++|+..|++++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al 70 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---------------FAAAHSNLASVLQQQGKLQEALMHYKEAI 70 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346788999999999999999999999999998886 46788889999999999999999999999
Q ss_pred HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVT 280 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 280 (729)
+..+. +..+|+.+..+|.+.|++++|++.|++.++.. +.+..+|+.+..+|.+.|++++|++.|++..+.. +-+...
T Consensus 71 ~l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a 147 (723)
T 4gyw_A 71 RISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDA 147 (723)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 87655 67888889999999999999999999988865 5567889999999999999999999999988762 335678
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004814 281 YNVLITGFSRNGELEQARGLIRDMLK 306 (729)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (729)
+..+...+...|++++|.+.++++++
T Consensus 148 ~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 148 YCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 88888999999999998888887765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-10 Score=111.84 Aligned_cols=207 Identities=11% Similarity=0.022 Sum_probs=160.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004814 486 PDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSII 565 (729)
Q Consensus 486 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 565 (729)
.|+..+......+...|++++|+..|+..++...+++...+..+..++...|++++|++.+++.++..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567788888899999999999999999988753378888888999999999999999999999987533 567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRKGLSPTL-------VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN---VITYNALI 635 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~ 635 (729)
.++...|++++|.+.+++.++.. +.+. ..|..+...+...|++++|++.|+++.+. .|+ ...+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998874 4445 45788888889999999999999999885 455 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLL 706 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~ 706 (729)
.+|...| ...++++...+ ..+...|.... ....|.+++|+..+++++ .+.|+......++.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~--~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAV--TLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHh--hcCCCCHHHHHHHH
Confidence 7776544 44456665543 33445554443 345677899999999999 66787665555533
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.5e-10 Score=115.28 Aligned_cols=167 Identities=10% Similarity=-0.012 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChH----hHHHHHHHHHHCCChhHHHHHHHHHHhCCC-CCC----hh
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVK----NCNRIIKVLRDNGFSVKAREVYRMMGEFGI-KPS----IV 244 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~-~~~----~~ 244 (729)
.+...+...+...|++++|...+++.+......+.. +++.+...+...|++++|...+++..+... ..+ ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344556677788899999999999988765433322 345566677778888888888877654210 011 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc----Ch
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGR----GCS--P-NGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV----SA 313 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~ 313 (729)
++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..... ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3455666677777777777777665432 111 2 12344555666666777777777766665432110 12
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 314 HSYNPIICGYSEKGLLVEALNLEEEMV 340 (729)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (729)
.++..+...+...|++++|...+++..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234444455555555555555555544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=7.8e-10 Score=114.66 Aligned_cols=163 Identities=15% Similarity=-0.001 Sum_probs=77.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHH
Q 004814 388 TLLYGYCRSGNIGEAFLLFDELRSRNLVPTVV----TYNTLIDGLCRYGDLEVAQQLKENMINQGI-LPDV----ITYTI 458 (729)
Q Consensus 388 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~ 458 (729)
.....+...|++++|...+++........+.. .++.+...+...|++++|...+++..+... ..+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445556677777777777665543211211 344455556666666666666666554210 0111 22344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHH
Q 004814 459 MVNGSCKMGNLSMAREFFNEMLRK----GLQ--PD-RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFP----PDLITYN 527 (729)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~----g~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~----~~~~~~~ 527 (729)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++....... ....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 555566666666666666655542 111 11 122333344445555555555555544432110 0122334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004814 528 VLVHGLCKLGSLEEANELLRKMV 550 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~ 550 (729)
.+...+...|++++|...+++..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444555555555554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-10 Score=104.90 Aligned_cols=165 Identities=19% Similarity=0.104 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004814 523 LITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHA 602 (729)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 602 (729)
...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34566777788888999999998888877643 367788888888889999999999999888764 5567788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEA 682 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 682 (729)
+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988763 3467788888899999999999999999998864 55677888899999999999999
Q ss_pred HHHHHHHHH
Q 004814 683 LRLYKEMLD 691 (729)
Q Consensus 683 ~~~~~~m~~ 691 (729)
...++++++
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999873
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-10 Score=116.98 Aligned_cols=229 Identities=8% Similarity=-0.078 Sum_probs=158.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CHhhHH
Q 004814 424 LIDGLCRYGDLEVAQQLKENMINQGI-LP----DVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQ-P-----DRFAYT 492 (729)
Q Consensus 424 ll~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~-----~~~~~~ 492 (729)
....+...|++++|...++++.+... .+ ...++..+...|...|+++.|...+++..+.... + ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677778888888777765410 11 2446677777778888888888887777653110 1 134556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 004814 493 TQIAGELKLGDTSEAYRLQEEMLAK----GFP-PDLITYNVLVHGLCKLGSLEEANELLRKMVG-----DGFIPDHITYT 562 (729)
Q Consensus 493 ~li~~~~~~g~~~~A~~l~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 562 (729)
.+...+...|++++|...+++.++. +.+ ....++..+...|...|++++|.+.+++.++ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 6677788888888888888776553 111 1234677888889999999999999988877 4322 366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004814 563 SIIHASLEMGDLRRGRDLFNNMLRKG----LSPTLVTYTVLIHAHAARGR---LELAFMYFSEMQVKGIRP-NVITYNAL 634 (729)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~~~~l 634 (729)
.+...+.+.|++++|...+++..+.. .+.....+..+...|...|+ +.+|+..+++. +..| ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88899999999999999999887652 12223345666666777788 77777777762 2222 23456788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004814 635 INGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 635 ~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
+..|...|++++|...|+++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-11 Score=131.03 Aligned_cols=167 Identities=13% Similarity=0.042 Sum_probs=140.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004814 520 PPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVL 599 (729)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 599 (729)
|.+..+|+.+...+.+.|++++|++.|++.++..+. +..++..+..+|.+.|++++|++.|+++++.. +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 445678888889999999999999999988886533 57788888999999999999999999988875 5567889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNW 679 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 679 (729)
..+|...|++++|++.|+++++... -+...|+.++.+|...|++++|++.|+++++.. +-+...|..++.++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 9999999999999999999888532 257788999999999999999999999998863 44567888899999999999
Q ss_pred HHHHHHHHHHH
Q 004814 680 QEALRLYKEML 690 (729)
Q Consensus 680 ~~A~~~~~~m~ 690 (729)
++|.+.+++++
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888877
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-10 Score=104.78 Aligned_cols=165 Identities=13% Similarity=0.042 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
...+..++..|...|++++|+..++++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 456667777888888888888888888776543 56667777777888888888888888877654 4566677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHH
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 332 (729)
+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 77778888888877777665 23456666777777777777777777777776654 23456666666666666666666
Q ss_pred HHHHHHHHH
Q 004814 333 LNLEEEMVT 341 (729)
Q Consensus 333 ~~~~~~m~~ 341 (729)
.+.++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.7e-10 Score=105.76 Aligned_cols=206 Identities=9% Similarity=-0.054 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
++..+..++..|.+.|++++|+..|+++++..+.++...+..+..++...|++++|+..|++..+.. +.+..+|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4577888999999999999999999999998765677888889999999999999999999999875 556788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc--ChhhHHHHHHH
Q 004814 252 SFCKEGEMQEALELLWEMQGRGCSPNG-------VTYNVLITGFSRNGELEQARGLIRDMLKLGLKV--SAHSYNPIICG 322 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~ 322 (729)
.+...|++++|.+.|++..+.. +.+. ..|..+...+...|++++|.+.|+++++.+ +. +..++..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 9999999999999999998862 2344 457888889999999999999999999874 22 35677788888
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 004814 323 YSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTL 389 (729)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 389 (729)
|...| ...++++...+.. +...|.... ....+.+++|+..+++..+..+ .+..+...+
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l 220 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQ 220 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 76554 3445555554322 444454443 3345678999999999988663 334444333
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.5e-10 Score=111.28 Aligned_cols=174 Identities=11% Similarity=-0.059 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGF---IP--DHITYTSIIHASLEM-GDLRRGRDLFNNMLRKGLS-PT---- 592 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~---- 592 (729)
.+|+.+...|.+.|++++|+..+++.++... .+ -..++..+...|... |++++|...+++.++.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4556666666667777777766666654210 01 134677788888885 9999999988888764200 01
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV------ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKY-- 664 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 664 (729)
..++..++..|...|++++|+..|+++.+....... ..|..++.++...|++++|+..+++..+. .|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCc
Confidence 346788888899999999999999998886332221 15677888888999999999999988763 34321
Q ss_pred ----HHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004814 665 ----TYTILINENC--NAGNWQEALRLYKEMLDREIEPDYCTH 701 (729)
Q Consensus 665 ----~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~pd~~~~ 701 (729)
.+..++.++. ..+++++|+..|+++. .+.|+....
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~--~l~~~~~~~ 276 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM--RLDKWKITI 276 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS--CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC--ccHHHHHHH
Confidence 2444555554 4577999999998876 566655433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-10 Score=112.60 Aligned_cols=227 Identities=13% Similarity=-0.005 Sum_probs=149.8
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 004814 464 CKMGNLSMAREFFNEMLRK-------GLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK------GF-PPDLITYNVL 529 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------~~-~~~~~~~~~l 529 (729)
...|++++|+..+++.++. .......++..+...+...|++++|...++++++. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777777777766652 11223456777788888999999999999888764 21 2335678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCChhh
Q 004814 530 VHGLCKLGSLEEANELLRKMVGD------GF-IPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK------G-LSPTLVT 595 (729)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~ 595 (729)
...+...|++++|.+.++++++. .. .....++..+...+...|++++|.+.++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999888764 11 223557788888889999999999999888765 1 1223567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c-C-C-CC
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVK-------GIRP-NVITYNALINGLCRLRRIDQAYGLFIDMEE---E-G-I-LP 661 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~-g-~-~p 661 (729)
+..+...|...|++++|..+++++.+. ...+ ....+..+...+...+....+..+ .++.. . + . +.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHH
Confidence 788888889999999999999888763 1112 222344444444443333322222 11111 1 1 1 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 662 NKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 662 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
...++..++.+|...|++++|...++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234677888999999999999999998873
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5.5e-10 Score=110.44 Aligned_cols=229 Identities=14% Similarity=0.125 Sum_probs=157.2
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHH
Q 004814 105 RIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYT 184 (729)
Q Consensus 105 ~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 184 (729)
+.|+..+..+.. ...+....++..++.++...|++++|...+++++..... .. +.+......++..++.+|.
T Consensus 25 ~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~--~~~~~~~~~~~~~l~~~~~ 96 (283)
T 3edt_B 25 KQALEDLEKTSG-HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK-----TL--GKDHPAVAATLNNLAVLYG 96 (283)
T ss_dssp HHHHHHHHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HT--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH-----Hc--CCcchHHHHHHHHHHHHHH
Confidence 345555544432 122446788999999999999999999999998876311 00 0111235678899999999
Q ss_pred cCCCHHHHHHHHHHHHHC-----CC-CC-ChHhHHHHHHHHHHCCChhHHHHHHHHHHhC------C-CCCChhhHHHHH
Q 004814 185 KKSMVEQCLLVFNKMLRN-----GL-LP-DVKNCNRIIKVLRDNGFSVKAREVYRMMGEF------G-IKPSIVTYNTML 250 (729)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li 250 (729)
..|++++|+..|+++++. +. .| ...++..+...+...|++++|...|+++.+. + .+....++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 176 (283)
T 3edt_B 97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999999875 11 12 3566788999999999999999999998764 1 123456888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhCCCH------HHHHHHHHHHHhCCCccChhhH
Q 004814 251 DSFCKEGEMQEALELLWEMQGR-------GCSPN-GVTYNVLITGFSRNGEL------EQARGLIRDMLKLGLKVSAHSY 316 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~~~~ 316 (729)
..+.+.|++++|...+++..+. ...+. ...|..+...+...+.. ..+...++.... ..+....++
T Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 255 (283)
T 3edt_B 177 SCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTL 255 (283)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 9999999999999999988753 11222 22333333333333332 222222222111 123345678
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 317 NPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
..+...|...|++++|.+.+++..+.
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999988753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=109.23 Aligned_cols=171 Identities=9% Similarity=-0.076 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP 206 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 206 (729)
|...+.++...|++++|...+++++...+.. .+.......+..++.+|.+.|++++|+..|++.++.....
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKA---------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3334567788899999999998888764320 0111135677888888888888888888888887632110
Q ss_pred -C----hHhHHHHHHHHHHC-CChhHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004814 207 -D----VKNCNRIIKVLRDN-GFSVKAREVYRMMGEFGIKP-S----IVTYNTMLDSFCKEGEMQEALELLWEMQGRGCS 275 (729)
Q Consensus 207 -~----~~~~~~ll~~l~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 275 (729)
+ ..+++.+..+|... |++++|+..|++..+..... + ..+++.+...+.+.|++++|+..|++..+....
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 1 23456666666664 77777777776665431000 0 234566666666666666666666666654221
Q ss_pred CCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004814 276 PNG------VTYNVLITGFSRNGELEQARGLIRDMLK 306 (729)
Q Consensus 276 p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (729)
... ..|..+...+...|++++|...+++.++
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111 1344555556666666666666666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-09 Score=100.60 Aligned_cols=181 Identities=12% Similarity=0.053 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHh-hcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLI-GGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
+...+...+..+...|++++|...|++++..+|........ +........+.+...++.+|.+.|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45556667778889999999999999999998873111111 11111222344444488888888888888888888888
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHH
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE--MQEALELLWEMQGRGCSPNGV 279 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~ 279 (729)
..+. +...+..+..++...|++++|...|+++++.. |.+..+|..+...|...|+ .+.+...+..... ..|...
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 7655 67778888888888888888888888888765 5567788888877766553 3344555554432 122223
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDMLKL 307 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 307 (729)
.+..+..++...|++++|...|++.++.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3344455556667777888888777765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-08 Score=99.24 Aligned_cols=184 Identities=15% Similarity=0.136 Sum_probs=101.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 507 AYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGF-IPDHITYTSIIHASLEMGDLRRGRDLFNNML 585 (729)
Q Consensus 507 A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (729)
|+..+++.+..+ +++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555554443 34444445666666666777777776666655443 1244555666666667777777777776666
Q ss_pred HCCCCC-----ChhhHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 586 RKGLSP-----TLVTYTVLIHA--HAARG--RLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 586 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 23444444444 22233 667777777776554 24422223333366666777777777665543
Q ss_pred c-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 657 E-----G----ILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 657 ~-----g----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
. + -+.|..++..+|......|+ +|.++++++. ...|+.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~--~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV--KLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH--HTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH--HhCCCCh
Confidence 2 0 02244455455555555565 6667777766 4556554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-07 Score=100.08 Aligned_cols=390 Identities=12% Similarity=-0.002 Sum_probs=191.9
Q ss_pred HCC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-HHHH
Q 004814 220 DNG-FSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGE-LEQA 297 (729)
Q Consensus 220 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A 297 (729)
+.| +++.|..+|+.+... -|. |+++.+..+|++.... .|++..|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 377888888887763 233 8899999999988875 5688888887777666653 4556
Q ss_pred HHHHHHHHhC-CC-ccChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 298 RGLIRDMLKL-GL-KVSAHSYNPIICGYSE----KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRF 371 (729)
Q Consensus 298 ~~~~~~m~~~-~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 371 (729)
..+|+..+.. |. ..+...|...+..+.. .|+.+.+.++|+..+......-...|......- +......+.+++
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHH
Confidence 6777777653 42 2355677777665542 356667777777777631110111121111111 111111222222
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC--C-----HHHHHHHHHHH
Q 004814 372 FEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYG--D-----LEVAQQLKENM 444 (729)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g--~-----~~~A~~~~~~~ 444 (729)
.+.. +.+..|..+++++...-...+...|...+.--...+ - .+.+..+|+++
T Consensus 147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 1111 123334444444332100012234443333321110 0 23455666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 445 INQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLI 524 (729)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 524 (729)
+... +.+...|...+..+.+.|+.++|..++++.... |....+.. .|....+.++. ++.+.+.
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~------- 268 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRK------- 268 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHH-------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHH-------
Confidence 6642 445666666666666677777777777777665 33222111 11111111111 1111110
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004814 525 TYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHA 604 (729)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 604 (729)
+.. ...+.+ .. .. .......|...+....+.++.+.|..+|+++ ... +.+..+|...+..-.
T Consensus 269 --------~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 269 --------YSM-GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp --------TC-----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred --------HHh-hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 000 000000 00 00 0011234555555555666777777777777 221 123333332222222
Q ss_pred H-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 605 A-RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEAL 683 (729)
Q Consensus 605 ~-~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 683 (729)
. .++.+.|..+|+...+.- +-++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 235777777777777642 2234445556666667777777777777752 23556666666656677777777
Q ss_pred HHHHHHH
Q 004814 684 RLYKEML 690 (729)
Q Consensus 684 ~~~~~m~ 690 (729)
.+++++.
T Consensus 405 ~v~~~~~ 411 (493)
T 2uy1_A 405 ELVDQKM 411 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777766
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-07 Score=99.54 Aligned_cols=391 Identities=11% Similarity=0.001 Sum_probs=237.8
Q ss_pred cCC-CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHH
Q 004814 185 KKS-MVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE-MQEA 262 (729)
Q Consensus 185 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A 262 (729)
+.| +++.|..+|++++..- |. |+++.+..+|++.+.. .|++..|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 567 4888999999988742 33 8999999999999985 5799999999988888774 4567
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHH
Q 004814 263 LELLWEMQGR-GCS-PNGVTYNVLITGFS----RNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLE 336 (729)
Q Consensus 263 ~~~~~~m~~~-~~~-p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (729)
..+|+..... |.. .+...|...+..+. ..|+.+.+.++|+++++.. +. .+..+-..|
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P--~~--~~~~lw~~Y------------- 130 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP--MG--SLSELWKDF------------- 130 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC--CT--THHHHHHHH-------------
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh--hh--hHHHHHHHH-------------
Confidence 7888887653 433 36677887776654 2467889999999999842 11 112222222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC--C-----HHHHHHHHHHH
Q 004814 337 EEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSG--N-----IGEAFLLFDEL 409 (729)
Q Consensus 337 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~l~~~m 409 (729)
..+... .+..+...++... .+.+..|+.++.++...-...+...|...+..-...+ - .+.+..+|+++
T Consensus 131 ~~fE~~---~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 131 ENFELE---LNKITGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHHHH---HCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHH---hccccHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 111111 0111222222221 1234555555555443111024456766665533321 1 34567789988
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 004814 410 RSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRF 489 (729)
Q Consensus 410 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 489 (729)
.... +.+...|...+..+.+.|+.+.|..++++.+.. +.+...|.. |....+.++ +++.+.+.
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~---~~~~l~~~------- 268 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEA---VYGDLKRK------- 268 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTH---HHHHHHHH-------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhH---HHHHHHHH-------
Confidence 8753 445778888888888999999999999999987 444433332 222211111 13322221
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004814 490 AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASL 569 (729)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 569 (729)
+.. ...+.+ .. .. .......|...+....+.+..+.|..+|+++ +. ...+...|......-.
T Consensus 269 --------~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 269 --------YSM-GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEY 330 (493)
T ss_dssp --------TC-----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHH
T ss_pred --------HHh-hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHH
Confidence 100 000000 00 00 0112345667777777778899999999998 32 1234444443333222
Q ss_pred h-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 570 E-MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAY 648 (729)
Q Consensus 570 ~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 648 (729)
. .++.+.|..+|+...+.. +.+...+...++.....|+.+.|..+|+++. .....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 336999999999998863 3345566677777788999999999999973 25677888888778889999999
Q ss_pred HHHHHHHH
Q 004814 649 GLFIDMEE 656 (729)
Q Consensus 649 ~~~~~m~~ 656 (729)
.+++++.+
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.1e-09 Score=98.30 Aligned_cols=136 Identities=10% Similarity=0.032 Sum_probs=101.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 563 SIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLR 642 (729)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 642 (729)
.+..++.+.|++++|...+++.++.. |.+...+..+..+|...|++++|+..|+++++... .+...+..++.+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHh
Confidence 37888899999999999999998875 56788899999999999999999999999988632 26778888888887665
Q ss_pred C--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 643 R--IDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 643 ~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
+ .+.+...+++... ..|....+..+..++...|++++|+..|++++ .+.|+......+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~l 196 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHHHHHHH
Confidence 4 3445555655542 23333345556677788899999999999998 788886544433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-09 Score=102.49 Aligned_cols=191 Identities=9% Similarity=-0.027 Sum_probs=116.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+...+...+..+.+.|++++|...|++++...|.. .....++..++.+|.+.|++++|+..|++++
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH------------EWAADAQFYLARAYYQNKEYLLAASEYERFI 79 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3567777788888888899999999888888876651 1126677788888888899999999998888
Q ss_pred HCCCC-CC-hHhHHHHHHHHHH--------CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 201 RNGLL-PD-VKNCNRIIKVLRD--------NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQ 270 (729)
Q Consensus 201 ~~~~~-~~-~~~~~~ll~~l~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (729)
+..+. |. ..++..+..++.. .|++++|+..|+++++.. +.+......+... ..+.
T Consensus 80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~ 144 (261)
T 3qky_A 80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELR 144 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHH
T ss_pred HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHH
Confidence 86542 22 3456677777877 888888888888887753 2233333222110 0000
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc--ChhhHHHHHHHHHhC----------CCHHHHHHHHHH
Q 004814 271 GRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV--SAHSYNPIICGYSEK----------GLLVEALNLEEE 338 (729)
Q Consensus 271 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~ 338 (729)
.. -...+..+...|.+.|++++|...|+++++..... ....+..+..+|... |++++|...+++
T Consensus 145 ~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 145 AK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 00 00113344555555666666666666655542211 123444555555543 556666666666
Q ss_pred HHHC
Q 004814 339 MVTR 342 (729)
Q Consensus 339 m~~~ 342 (729)
+.+.
T Consensus 221 ~~~~ 224 (261)
T 3qky_A 221 LLQI 224 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.7e-09 Score=89.31 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLC 639 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 639 (729)
.+..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 35556666777777777777777776654 4456667777777777777888887777777653 235666777777788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 640 RLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
..|++++|.+.++++.+.. +.+...+..++..+.+.|++++|...+++++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 8888888888888877753 4456677777788888888888888888777
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-09 Score=120.14 Aligned_cols=173 Identities=11% Similarity=-0.008 Sum_probs=101.6
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004814 499 LKLGDTSEAYRLQEEML--------AKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLE 570 (729)
Q Consensus 499 ~~~g~~~~A~~l~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 570 (729)
...|++++|++.+++.+ +. .+.+...+..+...+.+.|++++|++.++++++... .+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 55666666666666665 32 244455666666666666666666666666665532 245566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 571 MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGL 650 (729)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 650 (729)
.|++++|.+.|+++++.. +.+...|..+..+|.+.|++++ ++.|+++.+... .+...|..++.++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666553 3345566666666666666666 666666665421 2455666666666666666666666
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 004814 651 FIDMEEEGILPN-KYTYTILINENCNAGN 678 (729)
Q Consensus 651 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 678 (729)
|+++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 6666553 333 3455555555555444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.4e-08 Score=94.22 Aligned_cols=218 Identities=7% Similarity=-0.053 Sum_probs=142.9
Q ss_pred hhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 004814 140 LRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKS--MVEQCLLVFNKMLRNGLLPDVKNCNRIIKV 217 (729)
Q Consensus 140 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 217 (729)
.++|+.++++++..+|. ...+|+.-..++...| ++++++..++.++...+. +..+|+.-..+
T Consensus 49 s~~aL~~t~~~L~~nP~---------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~i 112 (306)
T 3dra_A 49 SERALHITELGINELAS---------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLI 112 (306)
T ss_dssp SHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcH---------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHH
Confidence 35788888888888876 3556666666777777 888888888888887765 66677766555
Q ss_pred H----HHC---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 218 L----RDN---GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ--EALELLWEMQGRGCSPNGVTYNVLITGF 288 (729)
Q Consensus 218 l----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~li~~~ 288 (729)
+ ... +++++++++++.+.+.. +-|..+|+--..++.+.|.++ ++++.++++.+.. +-|...|+.-...+
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll 190 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLL 190 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5 555 67888888888888765 567777877777777777777 8888888887763 33666776666556
Q ss_pred HhCCC------HHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHH
Q 004814 289 SRNGE------LEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVE-ALNLEEEMVTRG--VAPTLATYNILIYGLC 359 (729)
Q Consensus 289 ~~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~li~~~~ 359 (729)
.+.|. ++++.+.+++++... +-|..+|+-+...+.+.|+..+ +.++..++.+.+ -..+...+..+++.|.
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 56555 666777777666654 3366666666666666665333 333444433321 1124455555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004814 360 KWGRVSDARHRFFEMLR 376 (729)
Q Consensus 360 ~~g~~~~A~~~~~~~~~ 376 (729)
+.|+.++|.++++.+.+
T Consensus 270 ~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 55666666666665554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.3e-09 Score=100.84 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCC
Q 004814 632 NALINGLCRLRRIDQAYGLFIDMEEEGILPN----KYTYTILINENCNA----------GNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 632 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~pd 697 (729)
..++..|.+.|++++|+..|+++++.. |+ ...+..++.+|... |++++|+..|+++++ ..|+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~ 227 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPD 227 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCC
Confidence 566788888999999999999988753 32 34677777788766 888999999999883 4454
Q ss_pred H---HHHHHHHHhhhccchhhc
Q 004814 698 Y---CTHSALLLKQLDKDYKVH 716 (729)
Q Consensus 698 ~---~~~~~ll~~~l~~~g~~~ 716 (729)
. .....++..++.+.++.+
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhh
Confidence 3 233334355555544443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.5e-10 Score=99.29 Aligned_cols=144 Identities=10% Similarity=-0.066 Sum_probs=88.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRID 645 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 645 (729)
..+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|+++++... -+...|..++.+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchH
Confidence 33445566677777766665542 22344555666777777777777777777766422 25666777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHhhhccchh
Q 004814 646 QAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRL-YKEMLDREIEPDYCTHSALLLKQLDKDYK 714 (729)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~pd~~~~~~ll~~~l~~~g~ 714 (729)
+|+..|+++++.. +-+...|..++..|.+.|++++|.+. +++++ .+.|+......+....+.+.|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al--~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAA--KLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH--HHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777777653 33456677777777777777665544 46666 4566555444444555555553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-08 Score=88.19 Aligned_cols=130 Identities=16% Similarity=0.183 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.+..++..|...|++++|...++++.+.++. +...+..++..+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3455666777777777777777777765433 55566666667777777777777777766544 345556666666677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKL 307 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 307 (729)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777776666542 234555666666666666666666666666553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-07 Score=92.95 Aligned_cols=233 Identities=12% Similarity=0.070 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCC--ChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNG--FSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
.+++.+.....+...-++|+..+++++..++. +..+|+.-..++...| ++++++++++.++... +-+..+|+.-..
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~ 111 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHH
Confidence 34444444455555667899999999987755 6667888888888888 8899999999888765 556667776555
Q ss_pred HH----Hhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHhCCCccChhhHHHHHHH
Q 004814 252 SF----CKE---GEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELE--QARGLIRDMLKLGLKVSAHSYNPIICG 322 (729)
Q Consensus 252 ~~----~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~li~~ 322 (729)
.+ .+. +++++++++++++.+.. +-+-.+|+.-.-.+.+.|.++ ++.+.++++++.++ -|..+|+.-...
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 55 444 67888888888887762 336667776666666777776 77777777777653 366666666555
Q ss_pred HHhCCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHhHHHHHHHHH
Q 004814 323 YSEKGL------LVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSD-ARHRFFEMLRKN--VIPDIISYNTLLYGY 393 (729)
Q Consensus 323 ~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~ 393 (729)
+...|+ ++++++.++++....+. |...|+-+...+.+.|+..+ +.....++...+ -..+...+..+...|
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~ 268 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY 268 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 555554 55566666555554433 55555555555555555332 222333332211 113444455555555
Q ss_pred HHcCCHHHHHHHHHHHhh
Q 004814 394 CRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 394 ~~~g~~~~A~~l~~~m~~ 411 (729)
.+.|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 555555555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-07 Score=92.47 Aligned_cols=243 Identities=12% Similarity=-0.032 Sum_probs=136.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 004814 181 LIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ 260 (729)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (729)
+-..-.|.+..++.-..++ ........-.-+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3345678888888743332 2222222333355777777777642 11133333333333332 222
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-ccChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004814 261 EALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGL-KVSAHSYNPIICGYSEKGLLVEALNLEEEM 339 (729)
Q Consensus 261 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (729)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667777766654 44555556677777777888888888777766543 124556667777777777777777777777
Q ss_pred HHCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004814 340 VTRGVAP-----TLATYNILIYG--LCKWG--RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELR 410 (729)
Q Consensus 340 ~~~g~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 410 (729)
.+. .| +..+...|+.+ ....| ++++|..+|+++.... |+..+-..++.++.+.|++++|...++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 664 33 23444444444 22223 6777777777765543 443333344446667777777777776554
Q ss_pred hCC---------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 411 SRN---------LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ 447 (729)
Q Consensus 411 ~~~---------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 447 (729)
+.. -+-+..+...+|......|+ +|.++++++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 320 02244555444444444555 666666666665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-09 Score=96.85 Aligned_cols=162 Identities=14% Similarity=0.066 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 004814 126 VFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL 205 (729)
Q Consensus 126 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 205 (729)
.+...+..+.+.|++++|...++++++.+|. +...+..++.+|.+.|++++|+..|+++.+..+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p- 71 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS---------------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ- 71 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-
Confidence 3455666777778888888877777777665 466677777777777888888777777766543
Q ss_pred CChHhHHHHHHH-HHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 004814 206 PDVKNCNRIIKV-LRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSP-NGVTYNV 283 (729)
Q Consensus 206 ~~~~~~~~ll~~-l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ 283 (729)
+...+...... +...+...+|...|++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~ 149 (176)
T 2r5s_A 72 -DNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKT 149 (176)
T ss_dssp -CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred -ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence 33332222211 122223344566666666543 3456666666777777777777777777666653221 2445666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 004814 284 LITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~ 305 (729)
+...+...|+.++|...|++.+
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHH
Confidence 6666666666666666666554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=95.62 Aligned_cols=143 Identities=10% Similarity=-0.043 Sum_probs=83.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhH
Q 004814 132 EILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNC 211 (729)
Q Consensus 132 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 211 (729)
.++...|++++|+..+++++..+|. ++..+..++.+|.+.|++++|++.|+++++..+. +..+|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~---------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~ 68 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ---------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAH 68 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH---------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 3344455666666666666655554 2334455666677777777777777777666544 56666
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHh
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALEL-LWEMQGRGCSPNGVTYNVLITGFSR 290 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~ 290 (729)
..+..++.+.|++++|+..|++.++.. +.+..+|..+...+.+.|++++|.+. +++..+.. +-+..+|......+.+
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 666666666666666666666666654 34556666666666666666554443 35555431 2244455555555444
Q ss_pred CC
Q 004814 291 NG 292 (729)
Q Consensus 291 ~g 292 (729)
.|
T Consensus 147 ~G 148 (150)
T 4ga2_A 147 EG 148 (150)
T ss_dssp CC
T ss_pred hC
Confidence 44
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.5e-08 Score=93.14 Aligned_cols=191 Identities=10% Similarity=-0.038 Sum_probs=125.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+..++..+.+.|++++|...|++++...|.. ......+..++.+|.+.|++++|+..|+++++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45667777888999999999999999998876652 123567778889999999999999999999987
Q ss_pred CCCCCh--HhHHHHHHHHHH------------------CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004814 203 GLLPDV--KNCNRIIKVLRD------------------NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEA 262 (729)
Q Consensus 203 ~~~~~~--~~~~~ll~~l~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (729)
.+.... .++..+..++.+ .|++++|...|+++++.. |.+..++.......
T Consensus 71 ~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~--------- 140 (225)
T 2yhc_A 71 NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV--------- 140 (225)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH---------
T ss_pred CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH---------
Confidence 654221 244455555544 456667777777666643 22222222111100
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc--ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 263 LELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV--SAHSYNPIICGYSEKGLLVEALNLEEEMV 340 (729)
Q Consensus 263 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (729)
.+...+ ......+...|.+.|++++|...|+++++..+.. ...++..+..+|.+.|+.++|.+.++.+.
T Consensus 141 -~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 141 -FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp -HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 000000 0011345667788888888888888888764221 12467778888888888888888888887
Q ss_pred HCCC
Q 004814 341 TRGV 344 (729)
Q Consensus 341 ~~g~ 344 (729)
..++
T Consensus 212 ~~~~ 215 (225)
T 2yhc_A 212 ANSS 215 (225)
T ss_dssp HCCS
T ss_pred hhCC
Confidence 7654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.2e-09 Score=115.15 Aligned_cols=173 Identities=10% Similarity=-0.004 Sum_probs=145.8
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 464 CKMGNLSMAREFFNEML--------RKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCK 535 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~ 535 (729)
...|++++|++.++++. +.. ..+...+..+...+.+.|++++|+..++++++.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 432 2255678888899999999999999999999874 6688899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 004814 536 LGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMY 615 (729)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 615 (729)
.|++++|.+.|+++++..+. +...+..+..++.+.|++++ .+.|+++++.+ +.+...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999987533 66788899999999999999 99999999875 56788999999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004814 616 FSEMQVKGIRPN-VITYNALINGLCRLRR 643 (729)
Q Consensus 616 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 643 (729)
|+++.+. .|+ ...+..++.++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9999875 455 5577778888776665
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.4e-08 Score=90.99 Aligned_cols=176 Identities=14% Similarity=0.030 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 004814 506 EAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMG----DLRRGRDLF 581 (729)
Q Consensus 506 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 581 (729)
+|++.|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666666654 66666677777777777777777777777654 45566666666666 5 777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 004814 582 NNMLRKGLSPTLVTYTVLIHAHAA----RGRLELAFMYFSEMQVKGIR-PNVITYNALINGLCR----LRRIDQAYGLFI 652 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 652 (729)
++..+.| +...+..|...|.. .+++++|+++|++..+.|.. .+...+..|...|.. .++.++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 55666777777765 67788888888887775421 015667777777777 677888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 004814 653 DMEEEGILPNKYTYTILINENCNA-G-----NWQEALRLYKEMLDRE 693 (729)
Q Consensus 653 ~m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~ 693 (729)
+..+. +.+...+..|...|... | ++++|+..|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88775 23445666677766653 3 7888888888877554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-08 Score=99.43 Aligned_cols=166 Identities=14% Similarity=0.047 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.+...+..+...+.+.|++++|...+++++..+|+ +...+..++.+|.+.|++++|...++++..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---------------NGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---------------chhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 45667777888888888888888888888888776 466777788888888888888888888876
Q ss_pred CCCCCChHhHH-HHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHH
Q 004814 202 NGLLPDVKNCN-RIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCS-PNGV 279 (729)
Q Consensus 202 ~~~~~~~~~~~-~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~ 279 (729)
..+ +..... .....+.+.++.++|...|++..+.. +.+...+..+...+...|++++|...|.++.+.... .+..
T Consensus 180 ~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 QDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp GGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred hhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 543 333322 23334666777777888888777665 556777778888888888888888888887775211 1245
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (729)
.+..++..+...|+.++|...+++.+
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 67777777777777777777776654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=6.5e-08 Score=91.98 Aligned_cols=186 Identities=10% Similarity=-0.062 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCh---hhHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSI---VTYN 247 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~ 247 (729)
+..+..++..+.+.|++++|+..|+++++..+... ...+..++.++.+.|++++|+..|+++++.. +.+. .++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 45566778889999999999999999998654322 3567788999999999999999999998764 2222 2455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 004814 248 TMLDSFCK------------------EGEMQEALELLWEMQGRGCSPN-GVTYNVLITGFSRNGELEQARGLIRDMLKLG 308 (729)
Q Consensus 248 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 308 (729)
.+..++.+ .|++++|...|+++.+. .|+ ...+.+..... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHH----
Confidence 55555554 45677777777777665 232 22222211100 000000
Q ss_pred CccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 309 LKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPT--LATYNILIYGLCKWGRVSDARHRFFEMLRKNV 379 (729)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 379 (729)
......+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+.++|.+.++.+...++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123567889999999999999999998643311 25688899999999999999999999988764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-07 Score=88.57 Aligned_cols=175 Identities=16% Similarity=0.054 Sum_probs=93.5
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 004814 472 AREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLG----SLEEANELLR 547 (729)
Q Consensus 472 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 547 (729)
|.+.|++..+.| ++..+..+...|...+++++|+..|+...+.| +...+..+...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 334444444432 34444444444444455555555555544443 34444445555544 4 5566666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHH----cCCHHHHHHHHHH
Q 004814 548 KMVGDGFIPDHITYTSIIHASLE----MGDLRRGRDLFNNMLRKGLS-PTLVTYTVLIHAHAA----RGRLELAFMYFSE 618 (729)
Q Consensus 548 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 618 (729)
+..+.| +...+..+...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 655543 34455555555554 55666666666666655410 015556666666666 5666777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 004814 619 MQVKGIRPNVITYNALINGLCRL-R-----RIDQAYGLFIDMEEEG 658 (729)
Q Consensus 619 ~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g 658 (729)
..+. ..+...+..|...|... | +.++|...|++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6664 12344555566665543 2 6677777777776665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.8e-09 Score=93.77 Aligned_cols=159 Identities=12% Similarity=-0.044 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHh
Q 004814 177 DLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS-FCK 255 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~ 255 (729)
..++..+.+.|++++|+..|+++++..+. +...+..+..++.+.|++++|...|+++.+.. |+...+..+... +.+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34555666667777777777666654433 45556666666666666666666666665442 233322222111 111
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhCCCHHHHHH
Q 004814 256 EGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV-SAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
.+...+|...+++..+.. +.+...+..+...+...|++++|...|+++++..+.+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 122223455555554431 1234455555555555555555555555555443221 23344445555555555555555
Q ss_pred HHHHH
Q 004814 335 LEEEM 339 (729)
Q Consensus 335 ~~~~m 339 (729)
.|++.
T Consensus 166 ~y~~a 170 (176)
T 2r5s_A 166 KYRRQ 170 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-08 Score=97.78 Aligned_cols=165 Identities=9% Similarity=-0.012 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-H
Q 004814 520 PPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYT-V 598 (729)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 598 (729)
+.+...+..+...+.+.|++++|...|+++++..+. +...+..+...+.+.|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 344555556666666777777777777776665422 45566666667777777777777776665542 3333222 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN---KYTYTILINENCN 675 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~ 675 (729)
....+...++.++|...++++.+.. +.+...+..+...|...|++++|+..+.++++.. |+ ...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHH
Confidence 2223555666666777777766652 2255666677777777777777777777777643 22 4466677777777
Q ss_pred cCCHHHHHHHHHHHH
Q 004814 676 AGNWQEALRLYKEML 690 (729)
Q Consensus 676 ~g~~~~A~~~~~~m~ 690 (729)
.|+.++|...|++.+
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 777777777776654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-08 Score=108.88 Aligned_cols=154 Identities=8% Similarity=-0.073 Sum_probs=113.2
Q ss_pred cCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 004814 137 SGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIK 216 (729)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 216 (729)
.|++++|...++++++.+|. +...+..++..|.+.|++++|++.|++.++..+. +...+..+..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ---------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGR 65 (568)
T ss_dssp -------------------C---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46788888888888887765 4667888889999999999999999999987654 6778888888
Q ss_pred HHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CC
Q 004814 217 VLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRN---GE 293 (729)
Q Consensus 217 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~ 293 (729)
++...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+... |+
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999988765 5567788889999999999999999999888762 33567788888888888 89
Q ss_pred HHHHHHHHHHHHhCC
Q 004814 294 LEQARGLIRDMLKLG 308 (729)
Q Consensus 294 ~~~A~~~~~~m~~~~ 308 (729)
.++|.+.+++.++.+
T Consensus 144 ~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999888765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-08 Score=107.57 Aligned_cols=154 Identities=12% Similarity=0.053 Sum_probs=96.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 501 LGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDL 580 (729)
Q Consensus 501 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 580 (729)
.|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++.++... .+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 366777777777776653 45567777777777777777777777777776643 2566777777777777777777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 004814 581 FNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRL---RRIDQAYGLFIDMEEE 657 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 657 (729)
+++..+.. +.+...+..+..+|...|++++|.+.++++.+.. +.+...+..+..++... |+.++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 77777664 4456677777777777777777777777777653 22456677777777777 7777777777777775
Q ss_pred C
Q 004814 658 G 658 (729)
Q Consensus 658 g 658 (729)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-06 Score=87.41 Aligned_cols=172 Identities=13% Similarity=0.001 Sum_probs=126.0
Q ss_pred CChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 004814 138 GLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKS-MVEQCLLVFNKMLRNGLLPDVKNCNRIIK 216 (729)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 216 (729)
+..++|+.++++++..+|. +..+|+.-..++...| .+++++..++.++...++ +..+|+.-..
T Consensus 68 e~se~AL~lt~~~L~~nP~---------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~w 131 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA---------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLL 131 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch---------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 3345788888888888886 4556666666666777 599999999999988766 7778888877
Q ss_pred HHHHC-C-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004814 217 VLRDN-G-FSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ--------EALELLWEMQGRGCSPNGVTYNVLIT 286 (729)
Q Consensus 217 ~l~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~li~ 286 (729)
++.+. + ++++++++++.+++.. +.|..+|+--..++.+.|.++ ++++.++++.+.. .-|...|+....
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~ 209 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWY 209 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 77776 6 8889999999998876 567778877666666666665 7888888887763 336777777777
Q ss_pred HHHhCCC-------HHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCC
Q 004814 287 GFSRNGE-------LEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGL 328 (729)
Q Consensus 287 ~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 328 (729)
.+.+.++ ++++.+.+++++... +-|..+|+-+-..+.+.|+
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 7766665 577777777777665 3366777766666655554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.5e-08 Score=81.81 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=81.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINE 672 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 672 (729)
...+...+..|.+.|++++|++.|+++++.. +.+...|..++.+|.+.|++++|+..+++.++.+ +.+...|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456667777888888888888888877753 2366777778888888888888888888887764 4456677888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 004814 673 NCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQL 709 (729)
Q Consensus 673 ~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l 709 (729)
+...|++++|++.|++++ .+.|+......-|..+|
T Consensus 91 ~~~~~~~~~A~~~~~~al--~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDAL--QVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHH--HHCcCCHHHHHHHHHhc
Confidence 888888888888888887 56676554444334443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-07 Score=82.84 Aligned_cols=99 Identities=10% Similarity=0.021 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+...+..++..|.+.|++++|+..|+++++..+. +...|..+..+|...|++++|+..|++..+.. |.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 4556677777777888888888888888776654 66777777777788888888888888777765 456677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 004814 252 SFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~ 272 (729)
+|.+.|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888777765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-06 Score=85.24 Aligned_cols=184 Identities=12% Similarity=-0.001 Sum_probs=134.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNG-FSVKAREVYRMMGEFGIKPSIVTYNTMLDSF 253 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (729)
+++.+.....+.+..++|++.+++++..++. +..+|+.-..++...| .+++++++++.++... +-+..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3334444445556668999999999998765 6777998888888888 5999999999999876 66788888888877
Q ss_pred Hhc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHhCCCccChhhHHHHHHHH
Q 004814 254 CKE-G-EMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELE--------QARGLIRDMLKLGLKVSAHSYNPIICGY 323 (729)
Q Consensus 254 ~~~-g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~li~~~ 323 (729)
.+. + ++++++++++++.+.. +-|..+|+.-.-.+.+.|.++ ++.+.++++++..+ -|..+|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 776 7 8899999999998873 346777776555555555555 78888888887753 3777787777777
Q ss_pred HhCCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 324 SEKGL-------LVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGR 363 (729)
Q Consensus 324 ~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 363 (729)
.+.++ ++++++.++++....+. |...|+-+-..+.+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 77665 56777777777665443 66666665555555554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.3e-08 Score=95.80 Aligned_cols=132 Identities=8% Similarity=-0.010 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-C----hHhHHHHHHHHHHCCChhHHHHHHHHHHhC----CCCC-Ch
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP-D----VKNCNRIIKVLRDNGFSVKAREVYRMMGEF----GIKP-SI 243 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~~~~-~~ 243 (729)
..|...+..|...|++++|...|.++.+..... + ..+++.+..+|.+.|++++|+..|++.++. |-+. -.
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344455566677777777777777766531110 1 234556666666666777666666665432 1000 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004814 244 VTYNTMLDSFCKEGEMQEALELLWEMQGRG----CSP-NGVTYNVLITGFSRNGELEQARGLIRDMLK 306 (729)
Q Consensus 244 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (729)
.+++.+...|.. |++++|+..|++..+.. ..+ ...+++.+...|.+.|++++|.+.|++.++
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555 55655555555544320 000 022344444555555555555555554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-07 Score=94.31 Aligned_cols=171 Identities=10% Similarity=-0.008 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL 204 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 204 (729)
..|...+.++...|++++|...+.+++...+.. .+.......+..++.+|.+.|++++|+..|++.++.-.
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~ 107 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN---------RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYV 107 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 356677788999999999999999988765431 01112356788899999999999999999999876311
Q ss_pred ---CC--ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 004814 205 ---LP--DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKP-----SIVTYNTMLDSFCKEGEMQEALELLWEMQGR-- 272 (729)
Q Consensus 205 ---~~--~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 272 (729)
.+ -..+++.+..+|.. |++++|+..|++.++..... ...+++.+...+.+.|++++|+..|++..+.
T Consensus 108 ~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 108 ENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp TTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11 13467788888888 99999999999987632111 1457888999999999999999999998763
Q ss_pred --CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 273 --GCSPN-GVTYNVLITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 273 --~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (729)
+..+. ...+..++..+...|++++|...|++.+
T Consensus 187 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 187 EMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11111 2256666677777899999999998887
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-07 Score=79.70 Aligned_cols=94 Identities=11% Similarity=-0.073 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004814 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK 255 (729)
Q Consensus 176 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (729)
+..++..|.+.|++++|++.|+++++..+. +...|..+..++.+.|++++|+..|++.++.+ +.+..+|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 333444444444444444444444444332 34444444444444555555555554444433 3334444455555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 004814 256 EGEMQEALELLWEMQG 271 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~ 271 (729)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-07 Score=88.96 Aligned_cols=203 Identities=10% Similarity=-0.035 Sum_probs=150.0
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHhcCChhhHHHHHHHHHhccchhhhHHHh-hc-C--CCC
Q 004814 101 REKPRIALRFFRWVETQPGVKRDEFVFCTI-------LEILIESGLLRSAYWVVETVVCVNMHGILDVLI-GG-G--LSS 169 (729)
Q Consensus 101 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l-------~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~-~~-~--~~~ 169 (729)
.+++..|+..|..+.+.. +-....|..+ ...|.+.++..+++..+.+.+...|..+...+- .+ + +..
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 578999999999987644 3578889888 788888888899998899988877763211111 11 1 111
Q ss_pred --cchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC--hhh
Q 004814 170 --CVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS--IVT 245 (729)
Q Consensus 170 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 245 (729)
.....+...++..+...|++++|.+.|+.+...++ +......+...+.+.+++++|+..|+...+.. .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 12466777788889999999999999999887663 33366667778899999999999998665532 111 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 004814 246 YNTMLDSFCKEGEMQEALELLWEMQGRGCSPN--GVTYNVLITGFSRNGELEQARGLIRDMLKLG 308 (729)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 308 (729)
+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77788889999999999999998875433254 3356667778888899999999999998864
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.7e-08 Score=97.18 Aligned_cols=99 Identities=13% Similarity=-0.108 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+..++..+.+.|++++|...+++++..+|. +..++..++.+|.+.|++++|+..++++++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------VAVYYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4566667777777777777777777777766654 3556666777777777777777777777766
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
.+. +...+..+..++...|++++|...|++..+.
T Consensus 68 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 68 DGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 543 5566666677777777777777777666553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.1e-07 Score=85.41 Aligned_cols=132 Identities=9% Similarity=-0.045 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAH 603 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 603 (729)
..+..+...+...|++++|...+++.+ .|+...+..+...+...|++++|.+.+++..+.. +.+...|..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 344556666777777777777777663 4466677777777777777777777777777654 44566777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004814 604 AARGRLELAFMYFSEMQVKGIRPNV----------------ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNK 663 (729)
Q Consensus 604 ~~~g~~~~A~~~~~~~~~~g~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (729)
...|++++|+..|+++.+.... +. ..+..++.+|.+.|++++|...++++.+. .|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 7777777777777777765221 22 56666777777777777777777777663 4554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-07 Score=90.02 Aligned_cols=189 Identities=10% Similarity=-0.071 Sum_probs=142.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCChHhHHHH-------HHHHHHCCChhHHHHHHHHHHhCCCCCC---------------
Q 004814 185 KKSMVEQCLLVFNKMLRNGLLPDVKNCNRI-------IKVLRDNGFSVKAREVYRMMGEFGIKPS--------------- 242 (729)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~l~~~g~~~~A~~~~~~~~~~~~~~~--------------- 242 (729)
..++.++|.+.|.++.+..+. ....|+.+ ..++.+.++..++...+..-.+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 689999999999999998765 77889888 67888888888888777776652 221
Q ss_pred -------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccC--h
Q 004814 243 -------IVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVS--A 313 (729)
Q Consensus 243 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~ 313 (729)
...+..+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+...+.. .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 122345667788899999999999988775 3444466666778889999999999998665432 111 3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 314 HSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPT--LATYNILIYGLCKWGRVSDARHRFFEMLRKNV 379 (729)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 379 (729)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4677888889999999999999998875432243 33566677888889999999999999888653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=5.3e-06 Score=82.27 Aligned_cols=162 Identities=14% Similarity=0.012 Sum_probs=119.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHH
Q 004814 529 LVHGLCKLGSLEEANELLRKMVGDGF-IPDH----ITYTSIIHASLEMGDLRRGRDLFNNMLRKGLS-PT----LVTYTV 598 (729)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 598 (729)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...++++...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788899999999888876432 2221 13334666677778999999999998874222 22 236888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVK-----GIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEE----GILPN-KYTYT 667 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 667 (729)
++..|...|++++|+..++++.+. +..+. ..++..++..|.+.|++++|..++++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 899999999999999999998741 11122 336788899999999999999999988762 22222 56788
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHH
Q 004814 668 ILINENCNAG-NWQEALRLYKEML 690 (729)
Q Consensus 668 ~l~~~~~~~g-~~~~A~~~~~~m~ 690 (729)
.++.++.+.| ++++|.+.+++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8999999999 4799999999987
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.9e-08 Score=87.17 Aligned_cols=104 Identities=13% Similarity=-0.026 Sum_probs=86.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
+...+..+...+.+.|++++|+..|+++.+.. +.+...|..++.+|...|++++|+..|+++.+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 45577788888889999999999999998863 2367788889999999999999999999998864 556778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 672 ENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 672 ~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
+|.+.|++++|+..|++++ .+.||..
T Consensus 113 ~~~~lg~~~eA~~~~~~al--~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVI--QHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HhCCCHH
Confidence 9999999999999999998 4566654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.5e-07 Score=81.06 Aligned_cols=128 Identities=12% Similarity=-0.075 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.+..++..|...|++++|...|++.++..+. +...+..+..++...|++++|...|++..+.. +.+..++..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444445555555555555555555544322 34445555555555555555555555555443 334455555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNV--LITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~ 305 (729)
..|++++|.+.|++..+.. +.+...+.. ++..+.+.|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 5556666655555555431 112333322 2222445556666665555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-06 Score=82.17 Aligned_cols=129 Identities=13% Similarity=-0.012 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.+..++..|...|++++|+..|+++. .|+...+..+..++.+.|++++|...|++..+.. +.+..++..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34557778889999999999999885 4578889999999999999999999999998865 567888999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNG----------------VTYNVLITGFSRNGELEQARGLIRDMLKLGL 309 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 309 (729)
+.|++++|.+.|++..+.. +.+. ..+..+...+.+.|++++|.+.+++..+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999998752 2222 6778888899999999999999999988653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-06 Score=78.66 Aligned_cols=129 Identities=8% Similarity=-0.018 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004814 559 ITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGL 638 (729)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 638 (729)
..+..+...+...|++++|...+++..+.. +.+..++..++.++...|++++|...+++..+.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345666777778888888888888877764 4567778888888888888888888888887753 23567788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 004814 639 CRLRRIDQAYGLFIDMEEEGILPNKYTYT--ILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
...|++++|...++++.+.. +.+...+. .++..+.+.|++++|++.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888888753 33455553 33444677888888888887764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.9e-07 Score=77.29 Aligned_cols=120 Identities=13% Similarity=-0.006 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+..++..++.++...|++++|...+++++..+|. +..++..++.+|...|++++|+..++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---------------DAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445677777777777788888888777777776654 35566677777777777777777777777
Q ss_pred HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
+..+. +...+..+..++.+.|++++|.+.|++..+.. +.+...+..+...+.+.|
T Consensus 78 ~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 78 QLEPT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HhCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 75543 55666667777777777777777777766543 334455555555555444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.9e-08 Score=84.40 Aligned_cols=107 Identities=14% Similarity=-0.053 Sum_probs=73.0
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004814 581 FNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL 660 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 660 (729)
+++++... +.+...+..+...+...|++++|+..|+++.... +.+...|..++.+|...|++++|+..|+++++.+ +
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 44444432 2345566666777777777777777777777653 2256677777777777777777777777777753 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 661 PNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 661 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+...+..++.+|...|++++|+..|++++
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455677777777777777777777777777
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.5e-06 Score=84.68 Aligned_cols=165 Identities=13% Similarity=-0.007 Sum_probs=112.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--hhh
Q 004814 526 YNVLVHGLCKLGSLEEANELLRKMVGDGFIPDH-----ITYTSIIHASLEMGDLRRGRDLFNNMLRKGL---SPT--LVT 595 (729)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~ 595 (729)
+...+..+...|++++|.+.+.+.++....... ..+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334555666777777777777766664322111 1233455566777888888888888775421 111 347
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-HH
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVK-GIRPN-----VITYNALINGLCRLRRIDQAYGLFIDMEEEG----ILPN-KY 664 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~ 664 (729)
|+.++..|...|++++|...++++.+. ...|+ ..++..++..|...|++++|+.++++..+.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 788888888889999998888888731 00122 2577888888999999999999998887531 1111 45
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEA-LRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A-~~~~~~m~ 690 (729)
+|..++.+|.+.|++++| ...+++++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788888899999999999 77788876
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-07 Score=81.49 Aligned_cols=99 Identities=15% Similarity=0.024 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+...+..++..|.+.|++++|+..|+++++..+. +...|..+..++...|++++|+..|++.++.. +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4556667777788888888888888888776654 66677777777788888888888888777654 455667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 004814 252 SFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~ 272 (729)
++...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=96.33 Aligned_cols=132 Identities=12% Similarity=-0.011 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--------------hHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--------------VKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
....+..++..|.+.|++++|+..|+++++..+... ...|..+..++.+.|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778888889999999999999999988664422 356667777777777777777777777665
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 004814 238 GIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQA-RGLIRDML 305 (729)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 305 (729)
. +.+..+|..+..+|...|++++|+..|++..+.. +.+...+..+...+.+.|+.++| ..+++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4456667777777777777777777777766652 23455666666666666666666 33455443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-06 Score=84.81 Aligned_cols=168 Identities=13% Similarity=0.050 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL- 205 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 205 (729)
+...+..+...|++++|...+++++...+...... .....+..++..|...|++++|+..++++++....
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ---------QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH---------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH---------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 33445555566666666666665555432210000 01122333445555556666666666665542211
Q ss_pred --CC--hHhHHHHHHHHHHCCChhHHHHHHHHHHh---CC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 004814 206 --PD--VKNCNRIIKVLRDNGFSVKAREVYRMMGE---FG-IKP--SIVTYNTMLDSFCKEGEMQEALELLWEMQGR--- 272 (729)
Q Consensus 206 --~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~---~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 272 (729)
+. ..+++.+...|...|++++|...|+++.+ .. -.+ ...+++.++..|.+.|++++|...+++..+.
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 11 22445555555555555555555555441 10 000 0134445555555555555555555544321
Q ss_pred -CCCCC-HHHHHHHHHHHHhCCCHHHH-HHHHHH
Q 004814 273 -GCSPN-GVTYNVLITGFSRNGELEQA-RGLIRD 303 (729)
Q Consensus 273 -~~~p~-~~~~~~li~~~~~~g~~~~A-~~~~~~ 303 (729)
+.... ..+|..+...|.+.|++++| ...+++
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 00000 23444444445555555554 333443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-07 Score=84.34 Aligned_cols=120 Identities=10% Similarity=0.111 Sum_probs=82.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 004814 569 LEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALING-LCRLRRI--D 645 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~--~ 645 (729)
...|++++|...+++..+.. +.+...|..+...|...|++++|...|+++.+.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777776654 4566777777777777788888888877777653 2256666777777 6677777 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 646 QAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
+|...++++.+.. +.+...+..++.++...|++++|...++++++
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 8888888777753 44566777777778888888888888888773
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.3e-07 Score=91.53 Aligned_cols=98 Identities=12% Similarity=-0.038 Sum_probs=57.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004814 488 RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHA 567 (729)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 567 (729)
...+..+...+.+.|++++|+..++..++.. +.+...|..+...+.+.|++++|...++++++... .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445555556666666666666666665542 34555666666666666666666666666665432 244555566666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 004814 568 SLEMGDLRRGRDLFNNMLRK 587 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~ 587 (729)
+...|++++|...|++..+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=73.77 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
...+..++..|...|++++|.+.|+++.+..+. +...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 456667777777788888888888877765433 55666677777777777777777777776654 4456666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGF 288 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 288 (729)
+.+.|++++|...|+++.+.. +.+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 777777777777777766542 22344444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-07 Score=84.45 Aligned_cols=121 Identities=11% Similarity=0.063 Sum_probs=86.8
Q ss_pred HhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 004814 135 IESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRI 214 (729)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (729)
...|++++|...+++++..+|. +...+..++.+|...|++++|+..|+++.+..+. +...+..+
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 84 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ---------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAAL 84 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 4467777788888887777665 4567777888888888888888888888776543 56666677
Q ss_pred HHH-HHHCCCh--hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 215 IKV-LRDNGFS--VKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 215 l~~-l~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
..+ +...|++ ++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777 6677777 88888888877754 445667777778888888888888888877765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=5.4e-07 Score=76.64 Aligned_cols=116 Identities=11% Similarity=-0.084 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.+..++..+...|++++|+..|+++.+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444444555555555555555555443322 34444455555555555555555555554432 333445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGE 293 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 293 (729)
+.|++++|...|++..+.. +.+...+..+...+.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555554431 2234444445555544443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=8.6e-07 Score=74.58 Aligned_cols=96 Identities=20% Similarity=0.219 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINE 672 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 672 (729)
...+..++..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555666666666666666655542 2244555566666666666666666666665542 3345555666666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 004814 673 NCNAGNWQEALRLYKEML 690 (729)
Q Consensus 673 ~~~~g~~~~A~~~~~~m~ 690 (729)
+...|++++|...+++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 666666666666666665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-05 Score=77.47 Aligned_cols=174 Identities=10% Similarity=-0.031 Sum_probs=125.1
Q ss_pred HHhcCChh-hHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHC
Q 004814 134 LIESGLLR-SAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKS----------MVEQCLLVFNKMLRN 202 (729)
Q Consensus 134 l~~~g~~~-~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~ 202 (729)
..+.|.++ +|+.+++.++..+|.. ..+|+.-..++...| .+++++.+++.++..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~---------------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDF---------------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 34566665 7899999999998873 223332222222222 268999999999998
Q ss_pred CCCCChHhHHHHHHHHHHCCC--hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHH
Q 004814 203 GLLPDVKNCNRIIKVLRDNGF--SVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE-MQEALELLWEMQGRGCSPNGV 279 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~ 279 (729)
.+. +..+|+.-..++.+.++ +++++.+++.+.+.. +-|..+|+--..++...|. ++++++.++++.+.. +-|..
T Consensus 104 ~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~S 180 (331)
T 3dss_A 104 NPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYS 180 (331)
T ss_dssp CTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHH
T ss_pred CCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHH
Confidence 766 88889988888888884 889999999999876 6688889888888888888 689999999998874 44777
Q ss_pred HHHHHHHHHHhC--------------CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhC
Q 004814 280 TYNVLITGFSRN--------------GELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEK 326 (729)
Q Consensus 280 ~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 326 (729)
.|+.....+.+. +.++++.+.+...+... +-|..+|+-+-..+.+.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 887776666554 34667777777777665 33666666554444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.5e-06 Score=83.61 Aligned_cols=165 Identities=5% Similarity=-0.022 Sum_probs=104.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CChH----hHHHHHHHHHHCCChhHHHHHHHHHHhCCCC-CC----hhh
Q 004814 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLL-PDVK----NCNRIIKVLRDNGFSVKAREVYRMMGEFGIK-PS----IVT 245 (729)
Q Consensus 176 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~-~~----~~~ 245 (729)
+...+..+...|++++|...+++..+.... |+.. .+..+...+...|++++|+..|+++.+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 334567788899999999999998874322 2211 2334566666777888888888888763222 22 225
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----Ccc-Chh
Q 004814 246 YNTMLDSFCKEGEMQEALELLWEMQG----R-GCSPN-GVTYNVLITGFSRNGELEQARGLIRDMLKLG----LKV-SAH 314 (729)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~-~~~ 314 (729)
++.+...|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|...+++.++.. ..+ -..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 77788888888888888888877763 1 11122 2256667777777777777777777766421 111 134
Q ss_pred hHHHHHHHHHhCCC-HHHHHHHHHHHH
Q 004814 315 SYNPIICGYSEKGL-LVEALNLEEEMV 340 (729)
Q Consensus 315 ~~~~li~~~~~~g~-~~~A~~~~~~m~ 340 (729)
+|..+...|.+.|+ +++|.+.+++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55666666666663 466666665554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.3e-07 Score=83.82 Aligned_cols=156 Identities=10% Similarity=-0.015 Sum_probs=98.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHHcCCH
Q 004814 535 KLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK----GLS-PTLVTYTVLIHAHAARGRL 609 (729)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 609 (729)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456677777644443331 2224556666777777777777777777766652 111 2245667777778888888
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC
Q 004814 610 ELAFMYFSEMQVK----GIRP--NVITYNALINGLCRLRRIDQAYGLFIDMEEEGI-LPN----KYTYTILINENCNAGN 678 (729)
Q Consensus 610 ~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~ 678 (729)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+..- ..+ ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888776653 1111 133567777888888888888888887764210 112 2245677788888888
Q ss_pred HHHHHHHHHHHHH
Q 004814 679 WQEALRLYKEMLD 691 (729)
Q Consensus 679 ~~~A~~~~~~m~~ 691 (729)
+++|.+.++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888773
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.8e-07 Score=75.99 Aligned_cols=97 Identities=11% Similarity=0.046 Sum_probs=58.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455556666666666666666666666542 1245556666666666666666666666666542 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 004814 672 ENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 672 ~~~~~g~~~~A~~~~~~m~ 690 (729)
++.+.|++++|++.+++++
T Consensus 93 ~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 6666666666666666666
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=74.53 Aligned_cols=96 Identities=11% Similarity=0.029 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINE 672 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 672 (729)
...|..++..+.+.|++++|+..|++.++.. +.+...|..++.+|.+.|++++|+..+++.++.+ +.+...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456666677777777777777777777653 2356677777777778888888888887777753 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 004814 673 NCNAGNWQEALRLYKEML 690 (729)
Q Consensus 673 ~~~~g~~~~A~~~~~~m~ 690 (729)
+...|++++|+..|++++
T Consensus 82 ~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 82 QIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHH
Confidence 888888888888888777
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-06 Score=72.98 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 561 YTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCR 640 (729)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 640 (729)
+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3333444444444444444444444332 2233344444444444444444444444444321 1123344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 004814 641 LRRIDQAYGLFIDMEE 656 (729)
Q Consensus 641 ~g~~~~A~~~~~~m~~ 656 (729)
.|++++|...+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=89.00 Aligned_cols=146 Identities=10% Similarity=-0.077 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhh-HHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGIL-DVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
+...+..++.++.+.|++++|...|++++...|.... +.-. ..........++..++.+|.+.|++++|+..|+++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~-~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE-AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678889999999999999999999999998776200 0000 0000001257888999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEA-LELLWEMQG 271 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 271 (729)
..+. +..++..+..+|...|++++|+..|+++.+.. +.+..++..+..++.+.|++++| ...|..|..
T Consensus 225 ~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765 78889999999999999999999999999875 56788999999999999999988 456666643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.49 E-value=8.2e-07 Score=77.22 Aligned_cols=99 Identities=9% Similarity=0.014 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+...+..++..+.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|+..|++..+.+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 4556667888888999999999999999887654 77778888888999999999999999888865 566778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 004814 252 SFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~ 272 (729)
++...|++++|.+.|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999998888764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=4e-06 Score=69.58 Aligned_cols=103 Identities=16% Similarity=0.061 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINE 672 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 672 (729)
...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...+++..+.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455666666777777777777777776642 2256666777777777777777777777777653 3456667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 673 NCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 673 ~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
+...|++++|.+.+++++ ...|+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~--~~~~~~~ 106 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGL--KHEANNP 106 (118)
T ss_dssp HHHTTCHHHHHHHHHHHH--TTCTTCH
T ss_pred HHHHhhHHHHHHHHHHHH--HcCCCCH
Confidence 777777777777777777 4555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=80.89 Aligned_cols=156 Identities=12% Similarity=-0.069 Sum_probs=84.5
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCC
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF----GI-KPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~ 258 (729)
...|++++|.+.++.+.. .+.....++..+...+...|++++|...|++..+. +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356777888775544433 22224556667777777778888777777776551 11 1224456666777777777
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhCC
Q 004814 259 MQEALELLWEMQGR----GCSP--NGVTYNVLITGFSRNGELEQARGLIRDMLKL----GLK-VSAHSYNPIICGYSEKG 327 (729)
Q Consensus 259 ~~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g 327 (729)
+++|.+.+++..+. +..| ....+..+...+...|++++|...+++..+. +.. ....++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777665432 1111 1234555666666667777776666665532 100 00122344445555555
Q ss_pred CHHHHHHHHHHHH
Q 004814 328 LLVEALNLEEEMV 340 (729)
Q Consensus 328 ~~~~A~~~~~~m~ 340 (729)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=76.31 Aligned_cols=101 Identities=8% Similarity=-0.082 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.+...+..++..+.+.|++++|...|++++..+|. +...+..++.+|.+.|++++|+..|+++++
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---------------DARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35566777888899999999999999999998886 577888999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG 238 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 238 (729)
..+. +...+..+..++...|++++|...|+...+..
T Consensus 81 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 81 MDIN-EPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8765 77788889999999999999999999988753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-06 Score=74.19 Aligned_cols=103 Identities=13% Similarity=0.048 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHH
Q 004814 594 VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG--ILPN----KYTYT 667 (729)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~ 667 (729)
..+..++..+.+.|++++|+..|+++++.. +-+...|..++.+|.+.|++++|++.+++.++.+ ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566777777777777777777777642 2246667777777777777777777777776531 1111 13566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 668 ILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
.++.++...|++++|++.|++.+. ..||..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~ 117 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPE 117 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHH
Confidence 677777778888888888888773 345543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00013 Score=72.14 Aligned_cols=188 Identities=9% Similarity=0.016 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 004814 504 TSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLG--SLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGD-LRRGRDL 580 (729)
Q Consensus 504 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 580 (729)
+++++.+++.++... |.+..+|+.-...+.+.+ .+++++.+++++++..+. +..+|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 456666666666543 556666666666666666 367777777777766533 66666666666666666 4677777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 004814 581 FNNMLRKGLSPTLVTYTVLIHAHAAR--------------GRLELAFMYFSEMQVKGIRPNVITYNALINGLCRL----- 641 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----- 641 (729)
++++++.. +.|...|+.....+... +.++++++.+.+++...+ -|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccc
Confidence 77777664 45666666666555544 346778888887777532 2566666555555554
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 642 ------RRIDQAYGLFIDMEEEGILPNK-YTYTILIN---ENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 642 ------g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~---~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
+.++++++.++++.+. .||. -++.+++. +....|..+++...+.+++ .+.|...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~Dp~r~ 309 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK--AVDPMRA 309 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH--HHCGGGH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH--HhCcchh
Confidence 4578888888888885 4543 23333322 2224677888888888888 6777544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.6e-06 Score=69.15 Aligned_cols=94 Identities=10% Similarity=-0.104 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 004814 177 DLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKE 256 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (729)
..++..+...|++++|...|+++.+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+..++.+.
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 33444444444444444444444443322 33444444444444455555555554444432 22344444455555555
Q ss_pred CCHHHHHHHHHHHHhC
Q 004814 257 GEMQEALELLWEMQGR 272 (729)
Q Consensus 257 g~~~~A~~~~~~m~~~ 272 (729)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 5555555555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=4.6e-07 Score=84.03 Aligned_cols=128 Identities=9% Similarity=-0.117 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTL----------------VTYTVLIHAHAARGRLELAFMYFSEMQVKG 623 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 623 (729)
.+..+...+...|++++|...|++.++.. +.+. ..|..+..+|...|++++|+..++++.+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45555556666666666666666666542 1121 556666666777777777777777776642
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 004814 624 IRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEAL-RLYKEML 690 (729)
Q Consensus 624 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~ 690 (729)
+.+...+..++.+|...|++++|...|++..+.. +.+...+..+..++...|+.+++. ..++.+.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2355666667777777777777777777776642 334556666666666666666655 4444444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-06 Score=72.16 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCC--CCC----hhhHHHH
Q 004814 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGI--KPS----IVTYNTM 249 (729)
Q Consensus 176 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l 249 (729)
+..|+..|.+.|++++|+..|+++++..+. +...|+.+..+|.+.|++++|++.|++.++... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 334444555555555555555555554332 444455555555555555555555555443210 000 1245555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 004814 250 LDSFCKEGEMQEALELLWEMQG 271 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~ 271 (729)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5666666666666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=8.7e-07 Score=82.17 Aligned_cols=124 Identities=12% Similarity=0.000 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---------------hHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD---------------VKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
...+..++..|.+.|++++|+..|+++++..+... ...+..+..++.+.|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34555667777788888888888888877543211 145556666666666666666666666654
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004814 238 GIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQAR 298 (729)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 298 (729)
. +.+..++..+..++...|++++|.+.|++..+.. +.+...+..+...+...++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4455566666666666666666666666665541 224445555555555444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.4e-06 Score=72.18 Aligned_cols=112 Identities=10% Similarity=-0.039 Sum_probs=76.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN----VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYT 667 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 667 (729)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556667777777777777777777777764 344 4567777777778888888888888777753 34566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 004814 668 ILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQ 708 (729)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~ 708 (729)
.+..++...|++++|...+++++ .+.|+.......+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCV--SLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH--HHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHH
Confidence 77778888888888888888877 4455544333332433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.3e-06 Score=72.58 Aligned_cols=100 Identities=13% Similarity=-0.110 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.+...+..++..+...|++++|...+++++..+|. +..++..++.+|...|++++|+..++++++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------VAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45677777777777777777777777777776654 355666777777777777777777777776
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
..+. +...+..+..++...|++++|...|++..+.
T Consensus 72 ~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 72 LDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6543 5566666777777777777777777766553
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=6.9e-06 Score=69.46 Aligned_cols=98 Identities=15% Similarity=0.004 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
...+..++..|.+.|++++|+..|++.++..+. +...|..+..++.+.|++++|+..|++.++.. +.+..+|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 445667778888889999999999988887654 67778888888888888888888888888765 5567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 004814 253 FCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~ 272 (729)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888887764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.1e-06 Score=75.57 Aligned_cols=99 Identities=11% Similarity=-0.111 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+..+..++.+.|++++|...|++++..+|. +..++..++.+|.+.|++++|+..|+++++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---------------NPIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4455666666666666666666666666666554 3455666666666666666666666666665
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
.+. +...|..+..++...|++++|...|++.++.
T Consensus 75 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 75 DPK-YSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 443 4555666666666666666666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-06 Score=77.08 Aligned_cols=97 Identities=14% Similarity=0.023 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004814 558 HITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALING 637 (729)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 637 (729)
...+..+...+.+.|++++|.+.|++.++.. +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3345555555555555555555555555543 3345555555555555555555555555555532 1134455555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004814 638 LCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~ 656 (729)
|...|++++|...|++.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=4.2e-06 Score=71.93 Aligned_cols=98 Identities=9% Similarity=-0.018 Sum_probs=63.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004814 591 PTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILI 670 (729)
Q Consensus 591 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 670 (729)
.+...+..+...+...|++++|...|++..+.. +.+...+..++.++...|++++|...+++..+.+ +.+...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345566666666666777777777776666642 2245566666667777777777777777766653 33555666677
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004814 671 NENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 671 ~~~~~~g~~~~A~~~~~~m~ 690 (729)
.++...|++++|+..|++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 77777777777777777766
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.7e-06 Score=69.93 Aligned_cols=100 Identities=14% Similarity=-0.021 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENC 674 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 674 (729)
.+..+...+.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..+++.++.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45566777888888888888888888753 2267778888888888888888888888888864 446677888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 675 NAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 675 ~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
..|++++|+..+++++ ...|+.
T Consensus 97 ~~g~~~~A~~~~~~al--~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWL--LSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHH--C-----
T ss_pred HcCCHHHHHHHHHHHH--HhCcCC
Confidence 8888888888888888 566653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=4e-06 Score=71.09 Aligned_cols=97 Identities=11% Similarity=0.114 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 004814 594 VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGI--LPN----KYTYT 667 (729)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~ 667 (729)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555556666666666666666665542 22455566666666666666666666666655320 111 44566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 668 ILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.++.++...|++++|.+.++++++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 666666667777777777776663
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.30 E-value=5e-06 Score=68.24 Aligned_cols=97 Identities=12% Similarity=-0.038 Sum_probs=66.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILP--NKYTYTIL 669 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l 669 (729)
+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556666677777777777777777776652 2355666777777777777777777777777653 33 46667777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHH
Q 004814 670 INENCNA-GNWQEALRLYKEML 690 (729)
Q Consensus 670 ~~~~~~~-g~~~~A~~~~~~m~ 690 (729)
..++.+. |++++|.+.+++++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 7777777 77777777777776
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.2e-06 Score=70.23 Aligned_cols=95 Identities=11% Similarity=-0.090 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP 206 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 206 (729)
+..++..+.+.|++++|...++++++.+|. +...+..++.+|.+.|++++|+..|+++++..+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~- 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE---------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK- 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 334555666667777777777776666655 3555666666666666666666666666665543
Q ss_pred ChHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 207 DVKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 207 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
+...+..+..++...|++++|+..|++.++.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555566666666666666666666666543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-05 Score=69.49 Aligned_cols=103 Identities=12% Similarity=-0.098 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.+...+..++..+...|++++|...++++++..|.. .....++..++.+|...|++++|+..++++++
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 466777777777778888888888887777765541 00145666677777777777777777777776
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
..+. +...+..+..++...|++++|...|++..+.
T Consensus 94 ~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 94 KDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5433 4556666666677777777777777766654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.25 E-value=6.6e-06 Score=69.72 Aligned_cols=108 Identities=16% Similarity=0.086 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC-------hhh
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS-------IVT 245 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~-------~~~ 245 (729)
...+..++..|...|++++|...|+++.+..+. +...+..+...+...|++++|...|+++.+.. +.+ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHH
Confidence 445667788888888888888888888876543 66677778888888888888888888877643 122 566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004814 246 YNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVL 284 (729)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 284 (729)
+..+...+.+.|++++|.+.|++..+. .|+......+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 777777777788888888888777764 3454444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.8e-06 Score=67.40 Aligned_cols=96 Identities=13% Similarity=-0.047 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC--ChhhHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKP--SIVTYNTMLDS 252 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~ 252 (729)
.+..++..|.+.|++++|...|+++.+..+. +...+..+..++...|++++|.+.|++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 4445666677777777777777777765543 45566666666677777777777777666653 33 45566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhC
Q 004814 253 FCKE-GEMQEALELLWEMQGR 272 (729)
Q Consensus 253 ~~~~-g~~~~A~~~~~~m~~~ 272 (729)
+.+. |++++|.+.+++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666666654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.7e-05 Score=79.48 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=17.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 460 VNGSCKMGNLSMAREFFNEMLRKG 483 (729)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~g 483 (729)
...+.+.|++++|++.|.++.+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~ 34 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKD 34 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC
Confidence 445667788888888888777753
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=71.80 Aligned_cols=79 Identities=11% Similarity=0.006 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 004814 628 VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC-THSALLL 706 (729)
Q Consensus 628 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~-~~~~ll~ 706 (729)
...|..+..+|.+.|++++|+..++++++.+ +.+...|..++.+|...|++++|+..|++++ .+.|+.. .....+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al--~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL--RNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH--hcCCCCHHHHHHHHH
Confidence 3567777778888888888888888887764 4456677888888888888888888888887 5566654 4343333
Q ss_pred hhh
Q 004814 707 KQL 709 (729)
Q Consensus 707 ~~l 709 (729)
.+.
T Consensus 140 ~~~ 142 (162)
T 3rkv_A 140 IVT 142 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.1e-05 Score=83.22 Aligned_cols=143 Identities=12% Similarity=-0.052 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhh--hHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGI--LDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
....|..+...+.+.|++++|...|++++...|... .+.... ........+|..++.+|.+.|++++|+..|++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~--~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESK--ASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHH--HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356788899999999999999999999999876520 000000 0000114567777888888888888888888888
Q ss_pred HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALE-LLWEM 269 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m 269 (729)
+..+. +..+|..+..+|...|++++|+..|+++++.. +.+..++..+..++.+.++.++|.+ .+..|
T Consensus 345 ~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 345 GLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76654 66777777778888888888888888877764 4456677777777777777766653 34444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.6e-05 Score=79.79 Aligned_cols=137 Identities=11% Similarity=-0.120 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHH-HhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDV-LIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
..+..+...+.+.|++++|...++++++..+...... .............++..++.+|.+.|++++|+..++++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4578889999999999999999999987432210000 000000001245667777778888888888888888887765
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEAL 263 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 263 (729)
+. +..++..+..+|...|++++|+..|++..+.. +.+...+..+...+.+.++.+++.
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 43 56667777777777777777777777777654 345566666666666666655554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-05 Score=70.24 Aligned_cols=111 Identities=11% Similarity=-0.092 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCC-------CcchHHHHHHHHHHHHcCCCHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLS-------SCVSIKILDLLLLIYTKKSMVEQCLLV 195 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 195 (729)
....+...+..+.+.|++++|...|.+++..-+.... ..... .+....++..++.+|.+.|++++|+..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL----REKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH----TSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3466788899999999999999999999886221000 00000 112456788888888899999999999
Q ss_pred HHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 004814 196 FNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG 238 (729)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 238 (729)
++++++..+. +..+|..+..++...|++++|...|++..+..
T Consensus 86 ~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 86 SSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 9988887654 67778888888888888888888888888764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.6e-05 Score=65.09 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=48.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-
Q 004814 129 TILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD- 207 (729)
Q Consensus 129 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 207 (729)
.++..+...|++++|...+++++...|.. ......+..++.+|.+.|++++|+..|+++++..+...
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNG------------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCC------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc
Confidence 34445555566666666665555544431 01123444555555555555555555555555433210
Q ss_pred -hHhHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 208 -VKNCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 208 -~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
..++..+..++.+.|++++|...|+.+.+
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344455555555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.15 E-value=6.9e-06 Score=68.43 Aligned_cols=86 Identities=12% Similarity=-0.113 Sum_probs=62.1
Q ss_pred hcCChhhHHHHHHHHHhc---cchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHH
Q 004814 136 ESGLLRSAYWVVETVVCV---NMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN 212 (729)
Q Consensus 136 ~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 212 (729)
..|++++|...++++++. +|. +..++..++.+|.+.|++++|+..|+++++..+. +...+.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 65 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD---------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRV 65 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 357788888888888877 343 4667777888888888888888888888877654 566677
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 213 RIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 213 ~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
.+..++.+.|++++|+..|++..+.
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777888888888888888877664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.5e-05 Score=82.64 Aligned_cols=151 Identities=13% Similarity=0.036 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------hhhHHHHHHH
Q 004814 538 SLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT---------------LVTYTVLIHA 602 (729)
Q Consensus 538 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~ 602 (729)
++++|...++...+.. .-....+..+...+.+.|++++|...|+++++.. +.+ ...|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444333321 1135578888889999999999999999998763 223 4788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEA 682 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 682 (729)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|++++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988863 2367788888889999999999999999988853 34556788888888888888877
Q ss_pred H-HHHHHHHHC
Q 004814 683 L-RLYKEMLDR 692 (729)
Q Consensus 683 ~-~~~~~m~~~ 692 (729)
. ..+++|..+
T Consensus 405 ~~~~~~~~f~k 415 (457)
T 1kt0_A 405 DRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHhh
Confidence 6 456666643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.5e-06 Score=92.56 Aligned_cols=86 Identities=13% Similarity=-0.043 Sum_probs=38.8
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEAL 263 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 263 (729)
.+.|++++|++.|+++++..+. +..++..+..++.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444444444444443322 33444444444444444444444444444432 233444444444444444444444
Q ss_pred HHHHHHHh
Q 004814 264 ELLWEMQG 271 (729)
Q Consensus 264 ~~~~~m~~ 271 (729)
+.|++..+
T Consensus 95 ~~~~~al~ 102 (477)
T 1wao_1 95 RDYETVVK 102 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=70.02 Aligned_cols=132 Identities=16% Similarity=0.122 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRKGL-SPT----LVTYTVLIHAHAARGRLELAFMYFSEMQVK----GIRP-NVI 629 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~ 629 (729)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...++++.+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555556666666666666665554310 011 135666677777777777777777776542 1000 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDMEEE----GILP-NKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.+..+...+...|++++|...+++..+. +.++ ...++..+...+...|++++|.+.+++.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777788888888888888877652 1111 123567778888888888888888888763
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=5.4e-06 Score=88.25 Aligned_cols=119 Identities=8% Similarity=-0.014 Sum_probs=78.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRID 645 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 645 (729)
..+.+.|++++|.+.++++++.. +.+..+|..+..+|.+.|++++|++.++++.+.. +.+...+..++.+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34556677777777777777663 4456777777777777777777777777777753 225667777777777778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 004814 646 QAYGLFIDMEEEGILPNKYTYTILINE--NCNAGNWQEALRLYK 687 (729)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 687 (729)
+|.+.++++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888877777753 3334455555544 667777888887777
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=6.9e-05 Score=63.29 Aligned_cols=94 Identities=13% Similarity=-0.067 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh---HhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC---hhhHHHHH
Q 004814 177 DLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDV---KNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS---IVTYNTML 250 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li 250 (729)
..++..+.+.|++++|...|+++.+..+. +. ..+..+..++.+.|++++|...|+++.+.. +.+ ..++..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34566778888888888888888876543 33 466677788888888888888888887754 333 55677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 004814 251 DSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
.++.+.|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888887765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.1e-05 Score=81.06 Aligned_cols=171 Identities=8% Similarity=-0.028 Sum_probs=127.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 004814 537 GSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGD----------LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR 606 (729)
Q Consensus 537 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 606 (729)
...++|++.++++++..+. +..+|+.-..++...|+ ++++++.++.+++.. +.+..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3456778888888876533 55667766666666666 888888888888875 56778888888888888
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-------
Q 004814 607 G--RLELAFMYFSEMQVKGIRPNVITYNALINGLCRLR-RIDQAYGLFIDMEEEGILPNKYTYTILINENCNA------- 676 (729)
Q Consensus 607 g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~------- 676 (729)
| ++++++++++++.+...+ |...|+.-...+.+.| .++++++.++++++.. +-|...|.....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 8 668999999998886533 7778888888888888 8888999988888864 55777888777776663
Q ss_pred -------CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhccchh
Q 004814 677 -------GNWQEALRLYKEMLDREIEPD-YCTHSALLLKQLDKDYK 714 (729)
Q Consensus 677 -------g~~~~A~~~~~~m~~~~~~pd-~~~~~~ll~~~l~~~g~ 714 (729)
+.+++|++.+++++ .+.|+ ...|..+ ...|.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai--~~~P~~~saW~y~-~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAF--FTDPNDQSAWFYH-RWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHH--HHCSSCSHHHHHH-HHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHH--hhCCCCccHHHHH-HHHHhcCCC
Confidence 56899999999998 55664 3445555 667766655
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.5e-05 Score=67.94 Aligned_cols=103 Identities=14% Similarity=-0.064 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
..++..+..++...|++++|...+++++...+.. .+......++..++..|...|++++|...+++..+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---------GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA 79 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh---------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3466777777888888888888888877654321 0000123456667777777777777777777766421
Q ss_pred CC-CC----hHhHHHHHHHHHHCCChhHHHHHHHHHH
Q 004814 204 LL-PD----VKNCNRIIKVLRDNGFSVKAREVYRMMG 235 (729)
Q Consensus 204 ~~-~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~ 235 (729)
.. .+ ...+..+..++...|++++|...+++..
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 80 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 10 01 2234445555555566666655555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00016 Score=76.03 Aligned_cols=166 Identities=11% Similarity=-0.063 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 004814 456 YTIMVNGSCKMGNLSMAREFFNEMLRKGLQ-PDRF----AYTTQIAGELKLGDTSEAYRLQEEMLAK----GFPP-DLIT 525 (729)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~----~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~~-~~~~ 525 (729)
+..++..|.+.|++++|.+.+.++.+.-.. ++.. ..+.+...+...|+.++|..+++..... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344555555666666666655554432100 1111 1111222233455666666666554331 1111 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--hh
Q 004814 526 YNVLVHGLCKLGSLEEANELLRKMVGDG----FIP-DHITYTSIIHASLEMGDLRRGRDLFNNMLRK----GLSPT--LV 594 (729)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~ 594 (729)
+..+...+...|++++|..+++++...- ..+ ...++..++..|...|++++|..++++.... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 5666777777777777777776655321 111 1345666677777777777777777766542 11111 23
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
.+..++..+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555666667777777777666643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-05 Score=69.15 Aligned_cols=95 Identities=13% Similarity=0.009 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVKGIRP------N-----VITYNALINGLCRLRRIDQAYGLFIDMEEE-----GI 659 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~ 659 (729)
+......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344455555666666666666665531110 1 237888888888888888888888888874 11
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 660 LPN-KYTY----TILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 660 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.|+ ...| .....++...|++++|+..|++++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 454 4477 888899999999999999999998
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00019 Score=77.72 Aligned_cols=174 Identities=10% Similarity=-0.021 Sum_probs=133.3
Q ss_pred hcCCh-hhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHCCC
Q 004814 136 ESGLL-RSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSM----------VEQCLLVFNKMLRNGL 204 (729)
Q Consensus 136 ~~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~ 204 (729)
+.|.+ ++|+..+++++..+|. +..+|+.-..++.+.|+ ++++++.++++++..+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~---------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p 104 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD---------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 104 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HcCCCCHHHHHHHHHHHHHCch---------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 34444 6789999999999887 35556655555555566 8999999999999887
Q ss_pred CCChHhHHHHHHHHHHCC--ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 205 LPDVKNCNRIIKVLRDNG--FSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG-EMQEALELLWEMQGRGCSPNGVTY 281 (729)
Q Consensus 205 ~~~~~~~~~ll~~l~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~ 281 (729)
+ +..+|+.-..++.+.+ +++++++.++++.+.. +-|..+|+.-..++.+.| .++++++.++++.+.. +-|..+|
T Consensus 105 K-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW 181 (567)
T 1dce_A 105 K-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 181 (567)
T ss_dssp T-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHH
T ss_pred C-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHH
Confidence 6 8888999999999999 6699999999999977 668889999888888888 8999999999998874 3477888
Q ss_pred HHHHHHHHhC--------------CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCC
Q 004814 282 NVLITGFSRN--------------GELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGL 328 (729)
Q Consensus 282 ~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 328 (729)
+.....+.+. +.++++.+.+++++... +-+..+|+-+...+.+.++
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 8877776653 34566677776666654 3356666666655555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.3e-06 Score=69.70 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=43.5
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 606 RGRLELAFMYFSEMQVKGI--RPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEAL 683 (729)
Q Consensus 606 ~g~~~~A~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 683 (729)
.|++++|+..|+++++.+. +.+...+..++.+|...|++++|+..++++++.. +.+...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 3455555555555555320 1123345555555666666666666666665542 334455555566666666666666
Q ss_pred HHHHHHH
Q 004814 684 RLYKEML 690 (729)
Q Consensus 684 ~~~~~m~ 690 (729)
..+++++
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.02 E-value=5.5e-05 Score=77.37 Aligned_cols=91 Identities=13% Similarity=-0.005 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
+..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666666666777777777777666642 1245566666666777777777777777666642 334555556666
Q ss_pred HHHhcCCHHHHHH
Q 004814 672 ENCNAGNWQEALR 684 (729)
Q Consensus 672 ~~~~~g~~~~A~~ 684 (729)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.00 E-value=2e-05 Score=79.76 Aligned_cols=149 Identities=9% Similarity=-0.063 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
...+..+...+.+.|++++|...|++++...+... .+...|+.+++...+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----------------------~~~~~~~~~~~~~~l~------ 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----------------------MFQLYGKYQDMALAVK------ 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----------------------HHTCCHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----------------------hhhhcccHHHHHHHHH------
Confidence 45577788889999999999999999998876521 0112222333322211
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNV 283 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 283 (729)
...|+.+..+|.+.|++++|+..|++.++.. +.+..+|..+..+|...|++++|...|++..+.. +.+...+..
T Consensus 230 ----~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~ 303 (338)
T 2if4_A 230 ----NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRE 303 (338)
T ss_dssp ----THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 1244555666666666666666666665543 3455566666666666666666666666665431 112333333
Q ss_pred HHHH-HHhCCCHHHHHHHHHHHHhC
Q 004814 284 LITG-FSRNGELEQARGLIRDMLKL 307 (729)
Q Consensus 284 li~~-~~~~g~~~~A~~~~~~m~~~ 307 (729)
+... ....+..+++.+.|..|...
T Consensus 304 L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 304 LRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3333 22334555666666666544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.5e-05 Score=80.75 Aligned_cols=153 Identities=13% Similarity=0.002 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004814 523 LITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHA 602 (729)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 602 (729)
...+..+...+.+.|++++|...|++.++. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455666667777777777777777777664 233221 122233333332221 1367778888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINE-NCNAGNWQE 681 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~ 681 (729)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888753 2367788888888888888888888888887642 2234455555544 334567778
Q ss_pred HHHHHHHHHHCCCCCCH
Q 004814 682 ALRLYKEMLDREIEPDY 698 (729)
Q Consensus 682 A~~~~~~m~~~~~~pd~ 698 (729)
+...|++|+ +..|+.
T Consensus 318 a~~~~~~~l--~~~p~~ 332 (338)
T 2if4_A 318 QKEMYKGIF--KGKDEG 332 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHhh--CCCCCC
Confidence 888888887 555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00021 Score=61.33 Aligned_cols=110 Identities=11% Similarity=0.025 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004814 573 DLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCR----LRRIDQAY 648 (729)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~ 648 (729)
++++|.+.|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22222 5555555566666666666666653 55566666666665 56667777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004814 649 GLFIDMEEEGILPNKYTYTILINENCN----AGNWQEALRLYKEMLDRE 693 (729)
Q Consensus 649 ~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 693 (729)
+.|++..+.| +...+..|...|.. .+++++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777666654 45556666666666 666777777777766543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.92 E-value=9.3e-05 Score=64.03 Aligned_cols=96 Identities=6% Similarity=-0.150 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC------Ch-----HhHHHHHHHHHHCCChhHHHHHHHHHHhC-----
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP------DV-----KNCNRIIKVLRDNGFSVKAREVYRMMGEF----- 237 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----- 237 (729)
..+...+..+.+.|++++|+..|+++++..+.. +. ..|+.+..++.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345566777888999999999999999865431 11 25666666666666666666666666553
Q ss_pred --CCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 238 --GIKPSIVTY----NTMLDSFCKEGEMQEALELLWEMQ 270 (729)
Q Consensus 238 --~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 270 (729)
. +.+...| .....++...|++++|+..|++..
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 2233344 444455555555555555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.7e-05 Score=64.95 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HH
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY------CT 700 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~------~~ 700 (729)
+...+..++..+...|++++|+..|++.++.. +.+...|..+..++.+.|++++|++.+++++ .+.|+. ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL--RYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhCCCccHHHHHHH
Confidence 34456666677777777777777777777653 4456667777777777777777777777777 555553 22
Q ss_pred HHHHHHhhhccchhhc-HHHHHHHh
Q 004814 701 HSALLLKQLDKDYKVH-AVEYLESL 724 (729)
Q Consensus 701 ~~~ll~~~l~~~g~~~-a~~~l~~l 724 (729)
....++.++...|+.+ |.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 2222255555555554 54444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=8.9e-05 Score=78.27 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCC-CC
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQVK-----GI-RPN-VITYNALINGLCRLRRIDQAYGLFIDMEE-----EGI-LP 661 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~-~p 661 (729)
+++.|+.+|...|++++|..+++++++- |. .|+ ..+++.|+..|..+|++++|..+++++.+ .|- .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555555555555555554321 11 111 22455555666666666666666655543 120 01
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 662 N-KYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 662 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
+ ..+...+..++...|++++|...|+++.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11233444555566666666666666653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00084 Score=57.45 Aligned_cols=111 Identities=13% Similarity=-0.068 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHH
Q 004814 537 GSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAA----RGRLELA 612 (729)
Q Consensus 537 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 612 (729)
+++++|.+.|++..+.| .++.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777766 23333 5555666666777777777777654 56666777777776 6777788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 004814 613 FMYFSEMQVKGIRPNVITYNALINGLCR----LRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 613 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 658 (729)
.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88887777764 56667777777777 677888888888777765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=5.4e-05 Score=65.33 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 645 DQAYGLFIDMEEEGILPNKYTYTILINENCNA-----------GNWQEALRLYKEMLDREIEPDYCTHSA 703 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~~~~pd~~~~~~ 703 (729)
++|+..|++.++.+ +.+..+|..+..+|... |++++|++.|++++ .+.|+...|..
T Consensus 63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl--~l~P~~~~y~~ 129 (158)
T 1zu2_A 63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV--DEQPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHH--HhCCCCHHHHH
Confidence 35555555555532 22344555555555544 35666666666666 45555444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00029 Score=54.93 Aligned_cols=83 Identities=14% Similarity=0.054 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+...+..++..|.+.|++++|+..|++.++..+. +...+..+..++.+.|++++|...|++..+.. +.+..++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 4556667777788888888888888888776543 55666677777777777777777777776653 345555665555
Q ss_pred HHHhc
Q 004814 252 SFCKE 256 (729)
Q Consensus 252 ~~~~~ 256 (729)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.71 E-value=3.6e-05 Score=63.00 Aligned_cols=94 Identities=7% Similarity=-0.041 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC------hhhH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS------IVTY 246 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~------~~~~ 246 (729)
...+..++..|.+.|++++|+..|+++++..+. +...+..+..++.+.|++++|+..|++.++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 456777888888999999999999998887654 67778888888888899999998888888764 223 4455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 004814 247 NTMLDSFCKEGEMQEALELLWE 268 (729)
Q Consensus 247 ~~li~~~~~~g~~~~A~~~~~~ 268 (729)
..+..++...|++++|...+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 5566666666665555544433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00061 Score=71.89 Aligned_cols=131 Identities=7% Similarity=-0.065 Sum_probs=81.8
Q ss_pred HHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCC-CC
Q 004814 134 LIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR-----NGLL-PD 207 (729)
Q Consensus 134 l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~ 207 (729)
+...|++++|..++++++..... .-+.+......+++.|+.+|...|++++|..+++++++ .|.. |+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~-------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEP-------VFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTT-------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 55789999999999998875322 01122233567888999999999999999999888764 2322 22
Q ss_pred h-HhHHHHHHHHHHCCChhHHHHHHHHHHh-----CCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004814 208 V-KNCNRIIKVLRDNGFSVKAREVYRMMGE-----FGI--KPSIVTYNTMLDSFCKEGEMQEALELLWEMQG 271 (729)
Q Consensus 208 ~-~~~~~ll~~l~~~g~~~~A~~~~~~~~~-----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (729)
+ .+++.|...|..+|++++|..+|++..+ .|. +....+.+.+..++...|.+++|..+|.++++
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3366677777777777777777766543 121 11122334444555555555666555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00028 Score=58.20 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
...+..++.+|...|++++|+..|+++++..+. +...+..+..++...|++++|...|++..+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555555555555555554332 344444455555555555555555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00036 Score=54.37 Aligned_cols=83 Identities=8% Similarity=0.030 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+..+..++...|++++|...+++++..+|. +..++..++.+|.+.|++++|+..|+++.+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4677888999999999999999999999988765 4667888999999999999999999999987
Q ss_pred CCCCChHhHHHHHHHHHHC
Q 004814 203 GLLPDVKNCNRIIKVLRDN 221 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~ 221 (729)
.+. +...+..+..++.+.
T Consensus 73 ~p~-~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 73 DPN-NAEAKQNLGNAKQKQ 90 (91)
T ss_dssp CTT-CHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHhc
Confidence 654 566677777666554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00019 Score=59.18 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 612 AFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 612 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
|+..|+++.+.. +.+...+..++..|...|++++|+..+++.++.. +.+...|..+..++...|++++|...|++++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555432 1244555556666666666666666666665542 3344455566666666666666666666655
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00019 Score=61.98 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=76.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCCh----------hHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFS----------VKAREVYRMMGEFGIKPSIVTYNTMLDSF 253 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (729)
.+.+.+++|++.+++.++..+. +...|+.+..++.+.+++ ++|+..|++.++.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3556789999999999998876 888899888899888765 48999999988875 55677888888888
Q ss_pred HhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004814 254 CKEG-----------EMQEALELLWEMQGRGCSPNGVTYNVLI 285 (729)
Q Consensus 254 ~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~li 285 (729)
...| ++++|++.|++..+. .|+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 8764 788888888888775 56655554333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00041 Score=55.50 Aligned_cols=63 Identities=19% Similarity=0.129 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+...+..++.+|...|++++|+..|+++++.+ +.+...|..+..+|...|++++|++.|++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555566666666666666655543 3334455555566666666666666666555
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00062 Score=54.41 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.+..++..++.++...|++++|...|+++++.+|. +..+|..++.+|.+.|++++|+..|++.++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD---------------YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777777777777777777777777776665 344666677777777777777777777665
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0031 Score=62.56 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 625 RPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 625 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
+.++.+|..+...+...|++++|...++++++.+ |+...|..+...+.-.|++++|.+.|++++ .+.|...++..+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al--rL~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF--NLRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCcChHHHH
Confidence 4577788888777777899999999999999864 787788888888999999999999999998 678887776555
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0051 Score=48.06 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 626 PNVITYNALINGLCRLRR---IDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 626 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
.|+..+..+..++...++ .++|..++++.++.+ +.+......++..+.+.|++++|+..|++++ ...|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l--~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLL--DSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCC
Confidence 456666666666654444 577777777777754 4455667777777777777777777777777 34444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0092 Score=59.20 Aligned_cols=74 Identities=9% Similarity=0.017 Sum_probs=60.9
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004814 590 SPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYT 667 (729)
Q Consensus 590 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 667 (729)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|+.++|.+.++++... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5677788888777777899999999999998864 78778888888899999999999999988884 57766654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0061 Score=63.13 Aligned_cols=61 Identities=8% Similarity=-0.103 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDMEE-----EG-ILPNK-YTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+++.|+.+|...|++++|..+++++++ .| -.|+. .+++.|+..|..+|++++|+.++++++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344555555555555555555555443 11 01111 245555555555666666665555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0024 Score=50.55 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=41.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVK-NCNRIIKVLRDNGFSVKAREVYRMMGEFG 238 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 238 (729)
.+..|.+.|++++|+..|+++++..+. +.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566777788888888877776543 455 66677777777777777777777777654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.29 Score=46.50 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhC-CCHH
Q 004814 260 QEALELLWEMQGRGCSPN---GVTYNVLITGFSRN-----GELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEK-GLLV 330 (729)
Q Consensus 260 ~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~ 330 (729)
..|...+++..+. .|+ ...|..+...|.+. |+.++|++.|++.++.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444445554443 333 33455555555552 55555555555555543222344444455555542 5555
Q ss_pred HHHHHHHHHHHCCC
Q 004814 331 EALNLEEEMVTRGV 344 (729)
Q Consensus 331 ~A~~~~~~m~~~g~ 344 (729)
+|.+.+++.+...+
T Consensus 258 ~a~~~L~kAL~a~p 271 (301)
T 3u64_A 258 GFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHcCCC
Confidence 55555555555433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0083 Score=46.82 Aligned_cols=70 Identities=7% Similarity=-0.083 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGL---LRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFN 197 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~---~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 197 (729)
+.|+..+..+..++...+. .++|..+++++++.+|. +++....++..+.+.|++++|+..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---------------~~rA~~~lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---------------NEAALSLIANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777777764443 57788888888877776 46666677777777777777777777
Q ss_pred HHHHCCCC
Q 004814 198 KMLRNGLL 205 (729)
Q Consensus 198 ~~~~~~~~ 205 (729)
++++..+.
T Consensus 68 ~~l~~~p~ 75 (93)
T 3bee_A 68 LLLDSNDP 75 (93)
T ss_dssp HHHTCCCT
T ss_pred HHHhhCCC
Confidence 77776543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0057 Score=63.44 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=27.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004814 565 IHASLEMGDLRRGRDLFNNMLRKG---LSPT----LVTYTVLIHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (729)
+..+.+.|++++|.+++++.++.. +.|+ ..+++.++.+|...|++++|+.++++++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 344455566666666666655431 1111 2344445555555555555555555443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.23 Score=47.17 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh-cC
Q 004814 609 LELAFMYFSEMQVKGIRPN---VITYNALINGLCRL-----RRIDQAYGLFIDMEEEGILP--NKYTYTILINENCN-AG 677 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~-~g 677 (729)
..+|...++++++. .|+ ...|..++..|.+. |+.++|.+.|++.++. .| +..++....+.++. .|
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 57788888888884 566 55788888888884 9999999999999995 45 36788888888888 49
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHH
Q 004814 678 NWQEALRLYKEMLDREIE--PDYC 699 (729)
Q Consensus 678 ~~~~A~~~~~~m~~~~~~--pd~~ 699 (729)
+.++|.+.+++.+..... |+..
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChh
Confidence 999999999999966555 5543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.012 Score=50.15 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 004814 609 LELAFMYFSEMQVKGIRPNVITYNALINGLCRLR---RIDQAYGLFIDMEEEGILP--NKYTYTILINENCNAGNWQEAL 683 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~ 683 (729)
...+.+.|.+..+.|. ++..+...+.+++++.+ ++++++.++++..+.+ .| +...+..+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455566666666554 57777777788888877 5668888888887764 24 3445666777778888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHH
Q 004814 684 RLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 684 ~~~~~m~~~~~~pd~~~~~~l 704 (729)
+.++.++ .++|+..-...+
T Consensus 92 ~y~~~lL--~ieP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLL--QTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHH--HHCTTCHHHHHH
T ss_pred HHHHHHH--hcCCCCHHHHHH
Confidence 8888888 667765443333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0037 Score=64.76 Aligned_cols=85 Identities=9% Similarity=-0.088 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHH
Q 004814 572 GDLRRGRDLFNNMLRK---GLSPT----LVTYTVLIHAHAARGRLELAFMYFSEMQVK-----GI-RPN-VITYNALING 637 (729)
Q Consensus 572 g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~p~-~~~~~~l~~~ 637 (729)
|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.+++++++- |. .|+ ..+++.|+..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554432 11111 345666666677777777777666666532 21 122 3356777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004814 638 LCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~ 656 (729)
|..+|++++|..+++++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777777654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0067 Score=47.88 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=34.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVKGIRPNVI-TYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
.+..+...|++++|+..++++.+.. +.+.. .+..++.+|...|++++|...|++.++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445556666666666666666542 12444 5666666666666666666666666664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.46 E-value=6e-07 Score=89.98 Aligned_cols=268 Identities=12% Similarity=0.089 Sum_probs=169.0
Q ss_pred cchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 170 CVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 170 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
+..+.+|..|+.++.+.|++.+|++.|-+.. |+..|..++.+..+.|.+++-++++....+. ..++..=+.|
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteL 122 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETEL 122 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHH
Confidence 4457788899999999999999987764332 5556778899999999999998888777654 3345556788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCH
Q 004814 250 LDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLL 329 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 329 (729)
+-+|++.++..+-.+++ ..||..-...+..-|...|.++.|.-+|..+. -|..|...+.+.|++
T Consensus 123 i~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~y 186 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGG
T ss_pred HHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHH
Confidence 88999988876543332 24677667778888888998888877775432 244455556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 330 VEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDEL 409 (729)
Q Consensus 330 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 409 (729)
..|.+.-++ ..++.||..+-.+|...+++.-|.-.--.++-. ..-...++..|-..|.+++-+.+++.-
T Consensus 187 q~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 666554322 236677777777888777776665443333321 111223455677777777777777765
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------CCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 410 RSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ-GIL------PDVITYTIMVNGSCKMGNLSMARE 474 (729)
Q Consensus 410 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~A~~ 474 (729)
.... ......|+-|.-.|++-. +++..+.++....+ +++ -....|.-++-.|++..++|.|..
T Consensus 256 lglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 256 LGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5321 335566666666666543 34444433322111 211 123445666666666666665543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.011 Score=61.43 Aligned_cols=86 Identities=9% Similarity=0.041 Sum_probs=39.8
Q ss_pred HcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC-CCCCH-HHHHHHH
Q 004814 605 ARGRLELAFMYFSEMQVK---GIRPN----VITYNALINGLCRLRRIDQAYGLFIDMEE-----EG-ILPNK-YTYTILI 670 (729)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~l~ 670 (729)
.+|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++++ .| ..|+. .+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 445555555555555432 01111 22445555555555555555555555443 11 01111 2344555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004814 671 NENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 671 ~~~~~~g~~~~A~~~~~~m~ 690 (729)
..|..+|++++|+.++++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 55555555555555555554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.21 Score=56.85 Aligned_cols=103 Identities=16% Similarity=0.059 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 004814 317 NPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRS 396 (729)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 396 (729)
..++..+.+.|..++|+++.+... .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555566666666666665542111 1123344567777776654322 4556677777777777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 397 GNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMIN 446 (729)
Q Consensus 397 g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 446 (729)
|+++.|.+.|.++.. |..+...+...|+.+...++-+....
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777666533 22344444445555554444444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.2 Score=57.06 Aligned_cols=25 Identities=4% Similarity=-0.122 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 314 HSYNPIICGYSEKGLLVEALNLEEE 338 (729)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~ 338 (729)
..|..+...+.+.|+++.|.+.|..
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.95 E-value=2.9 Score=46.92 Aligned_cols=256 Identities=13% Similarity=0.030 Sum_probs=115.4
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
Q 004814 392 GYCRSGNIGEAFLLFDELRSRNLVPTVV--TYNTLIDGLCRYGDLEVAQQLKENMINQGI-------LPDVITYTIMVNG 462 (729)
Q Consensus 392 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~~~ 462 (729)
+....|+.++++.+++.....+-..+.. .-..+.-+....|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3455666667766666544321011222 222223334444544456665555544311 0111222233333
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHhh--HH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHh
Q 004814 463 SCKMGN-LSMAREFFNEMLRKGLQPDRFA--YT--TQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLV--HGLCK 535 (729)
Q Consensus 463 ~~~~g~-~~~A~~~~~~~~~~g~~~~~~~--~~--~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li--~~~~~ 535 (729)
+.-.|. -+++.+.+..++... +... .. ++...+...|+.+....++..+.+.. +......++ -++..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 332332 134455555555431 2111 11 22233445666666666666655431 222222233 33335
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 004814 536 LGSLEEANELLRKMVGDGFIPDHIT--YTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAF 613 (729)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 613 (729)
.|+.+.+..+.+.+.... .|.... -..+.-+|+..|+.....++++.+.+.. ..+..-...+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 667666666666665531 122111 1123344566677666666777666542 222222233333444456666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 004814 614 MYFSEMQVKGIRPNVITYNALINGLCRLRRI-DQAYGLFIDMEE 656 (729)
Q Consensus 614 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 656 (729)
++++.+.+.+ .|....-..+.-+....|+. .+|+..+..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6666555542 33333333333344434433 566677777654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.091 Score=41.83 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
-+..-+..|+..+.+.|++..|...++.+++..+.. .........++..|+.+|.+.|++++|+..++++++
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~--------~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEG--------EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhcc--------CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 467778899999999999999999999998764221 001123578889999999999999999999999998
Q ss_pred CCCC
Q 004814 202 NGLL 205 (729)
Q Consensus 202 ~~~~ 205 (729)
..+.
T Consensus 75 l~P~ 78 (104)
T 2v5f_A 75 LDPE 78 (104)
T ss_dssp HCTT
T ss_pred cCCC
Confidence 6544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.041 Score=43.94 Aligned_cols=59 Identities=14% Similarity=-0.014 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 632 NALINGLCRLRRIDQAYGLFIDMEEEG------ILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 632 ~~l~~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
..++..+...|+++.|...++++.+.- -.+...++..+..++.+.|++++|+.++++++
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344444444444444444444443310 01123344445555555555555555555554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.65 Score=37.97 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 526 YNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL 589 (729)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 589 (729)
....++.+...|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334455555666666666666664432 245566666666666666666666666666666653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.067 Score=45.49 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 004814 574 LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG---RLELAFMYFSEMQVKGIRP--NVITYNALINGLCRLRRIDQAY 648 (729)
Q Consensus 574 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~ 648 (729)
+..+.+-|.+....+ +++..+...+..++++.+ +.++++.++++..+.. .| +...+..+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344455555555544 356666666666666666 4556777777666643 13 2344555556667777777777
Q ss_pred HHHHHHHHc
Q 004814 649 GLFIDMEEE 657 (729)
Q Consensus 649 ~~~~~m~~~ 657 (729)
++++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777763
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.33 Score=42.38 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=54.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 004814 533 LCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELA 612 (729)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 612 (729)
..+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666665543 2556666666666666666666666655432 23333445555665555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 613 FMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFI 652 (729)
Q Consensus 613 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 652 (729)
.++-+.....| + ++.....+...|+++++++++.
T Consensus 80 ~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHH
Confidence 55544444433 1 2344444555666666666663
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.27 E-value=1 Score=36.90 Aligned_cols=139 Identities=13% Similarity=0.022 Sum_probs=86.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 004814 535 KLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFM 614 (729)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 614 (729)
-.|..++..++..+..+.. +..-||-++--....-+-+-..++++.+-+. -|. ..+|+......
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 3456666666666655531 3333444443333344444444444443322 111 13444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 615 YFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREI 694 (729)
Q Consensus 615 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 694 (729)
.+-.+- -+....+..++.+..+|+-|+-.+++.++... .+|++.....+..+|.+-|+..+|.++++++-++|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 444332 24455677778888999999988888886543 478888899999999999999999999999988887
Q ss_pred C
Q 004814 695 E 695 (729)
Q Consensus 695 ~ 695 (729)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.093 Score=42.87 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 004814 608 RLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQ---AYGLFIDMEEEGILP--NKYTYTILINENCNAGNWQEA 682 (729)
Q Consensus 608 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 682 (729)
....+.+-|.+....|. ++..+--.+.+++.+..+..+ ++.++++....+ .| .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555555443 667777777778888776655 777777777653 23 233455666778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHH
Q 004814 683 LRLYKEMLDREIEPDYCTH 701 (729)
Q Consensus 683 ~~~~~~m~~~~~~pd~~~~ 701 (729)
++.++.++ .+.|+..-.
T Consensus 94 ~~~~~~lL--~~eP~n~QA 110 (126)
T 1nzn_A 94 LKYVRGLL--QTEPQNNQA 110 (126)
T ss_dssp HHHHHHHH--HHCTTCHHH
T ss_pred HHHHHHHH--HhCCCCHHH
Confidence 88888888 566755433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.81 E-value=1.9 Score=37.64 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=9.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHH
Q 004814 315 SYNPIICGYSEKGLLVEALNLEE 337 (729)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~ 337 (729)
.|..|.......|+++-|.+.|.
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 33333333333333333333333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.27 Score=41.22 Aligned_cols=105 Identities=11% Similarity=0.093 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH-HHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 004814 520 PPDLITYNVLVHGLCKLGSL------EEANELLRKMVGDGFIPDHI-TYTSIIH------ASLEMGDLRRGRDLFNNMLR 586 (729)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 586 (729)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...+. .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44666666666666666666 6666777766654 233311 1111111 11233566677777776655
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004814 587 KGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP 626 (729)
Q Consensus 587 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 626 (729)
.+ +.=..+|.....--.++|+...|.+++.+.+..+.+|
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 42 2225555555555556677777777777766665443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.73 Score=38.61 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 641 LRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEP 696 (729)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 696 (729)
.++.++|.++|+.++..+ +-=...|.....--.++|+...|.+++.+++..+.+|
T Consensus 73 i~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 367777777777776532 1115566666666677888888888888888444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.31 E-value=13 Score=41.83 Aligned_cols=259 Identities=12% Similarity=0.042 Sum_probs=132.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHhhHHHHHHH
Q 004814 427 GLCRYGDLEVAQQLKENMINQG--ILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGL-------QPDRFAYTTQIAG 497 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-------~~~~~~~~~li~~ 497 (729)
+....|+.+++..+++..+..+ -.+....-..+.-+....|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4566777777877776655421 112233334444445556665667777766655311 0111112223333
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 498 ELKLGD-TSEAYRLQEEMLAKGFPPDLITYN--VLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDL 574 (729)
Q Consensus 498 ~~~~g~-~~~A~~l~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (729)
+.-.|. -+++.+.+..++...- +...... ++...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 333332 2455666666655421 1111122 23333445677777777777666542 11222223333444567888
Q ss_pred HHHHHHHHHHHHCCCCCChhhH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 575 RRGRDLFNNMLRKGLSPTLVTY--TVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFI 652 (729)
Q Consensus 575 ~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 652 (729)
+.+..+.+.+.... .|....- .++.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888888777642 2222211 23445566778877777788887764 12223233333344555676666667776
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 004814 653 DMEEEGILPNKYTYTILINENCNAGNW-QEALRLYKEML 690 (729)
Q Consensus 653 ~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~ 690 (729)
.+.+.+ .|....-..+.-+....|+. .+|+..+..+.
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 665543 33333333333344444443 67777888776
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.03 E-value=1.3 Score=36.36 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 623 GIRPNVITYNALINGLCRLRRI---DQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 623 g~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
+-.|+..+--.+.+++.+..+. .+++.+++++.+.+..-....+..|.-++.+.|++++|++..+.++ .+.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL--~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--EHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhCCCCH
Confidence 4457777777788888888765 4688888888876511234466777888999999999999999999 7888765
Q ss_pred HHHHH
Q 004814 700 THSAL 704 (729)
Q Consensus 700 ~~~~l 704 (729)
-...+
T Consensus 113 QA~~L 117 (134)
T 3o48_A 113 QVGAL 117 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.94 E-value=1.9 Score=35.76 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 625 RPNVITYNALINGLCRLRRI---DQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 625 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~ 700 (729)
.|+..+--.+.+++.+..+. .+++.+++++...+..-.......|.-++.+.|++++|+++.+.++ .+.|+..-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL--~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--EHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH--hcCCCcHH
Confidence 56777777777888877754 4677788888775421233455566778888888888888888888 66776543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.66 E-value=0.56 Score=38.26 Aligned_cols=83 Identities=17% Similarity=0.089 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 004814 573 DLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLEL---AFMYFSEMQVKGIRP--NVITYNALINGLCRLRRIDQA 647 (729)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 647 (729)
.+..+.+-+.+....| .++..+-..+..++.+...... ++.++++..+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445555555555444 3566666666667776665544 677777766653 12 233445566677778888888
Q ss_pred HHHHHHHHHc
Q 004814 648 YGLFIDMEEE 657 (729)
Q Consensus 648 ~~~~~~m~~~ 657 (729)
.++++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888777774
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.61 E-value=0.00079 Score=67.97 Aligned_cols=246 Identities=12% Similarity=0.108 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
.+..|..++.+..+.++..+|+..|-++ . ++..|..++....+.|.+++-+..+.-.++.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~------------------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~ 112 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--D------------------DPSSYMEVVQAANTSGNWEELVKYLQMARKK 112 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--S------------------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--C------------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4567889999999999888886544221 1 2223555677777888888888887766655
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRG--------- 273 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------- 273 (729)
.- ++..=+.|+-+|++.++..+-.++.. .||..-...+++-|...|.++.|.-+|..+....
T Consensus 113 ~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L 183 (624)
T 3lvg_A 113 AR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 183 (624)
T ss_dssp CC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC
T ss_pred hc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33 33344678889999888766443322 4777777788888888888888877766543210
Q ss_pred -----------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 274 -----------CSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 274 -----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
-.-+..||-.+-.+|...+.+.-|.-.--.++-. +.-...++..|-..|.+++-+.+++.....
T Consensus 184 ~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 184 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 0235667888888888888877665544443321 222335667788889999888888877642
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------CCHhHHHHHHHHHHHcCCHHHHHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRK-NVI------PDIISYNTLLYGYCRSGNIGEAFL 404 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~g~~~~A~~ 404 (729)
-......|+-|.-.|++- +.++-.+.++....+ +++ -....|.-++-.|++-.+++.|..
T Consensus 259 -ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 234677788888888765 344444444332222 221 134568888888888888887654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.28 E-value=9.6 Score=39.29 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=91.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--hhh
Q 004814 527 NVLVHGLCKLGSLEEANELLRKMVGD--GFIPD---HITYTSIIHASLEMGDLRRGRDLFNNMLR----KGLSPT--LVT 595 (729)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~~ 595 (729)
..|...+...|++.+|..++..+... +.... ...+...+..|...+++.+|..++.++.. ...+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45667777778888888887776532 21111 23556667778888888888888877642 221222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVK-GIRPNVITYN----ALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILI 670 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 670 (729)
+...+..+...+++.+|.+.|.++.+. ....|...+. .++.+..-.+...+--.+.........-++...|..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 566677777888888888887777542 0111222221 11111112222222223333333222234566788888
Q ss_pred HHHHhc--CCHHHHHHHHHHHH
Q 004814 671 NENCNA--GNWQEALRLYKEML 690 (729)
Q Consensus 671 ~~~~~~--g~~~~A~~~~~~m~ 690 (729)
.+|... .+|+.+.+.|+..+
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHhchHhhhHHHHHHHHHHh
Confidence 887653 46777777766554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.49 Score=40.54 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=34.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVK-GIRPN-------VITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
-+..+...|.++.|+-+.+.+... +..|+ ..++..+++++...|++..|...|++.++
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345566677777777666664432 11223 12445566677777777777777777643
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.76 E-value=15 Score=35.45 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 451 PDVITYTIMVNGSCKMGNLSMAREFFN 477 (729)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (729)
-++.....+...|.+.|++.+|...|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 367777888888888888888777663
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.20 E-value=22 Score=36.57 Aligned_cols=189 Identities=8% Similarity=0.052 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcC
Q 004814 467 GNLSMAREFFNEMLRK-----GLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGL----CKLG 537 (729)
Q Consensus 467 g~~~~A~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~----~~~g 537 (729)
|+++.|++.+..+.+. +..........++..+...|+++...+.+..+.+.. ..-......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCC
Confidence 6788888877666542 223345567777788888888888877776655442 11122223333322 2222
Q ss_pred CHHHHH--HHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---hhhHHHHHHHHH
Q 004814 538 SLEEAN--ELLRKMVG--DG-FIP---DHITYTSIIHASLEMGDLRRGRDLFNNMLRK--GLSPT---LVTYTVLIHAHA 604 (729)
Q Consensus 538 ~~~~A~--~~~~~~~~--~~-~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 604 (729)
..+... .+.+.... .| +.. .......|...+...|++.+|.+++..+... |..+. ...+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222211 11111100 01 111 1123345666677777777777777776543 21111 235555666677
Q ss_pred HcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 605 ARGRLELAFMYFSEMQV----KGIRPN--VITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 605 ~~g~~~~A~~~~~~~~~----~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
..+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777777777776542 111222 22455666666677777777776666654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.16 E-value=2.4 Score=43.02 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 004814 632 NALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML-----DREIEPDYCT 700 (729)
Q Consensus 632 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~pd~~~ 700 (729)
..++..+...|+.++|+..+..+.... +-+...|..++.++.+.|+..+|++.|+++. +.|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345556666677777776666666543 4455666677777777777777766666653 2366666554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.83 E-value=3.9 Score=44.98 Aligned_cols=53 Identities=19% Similarity=0.102 Sum_probs=34.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
+.|...|+++-|+++.++.+.. .+-+..+|..|..+|...|+|+.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445566777777777777664 2444557777777777777777777666665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.50 E-value=7.9 Score=45.58 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=98.7
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc-cchh-------hhHHHhhcCCCCcchH
Q 004814 102 EKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCV-NMHG-------ILDVLIGGGLSSCVSI 173 (729)
Q Consensus 102 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~-~~~~-------~~~~l~~~~~~~~~~~ 173 (729)
+.++.|..+..|+. .+..+.-.++.++...|++++|...|+++-.. ..+. -+..+.........-.
T Consensus 826 ~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 899 (1139)
T 4fhn_B 826 KQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLS 899 (1139)
T ss_dssp SCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSH
T ss_pred hhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHH
Confidence 56778888888875 35555568899999999999999999876421 1110 0111111111111234
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDV----KNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
..|..++..|-+.|.++.++++...+++....-+. ..|..+.+.+.+.|++++|...+-.+..... -......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 56777888888888888888888877764322222 1466778888888888888888877765432 24456667
Q ss_pred HHHHHhcCCHHH
Q 004814 250 LDSFCKEGEMQE 261 (729)
Q Consensus 250 i~~~~~~g~~~~ 261 (729)
+..+|..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 777776666544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.96 E-value=2 Score=47.30 Aligned_cols=132 Identities=12% Similarity=0.065 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCC-hhHHHHHHHHHHhC------CCCC-C
Q 004814 172 SIKILDLLLLIYTKKSM-VEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGF-SVKAREVYRMMGEF------GIKP-S 242 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~-~~~A~~~~~~~~~~------~~~~-~ 242 (729)
+-.+-+.|+..+...|+ ++.|+.+|+++.+..+.-+......++..+.+.+. --+|.++..+.++. ..++ +
T Consensus 247 ~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 247 NNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp SSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred cHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 33455666666666666 58899999999886533222222223333333322 22455555444321 1111 1
Q ss_pred h----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004814 243 I----------VTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDM 304 (729)
Q Consensus 243 ~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 304 (729)
. ...+.-.+.+...|+++-|+++-++.... .+-+-.+|..|...|...|+++.|+-.+..+
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 11222234455677888888887777765 2334567888888888888888887776665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.25 E-value=9.4 Score=44.96 Aligned_cols=145 Identities=9% Similarity=0.084 Sum_probs=82.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----C---------------
Q 004814 248 TMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKL----G--------------- 308 (729)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--------------- 308 (729)
.++..+.+.+.++-|.++..-. +.+...--.+...|...|++++|.+.|++.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3444555556665555443222 123333334455666666666666666554210 0
Q ss_pred ---CccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 309 ---LKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTL----ATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP 381 (729)
Q Consensus 309 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 381 (729)
...-..-|..++..+.+.|.++.+.++-+...+.....+. ..|..+...+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0001123667777888888888888777666653221121 2467778888888888888888877766443
Q ss_pred CHhHHHHHHHHHHHcCCH
Q 004814 382 DIISYNTLLYGYCRSGNI 399 (729)
Q Consensus 382 ~~~~~~~li~~~~~~g~~ 399 (729)
-......|+..+|..|..
T Consensus 970 r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 244556666666665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.07 E-value=3.9 Score=35.04 Aligned_cols=127 Identities=9% Similarity=0.041 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-C
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL-L 205 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 205 (729)
+-.-+..+...|.|+.|+.+...++...... ........-..++..+++++...|.+..|...|+++++..- -
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~------~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN------PELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------TTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC------cccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 3334555788899999888777655542110 00001112355778899999999999999999999865321 0
Q ss_pred C-ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 206 P-DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 206 ~-~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
+ ...+...+.. ...... ......+...--.+..+|.+.+++++|+.+++.+..+
T Consensus 97 ~k~~s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 97 SKTSKVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hcCCCccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1 1111111100 000000 0011234445555778888899999999988887544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.29 E-value=25 Score=33.93 Aligned_cols=80 Identities=13% Similarity=-0.039 Sum_probs=43.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRL---RRIDQAYGLFIDMEEEGILPNKYTYTI 668 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ 668 (729)
++.....+...|.+.|++.+|...|-.- -.-+...+..++.-+... |...++--++- .+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HH
Confidence 6677778888888888888877765411 111234444444333333 33333222111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004814 669 LINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
++ -|...|+...|..+++...
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHH
Confidence 22 2456778888887777664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.28 E-value=2.8 Score=42.49 Aligned_cols=53 Identities=15% Similarity=0.044 Sum_probs=22.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (729)
..+...|++++|...+..+.... +-+...|..++.++.+.|+..+|++.|++.
T Consensus 179 ~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 179 EAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444444443332 333444444444444444444444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.23 E-value=6.9 Score=32.05 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 556 PDHITYTSIIHASLEMGD---LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 556 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
|+..+--.+..++.+..+ ..+++.+++++.+.+.......+-.|.-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444432 234455555544433101133333444445555555555555555544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.93 E-value=30 Score=33.65 Aligned_cols=133 Identities=11% Similarity=-0.013 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHH----HHHH
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVF----NKML 200 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~ 200 (729)
+.|-++..-|.+.+++++|..++-.... .+.+.|....|.++. +-..
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~-----------------------------~ll~~~Q~~sg~DL~~llvevy~ 86 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ-----------------------------TLLRSGQGGSGGDLAVLLVDTFR 86 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH-----------------------------HHHHCCCcchHHHHHHHHHHHHH
Confidence 4566777778999999999887654322 122223333322222 2223
Q ss_pred HCCCCCChHhHHHHHHHHHHCCCh--------hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNGFS--------VKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g~~--------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
+.+..+|......++..+.....- ++|+++=.+.- ....-++.....+...|.+.+++.+|...|- .
T Consensus 87 ~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l-- 161 (336)
T 3lpz_A 87 QAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L-- 161 (336)
T ss_dssp HHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--
Confidence 344445555555555554443321 12222222211 1123456677778888888888888887772 2
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 004814 273 GCSPNGVTYNVLITGFSRN 291 (729)
Q Consensus 273 ~~~p~~~~~~~li~~~~~~ 291 (729)
|..+....+..++.-+...
T Consensus 162 g~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 162 GTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp SCTTHHHHHHHHHHHHHHT
T ss_pred cCCchHHHHHHHHHHHHHh
Confidence 3333335554444444333
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.75 E-value=30 Score=33.59 Aligned_cols=82 Identities=12% Similarity=0.066 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 450 LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVL 529 (729)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l 529 (729)
.-|+.....+...|.+.+++.+|...|- . |-.+....+..++.-+.+.+...+ .+...-.++
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHH
Confidence 3467777778888888888888877762 1 223333455444433333222111 122222233
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 004814 530 VHGLCKLGSLEEANELLRKMV 550 (729)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~~~ 550 (729)
+ .|...++...|..+++...
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHH
Confidence 3 3445677777777665554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.26 E-value=8.2 Score=29.71 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004814 610 ELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILI 670 (729)
Q Consensus 610 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 670 (729)
-+..+-++.+....+.|++.+..+.+.+|.+.+++.-|+++++-...+ ..+...+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 344444555555555566666666666666666666666666655543 222233444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.59 E-value=46 Score=33.34 Aligned_cols=166 Identities=11% Similarity=-0.043 Sum_probs=85.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CCCC---CHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH-
Q 004814 383 IISYNTLLYGYCRSGNIGEAFLLFDELRSR-NLVP---TVVTYNTLIDGLCRY-GDLEVAQQLKENMINQGILPDVITY- 456 (729)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~~---~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~- 456 (729)
......|...|.+.|+.++..+++...... +..+ .......+++.+... +..+.-.++..+.++.. ..+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456677888899999999888888776432 1111 123345566666543 33344444444443311 0011122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHH
Q 004814 457 -----TIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR-----FAYTTQIAGELKLGDTSEAYRLQEEMLAK--GFPPDLI 524 (729)
Q Consensus 457 -----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~~~ 524 (729)
..++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...++..++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25666777777777777777776653111121 12333345566666666666666655332 1212222
Q ss_pred HHH----HHHHHHH-hcCCHHHHHHHHHHH
Q 004814 525 TYN----VLVHGLC-KLGSLEEANELLRKM 549 (729)
Q Consensus 525 ~~~----~li~~~~-~~g~~~~A~~~~~~~ 549 (729)
... .-...+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 211 1122333 456666666655544
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.58 E-value=12 Score=33.24 Aligned_cols=53 Identities=21% Similarity=0.092 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004814 609 LELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEEGILP 661 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (729)
..++..+|..|..+|+.-. +..|......+...|++++|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555555444332 3344445555555555555555555555544343
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 729 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 6e-05
Identities = 55/368 (14%), Positives = 121/368 (32%), Gaps = 24/368 (6%)
Query: 362 GRVSDARHRFFEMLRKNVIPD-IISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVV- 419
G A ++ R+ PD L + + + + +N P +
Sbjct: 13 GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAE 68
Query: 420 TYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEM 479
Y+ L + G L+ A + + + + + + + +
Sbjct: 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128
Query: 480 LRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSL 539
+ + L + ++A L+ P + ++ L G +
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE---TQPNFAVAWSNLGCVFNAQGEI 185
Query: 540 EEANELLRKMVGDGFIPDHI-TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTV 598
A K V P+ + Y ++ + E R + L V +
Sbjct: 186 WLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN 242
Query: 599 LIHAHAARGRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEE 657
L + +G ++LA + + ++P+ Y L N L + +A + +
Sbjct: 243 LACVYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAEDCY-NTALR 299
Query: 658 GILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT---HSALLLKQLDKDYK 714
+ + L N GN +EA+RLY++ L E+ P++ + A +L+Q K +
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQQGKLQE 357
Query: 715 VHAVEYLE 722
A+ + +
Sbjct: 358 --ALMHYK 363
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 7e-05
Identities = 56/382 (14%), Positives = 118/382 (30%), Gaps = 24/382 (6%)
Query: 323 YSEKGLLVEALNLEEEMVTRGVAPTLA-TYNILIYGLCKWGRVSDARHRFFEMLRKNVIP 381
+ G A ++ + P +L + R+ + H +++N P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--P 64
Query: 382 DIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLK 441
+ + L G + + L P + +
Sbjct: 65 LLAEAYSNL-GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 442 ENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGEL-K 500
Q + + N +G L A+ + + + QP+ + +
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNA 181
Query: 501 LGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHIT 560
G+ A E+ + P L Y L + L + + A + + +
Sbjct: 182 QGEIWLAIHHFEKAVTL-DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVV 239
Query: 561 YTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLV-TYTVLIHAHAARGRLELAFMYFSEM 619
+ ++ E G + D + + L P Y L +A +G + A ++
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297
Query: 620 QVKGIRPNVITYNALINGLCRLRRIDQAYGLF---IDMEEEGILPNKYTYTILINENCNA 676
++ + + N L N I++A L+ +++ E ++ L +
Sbjct: 298 -LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE----FAAAHSNLASVLQQQ 352
Query: 677 GNWQEALRLYKEMLDREIEPDY 698
G QEAL YKE + I P +
Sbjct: 353 GKLQEALMHYKEAI--RISPTF 372
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 12/226 (5%)
Query: 351 YNILIYGLCKWGRVSDARHRFFEMLRKNVIPDII-SYNTLLYGYCRSGNIGEAFLLFDEL 409
++ L G + A H F + + + P+ + +Y L + A +
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 410 RSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPD-VITYTIMVNGSCKMGN 468
S + V + L G +++A I + P Y + N + G+
Sbjct: 230 LSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGS 286
Query: 469 LSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNV 528
++ A + +N LR + + G+ EA RL + L FP ++
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANI-KREQGNIEEAVRLYRKALEV-FPEFAAAHSN 344
Query: 529 LVHGLCKLGSLEEANELLRKMVGDGFIPDHI-TYTSIIHASLEMGD 573
L L + G L+EA ++ + P Y+++ + EM D
Sbjct: 345 LASVLQQQGKLQEALMHYKEAI--RISPTFADAYSNMGNTLKEMQD 388
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.28 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.15 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.14 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.12 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.6 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.57 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.47 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.36 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.31 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.3 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.3 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.17 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.15 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.12 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.09 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.06 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.05 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.0 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.99 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.96 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.93 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.76 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.74 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.72 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.64 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.61 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.57 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.55 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.31 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.0 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.9 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.82 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.4 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.78 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.12 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.74 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.88 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.7 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.1 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.93 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.2e-22 Score=205.42 Aligned_cols=382 Identities=15% Similarity=0.056 Sum_probs=203.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 285 ITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRV 364 (729)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 364 (729)
...+.+.|++++|.+.++++++.. +-+..++..+...|.+.|++++|.+.++++.+..+. +..+|..+...|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 344555666666666666665543 224455555555566666666666666555554322 344555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 365 SDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENM 444 (729)
Q Consensus 365 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 444 (729)
++|.+.+........ .+..............+....+...........
T Consensus 84 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 131 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN------------------------------- 131 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-------------------------------
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccccccc-------------------------------
Confidence 555555555554332 223333333333333333333333333322221
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 445 INQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLI 524 (729)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 524 (729)
.................+....+...+.+...... .+...+..+...+...|++++|...++..++.. |.+..
T Consensus 132 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 204 (388)
T d1w3ba_ 132 -----PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLD 204 (388)
T ss_dssp -----TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred -----cccccccccccccccccchhhhhHHHHHHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHH
Confidence 12222233333333444444444444444443321 123344444444555555555555555544432 33455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004814 525 TYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHA 604 (729)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 604 (729)
.+..+...+...|++++|...+++...... .+...+..+...+.+.|++++|.+.++++++.. +.+..++..+...+.
T Consensus 205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 205 AYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 556666666666666666666666655432 245555566666666666666666666666553 344556666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 605 ARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALR 684 (729)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 684 (729)
..|++++|.+.++..... .+.+...+..++..+.+.|++++|++.+++.++.. +.+..++..++.+|.+.|++++|+.
T Consensus 283 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 667777777766666654 23355566666666777777777777777666542 3344566666677777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHhhhccch
Q 004814 685 LYKEMLDREIEPDYCTHSALLLKQLDKDY 713 (729)
Q Consensus 685 ~~~~m~~~~~~pd~~~~~~ll~~~l~~~g 713 (729)
.|++++ .+.|+......-++.+|.+.|
T Consensus 361 ~~~~al--~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 361 HYKEAI--RISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHH--TTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHH--HhCCCCHHHHHHHHHHHHHcC
Confidence 777766 556654333333255555443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.5e-22 Score=204.20 Aligned_cols=380 Identities=15% Similarity=0.027 Sum_probs=193.7
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004814 183 YTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEA 262 (729)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (729)
+.+.|++++|++.|+++++..+. +..++..+..++.+.|++++|...|+++++.. |.+..+|..++..+.+.|++++|
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccc
Confidence 33444444444444444443322 33344444444444444444444444444332 22334444444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 263 LELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 263 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
+..+....+.. +.+..............+....+........... .................+....+...+......
T Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhcc
Confidence 44444444431 1122222223333333333333333333333222 112233333334444444444554444444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYN 422 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~ 422 (729)
.+. +...+..+...+...|++++|...+.+.+...+ .+...+..+...+...|++++|+..+++....+ +.+...+.
T Consensus 165 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 165 QPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred Ccc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 221 344444555555555555555555555554332 234455555555566666666666665555433 22344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 004814 423 TLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLG 502 (729)
Q Consensus 423 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 502 (729)
.+...+.+.|++++|...++++++.. +.+..++..+...+...|++++|++.++...... +.+...+..+...+.+.|
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCC
Confidence 55566666666666666666666543 3345566666666666666666666666665542 224555556666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004814 503 DTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGD 573 (729)
Q Consensus 503 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (729)
++++|+..+++.++.. |.+..++..+...+.+.|++++|.+.|+++++..+. +...+..+..+|.+.||
T Consensus 320 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 6666666666666542 445666677777777777777777777777765322 45567777777766664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.9e-13 Score=135.22 Aligned_cols=226 Identities=14% Similarity=0.071 Sum_probs=138.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
..+..|.+.|++++|+..|+++++..+. +..+|..++.++...|++++|...|.+..+.. +.+...|..++..+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 4566788999999999999999998765 78889999999999999999999999998865 557888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHH----------------HHHHHHHHhCCCHHHHHHHHHHHHhCCC-ccChhhHHHHH
Q 004814 258 EMQEALELLWEMQGRGCSPNGVTY----------------NVLITGFSRNGELEQARGLIRDMLKLGL-KVSAHSYNPII 320 (729)
Q Consensus 258 ~~~~A~~~~~~m~~~~~~p~~~~~----------------~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li 320 (729)
++++|.+.++++... .|+.... ...+..+...+.+.+|.+.+.+.++... ..+..++..+.
T Consensus 102 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 102 LQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179 (323)
T ss_dssp CHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 999999999998775 2321111 0011122223344444445444443321 12333444444
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 004814 321 CGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIG 400 (729)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 400 (729)
..+...|++++|+..+++.....+. +...|..+...|.+.|++++|.+.|++.++..+ -+..+|..++.+|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCHH
Confidence 4455555555555555554443222 344444444555555555555555554444322 23344444444455555555
Q ss_pred HHHHHHHHH
Q 004814 401 EAFLLFDEL 409 (729)
Q Consensus 401 ~A~~l~~~m 409 (729)
+|+..|++.
T Consensus 258 ~A~~~~~~a 266 (323)
T d1fcha_ 258 EAVEHFLEA 266 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=8.4e-13 Score=131.75 Aligned_cols=244 Identities=13% Similarity=0.022 Sum_probs=131.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 388 TLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMG 467 (729)
Q Consensus 388 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 467 (729)
.....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...+.++++.. +.+...+..++..|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34445556666666666666665543 2244555556666666666666666666665543 334555555666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 468 NLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLR 547 (729)
Q Consensus 468 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 547 (729)
++++|.+.++++.... |+............. ..+.......+..+...+...+|.+.+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 6666666666655542 211110000000000 0000001111122233345566666666
Q ss_pred HHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004814 548 KMVGDGF-IPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP 626 (729)
Q Consensus 548 ~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 626 (729)
+.++..+ ..+..++..+...+...|++++|...+++..... +.+..+|..++..|...|++++|++.|+++++.. +-
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 6554322 2345556666666677777777777777666553 3446666666777777777777777777766642 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
+...+..++.+|.+.|++++|+..|++.++
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666677777777777777777776665
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.3e-10 Score=112.59 Aligned_cols=216 Identities=9% Similarity=0.001 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKS-MVEQCLLVFNKMLRN 202 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 202 (729)
..+|+.+..++.+.+++++|+.+++++++.+|. +..+|.....++...| ++++|+..++++++.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~---------------~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~ 107 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA---------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 107 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC---------------ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 456667777888899999999999999999987 5778888888888876 489999999999998
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYN 282 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 282 (729)
.+. +..+|+.+..++.+.|++++|+..|+++++.. +.+..+|..++..+.+.|++++|++.++++.+.. +.+...|+
T Consensus 108 ~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~ 184 (315)
T d2h6fa1 108 QPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWN 184 (315)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHH
Confidence 766 78889999999999999999999999999876 6678899999999999999999999999998863 33677888
Q ss_pred HHHHHHHhCCC------HHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 004814 283 VLITGFSRNGE------LEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP-TLATYNILI 355 (729)
Q Consensus 283 ~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li 355 (729)
.+...+.+.+. +++|.+.+.++++.. +.+...|+.+...+... ..+++.+.++...+....+ +...+..++
T Consensus 185 ~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~ 262 (315)
T d2h6fa1 185 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLV 262 (315)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHH
Confidence 87777776665 578888888888775 34677777776655443 4567777777766543322 344455555
Q ss_pred HHHH
Q 004814 356 YGLC 359 (729)
Q Consensus 356 ~~~~ 359 (729)
..|.
T Consensus 263 ~~y~ 266 (315)
T d2h6fa1 263 DIYE 266 (315)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=4e-10 Score=110.84 Aligned_cols=217 Identities=10% Similarity=-0.035 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCC-hhHHHHHHHHHHhCCCCCChhhHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGF-SVKAREVYRMMGEFGIKPSIVTYNTML 250 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li 250 (729)
...+++.+..++.+.+++++|++.++++++..+. +..+|+....++...|+ +++|+..++..++.. +-+..+|+.+.
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 3667788888999999999999999999998766 77889999999988775 899999999998876 66788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCC--
Q 004814 251 DSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGL-- 328 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-- 328 (729)
..+.+.|++++|++.++++.+. -+.+...|..+...+.+.|++++|.+.++++++.++ .+..+|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHhhccHHHHHHHHhhhhhh-hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccc
Confidence 9999999999999999999986 244688999999999999999999999999999863 377788887777666555
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHH
Q 004814 329 ----LVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP-DIISYNTLLYGYC 394 (729)
Q Consensus 329 ----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~ 394 (729)
+++|++.+....+..+. +...|+.+...+. ....+++.+.+....+..+.+ +...+..++..|.
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 57788888888776443 6666766655543 444677777777766543222 3344455555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.6e-08 Score=101.09 Aligned_cols=273 Identities=10% Similarity=0.004 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCC-----CCCh
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD----VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGI-----KPSI 243 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~-----~~~~ 243 (729)
.......+.++...|++++|++.+++.++..+..+ ..+++.+..++...|++++|...|++..+... ....
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 44555677888999999999999999988654322 23566778888899999999999988765210 1113
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC----ccC
Q 004814 244 VTYNTMLDSFCKEGEMQEALELLWEMQGR----GCS--PN-GVTYNVLITGFSRNGELEQARGLIRDMLKLGL----KVS 312 (729)
Q Consensus 244 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~ 312 (729)
.++..+...+...|++..|...+.+.... +.. +. ...+..+...+...|+++.+...+........ ...
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 35566677788888888888887765431 111 11 22455566777788888888888877765321 222
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---H
Q 004814 313 AHSYNPIICGYSEKGLLVEALNLEEEMVTR----GVAP--TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPD---I 383 (729)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~ 383 (729)
..++......+...|...++...+.+.... +..+ ....+..+...+...|+.++|...+..........+ .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 251 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 251 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHH
Confidence 334445555666667777776666554431 1110 112334445555566666666666655544322111 2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhh----CCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 384 ISYNTLLYGYCRSGNIGEAFLLFDELRS----RNLVPT-VVTYNTLIDGLCRYGDLEVAQQLKENMI 445 (729)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 445 (729)
..+..+...+...|++++|...+++... .+..|+ ..++..+...+...|++++|.+.+++.+
T Consensus 252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2334455556666666666666655432 122221 2344445555555566666665555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=8.1e-09 Score=103.36 Aligned_cols=265 Identities=14% Similarity=0.079 Sum_probs=149.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHH
Q 004814 427 GLCRYGDLEVAQQLKENMINQGILPD----VITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQ-PD----RFAYTTQIAG 497 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~li~~ 497 (729)
.+...|++++|.+++++.++.....+ ..++..+...+...|++++|+..+++..+.... ++ ...+..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 33444555555555555444321111 123444444555555555555555544432100 01 1223333344
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHH
Q 004814 498 ELKLGDTSEAYRLQEEMLAK----GFPP---DLITYNVLVHGLCKLGSLEEANELLRKMVGDGF----IPDHITYTSIIH 566 (729)
Q Consensus 498 ~~~~g~~~~A~~l~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~ 566 (729)
+...|++..+...+...... +.+. ....+..+...+...|+++.+...+........ ......+.....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 55555655555555544321 1111 123445566677777888888777776664321 122344555566
Q ss_pred HHHhcCCHHHHHHHHHHHHHC--CCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHH
Q 004814 567 ASLEMGDLRRGRDLFNNMLRK--GLSP----TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP---NVITYNALING 637 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~ 637 (729)
.+...++..++...+.+.... .... ....+..+...+...|++++|...+++..+..... ....+..+..+
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 677778888777777665542 1111 12345556666778888888888888776542221 23445667778
Q ss_pred HHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 638 LCRLRRIDQAYGLFIDMEE----EGILPN-KYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
+...|++++|...++++.. .+..|+ ...+..+..+|.+.|++++|++.++++++
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888887764 233333 33677778888888888888888888763
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=6.8e-09 Score=101.79 Aligned_cols=219 Identities=11% Similarity=0.021 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHCCCCCChHhHHHHHHHHHH--------------CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004814 190 EQCLLVFNKMLRNGLLPDVKNCNRIIKVLRD--------------NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK 255 (729)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~--------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (729)
+.+..+|++++..-+. +...|..-+..+.+ .+..++|..+|++.++...+.+...|...+..+.+
T Consensus 33 ~Rv~~vyerAl~~~~~-~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4566677777765433 55555554443322 22345667777777664434455566666677777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHH-HHhCCCHHHHHH
Q 004814 256 EGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICG-YSEKGLLVEALN 334 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~ 334 (729)
.|++++|..+|+++.+.........|...+....+.|+.+.|+++|+++++.+. .+...|...+.. +...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHH
Confidence 777777777777776642222234566666667677777777777777766542 233334333332 233466666777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004814 335 LEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNV-IPD--IISYNTLLYGYCRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 335 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 411 (729)
+|+.+....+ .+...|...+..+.+.|+++.|+.+|++.+.... .|+ ...|...+..-...|+.+.+.++++++.+
T Consensus 191 i~e~~l~~~p-~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 191 IFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7666666422 2455666666666666666666666666665432 121 23555566655566666666666665544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=1e-08 Score=100.55 Aligned_cols=190 Identities=9% Similarity=-0.027 Sum_probs=154.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004814 186 KSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALEL 265 (729)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 265 (729)
.+..++|..+|++.++..+..+...|...+..+.+.|+++.|..+|+++++.........|...+....+.|++++|.++
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 34568899999999976444466778888999999999999999999999865333345789999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 004814 266 LWEMQGRGCSPNGVTYNVLITG-FSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGV 344 (729)
Q Consensus 266 ~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (729)
|+++.+.+ +.+...|...+.. +...|+.+.|..+|+.+++.. +.+...|...+..+.+.|+++.|..+|++......
T Consensus 157 ~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99998873 3344555544443 445689999999999999873 45788999999999999999999999999988643
Q ss_pred -CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 345 -APT--LATYNILIYGLCKWGRVSDARHRFFEMLRK 377 (729)
Q Consensus 345 -~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 377 (729)
.|+ ...|...+..-...|+.+.+.++++++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 332 457888888888999999999999988763
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=2.1e-09 Score=102.61 Aligned_cols=152 Identities=10% Similarity=-0.057 Sum_probs=109.9
Q ss_pred hHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHH
Q 004814 104 PRIALRFFRWVETQPGVKR--DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLL 181 (729)
Q Consensus 104 ~~~al~~f~~~~~~~~~~~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 181 (729)
.+.|+.-++.+.......+ ...+|..++.++.+.|++++|...|+++++.+|+ ++.++..++.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~---------------~~~a~~~lg~ 79 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---------------MPEVFNYLGI 79 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---------------CHHHHhhhch
Confidence 3456666666654433222 3457778888889999999999999999988876 5777888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004814 182 IYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQE 261 (729)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (729)
+|.+.|++++|+..|+++++..+. +..++..+..++...|++++|...|+..++.. +.+......+...+.+.+..+.
T Consensus 80 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~ 157 (259)
T d1xnfa_ 80 YLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQA 157 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999887654 66778888888888888999988888887764 3445554444555555565555
Q ss_pred HHHHHHHHHhC
Q 004814 262 ALELLWEMQGR 272 (729)
Q Consensus 262 A~~~~~~m~~~ 272 (729)
+..+.......
T Consensus 158 ~~~~~~~~~~~ 168 (259)
T d1xnfa_ 158 KEVLKQHFEKS 168 (259)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHhhcc
Confidence 55555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1e-09 Score=104.80 Aligned_cols=199 Identities=13% Similarity=-0.033 Sum_probs=122.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004814 490 AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASL 569 (729)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 569 (729)
++..+..+|.+.|++++|+..|++.++.. |.+..+|..+..++.+.|++++|++.|+++++..+. +..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 44455566677777777777777776653 556777778888888888888888888888776432 4556777777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----HH
Q 004814 570 EMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRR----ID 645 (729)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~----~~ 645 (729)
..|++++|.+.++..++.. +.+......+..++.+.+..+.+..+........ ++...++ ++..+..... .+
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence 8888888888888877764 3444444444555555665555555555555432 2221222 2222211111 22
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 646 QAYGLFIDMEEEGILPN-KYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 646 ~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
.+...+...... .|+ ..+|..++..+...|++++|++.|++++ ...|+.
T Consensus 193 ~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~ 242 (259)
T d1xnfa_ 193 RLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAV--ANNVHN 242 (259)
T ss_dssp HHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TTCCTT
T ss_pred HHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HcCCCC
Confidence 222222221111 122 2366778888999999999999999998 667764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=3.8e-10 Score=112.58 Aligned_cols=258 Identities=10% Similarity=-0.056 Sum_probs=119.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHH----------CCChhHHHHHHHHHHhCCCCCChhhHH
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRD----------NGFSVKAREVYRMMGEFGIKPSIVTYN 247 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~ 247 (729)
.+.....+.+..++|+++++++++..|. +...|+..-..+.. .|++++|+.+++...+.. +.+...|.
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 3344444555568888888888886644 44455543333222 233455666666655543 33455555
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 004814 248 TMLDSFCKEG--EMQEALELLWEMQGRGCSPNGVTYN-VLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324 (729)
Q Consensus 248 ~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 324 (729)
.+..++...+ ++++|...+.++.+.. +++...+. .....+...|..++|...++++++.++ -+..+|+.+...+.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 5555554443 3556666666655541 22333332 223444455556666666655555542 24555555555555
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 004814 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFL 404 (729)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 404 (729)
..|++++|...+...... .. ........+...+..+++...+.......+ ++...+..++..+...|+.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV----LL-KELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH----HH-HHHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh----HH-HHHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHH
Confidence 555555444333222221 00 011122223333444444444444443332 233333333444444444444444
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 405 LFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMIN 446 (729)
Q Consensus 405 l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 446 (729)
.+.+....+ +.+..++..+..++...|+.++|.+.++++++
T Consensus 264 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 264 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444443332 11223334444444444444444444444444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=2.2e-10 Score=114.30 Aligned_cols=233 Identities=8% Similarity=-0.022 Sum_probs=144.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHH
Q 004814 466 MGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLG--DTSEAYRLQEEMLAKGFPPDLITYN-VLVHGLCKLGSLEEA 542 (729)
Q Consensus 466 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A 542 (729)
.|.+++|+..++.+++...+ +...+..+..++...+ +.++|+..++.+++.. +++...+. .....+...+..++|
T Consensus 86 ~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 34466777777777665322 4445555554544443 4677777777776653 44455543 344566667778888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 543 NELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 543 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
+..++++++..+. +...|..+...+.+.|++++|...++...+.. |+ ...+...+...+..+++...+......
T Consensus 164 l~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 8888777776543 66777777777777777777655554443321 11 112233345556667777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004814 623 GIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHS 702 (729)
Q Consensus 623 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~ 702 (729)
. +++...+..++..+...|+.++|...+.+..+.. +.+..+|..++.++...|++++|++.+++++ .+.|+...|.
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai--~ldP~~~~y~ 313 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLK--AVDPMRAAYL 313 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH--HHCGGGHHHH
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHCcccHHHH
Confidence 3 2344455666667777788888888887776642 2344567777888888888888888888887 5677644433
Q ss_pred HHHHhhhc
Q 004814 703 ALLLKQLD 710 (729)
Q Consensus 703 ~ll~~~l~ 710 (729)
.-|...+.
T Consensus 314 ~~L~~~~~ 321 (334)
T d1dcea1 314 DDLRSKFL 321 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33244443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=4.2e-07 Score=73.81 Aligned_cols=102 Identities=16% Similarity=0.048 Sum_probs=79.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGN 678 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 678 (729)
-+..+.+.|++++|+.+|+++++.. +-+...|..++.+|.+.|++++|+..++++++.+ +.+...|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 3566778888888888888888763 3366778888888888888888888888888864 5677788888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 679 WQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 679 ~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
+++|+..|++.+ .+.|+.......
T Consensus 87 ~~~A~~~~~~a~--~~~p~~~~~~~~ 110 (117)
T d1elwa_ 87 FEEAKRTYEEGL--KHEANNPQLKEG 110 (117)
T ss_dssp HHHHHHHHHHHH--TTCTTCHHHHHH
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHH
Confidence 888888888888 677766544443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=4.5e-07 Score=73.64 Aligned_cols=91 Identities=13% Similarity=-0.042 Sum_probs=44.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHh
Q 004814 131 LEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKN 210 (729)
Q Consensus 131 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 210 (729)
++.+.+.|++++|...|+++++.+|. +..+|..++.+|.+.|++++|+..+.++++.++. +...
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 73 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH---------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKG 73 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc---------------chhhhhcccccccccccccccchhhhhHHHhccc-hhhH
Confidence 34444455555555555555554443 3444444555555555555555555555544433 4444
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 211 CNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 211 ~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
|..+..++...|++++|+..|++..+.
T Consensus 74 ~~~~g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 74 YSRKAAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 444444555555555555555544443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.63 E-value=5.4e-05 Score=71.26 Aligned_cols=224 Identities=11% Similarity=-0.028 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 454 ITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELK----LGDTSEAYRLQEEMLAKGFPPDLITYNVL 529 (729)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~l 529 (729)
..+..|...+.+.+++++|++.|++..+.| +......+...|.. ..+...|...++.....+ +......+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 344444444555555555555555555543 33334444444443 445555555555555544 33333333
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004814 530 VHGLCK----LGSLEEANELLRKMVGDGFIPDHITYTSIIHASL----EMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIH 601 (729)
Q Consensus 530 i~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 601 (729)
...+.. ..+.+.|...++...+.|.. .....+...+. .......|...+...... .+...+..|..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~ 150 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGS 150 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhh
Confidence 333322 34566666666666665422 22222222222 233455666666665553 35556666666
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004814 602 AHAA----RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCR----LRRIDQAYGLFIDMEEEGILPNKYTYTILINEN 673 (729)
Q Consensus 602 ~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 673 (729)
.|.. ..+...+...++...+.| +......+...|.. ..+.++|+..|++..+.| ++..+..|...|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 6664 445667777777776653 55555566655554 457788888888887766 455666666666
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCC
Q 004814 674 CN----AGNWQEALRLYKEMLDREIE 695 (729)
Q Consensus 674 ~~----~g~~~~A~~~~~~m~~~~~~ 695 (729)
.+ ..+.++|.+.|+++.+.|-.
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 54 33677788888887755543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.1e-06 Score=78.57 Aligned_cols=130 Identities=12% Similarity=-0.008 Sum_probs=100.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
+|+. +..+...|++++|++.|.++. .|+...|..+..++...|++++|++.|++.++.+ +.+...|..+..++.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 4443 556788999999999998753 3677888899999999999999999999999876 667889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCC--------------CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc
Q 004814 255 KEGEMQEALELLWEMQGRGCS--------------PN-GVTYNVLITGFSRNGELEQARGLIRDMLKLGLK 310 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~--------------p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 310 (729)
+.|++++|++.|++....... .+ ..++..+...+.+.|++++|.+.+....+....
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999987653100 01 234555667777888888888888777765433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=1.3e-06 Score=84.14 Aligned_cols=173 Identities=9% Similarity=-0.089 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 004814 126 VFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL 205 (729)
Q Consensus 126 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 205 (729)
.|...+.++...|++++|...|+++....... .+.......|..++.+|.+.|++++|++.+++..+.-..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~---------~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~ 109 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKA---------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH 109 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhh
Confidence 35556778889999999999999988753220 011113567888889999999999999998887653111
Q ss_pred C-----ChHhHHHHHHHHHH-CCChhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004814 206 P-----DVKNCNRIIKVLRD-NGFSVKAREVYRMMGEF----GIKP-SIVTYNTMLDSFCKEGEMQEALELLWEMQGRGC 274 (729)
Q Consensus 206 ~-----~~~~~~~ll~~l~~-~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 274 (729)
. ...++..+...|.. .|++++|+..|++..+. +-++ ...++..+...+.+.|++++|.+.|+++.....
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~ 189 (290)
T d1qqea_ 110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred cccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence 1 12334455555543 57777777777766431 1111 123456667777777777777777777655421
Q ss_pred CCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004814 275 SPNG------VTYNVLITGFSRNGELEQARGLIRDMLKL 307 (729)
Q Consensus 275 ~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 307 (729)
.... ..+...+..+...|+++.|.+.+++..+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred cchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1110 11223334455566677776666666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=7e-07 Score=77.23 Aligned_cols=91 Identities=13% Similarity=-0.049 Sum_probs=51.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM 259 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (729)
+..|.+.|++++|+..|+++++..+. +...|..+..++...|++++|+..|+++++.. +.+..+|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 44455555555555555555555443 45555555555555666666666666555543 34445555556666666666
Q ss_pred HHHHHHHHHHHhC
Q 004814 260 QEALELLWEMQGR 272 (729)
Q Consensus 260 ~~A~~~~~~m~~~ 272 (729)
++|...+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666666555554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=1e-06 Score=84.87 Aligned_cols=134 Identities=11% Similarity=0.016 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-ChHhHHHHHHHHHHCCChhHHHHHHHHHHhC----CC-CCC
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRN----GLLP-DVKNCNRIIKVLRDNGFSVKAREVYRMMGEF----GI-KPS 242 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~~-~~~ 242 (729)
...|...+..|...|++++|.+.|.++.+. +-.+ -..+|+.+..+|.+.|++++|...|++..+. |. ...
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 445666777888888888888888887652 1111 1235666777777777777777777765442 10 001
Q ss_pred hhhHHHHHHHHHh-cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004814 243 IVTYNTMLDSFCK-EGEMQEALELLWEMQGR----GCSPN-GVTYNVLITGFSRNGELEQARGLIRDMLK 306 (729)
Q Consensus 243 ~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (729)
..++..+...|.. .|++++|.+.+++..+. +..+. ..++..+...+...|++++|.+.++++..
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 2234444444433 36666666666554321 11110 12344455555555555555555555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.54 E-value=1.7e-07 Score=84.99 Aligned_cols=99 Identities=13% Similarity=-0.118 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
|+...+...+..+.+.|++++|+..|++++..+|. ++.+|..++.+|.+.|++++|+..|+++++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~---------------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~ 66 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------VAVYYTNRALCYLKMQQPEQALADCRRALE 66 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH
Confidence 56777777788888888888888888888877776 466777788888888888888888888877
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
..+. +..+|..++.+|.+.|++++|+..|+++.+
T Consensus 67 l~p~-~~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 67 LDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp SCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6544 566777778888888888888888877665
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.9e-06 Score=75.70 Aligned_cols=120 Identities=8% Similarity=-0.038 Sum_probs=62.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 004814 532 GLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLEL 611 (729)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 611 (729)
.+...|++++|++.|.++. +|+..+|..+..+|...|++++|.+.|++.++.. +.+...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 3445556666665555431 3445555555666666666666666666665553 3445555556666666666666
Q ss_pred HHHHHHHHHHCCCC--------------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 612 AFMYFSEMQVKGIR--------------PN-VITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 612 A~~~~~~~~~~g~~--------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
|++.|++....... ++ ..++..+..++.+.|++++|.+.+.++.+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666555442100 00 12333444455555555555555555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.53 E-value=0.00015 Score=68.12 Aligned_cols=95 Identities=11% Similarity=-0.085 Sum_probs=46.8
Q ss_pred HhHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 383 IISYNTLLYGYCR----SGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR----YGDLEVAQQLKENMINQGILPDVI 454 (729)
Q Consensus 383 ~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 454 (729)
...+..|...+.. ..+...+...++...+.| +......+...+.. ..+.+.|..+|.+..+.| ++.
T Consensus 142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~ 215 (265)
T d1ouva_ 142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 215 (265)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred cchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHH
Confidence 3344444444443 233444445555444443 33344444444433 345666666666666654 344
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004814 455 TYTIMVNGSCK----MGNLSMAREFFNEMLRKG 483 (729)
Q Consensus 455 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 483 (729)
.+..|...|.+ ..+.++|.+.|++..+.|
T Consensus 216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 55555555543 225556666666665554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=2.9e-06 Score=73.19 Aligned_cols=92 Identities=8% Similarity=0.005 Sum_probs=62.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRR 643 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 643 (729)
....|.+.|++++|...|+++++.. +.+...|..+..+|...|++++|...|+++++.. +-+...|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 3445667777777777777777664 4556667777777777777777777777776643 2245567777777777777
Q ss_pred HHHHHHHHHHHHHc
Q 004814 644 IDQAYGLFIDMEEE 657 (729)
Q Consensus 644 ~~~A~~~~~~m~~~ 657 (729)
+++|...+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777777764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=7.9e-07 Score=80.34 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 004814 521 PDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLI 600 (729)
Q Consensus 521 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 600 (729)
|+...+......+.+.|++++|+..|+++++..+ .+...|..+..+|.+.|++++|...|+++++.. +.+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 5566666677777777888888888877776653 366677777777777888888888877777653 34566777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 004814 601 HAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~ 621 (729)
.+|...|++++|+..|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777888888777777765
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=5.2e-06 Score=72.32 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQL 709 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l 709 (729)
+|+.+..+|.+.|++++|+..+++.++.+ |.+..+|..++.+|...|++++|+..|++++ .+.|+.......+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al--~l~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVL--QLYPNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH
Confidence 46667777888888888888888888764 4467778888888888888888888888887 56665555554444444
Q ss_pred cc
Q 004814 710 DK 711 (729)
Q Consensus 710 ~~ 711 (729)
.+
T Consensus 141 ~~ 142 (170)
T d1p5qa1 141 QR 142 (170)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.1e-06 Score=71.56 Aligned_cols=104 Identities=16% Similarity=0.126 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 004814 598 VLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRI---DQAYGLFIDMEEEGILPNK-YTYTILINEN 673 (729)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~ 673 (729)
.+++.+...+++++|.+.|++....+ +.+..++..++.++.+.++. ++|+.+++++.+.+..|+. .+|..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45566666677777777777776653 23556666666666654433 4577777776654322221 2566677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 674 CNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 674 ~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
.+.|++++|++.|++++ .+.|+......+
T Consensus 83 ~~~g~~~~A~~~~~~aL--~~~P~~~~A~~l 111 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLL--QTEPQNNQAKEL 111 (122)
T ss_dssp HHTTCHHHHHHHHHHHH--HHCTTCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH--HhCcCCHHHHHH
Confidence 77777777777777777 456665544444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.30 E-value=1.9e-06 Score=69.16 Aligned_cols=90 Identities=13% Similarity=-0.008 Sum_probs=71.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
.++..+.+.|++++|+..|+++++..+. +..+|..+..++.+.|++++|+..|++.++.. |.+..+|..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 3566777888888888888888887655 67778888888888888888888888887765 556778888888888888
Q ss_pred CHHHHHHHHHHH
Q 004814 258 EMQEALELLWEM 269 (729)
Q Consensus 258 ~~~~A~~~~~~m 269 (729)
++++|.+.|++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 888888888765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.30 E-value=2.2e-06 Score=68.68 Aligned_cols=92 Identities=11% Similarity=-0.060 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 004814 128 CTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD 207 (729)
Q Consensus 128 ~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 207 (729)
-.++..+.+.|++++|...+++++..+|. +...|..++.+|.+.|++++|+..|+++++..+. +
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 83 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPE---------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-D 83 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccc---------------cchhhhhhhhhhhhhhhHHHhhcccccccccccc-c
Confidence 34677899999999999999999999887 5788999999999999999999999999998765 7
Q ss_pred hHhHHHHHHHHHHCCChhHHHHHHHHHH
Q 004814 208 VKNCNRIIKVLRDNGFSVKAREVYRMMG 235 (729)
Q Consensus 208 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~ 235 (729)
..++..+..+|...|++++|.+.+++.+
T Consensus 84 ~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 84 IAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 8889999999999999999999998864
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=5.1e-06 Score=67.39 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGR---LELAFMYFSEMQVKGIRPN-VITYNALING 637 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 637 (729)
..+++.+...+++++|.+.|++.+..+ +.+..++..+..++.+.++ +++|+.+++++...+..|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356667777788888888888888775 5677777778887776444 4568888888776543333 2356777888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004814 638 LCRLRRIDQAYGLFIDMEEEGILPNKY 664 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (729)
|.+.|++++|++.|+++++. .|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 88888888888888888874 45433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=9e-06 Score=70.73 Aligned_cols=124 Identities=10% Similarity=-0.065 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhh--hHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGI--LDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
..+...+..+.+.|++++|...|.+++...+... .+.... ........++..++.+|.+.|++++|+..++++++.
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~--~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~ 91 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ--KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 91 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHh--hhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence 3455667788899999999999999887654310 000000 000012345556677777777777777777777776
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
.+. ++.++..++.++...|++++|...|+...+.. |.|..+...+..+
T Consensus 92 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 92 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC 139 (170)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred ccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 544 66667777777777777777777777776654 3344444444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.12 E-value=2.6e-05 Score=66.31 Aligned_cols=73 Identities=12% Similarity=-0.053 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
.+|..++.+|.+.|++++|++.++++++.+ +.+..+|..++.++...|++++|+..|++.+ .+.|+.......
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al--~l~P~n~~~~~~ 140 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA--SLNPNNLDIRNS 140 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHSTTCHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHH
Confidence 467778889999999999999999999874 5577899999999999999999999999998 667765554444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=0.0047 Score=58.83 Aligned_cols=136 Identities=10% Similarity=0.022 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
+|..--..++..|.+.|.++.|..++..+- -|..++..|.+.++++.|.+++.+.-
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----------------------d~~rl~~~~v~l~~~~~avd~~~k~~- 67 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKAN- 67 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----------------------CHHHHHHHHHTTTCHHHHHHHHHHHT-
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----------------------CHHHHHHHHHhhccHHHHHHHHHHcC-
Confidence 344555567777888888888888875421 24556777888889998888876552
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTY 281 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 281 (729)
+..+|..+...+.+......| .+.......+......++..|-..|.+++...+++..... -.++...+
T Consensus 68 -----~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~ 136 (336)
T d1b89a_ 68 -----STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMF 136 (336)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHH
T ss_pred -----CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHH
Confidence 566788888888877665443 2222223345555667888888889999999888877643 24566778
Q ss_pred HHHHHHHHhCC
Q 004814 282 NVLITGFSRNG 292 (729)
Q Consensus 282 ~~li~~~~~~g 292 (729)
+.++..|++.+
T Consensus 137 ~~L~~lyak~~ 147 (336)
T d1b89a_ 137 TELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhC
Confidence 88888888765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.06 E-value=2.7e-05 Score=67.41 Aligned_cols=127 Identities=11% Similarity=-0.066 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhh--hHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGI--LDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
..+...+..+.+.|++.+|...|.+++..-+... ..... .........+|..++.+|.+.|++++|+..++++++.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~--~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKES--KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHH--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhh--hhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 4455677788999999999999988886432210 00000 0000012345556677777777777777777777776
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK 255 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (729)
.+. +..++..+..++...|++++|...|+++++.. |.+..+...+.....+
T Consensus 94 ~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 94 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKK 144 (168)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred ccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 554 66667777777777777777777777777654 4455555544444333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1.1e-06 Score=91.70 Aligned_cols=228 Identities=9% Similarity=-0.051 Sum_probs=127.0
Q ss_pred hHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHHHH
Q 004814 142 SAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDV-KNCNRIIKVLRD 220 (729)
Q Consensus 142 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~l~~ 220 (729)
+|.+.+++++..+|+. ...+..+..+|...|++++| |++++... |+. ...+ +...+.+
T Consensus 4 eA~q~~~qA~~l~p~~---------------a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~-~e~~Lw~ 62 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADM---------------TDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKK-VEQDLWN 62 (497)
T ss_dssp HHHHHHHHHHHHHGGG---------------TCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHT-HHHHHHH
T ss_pred HHHHHHHHHHHcCCCC---------------HHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHh-HHHHHHH
Confidence 6888999999887762 11222344556667777766 67776643 211 1111 1111111
Q ss_pred CCChhHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004814 221 NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS--FCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQAR 298 (729)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 298 (729)
..+..+.+.++...+..-.++..-....... ....+.++.|+..+...... ..++...+..+...+.+.|+.++|.
T Consensus 63 -~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l-~~~~~~~~~~lg~~~~~~~~~~~A~ 140 (497)
T d1ya0a1 63 -HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV-DLPCRVKSSQLGIISNKQTHTSAIV 140 (497)
T ss_dssp -HHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC------------------------------
T ss_pred -HHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHhHHHHHhCCCHHHHH
Confidence 1245677777777765433333322222212 22345566666555544333 1335566777888888999999998
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 299 GLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKN 378 (729)
Q Consensus 299 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 378 (729)
..++...+.. ...++..+...+...|++++|...|++..+..+. +...|+.|...+...|+..+|...|.+.+...
T Consensus 141 ~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 141 KPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp --CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8887776532 2356778888999999999999999999887544 66889999999999999999999999998876
Q ss_pred CCCCHhHHHHHHHHHHHcC
Q 004814 379 VIPDIISYNTLLYGYCRSG 397 (729)
Q Consensus 379 ~~~~~~~~~~li~~~~~~g 397 (729)
. |-..++..|...+.+..
T Consensus 217 ~-~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 217 F-PFPAASTNLQKALSKAL 234 (497)
T ss_dssp B-CCHHHHHHHHHHHHHHT
T ss_pred C-CCHHHHHHHHHHHHHhh
Confidence 5 77788888887776543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.05 E-value=3.1e-05 Score=67.15 Aligned_cols=123 Identities=11% Similarity=-0.105 Sum_probs=77.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhccchhhhHH-HhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 004814 129 TILEILIESGLLRSAYWVVETVVCVNMHGILDV-LIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD 207 (729)
Q Consensus 129 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 207 (729)
.....+...|++++|+..+.+++...+...... ........+.....+..++.+|.+.|++++|+..+.++++..+. +
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~ 110 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-N 110 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-h
Confidence 456667788889999888888776433210000 00000001124556666777777888888888888888776654 6
Q ss_pred hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004814 208 VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSF 253 (729)
Q Consensus 208 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (729)
+.+|..+..++...|++++|+..|++..+.. +.+..+...+..+.
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 6777777777777777777777777777754 34555555544443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.03 E-value=8.2e-05 Score=64.25 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQL 709 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l 709 (729)
+|..+..+|.+.|++++|+..+++.++.. +.+..+|..++.++...|++++|+..|++++ .+.|+.......+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al--~l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL--EVNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HSCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH
Confidence 45667778888888888888888888864 5667788888888888888888888888888 56776655544434444
Q ss_pred ccch
Q 004814 710 DKDY 713 (729)
Q Consensus 710 ~~~g 713 (729)
.+.+
T Consensus 143 ~~~~ 146 (168)
T d1kt1a1 143 KKAK 146 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=0.0072 Score=57.49 Aligned_cols=130 Identities=16% Similarity=0.224 Sum_probs=61.1
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRN 291 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 291 (729)
..++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+.. +..+|..+...+.+.
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDG 82 (336)
T ss_dssp -----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhC
Confidence 3455556666666666666654432 4455556666666666666554331 344555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 292 GELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWG 362 (729)
Q Consensus 292 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 362 (729)
....-| .+.......++.....++..|-..|.+++...+++..... -..+...++-++..|++.+
T Consensus 83 ~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 83 KEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred cHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 444322 1112222234444455566666666666666666655432 1234455556666665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=2.7e-05 Score=63.89 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHH
Q 004814 597 TVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG--ILPN----KYTYTILI 670 (729)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l~ 670 (729)
-.++..+...|++++|+..|++.++.+. .+...+..+..+|.+.|++++|+..++++++.. .... ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666432 245566666666666666666666666665521 0000 12455566
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004814 671 NENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 671 ~~~~~~g~~~~A~~~~~~m~ 690 (729)
..+...+++++|++.|++.+
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 66666777777777777766
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=5.2e-05 Score=62.04 Aligned_cols=102 Identities=8% Similarity=0.032 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHH
Q 004814 561 YTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIR-PN-----VITYNAL 634 (729)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~-----~~~~~~l 634 (729)
+..+...+.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|+..++++++.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3445666777777777777777777664 456667777777777777777777777776653110 01 2356667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004814 635 INGLCRLRRIDQAYGLFIDMEEEGILPNKYT 665 (729)
Q Consensus 635 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 665 (729)
+..+...+++++|++.|++.... .++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 114 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDV 114 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--CCCHHH
Confidence 77777777888888888777663 344433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=3.9e-06 Score=87.40 Aligned_cols=228 Identities=9% Similarity=-0.119 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 436 VAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEML 515 (729)
Q Consensus 436 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 515 (729)
+|.+.++++.+.. +.....+..+..++...|++++| |++++.. .|+..........+. ...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-HHHHHHHHHHHHHhc
Confidence 5778888887642 22244566677777777777765 6666654 222111111111111 112345566666665
Q ss_pred HCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 004814 516 AKGFPPDLITYNVLVHG--LCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTL 593 (729)
Q Consensus 516 ~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 593 (729)
+....++..-....... ....+.++.|+..+.+..+.. .++...+..+...+.+.|+.++|...++...... ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~ 152 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQ 152 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HH
Confidence 54333332222222111 222344555555554444332 2345566677777778888888887777665432 13
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004814 594 VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINEN 673 (729)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 673 (729)
.++..++..+...|++++|...|+++.+.. +-+...|+.++..+...|+..+|+..|.+.+... +|-..++..|...+
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 466777888888888888888888888753 2245678888888888888888888888888764 56667777777666
Q ss_pred Hhc
Q 004814 674 CNA 676 (729)
Q Consensus 674 ~~~ 676 (729)
.+.
T Consensus 231 ~~~ 233 (497)
T d1ya0a1 231 SKA 233 (497)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.93 E-value=2.3e-05 Score=66.61 Aligned_cols=111 Identities=14% Similarity=0.013 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccchh--hhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 126 VFCTILEILIESGLLRSAYWVVETVVCVNMHG--ILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 126 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
.+...+..+.+.|++.+|...+.+++..-+.. ..+..... ........++..++.+|.+.|++++|++.++++++.+
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~ 97 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-hhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence 34455667788899999999998888653321 00000000 0000112345556666666666666666666666655
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG 238 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 238 (729)
+. ++.+|..++.++...|++++|+..|+...+..
T Consensus 98 p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 98 KN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 43 55666666666666666666666666666543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.00017 Score=62.34 Aligned_cols=68 Identities=13% Similarity=-0.001 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
..|..+..++.+.|++++|+..++++++.. +.+...|..++.++...|++++|++.|++++ .+.|+..
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al--~l~p~n~ 145 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQ--EIAPEDK 145 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHH--HhCCCCH
Confidence 345555566666666666666666666543 3345566666666666666666666666666 3445433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.76 E-value=0.00013 Score=63.36 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 004814 126 VFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL 205 (729)
Q Consensus 126 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 205 (729)
+....+..+...|++++|...|.+++...+..++..+.. . +-+...-.++..
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~----~--------------------~w~~~~r~~l~~---- 64 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD----F--------------------QFVEPFATALVE---- 64 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT----S--------------------TTHHHHHHHHHH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc----h--------------------HHHHHHHHHHHH----
Confidence 344566778889999999999999988755432111100 0 000001111111
Q ss_pred CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 004814 206 PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQ-----GRGCSPNGVT 280 (729)
Q Consensus 206 ~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~ 280 (729)
.....+..++..+.+.|++++|+..++++++.. +-+...|..++.++.+.|+.++|++.|+++. +.|+.|...+
T Consensus 65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 022345556666677777777777777776654 5566667777777777777777777776653 2466776554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=0.00046 Score=59.81 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRL 641 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 641 (729)
..........|++++|.+.|.+.+..- +-+.... + ..+.+ +...-..+... ....+..++.++.+.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~-rG~~l~~------~-~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW-RGPVLDD------L-RDFQF--VEPFATALVED----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-CSSTTGG------G-TTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC-ccccccc------C-cchHH--HHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence 334456778899999999999888752 1111000 0 00111 11111111111 234567888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHHHHhhhccc
Q 004814 642 RRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML-----DREIEPDYCTHSALLLKQLDKD 712 (729)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~pd~~~~~~ll~~~l~~~ 712 (729)
|++++|+..++++++.. +-+...|..++.+|.+.|+.++|++.|+++. +.|+.|...+.... -..+...
T Consensus 81 g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~-~~il~~~ 154 (179)
T d2ff4a2 81 GRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN-ERILRQQ 154 (179)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH-HHHHTTC
T ss_pred CCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHH-HHHHhCC
Confidence 99999999999999874 6678899999999999999999999999974 24999987654433 4444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.72 E-value=5e-05 Score=63.67 Aligned_cols=73 Identities=11% Similarity=-0.064 Sum_probs=54.3
Q ss_pred HHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHCC
Q 004814 134 LIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKK----------SMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 134 l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 203 (729)
|-+.+.|++|...++++++.+|+ +..++..+..+|... +.+++|+..|+++++..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~---------------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~ 71 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL---------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID 71 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccHHHHHHHHHHHHhhCCc---------------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 44566799999999999999998 566777777777643 45577888888888776
Q ss_pred CCCChHhHHHHHHHHHHCC
Q 004814 204 LLPDVKNCNRIIKVLRDNG 222 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g 222 (729)
+. +..+|+.+..+|...|
T Consensus 72 P~-~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 72 PK-KDEAVWCIGNAYTSFA 89 (145)
T ss_dssp TT-CHHHHHHHHHHHHHHH
T ss_pred ch-hhHHHhhHHHHHHHcc
Confidence 55 6667777777776554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.64 E-value=8.4e-05 Score=62.24 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=54.2
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHC----------CChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 183 YTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDN----------GFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
|-+.+++++|+..|+++++..|. +..++..+..+|... +.+++|+..|++.++.+ |.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 34566789999999999998766 778888888887654 34567788888777765 5567777777777
Q ss_pred HHhcC
Q 004814 253 FCKEG 257 (729)
Q Consensus 253 ~~~~g 257 (729)
|...|
T Consensus 85 y~~~g 89 (145)
T d1zu2a1 85 YTSFA 89 (145)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 76554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.61 E-value=5.6e-05 Score=70.42 Aligned_cols=124 Identities=11% Similarity=-0.027 Sum_probs=84.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004814 183 YTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEA 262 (729)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (729)
..+.|++++|+..+++.++..+. |...+..+...|+..|++++|.+.|+...+.. +.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 35779999999999999998766 88888889999999999999999999988764 33455555555555444444433
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 004814 263 LELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLG 308 (729)
Q Consensus 263 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 308 (729)
..-.......+.+++...+......+.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3222211111222233444455566777888888888888887653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.57 E-value=3.5e-05 Score=71.88 Aligned_cols=123 Identities=6% Similarity=0.011 Sum_probs=88.8
Q ss_pred HHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 004814 134 LIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNR 213 (729)
Q Consensus 134 l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 213 (729)
..+.|++++|...++++++.+|. +...+..|+..|+..|++++|...|++..+..+. +...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~---------------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~ 69 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK---------------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQ 69 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 45679999999999999999987 6888999999999999999999999999997643 4445555
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 214 IIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 214 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
+...+...+..+++..-+......+-+++...+......+.+.|+.++|.+.++++.+.
T Consensus 70 l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 70 LRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 55555444433333222221111221333445555667788899999999999998775
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.55 E-value=0.0011 Score=56.05 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=57.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC--
Q 004814 601 HAHAARGRLELAFMYFSEMQVKGI-RP----------NVITYNALINGLCRLRRIDQAYGLFIDMEEE-----GILPN-- 662 (729)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~g~-~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-- 662 (729)
..+...|++++|+..|++.++... .| ....|+.+..+|.+.|++++|...+++.++. ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 344455666666666666654210 01 1345677777788888888888777777642 11122
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 663 ---KYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 663 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
...+..++.+|...|++++|+..|++++
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1245667788888888888888888877
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.0012 Score=50.05 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+..++.++.+.|++++|...|+++++..+.. .........++..|+.+|.+.|++++|+..++++++.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~--------~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEG--------EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh--------hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 55667789999999999999999999999876542 1111224678888999999999999999999999987
Q ss_pred CCCCChHhHHHH
Q 004814 203 GLLPDVKNCNRI 214 (729)
Q Consensus 203 ~~~~~~~~~~~l 214 (729)
.|. +..+++.+
T Consensus 76 ~P~-~~~a~~Nl 86 (95)
T d1tjca_ 76 DPE-HQRANGNL 86 (95)
T ss_dssp CTT-CHHHHHHH
T ss_pred CcC-CHHHHHHH
Confidence 655 45555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.00 E-value=0.0048 Score=51.83 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=64.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CC----------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-
Q 004814 565 IHASLEMGDLRRGRDLFNNMLRKGL-SP----------TLVTYTVLIHAHAARGRLELAFMYFSEMQVK-----GIRPN- 627 (729)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~- 627 (729)
...+.+.|++++|++.|++.++... .| ....|+.+..+|.+.|++++|...+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3445566777777777777765310 11 1356778888888888888888888887652 11222
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 628 ----VITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 628 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
...++.++.+|...|++++|+..|+++.+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22467788999999999999999998876
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.0025 Score=48.28 Aligned_cols=66 Identities=15% Similarity=0.036 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 631 YNALINGLCRLRRIDQAYGLFIDMEEEG-----ILPN-KYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 631 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g-----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
+-.++..+.+.|++++|+..|++.++.. ..++ ..++..++.++.+.|++++|+..+++++ .+.|+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL--~l~P~~ 79 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL--ELDPEH 79 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH--HhCcCC
Confidence 3455566666666666666666665420 1111 3356666666777777777777777766 455654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.82 E-value=0.018 Score=46.44 Aligned_cols=81 Identities=11% Similarity=0.005 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCC
Q 004814 607 GRLELAFMYFSEMQVKGIRPNVITYNALINGLCR----LRRIDQAYGLFIDMEEEGILPNKYTYTILINENCN----AGN 678 (729)
Q Consensus 607 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~ 678 (729)
.+.++|.+++++..+.| ++.....|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45556666666665553 34444444444443 234566666666666654 33444445554444 345
Q ss_pred HHHHHHHHHHHHHCC
Q 004814 679 WQEALRLYKEMLDRE 693 (729)
Q Consensus 679 ~~~A~~~~~~m~~~~ 693 (729)
.++|.++|+++.+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666665444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.40 E-value=0.041 Score=44.24 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 004814 188 MVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK----EGEMQEAL 263 (729)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 263 (729)
++++|++.|++..+.| +...+..+.. ....+.++|.++|++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4577888888877766 3344443432 22345666777777666654 44445555555543 34556666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCC
Q 004814 264 ELLWEMQGRGCSPNGVTYNVLITGFSR----NGELEQARGLIRDMLKLG 308 (729)
Q Consensus 264 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 308 (729)
++|++..+.| +......|...|.. ..+.++|.+.|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 6666666554 33334444444443 235555555555555554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.78 E-value=0.27 Score=37.53 Aligned_cols=140 Identities=13% Similarity=0.026 Sum_probs=85.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 004814 534 CKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAF 613 (729)
Q Consensus 534 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 613 (729)
.-.|..++..+++.+.... .+..-||-++--....-+-+...+.++.+-+. -|. ..+++.....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHH
Confidence 3456666666666665553 13334444444344444444444444444322 010 1223333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 614 MYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDRE 693 (729)
Q Consensus 614 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 693 (729)
..+-.+- -+....+..++.+.++|+-++-.++++++.+.+ .|++.....+..+|.+-|...+|-+++.++-++|
T Consensus 77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3332221 244456677788888999888888888877765 7888888899999999999999999999988877
Q ss_pred CC
Q 004814 694 IE 695 (729)
Q Consensus 694 ~~ 695 (729)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 65
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.12 E-value=0.48 Score=36.18 Aligned_cols=135 Identities=12% Similarity=0.073 Sum_probs=67.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHHH
Q 004814 430 RYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR---FAYTTQIAGELKLGDTSE 506 (729)
Q Consensus 430 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~ 506 (729)
-.|..++..+++.+..+. .+..-||.++--....-+-+...++++.+-+. .|. .....++.++...+.
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls~C~Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNT--- 84 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTC---
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCchhhhcHHHHHHHHHHhcc---
Confidence 345666666666666553 24445555554444444444444444433221 111 112223333332222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 507 AYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLR 586 (729)
Q Consensus 507 A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (729)
+.......++.+.+.|+-+.-.++++.+.+.+ ++++...-.+..+|.+.|+..++-+++.++-+
T Consensus 85 ---------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 85 ---------------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp ---------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 22333444555566666666666666655533 45666666666666666666666666666666
Q ss_pred CCC
Q 004814 587 KGL 589 (729)
Q Consensus 587 ~~~ 589 (729)
.|+
T Consensus 149 ~G~ 151 (161)
T d1wy6a1 149 KGE 151 (161)
T ss_dssp TTC
T ss_pred HhH
Confidence 653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.74 E-value=0.12 Score=40.10 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 625 RPNVITYNALINGLCRLRR---IDQAYGLFIDMEEEGILPNK-YTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 625 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~ 700 (729)
.|...+--..++++.+... .++|+.+++++.+.+ +.+. ..+..|.-+|.+.|++++|.+.+++++ .+.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L--~ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--EHERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--ccCCCcHH
Confidence 4566666677777776644 567888888888653 3343 466677788889999999999999998 67787654
Q ss_pred HHHH
Q 004814 701 HSAL 704 (729)
Q Consensus 701 ~~~l 704 (729)
...+
T Consensus 109 A~~L 112 (124)
T d2pqrb1 109 VGAL 112 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.88 E-value=4.6 Score=39.31 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=35.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 635 INGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 635 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
+..+...|+..+|...|..+... .+......+.....+.|.++.|+....+.
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 44566778888888877777653 24555566667777788888888776665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.70 E-value=0.68 Score=35.64 Aligned_cols=71 Identities=10% Similarity=-0.105 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLL---RSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFN 197 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~---~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 197 (729)
.+++.+--..+.+|+++... ++|+.+|+++++.+|.. ....+..|+-+|.+.|++++|...++
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~--------------~rd~lY~Lav~yyklgdy~~A~~~~~ 97 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVD 97 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------HHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh--------------HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 46788888888999987654 57888898888766541 24566778888999999999999999
Q ss_pred HHHHCCCC
Q 004814 198 KMLRNGLL 205 (729)
Q Consensus 198 ~~~~~~~~ 205 (729)
++++..+.
T Consensus 98 ~~L~ieP~ 105 (124)
T d2pqrb1 98 TLFEHERN 105 (124)
T ss_dssp HHHHHCTT
T ss_pred HHHccCCC
Confidence 99997644
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.10 E-value=5.8 Score=38.57 Aligned_cols=169 Identities=9% Similarity=-0.043 Sum_probs=95.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 004814 535 KLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFM 614 (729)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 614 (729)
..+..+.+...+......+. +.....-.+......+++..+...++.+.... .....-.--+..++...|+.++|..
T Consensus 264 ~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~ 340 (450)
T d1qsaa1 264 GNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKE 340 (450)
T ss_dssp STTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHH
Confidence 34556667666666665532 33333444445566778888877777664321 1223334556777888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 615 YFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGI--LPNKY----TYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 615 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
.|..+... ++ -|..|.. .+.|..-. +..... .+... .-...+..+...|+..+|...+..
T Consensus 341 ~~~~~a~~---~~--fYG~LAa--~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~ 406 (450)
T d1qsaa1 341 ILHQLMQQ---RG--FYPMVAA--QRIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWAN 406 (450)
T ss_dssp HHHHHHTS---CS--HHHHHHH--HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcC---CC--hHHHHHH--HHcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHH
Confidence 88887642 33 2333321 22222100 000000 00000 112345677889999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHhhhccchhhc-HHHHHHHh
Q 004814 689 MLDREIEPDYCTHSALLLKQLDKDYKVH-AVEYLESL 724 (729)
Q Consensus 689 m~~~~~~pd~~~~~~ll~~~l~~~g~~~-a~~~l~~l 724 (729)
+... . +......+ +....+.|..+ |+.-..+-
T Consensus 407 l~~~-~--~~~~~~~l-a~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 407 LVKS-K--SKTEQAQL-ARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHTT-C--CHHHHHHH-HHHHHHTTCHHHHHHHHHHT
T ss_pred HHhC-C--CHHHHHHH-HHHHHHCCChhHHHHHHHHH
Confidence 8742 3 33344444 77778888888 77665543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.93 E-value=6.5 Score=28.23 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004814 609 LELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILI 670 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 670 (729)
.-++.+-++.+......|++....+.+.+|.+.+++.-|+++++-...+ ..++...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 3344444555555555566666666666666666666666666655543 222334444443
|