Citrus Sinensis ID: 004824
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 728 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.947 | 0.911 | 0.420 | 1e-148 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.951 | 0.894 | 0.391 | 1e-137 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.887 | 0.883 | 0.369 | 1e-111 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.887 | 0.862 | 0.356 | 1e-101 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.548 | 0.495 | 0.274 | 3e-28 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.664 | 0.254 | 0.248 | 2e-15 | |
| P16271 | 1902 | PI-type proteinase OS=Lac | N/A | no | 0.648 | 0.248 | 0.248 | 8e-15 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.486 | 0.302 | 0.273 | 1e-14 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.486 | 0.302 | 0.273 | 1e-14 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.483 | 0.297 | 0.269 | 2e-14 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 526 bits (1354), Expect = e-148, Method: Compositional matrix adjust.
Identities = 313/745 (42%), Positives = 440/745 (59%), Gaps = 55/745 (7%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCSVSESSKATATSSTISSKLVYTYANSIHGFSATLTVSE 60
M S MP ++ WY L S+S+S++ L+YTY N+IHGFS LT E
Sbjct: 36 MAKSQMPSSFDLHSNWYDSSLRSISDSAE-----------LLYTYENAIHGFSTRLTQEE 84
Query: 61 LETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSG-AWPASNYGKGVIIGLVDTGIWP 119
++L PG IS P+ +HTT T FLGL + +P + V++G++DTG+WP
Sbjct: 85 ADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGSYSDVVVGVLDTGVWP 144
Query: 120 ESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKL--KVRMN 177
ES+S+SDEG +P WKG C +G F +SLCN+KLIGARFF +G + +
Sbjct: 145 ESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKESR 204
Query: 178 SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVV 237
SPRD GHGTHTSS AAG+ V+G+S GYA+G ARG+APRA VA+YK W G +SSD++
Sbjct: 205 SPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGGCFSSDIL 264
Query: 238 AAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTL 297
AAID+A+ D V+VLS+SLG ++ + D +A+ FAAME+G+LV SAGN GPS +L
Sbjct: 265 AAIDKAIADNVNVLSMSLGGGMSDYY--RDGVAIGAFAAMERGILVSCSAGNAGPSSSSL 322
Query: 298 INGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDA------- 350
N APW+ TVGAGT+DR+F LGNG SL+ G + P ++ L F+ A
Sbjct: 323 SNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKL-LPFIYAGNASNAT 381
Query: 351 ----CDSVTEL-KKVINSIVVCREDSSISSQI---DNAVAAGVLGAVFISNSALLEVYIR 402
C + T + +KV IV+C D I++++ D AAG +G + + +A E +
Sbjct: 382 NGNLCMTGTLIPEKVKGKIVMC--DRGINARVQKGDVVKAAGGVGMILANTAANGEELVA 439
Query: 403 SS--FPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCP 460
+ PA + G I Y+ NPT S+ TV+G KP+P+V ++SSRGP P
Sbjct: 440 DAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITP 499
Query: 461 NIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAH 520
NI KPD++APG +LA+W+ + + S FN++SGTSM+ PHV+G+A LLK+ H
Sbjct: 500 NILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVH 559
Query: 521 PDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDA 580
P+WSPAAIRSAL+TTA + D + P++P D GAGH++P A +PGL+YD
Sbjct: 560 PEWSPAAIRSALMTTAYKTYKDGKPLLDIATGK-PSTPFDHGAGHVSPTTATNPGLIYDL 618
Query: 581 TAEDYIKLLCAMNYKPEQIRIFTKSSQKCNNRS----LDLNYPSFITFFNDYDSSSDEKV 636
T EDY+ LCA+NY QIR ++ + C+ DLNYPSF + D
Sbjct: 619 TTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAV-------NVDGVG 671
Query: 637 VKEFWRTVTNAEEVGTAYTAKLTG-IDGLKVYVEPRRLVFKQKYEKQSYKL--TLEGPKL 693
++ RTVT+ GT Y+ K+T G+K+ VEP L FK+ EK+SY + T++ K
Sbjct: 672 AYKYTRTVTSVGGAGT-YSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKP 730
Query: 694 LEKDVVYGSISWVDDDGRYEVRSPI 718
+ +GSI W DG++ V SP+
Sbjct: 731 SGSN-SFGSIEW--SDGKHVVGSPV 752
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 488 bits (1257), Expect = e-137, Method: Compositional matrix adjust.
Identities = 298/761 (39%), Positives = 426/761 (55%), Gaps = 68/761 (8%)
Query: 4 SAMPKAYSSLYTWYLFMLCSVSESSKATATSSTI-SSKLVYTYANSIHGFSATLTVSELE 62
S K ++S + W+L L E+ SS+L+Y+Y ++I GF+A LT SE E
Sbjct: 36 SETAKTFASKFDWHLSFL---QEAVLGVEEEEEEPSSRLLYSYGSAIEGFAAQLTESEAE 92
Query: 63 TLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSL--SGAWPASNYGKGVIIGLVDTGIWPE 120
L+ P ++ PD L V TT++ +FLGL SG W S +G+G IIG++DTG+WPE
Sbjct: 93 ILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGVWSKSRFGQGTIIGVLDTGVWPE 152
Query: 121 SQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKG-LIANNPKLKVRMN-- 177
S SF D GM +P +WKG C G F+SS CN+KLIGARFF +G +AN+P+ M
Sbjct: 153 SPSFDDTGMPSIPRKWKGICQEGESFSSSSCNRKLIGARFFIRGHRVANSPEESPNMPRE 212
Query: 178 --SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSD 235
S RD +GHGTHT+S G+ V ++ G G+ARG+AP A +A+YK W +G YSSD
Sbjct: 213 YISARDSTGHGTHTASTVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKVCWFNGCYSSD 272
Query: 236 VVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW 295
++AAID A+QD VDVLSLSLG I L DD IA+ TF AME+G+ V+ +AGN+GP
Sbjct: 273 ILAAIDVAIQDKVDVLSLSLGGF--PIPLYDDTIAIGTFRAMERGISVICAAGNNGPIES 330
Query: 296 TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPG---NSSPSQVSLAFMDACD 352
++ N APW+ T+GAGT+DR F + L NG + +SLYPG ++ +V + ++ D
Sbjct: 331 SVANTAPWVSTIGAGTLDRRFPAVVRLANGKLLYGESLYPGKGIKNAGREVEVIYVTGGD 390
Query: 353 SVTEL--------KKVINSIVVCREDSSISSQIDNAV--AAGVLGAVFISNSAL------ 396
+E +++ +V+C + S+ AV A GV A+ ++N+ +
Sbjct: 391 KGSEFCLRGSLPREEIRGKMVICDRGVNGRSEKGEAVKEAGGV--AMILANTEINQEEDS 448
Query: 397 LEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPF 456
++V++ PA I + + Y+ P + F TVIG AP V +S+RGP
Sbjct: 449 IDVHL---LPATLIGYTESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPS 505
Query: 457 LSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYS----NFNLMSGTSMATPHVAGV 512
L+ P+I KPD++APG ++A+W +GL Y NF +MSGTSM+ PHV+G+
Sbjct: 506 LANPSILKPDMIAPGVNIIAAWPQNLG----PTGLPYDSRRVNFTVMSGTSMSCPHVSGI 561
Query: 513 AGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKAL 572
L+++A+P+WSPAAI+SAL+TTA D IKD N PA +GAGH+NP KA+
Sbjct: 562 TALIRSAYPNWSPAAIKSALMTTADLYDRQGKAIKDG---NKPAGVFAIGAGHVNPQKAI 618
Query: 573 DPGLVYDATAEDYIKLLCAMNYKPEQIRIFTKSSQKCN-----NRSLDLNYPSFITFFND 627
+PGLVY+ DYI LC + + I T + CN N LNYPS F
Sbjct: 619 NPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFK- 677
Query: 628 YDSSSDEKVVKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLT 687
K + R VTN + Y+ + +G+KV V P+RLVFK + SY++
Sbjct: 678 -----RGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNPKRLVFKHVDQTLSYRVW 732
Query: 688 L------EGPKLLEKDVVYGSISWVDDDGRYE-VRSPIVAT 721
G K+ G ++WV+ + VRSPI T
Sbjct: 733 FVLKKKNRGGKV--ASFAQGQLTWVNSHNLMQRVRSPISVT 771
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust.
Identities = 259/701 (36%), Positives = 376/701 (53%), Gaps = 55/701 (7%)
Query: 41 LVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWP 100
+++TY S +GF+ LT E E + + G +S + +HTT + +FLG
Sbjct: 69 VLHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVPR-- 126
Query: 101 ASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARF 160
S +++G++DTGIWPES SF DEG + PP+WKG C + F CN+K+IGAR
Sbjct: 127 RSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARS 183
Query: 161 FNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACV 220
++ G P +N PRD +GHGTHT+S AAG V ++ +G G ARG P A +
Sbjct: 184 YHIG----RPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARI 239
Query: 221 AMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKG 280
A YK W G +D++AA D A+ DGVD++SLS+G N DAIA+ +F A+E+G
Sbjct: 240 AAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVG-GANPRHYFVDAIAIGSFHAVERG 298
Query: 281 VLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGN-----GVQIN-FKSLY 334
+L SAGN GP+++T + +PWLL+V A T+DR+F + +GN GV IN F + Y
Sbjct: 299 ILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFDNQY 358
Query: 335 PGNSSPSQVSLAFMDACDSVTELKKVIN------SIVVCREDSSISSQIDNAVAAGVLGA 388
S + D S K +N IVVC ++S G G
Sbjct: 359 YPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVC--EASFGPHEFFKSLDGAAGV 416
Query: 389 VFISNSALLEVYIRS-SFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMV 447
+ SN+ Y S P++ ++ ND + YI +P G+ F+ T I AP+V
Sbjct: 417 LMTSNT---RDYADSYPLPSSVLDPNDLLATLRYIYSIRSP-GATIFKSTTILNASAPVV 472
Query: 448 DSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATP 507
S+SSRGP + ++ KPDI PG +LA+W ++ V ++ L FN++SGTSM+ P
Sbjct: 473 VSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTL---FNIISGTSMSCP 529
Query: 508 HVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHIN 567
H+ G+A +K +P WSPAAI+SAL+TTASP++ + P + G+GH+N
Sbjct: 530 HITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFN----------PQAEFAYGSGHVN 579
Query: 568 PNKALDPGLVYDATAEDYIKLLCAMNYKPEQIRIFTKSSQKCNN----RSLDLNYPSFIT 623
P KA+ PGLVYDA DY+K LC Y + +R T C + R DLNYPSF
Sbjct: 580 PLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSF-- 637
Query: 624 FFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQS 683
S + + F RT+T+ + Y A ++ GL + V P L F +++S
Sbjct: 638 ---GLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKS 694
Query: 684 YKLTLEGPKLLEKDVVYGSISWVDDDGRYEVRSPIVATNLV 724
+ LT+ G ++ VV S+ W DG + VRSPI T+LV
Sbjct: 695 FTLTVRGS--IKGFVVSASLVW--SDGVHYVRSPITITSLV 731
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust.
Identities = 251/704 (35%), Positives = 373/704 (52%), Gaps = 58/704 (8%)
Query: 40 KLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAW 99
+ VY+Y + + F+A L+ E + + ++ +S + ++ +HTT + +F+GL +
Sbjct: 73 RKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAKRH 132
Query: 100 PASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGAR 159
+ + VIIG++DTGI P+S+SF D G+ P +WKG C G N + CN K+IGA+
Sbjct: 133 LKAE--RDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSC--GPYKNFTGCNNKIIGAK 188
Query: 160 FFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRAC 219
+F N P +VR SP D GHGTHTSS AG V +S +G A G ARG P A
Sbjct: 189 YFKHD--GNVPAGEVR--SPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSAR 244
Query: 220 VAMYKAIW-RHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAME 278
+AMYK W R G D++A + A+ DGV+++S+S+G + D+I+V +F AM
Sbjct: 245 LAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISIGGPIAD--YSSDSISVGSFHAMR 302
Query: 279 KGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNS 338
KG+L VASAGNDGPS T+ N PW+LTV A IDR F+ + LGNG +F +
Sbjct: 303 KGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGK--SFSGMGISMF 360
Query: 339 SPSQVSLAFMDACDSVT----------------ELKKVINSIVVCREDSS-ISSQIDNAV 381
SP S + D+ + KKV ++VCR + S I
Sbjct: 361 SPKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGGGGVESTIK--- 417
Query: 382 AAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGT 441
+ G GA+ +S+ L I + PA +N + G I YI + + +Q + V T
Sbjct: 418 SYGGAGAIIVSDQYLDNAQIFMA-PATSVNSSVGDIIYRYINSTRSASAVIQKTRQV--T 474
Query: 442 KPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSG 501
PAP V S+SSRGP + KPDI APG +LA+++ S+ + +S F ++SG
Sbjct: 475 IPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSG 534
Query: 502 TSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDM 561
TSMA PHVAGVA +K+ HPDW+PAAI+SA++T+A P+ ++ KDA
Sbjct: 535 TSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRRVN--KDAE--------FAY 584
Query: 562 GAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIR-IFTKSSQKCNN-----RSLD 615
G G INP +A PGLVYD Y++ LC Y + + S C++
Sbjct: 585 GGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDS 644
Query: 616 LNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVF 675
LNYP+ +S+ + F R VTN + YTA + G+++ VEP+ L F
Sbjct: 645 LNYPTIQLTLRSAKTST----LAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSF 700
Query: 676 KQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVRSPIV 719
+ +K+S+K+ ++ ++ +V G + W R+ VRSPIV
Sbjct: 701 SKASQKRSFKVVVKAKQMTPGKIVSGLLVW--KSPRHSVRSPIV 742
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 134/488 (27%), Positives = 217/488 (44%), Gaps = 89/488 (18%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
AW GKG+ + ++DTG V++N K
Sbjct: 173 AWDLGYTGKGIKVAIIDTG---------------------------VEYNHPDLKKNF-- 203
Query: 158 ARFFNKGLIANN--PKLKVRMNSPR-DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGI 214
++ + N+ PK + PR + + HGTH + A N G +G+
Sbjct: 204 GQYKGYDFVDNDYDPK-ETPTGDPRGEATDHGTHVAGTVAAN------------GTIKGV 250
Query: 215 APRACVAMYKAIWRHGVYSSD-VVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVAT 273
AP A + Y+ + G +++ V+A +++A+QDG DV++LSLG SLN D A + A
Sbjct: 251 APDATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGNSLNN---PDWATSTAL 307
Query: 274 FAAMEKGVLVVASAGNDGPSYWTLINGAPWL----LTVGAGTIDRE--------FEGSLT 321
AM +GV+ V S GN GP+ WT+ G+P ++VGA + + +
Sbjct: 308 DWAMSEGVVAVTSNGNSGPNGWTV--GSPGTSREAISVGATQLPLNEYAVTFGSYSSAKV 365
Query: 322 LGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDS-SISSQIDNA 380
+G + + K+L N V +A D E K + + V + S + + DNA
Sbjct: 366 MGYNKEDDVKAL--NNKEVELVEAGIGEAKD--FEGKDLTGKVAVVKRGSIAFVDKADNA 421
Query: 381 VAAGVLGAVFISN-SALLEVYIRS-SFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTV 438
AG +G V +N S +E + S P +++ DG+ ++ +K + T F+ TV
Sbjct: 422 KKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDGEKLVSALKAGETKT---TFKLTV 478
Query: 439 IGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNL 498
+ D +SSRGP + I KPDI APG + +S++ Y +
Sbjct: 479 SKALGEQVAD-FSSRGPVMDTWMI-KPDISAPGVNI------VSTIPTHDPDHPYG-YGS 529
Query: 499 MSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASP 558
GTSMA+PH+AG ++K A P WS I++A++ TA L KD+ +P +
Sbjct: 530 KQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTL-------KDSDGEVYPHNA 582
Query: 559 LDMGAGHI 566
G+ I
Sbjct: 583 QGAGSARI 590
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 148/596 (24%), Positives = 242/596 (40%), Gaps = 112/596 (18%)
Query: 44 TYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASN 103
+Y ++GFS + V ++ LK++ G + T + V+ ++ ++++ W SN
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAK---VYYPTDAKANSMANVQAVW--SN 203
Query: 104 Y---GKGVIIGLVDTGIWP--ESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGA 158
Y G+G ++ ++DTGI P + SD+ K+ + + +K G
Sbjct: 204 YKYKGEGTVVSVIDTGIDPTHKDMRLSDDKDVKLTKYDVEKFTDTAKHGRYFTSKVPYGF 263
Query: 159 RFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRA 218
+ + NN + + HG H + I N T G+AP A
Sbjct: 264 NYAD-----NNDTITDDTVDEQ----HGMHVAGIIGANGTGDD-----PTKSVVGVAPEA 309
Query: 219 CVAMYKAIWRHGVY----SSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATF 274
+ K S+ +V+AI+ + + G DVL++SLG LED IA A
Sbjct: 310 QLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPEIA-AVQ 368
Query: 275 AAMEKGVLVVASAGNDGPS----------YWTLIN----GAPWLLTVGAGTIDREFEGSL 320
A E G V SAGN G S Y+ L + G P + GA T+ E +
Sbjct: 369 NANESGTAAVISAGNSGTSGSATQGVNKDYYGLQDNEMVGTPGT-SRGATTV-ASAENTD 426
Query: 321 TLGNGVQI-NFKSLYPGNSSPSQVSLAFMD------------------------ACDSVT 355
+ V I + K L G P + L+ D A D
Sbjct: 427 VISQAVTITDGKDLQLG---PETIQLSSNDFTGSFDQKKFYVVKDASGDLSKGAAADYTA 483
Query: 356 ELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSA----LLEVYIRSSFPAAFIN 411
+ K I +V R + + + + A AAG G + ++N L + + ++FP ++
Sbjct: 484 DAKGKI--AIVKRGELNFADKQKYAQAAGAAGLIIVNNDGTATPLTSIRLTTTFPTFGLS 541
Query: 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKP--APMVDSYSSRGPFLSCPNIP-KPDIL 468
GQ ++D++ + + ++ T++ + + ++S GP N+ KPDI
Sbjct: 542 SKTGQKLVDWVTAHPDDSLGVKIALTLLPNQKYTEDKMSDFTSYGP---VSNLSFKPDIT 598
Query: 469 APGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAA--------H 520
APG + WS Q+ Y+N MSGTSMA+P +AG LLK A +
Sbjct: 599 APGGNI---WS-------TQNNNGYTN---MSGTSMASPFIAGSQALLKQALNNKNNPFY 645
Query: 521 PDWSP---AAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573
D+ A+ L T NT I D + NN SP GAG ++ A+D
Sbjct: 646 ADYKQLKGTALTDFLKTVEM---NTAQPINDINYNNVIVSPRRQGAGLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 151/608 (24%), Positives = 243/608 (39%), Gaps = 136/608 (22%)
Query: 44 TYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASN 103
+Y ++GFS + V ++ LK++ G + T + V+ ++ ++++ W SN
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAK---VYYPTDAKANSMANVQAVW--SN 203
Query: 104 Y---GKGVIIGLVDTGIWP--ESQSFSDEGMAKVP----PRWKGECMSGVQFNSSLCNKK 154
Y G+G ++ ++D+GI P + SD+ K+ ++ G FNS +
Sbjct: 204 YKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYFNSKVP--- 260
Query: 155 LIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIAR-- 212
FN NN + + HG H + I N G A+
Sbjct: 261 ----YGFN--YADNNDTITDDTVDEQ----HGMHVAGIIGAN--------GTGDDPAKSV 302
Query: 213 -GIAPRACVAMYKAIWRHGVY----SSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDD 267
G+AP A + K SS +V+AI+ + + G DVL++SLG LED
Sbjct: 303 VGVAPEAQLLAMKVFTNSDTSATTGSSTLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDP 362
Query: 268 AIAVATFAAMEKGVLVVASAGNDGPS----------YWTLIN----GAPWL--------- 304
+A A A E G V SAGN G S Y+ L + G P
Sbjct: 363 ELA-AVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTSRGATTVAS 421
Query: 305 ------------------LTVGAGTID---REFEGSLTLGNGVQINFKSLYPGNSSPSQV 343
L +G GTI +F GS Q F + + + S+
Sbjct: 422 AENTDVITQAVTITDGTGLQLGPGTIQLSSNDFTGSFD-----QKKFYVVKDASGNLSKG 476
Query: 344 SLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSA----LLEV 399
+LA D + K I +V R + S + A AAG G + ++N + +
Sbjct: 477 ALA-----DYTADAKGKI--AIVKRGELSFDDKQKYAQAAGAAGLIIVNNDGTATPVTSM 529
Query: 400 YIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKP--APMVDSYSSRGPFL 457
+ ++FP ++ GQ ++D++ + + ++ T++ + + ++S GP
Sbjct: 530 ALTTTFPTFGLSSVTGQKLVDWVTAHPDDSLGVKIALTLVPNQKYTEDKMSDFTSYGP-- 587
Query: 458 SCPNIP-KPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLL 516
N+ KPDI APG + WS Q+ Y+N MSGTSMA+P +AG LL
Sbjct: 588 -VSNLSFKPDITAPGGNI---WS-------TQNNNGYTN---MSGTSMASPFIAGSQALL 633
Query: 517 KAA-----------HPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGH 565
K A + A+ L T NT I D + NN SP GAG
Sbjct: 634 KQALNNKNNPFYAYYKQLKGTALTDFLKTVEM---NTAQPINDINYNNVIVSPRRQGAGL 690
Query: 566 INPNKALD 573
++ A+D
Sbjct: 691 VDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 176/421 (41%), Gaps = 67/421 (15%)
Query: 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV--YSSDVVAAIDQ 242
HGTH S I +GN + Y G P A + + + +G+ Y+ + AI
Sbjct: 195 HGTHVSGILSGN-APSETKEPYRL---EGAMPEAQLLLMRVEIVNGLADYARNYAQAIRD 250
Query: 243 ALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDG----------- 291
A+ G V+++S G + D A A KGV +V SAGND
Sbjct: 251 AVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLA 310
Query: 292 --PSYWTLINGAPW----LLTVGAGTIDREFEGSLTLGNGVQINFKS--LYPGNSSPSQV 343
P Y + G P LTV + + D++ + T+ Q + + L P++
Sbjct: 311 DHPDYGVV--GTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKA 368
Query: 344 -SLAFMDACDSVTELKKVINSI-VVCREDSSISSQIDNAVAAGVLGAVFISNSAL---LE 398
A+ + + K V I ++ R D +I NA AG +G + N +E
Sbjct: 369 YDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIE 428
Query: 399 VYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLS 458
+ PAAFI+ DG + D KK + + T GTK + +SS G L+
Sbjct: 429 LPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLPTASGTK----LSRFSSWG--LT 482
Query: 459 CPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLK- 517
KPDI APG +L SSVA + + +SGTSM+ P VAG+ GLL+
Sbjct: 483 ADGNIKPDIAAPGQDIL------SSVAN-------NKYAKLSGTSMSAPLVAGIMGLLQK 529
Query: 518 ---AAHPDWSPAA----IRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNK 570
+PD +P+ + L+++A+ L D + SP GAG ++ K
Sbjct: 530 QYETQYPDMTPSERLDLAKKVLMSSATAL-------YDEDEKAY-FSPRQQGAGAVDAKK 581
Query: 571 A 571
A
Sbjct: 582 A 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 176/421 (41%), Gaps = 67/421 (15%)
Query: 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV--YSSDVVAAIDQ 242
HGTH S I +GN + Y G P A + + + +G+ Y+ + AI
Sbjct: 195 HGTHVSGILSGN-APSETKEPYRL---EGAMPEAQLLLMRVEIVNGLADYARNYAQAIRD 250
Query: 243 ALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDG----------- 291
A+ G V+++S G + D A A KGV +V SAGND
Sbjct: 251 AVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLA 310
Query: 292 --PSYWTLINGAPW----LLTVGAGTIDREFEGSLTLGNGVQINFKS--LYPGNSSPSQV 343
P Y + G P LTV + + D++ + T+ Q + + L P++
Sbjct: 311 DHPDYGVV--GTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKA 368
Query: 344 -SLAFMDACDSVTELKKVINSI-VVCREDSSISSQIDNAVAAGVLGAVFISNSAL---LE 398
A+ + + K V I ++ R D +I NA AG +G + N +E
Sbjct: 369 YDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIE 428
Query: 399 VYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLS 458
+ PAAFI+ DG + D KK + + T GTK + +SS G L+
Sbjct: 429 LPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLPTASGTK----LSRFSSWG--LT 482
Query: 459 CPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLK- 517
KPDI APG +L SSVA + + +SGTSM+ P VAG+ GLL+
Sbjct: 483 ADGNIKPDIAAPGQDIL------SSVAN-------NKYAKLSGTSMSAPLVAGIMGLLQK 529
Query: 518 ---AAHPDWSPAA----IRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNK 570
+PD +P+ + L+++A+ L D + SP GAG ++ K
Sbjct: 530 QYETQYPDMTPSERLDLAKKVLMSSATAL-------YDEDEKAY-FSPRQQGAGAVDAKK 581
Query: 571 A 571
A
Sbjct: 582 A 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/423 (26%), Positives = 177/423 (41%), Gaps = 71/423 (16%)
Query: 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV--YSSDVVAAIDQ 242
HGTH S I +GN + Y G P A + + + +G+ Y+ + AI
Sbjct: 193 HGTHVSGILSGN-APSETKEPYRL---EGAMPEAQLLLMRVEIVNGLADYARNYAQAIRD 248
Query: 243 ALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDG----------- 291
A+ G V+++S G + D A A KGV +V SAGND
Sbjct: 249 AVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLA 308
Query: 292 --PSYWTLINGAPW----LLTVGAGTIDREFEGSLTLGNGVQINFKS--LYPGNSSPSQV 343
P Y + G P LTV + + D++ + T+ Q + + L P++
Sbjct: 309 DHPDYGVV--GTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKA 366
Query: 344 -SLAFMDACDSVTELKKVINSI-VVCREDSSISSQIDNAVAAGVLGAVFISNSAL---LE 398
A+ + + K V I ++ R D +I NA AG +G + N +E
Sbjct: 367 YDYAYANRGMKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIE 426
Query: 399 VYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKT--VIGTKPAPMVDSYSSRGPF 456
+ PAAFI+ DG + +NP ++ F T V+ T + +SS G
Sbjct: 427 LPNVDQMPAAFISRKDGLLL------KENPQKTITFNATPKVLPTASGTKLSRFSSWG-- 478
Query: 457 LSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLL 516
L+ KPDI APG +L SSVA + + +SGTSM+ P VAG+ GLL
Sbjct: 479 LTADGNIKPDIAAPGQDIL------SSVAN-------NKYAKLSGTSMSAPLVAGIMGLL 525
Query: 517 K----AAHPDWSPAA----IRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINP 568
+ +PD +P+ + L+++A+ L D + SP GAG ++
Sbjct: 526 QKQYETQYPDMTPSERLDLAKKVLMSSATAL-------YDEDEKAY-FSPRQQGAGAVDA 577
Query: 569 NKA 571
KA
Sbjct: 578 KKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 728 | ||||||
| 224094306 | 725 | predicted protein [Populus trichocarpa] | 0.991 | 0.995 | 0.692 | 0.0 | |
| 255565228 | 768 | Cucumisin precursor, putative [Ricinus c | 0.994 | 0.942 | 0.678 | 0.0 | |
| 255565220 | 665 | Cucumisin precursor, putative [Ricinus c | 0.901 | 0.986 | 0.651 | 0.0 | |
| 225443421 | 762 | PREDICTED: subtilisin-like protease [Vit | 0.993 | 0.948 | 0.616 | 0.0 | |
| 225458649 | 762 | PREDICTED: subtilisin-like protease [Vit | 0.990 | 0.946 | 0.609 | 0.0 | |
| 253740260 | 763 | subtilisin-like protease preproenzyme [N | 0.990 | 0.944 | 0.604 | 0.0 | |
| 224137566 | 775 | predicted protein [Populus trichocarpa] | 0.994 | 0.934 | 0.567 | 0.0 | |
| 224137570 | 743 | predicted protein [Populus trichocarpa] | 0.994 | 0.974 | 0.586 | 0.0 | |
| 225438740 | 769 | PREDICTED: subtilisin-like protease [Vit | 0.987 | 0.934 | 0.581 | 0.0 | |
| 118487593 | 778 | unknown [Populus trichocarpa] | 0.994 | 0.930 | 0.586 | 0.0 |
| >gi|224094306|ref|XP_002310134.1| predicted protein [Populus trichocarpa] gi|222853037|gb|EEE90584.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1051 bits (2718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/728 (69%), Positives = 607/728 (83%), Gaps = 6/728 (0%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCSVSESSKATATSSTISSKLVYTYANSIHGFSATLTVSE 60
MD SAMPKA++ + WYL + SVS+++K+T T + SK +YTY +S+ GFSA+LT SE
Sbjct: 1 MDRSAMPKAFTDHHNWYLATISSVSDTAKSTFTRT---SKHIYTYTSSVQGFSASLTKSE 57
Query: 61 LETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDTGIWPE 120
LE LKK PGYISST DR + VHTTHTSEFLGLSS SGAWP +NYG+ +IIGLVDTGIWPE
Sbjct: 58 LEALKKSPGYISSTRDRKIKVHTTHTSEFLGLSSSSGAWPTANYGEDMIIGLVDTGIWPE 117
Query: 121 SQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPR 180
S+SFSDEGM +VP RWKG+C G QFNSS+CNKKLIGAR++NKGL+AN+PK+K+ MNS R
Sbjct: 118 SESFSDEGMTEVPSRWKGKCEPGTQFNSSMCNKKLIGARYYNKGLLANDPKIKISMNSTR 177
Query: 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAI 240
D GHGTHTSS AAGNYVKG+SYFGYA G + G+APRA +AMYKAIWR+GVY SDV+AAI
Sbjct: 178 DTDGHGTHTSSTAAGNYVKGASYFGYANGTSSGMAPRARIAMYKAIWRYGVYESDVLAAI 237
Query: 241 DQALQDGVDVLSLSLGLSL-NGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLIN 299
DQA+QDGVD+LSLSL +++ + FLEDD IA+A+FAAMEKGV V ASAGN GP+Y+TL+N
Sbjct: 238 DQAIQDGVDILSLSLTVAIEDDFFLEDDTIAIASFAAMEKGVFVAASAGNAGPNYYTLVN 297
Query: 300 GAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKK 359
GAPW+LT+GAGTIDREFEG LTLGNG QI+F ++YPGN S S L FMD C+SV ELKK
Sbjct: 298 GAPWMLTIGAGTIDREFEGVLTLGNGNQISFPTVYPGNYSLSHKPLVFMDGCESVNELKK 357
Query: 360 VINSIVVCREDSSISSQIDNAVAAGVLGAVFISN-SALLEVYIRSSFPAAFINVNDGQTI 418
V N I+VC+++ + S QIDNA +A V GAVFISN ++ E Y RSSFPA +I + DGQ +
Sbjct: 358 VKNKIIVCKDNLTFSDQIDNAASARVSGAVFISNHTSPSEFYTRSSFPAVYIGLQDGQRV 417
Query: 419 IDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASW 478
IDYIK+ +P G++ FRKTV GTKPAP VD YS RGPF SC ++ KPD+LAPG+LVLASW
Sbjct: 418 IDYIKESKDPRGTVVFRKTVTGTKPAPRVDGYSGRGPFASCRSVLKPDLLAPGTLVLASW 477
Query: 479 SPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASP 538
SPISSVAEV+S L+S FNL+SGTSMATPHVAGVA L+K AHPDWSPAAIRSAL+TTA
Sbjct: 478 SPISSVAEVRSHSLFSKFNLLSGTSMATPHVAGVAALIKKAHPDWSPAAIRSALMTTADS 537
Query: 539 LDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQ 598
LDNTLS IKDASNNN PA+P+D+G+GHINPNK+LDPGL+YDATAEDYIKLLCAMNY +Q
Sbjct: 538 LDNTLSPIKDASNNNLPATPIDIGSGHINPNKSLDPGLIYDATAEDYIKLLCAMNYTNKQ 597
Query: 599 IRIFTKSSQK-CNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTAK 657
I+I T+SS C NRSLDLNYPSFI +F+ YDS S EKVV +F RT+TN E ++YTAK
Sbjct: 598 IQIITRSSHHDCKNRSLDLNYPSFIAYFDSYDSGSKEKVVHKFQRTLTNVGERMSSYTAK 657
Query: 658 LTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVRSP 717
L G+DG+KV VEP++LVFK+++EK SY LTLEGPK LE+DV++GS+SWV D G+Y VRSP
Sbjct: 658 LLGMDGIKVSVEPQKLVFKKEHEKLSYTLTLEGPKSLEEDVIHGSLSWVHDGGKYVVRSP 717
Query: 718 IVATNLVP 725
IVAT++ P
Sbjct: 718 IVATSVTP 725
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565228|ref|XP_002523606.1| Cucumisin precursor, putative [Ricinus communis] gi|223537168|gb|EEF38801.1| Cucumisin precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1050 bits (2715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/727 (67%), Positives = 615/727 (84%), Gaps = 3/727 (0%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCSVSESSKATATSSTISSKLVYTYANSIHGFSATLTVSE 60
MD SAMPKA+S + WYL + +VS++SKA T + SK +YTY +S+HGFSA+LT SE
Sbjct: 44 MDLSAMPKAFSDHHNWYLATISAVSDTSKAAVTPA---SKHIYTYTSSVHGFSASLTNSE 100
Query: 61 LETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDTGIWPE 120
LE+LKK PGYISST DRPL VHTTHTS+FLGLSS+SGAWPA++YG+ VIIGLVDTGIWPE
Sbjct: 101 LESLKKYPGYISSTRDRPLKVHTTHTSQFLGLSSVSGAWPATSYGEDVIIGLVDTGIWPE 160
Query: 121 SQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPR 180
SQSFSD GM+ +P RW+G+C SG FNSSLCNKKLIGA FFNKGL+ANNPKLK+ +NSPR
Sbjct: 161 SQSFSDVGMSSIPSRWRGKCSSGTHFNSSLCNKKLIGAHFFNKGLLANNPKLKISVNSPR 220
Query: 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAI 240
D +GHGTHT+SIAAGNYVKG+SYFGYA G ARG APRA +AMYKA+WR+GVY SDV+AAI
Sbjct: 221 DTNGHGTHTASIAAGNYVKGASYFGYANGDARGTAPRARIAMYKALWRYGVYESDVLAAI 280
Query: 241 DQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLING 300
DQA+QDGVDVLSLSL ++ + +F+EDD IA+ATFAAM+KG+ V ASAGNDGP+YWTL+NG
Sbjct: 281 DQAIQDGVDVLSLSLAIATDNVFMEDDPIAIATFAAMKKGIFVAASAGNDGPAYWTLVNG 340
Query: 301 APWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKV 360
APWLLTVGAGTIDREF+G LTLG+G +I+F +LYPG SS S++ L F++ C+++ E++K
Sbjct: 341 APWLLTVGAGTIDREFKGILTLGDGKRISFNTLYPGKSSLSEIPLVFLNGCENMQEMEKY 400
Query: 361 INSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIID 420
N IVVC+++ SIS Q+ NA A V GA+FI++ L E Y RSS+PAAFI + DGQ++++
Sbjct: 401 KNRIVVCKDNLSISDQVQNAAKARVSGAIFITDITLSEYYTRSSYPAAFIGLKDGQSVVE 460
Query: 421 YIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSP 480
YI+ +NP G+LQF+KTV+GTKPAP VDSYSSRGPF SC + KPDILAPGSLVLASWSP
Sbjct: 461 YIRSSNNPIGNLQFQKTVLGTKPAPKVDSYSSRGPFTSCQYVLKPDILAPGSLVLASWSP 520
Query: 481 ISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLD 540
+SSV EV+S ++S FNL+SGTSMATPHVAG+A L+K AHPDWSPAAIRSAL+TT++ LD
Sbjct: 521 MSSVTEVRSHPIFSKFNLLSGTSMATPHVAGIAALIKKAHPDWSPAAIRSALMTTSNSLD 580
Query: 541 NTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIR 600
NT + IKDASN++ PA+PLD+GAGH++PNK+LDPGL+YDATA+DY+KLLCAMNY +QI+
Sbjct: 581 NTRTPIKDASNHDLPANPLDIGAGHVDPNKSLDPGLIYDATADDYMKLLCAMNYTKKQIQ 640
Query: 601 IFTKSSQKCNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTAKLTG 660
I T+S+ C N+SLDLNYPSFI +FN+ DS +EKVV+EF RT+TN ++Y+AK+T
Sbjct: 641 IITRSNPNCVNKSLDLNYPSFIAYFNNDDSDLNEKVVREFRRTLTNVGMGMSSYSAKVTP 700
Query: 661 IDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVRSPIVA 720
+ G++ VEP+ LVF+ KYEK SYKLTLEGPK+LE+ VV+GS+SWV D+G+Y V SPIVA
Sbjct: 701 MYGVRATVEPKELVFRNKYEKLSYKLTLEGPKILEEMVVHGSLSWVHDEGKYVVTSPIVA 760
Query: 721 TNLVPQS 727
T+LVP S
Sbjct: 761 TSLVPDS 767
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565220|ref|XP_002523602.1| Cucumisin precursor, putative [Ricinus communis] gi|223537164|gb|EEF38797.1| Cucumisin precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/680 (65%), Positives = 543/680 (79%), Gaps = 24/680 (3%)
Query: 47 NSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASNYGK 106
NS+HGFSA LT SELE+LKK PGYISST DRPL +HTTHTS+FLGLSS SGAWPA+NYG+
Sbjct: 2 NSVHGFSARLTDSELESLKKYPGYISSTRDRPLKLHTTHTSQFLGLSSSSGAWPATNYGE 61
Query: 107 GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLI 166
VIIG SQ RWKG+C+S QFNSSLCNKKLIGARF+NKGL
Sbjct: 62 DVIIG---------SQ------------RWKGKCVSDTQFNSSLCNKKLIGARFYNKGLY 100
Query: 167 ANNPKL-KVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKA 225
A +P++ + +NS RD GHGTHT+S AAGN+V+G+SYFGYA G A G+APRA +A+YKA
Sbjct: 101 AKHPEISNLTINSTRDTDGHGTHTASTAAGNFVEGASYFGYANGTASGMAPRARIAIYKA 160
Query: 226 IWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVA 285
WR+G SDV+AAIDQA+QDGVD+LSLSL ++ IFLEDD IA+ATFAAM KG+ V A
Sbjct: 161 SWRYGTTESDVLAAIDQAIQDGVDILSLSLAFHMDDIFLEDDTIAIATFAAMRKGIFVAA 220
Query: 286 SAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSL 345
SAGNDGP YWTL+NGAPWL+TVGAGT+DREF LTLGNG QI +LYPGN S SQ L
Sbjct: 221 SAGNDGPLYWTLVNGAPWLVTVGAGTVDREFGALLTLGNGNQIKHSTLYPGNYSLSQRRL 280
Query: 346 AFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSF 405
F+D C+S+ E++K+ I+VC+++ S+S Q++NA +AGV GA+FI++ + + Y RSSF
Sbjct: 281 VFLDGCESIKEMEKIKEQIIVCKDNLSLSDQVENAASAGVSGAIFITDFPVSDYYTRSSF 340
Query: 406 PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKP 465
PAAF+++ DGQ I+DYI+ ++P L+F KT+IGTKPAPMVDSYSSRGP+ C + KP
Sbjct: 341 PAAFVDLKDGQKIVDYIQSSNDPKAKLEFHKTIIGTKPAPMVDSYSSRGPYARCQYVLKP 400
Query: 466 DILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSP 525
D+LAPG++VLASWSPISSVAEV S L+S FNL SGTSMATPHVAGVA L+K AHPDWSP
Sbjct: 401 DLLAPGTIVLASWSPISSVAEVGSVELFSKFNLDSGTSMATPHVAGVAALVKKAHPDWSP 460
Query: 526 AAIRSALVTTASPLDNTLSHIKDASNNNF-PASPLDMGAGHINPNKALDPGLVYDATAED 584
AAIRSAL+TTA+PLDNT S IKD SN + P SP+D+G+GHI+PNK+LDPGL+YDA AED
Sbjct: 461 AAIRSALMTTANPLDNTQSPIKDVSNIDLGPGSPIDIGSGHIDPNKSLDPGLIYDAAAED 520
Query: 585 YIKLLCAMNYKPEQIRIFTKSSQKCNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTV 644
Y+KLLCAMNY +QI+I T S+ C N+SLDLNYPSFI +F DS S EK+V EF RTV
Sbjct: 521 YVKLLCAMNYTEKQIQIITNSTYNCANQSLDLNYPSFIAYFLGGDSDS-EKIVHEFQRTV 579
Query: 645 TNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSIS 704
TN E ++YTAKLT ++G+ V VEP++LVF ++YEK SYKLTLEGPK +++DVV+GS+S
Sbjct: 580 TNVGEAVSSYTAKLTPMNGINVTVEPKKLVFNKQYEKLSYKLTLEGPKSMKEDVVHGSLS 639
Query: 705 WVDDDGRYEVRSPIVATNLV 724
WV D+G+Y VRSPIVATNLV
Sbjct: 640 WVHDEGKYVVRSPIVATNLV 659
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443421|ref|XP_002267740.1| PREDICTED: subtilisin-like protease [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/732 (61%), Positives = 566/732 (77%), Gaps = 9/732 (1%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCSVSESSKATATSSTISSKLVYTYANSIHGFSATLTVSE 60
MD+SAMPK +SS +TW+ ++ ++S+ S A T ++KL+Y+Y +SIHGFSA LT SE
Sbjct: 36 MDSSAMPKPFSSHHTWFSAIVSAISDDS---APPPTTTNKLIYSYTSSIHGFSAILTPSE 92
Query: 61 LETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDTGIWPE 120
LE+LK PGY+SSTPD PL +HTTHT +FLGLS GAWPAS+YG GVIIG+VDTG+WPE
Sbjct: 93 LESLKNTPGYLSSTPDFPLKLHTTHTPQFLGLSYDHGAWPASSYGDGVIIGVVDTGVWPE 152
Query: 121 SQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPR 180
S+S D GM++VP RWKGEC +G QFNSSLCNKKLIGARFFNKG AN P M+S R
Sbjct: 153 SESLKDNGMSEVPARWKGECETGTQFNSSLCNKKLIGARFFNKGFTANKPNSNTVMSSCR 212
Query: 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWR-HGVYSSDVVAA 239
D GHGTHTSS AAG++V G+SYFGY +G+A G+APRA +AMYK +W VYSSDV+AA
Sbjct: 213 DTDGHGTHTSSTAAGSFVNGASYFGYGSGVASGLAPRAHLAMYKVVWNLSQVYSSDVLAA 272
Query: 240 IDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLIN 299
ID+A+QDGVD+LSLSLGL + L ++ I++A F AMEKG+ V ASAGN GP + T+ N
Sbjct: 273 IDRAIQDGVDILSLSLGLGGSQ--LNENPISIACFTAMEKGIFVAASAGNSGPLFGTIEN 330
Query: 300 GAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKK 359
GAPWL+TVGAGTIDREF G LTLG+GV+I+F SLYPG+ SP L F+D C+S+ L++
Sbjct: 331 GAPWLVTVGAGTIDREFHGVLTLGDGVRISFPSLYPGDCSPKAKPLVFLDGCESMAILER 390
Query: 360 VINSIVVCRED-SSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTI 418
V + IVVCR+ S+ QIDN + VL AVFISN + + Y RS FPAAFI + DG+T+
Sbjct: 391 VQDKIVVCRDGLMSLDDQIDNVRNSKVLAAVFISNFSFSDFYTRSEFPAAFIGIMDGKTV 450
Query: 419 IDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASW 478
IDYI K +P GS +F+KT +GTKPAP VD+YSSRGPF CP++ KPDILAPG+ VLASW
Sbjct: 451 IDYINKSSDPIGSTEFQKTALGTKPAPKVDAYSSRGPFAYCPSVLKPDILAPGTSVLASW 510
Query: 479 SPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS- 537
SP+S V + +FN++SGTSMA PHVAGVA L++AAHPDWSPAAIRSA++TT +
Sbjct: 511 SPLSPVFAGHDRQWFGSFNILSGTSMAAPHVAGVAALVRAAHPDWSPAAIRSAIMTTTTD 570
Query: 538 PLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPE 597
+DNT++ IK+ N N PA+PLDMGAG INPNKAL+PGL+Y+ATA+DYI LLC M
Sbjct: 571 SIDNTMNPIKNNLNLNSPATPLDMGAGLINPNKALEPGLIYNATAQDYINLLCGMKLTKR 630
Query: 598 QIRIFTK-SSQKCNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTA 656
+I++ T+ SS KC N SLDLNYPSFI +FND SS +E++V+ F RT+TN E G++YTA
Sbjct: 631 EIQVITRASSHKCLNPSLDLNYPSFIAYFNDVGSSPNEQIVQVFSRTLTNVGEGGSSYTA 690
Query: 657 KLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVRS 716
KLT ++GLKV VEPR+LVF KYEK SYKL LEGPK +E+DVV+G +SWV DG+Y VRS
Sbjct: 691 KLTPMEGLKVKVEPRKLVFSHKYEKLSYKLILEGPKWMEEDVVHGHLSWVSSDGKYVVRS 750
Query: 717 PIVATNLVPQSP 728
PIVAT+++ P
Sbjct: 751 PIVATSIILGDP 762
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458649|ref|XP_002282833.1| PREDICTED: subtilisin-like protease [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/727 (60%), Positives = 557/727 (76%), Gaps = 6/727 (0%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCSVSESSKATAT--SSTISSKLVYTYANSIHGFSATLTV 58
MD SAMPKA+S ++WY+ L SVS+++ ATA SS+ SSKL+Y+Y N IHGFSA L+
Sbjct: 33 MDLSAMPKAFSGHHSWYMATLASVSDNTAATANPYSSSYSSKLIYSYTNVIHGFSAILSP 92
Query: 59 SELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDTGIW 118
SELE LK PGYISS PD P+ TTH+++FLGL+S SGAWP SNYGK VIIGLVDTGIW
Sbjct: 93 SELEALKSFPGYISSFPDLPVKADTTHSAKFLGLNSNSGAWPMSNYGKDVIIGLVDTGIW 152
Query: 119 PESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNS 178
PES+SF+D+GM ++P RWKG C SG QFNSS+CNKKLIGARFFNKGLIA +P + + MNS
Sbjct: 153 PESESFNDDGMTEIPSRWKGACESGTQFNSSMCNKKLIGARFFNKGLIAKHPNVSISMNS 212
Query: 179 PRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVA 238
RD GHGTHTS+ AAGNYV+G+SYFGY +G A G+APRA VAMYKA+W G +SD++A
Sbjct: 213 TRDTDGHGTHTSTTAAGNYVEGASYFGYGSGTASGMAPRARVAMYKALWDVGAVASDIIA 272
Query: 239 AIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLI 298
AIDQA+ DGVDV+SLSLG L+G+ L +D IA+ATFAA+EK + V SAGN+GP TL
Sbjct: 273 AIDQAIIDGVDVMSLSLG--LDGVLLYEDPIAIATFAALEKDIFVATSAGNEGPFLGTLH 330
Query: 299 NGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELK 358
NG PW+LTV A T+DR+F G +TLGNGV + SLYP NSS SQ+ + FM +C+ +TELK
Sbjct: 331 NGIPWVLTVAASTMDRQFSGIVTLGNGVSVIGSSLYPANSSFSQIPIVFMGSCEDLTELK 390
Query: 359 KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417
KV IVVC+ ++ S+S Q+DNA A V G VFI++ +E +++SSFPA F+N +G+
Sbjct: 391 KVGFKIVVCQDQNDSLSIQVDNANTARVAGGVFITDYPDIEFFMQSSFPATFVNPENGKV 450
Query: 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLAS 477
++DYIK P S++F KT++G K AP + +YSSRGP SCP + KPD+ APG+L+LAS
Sbjct: 451 VMDYIKTSSEPKASIEFSKTILGAKRAPRMATYSSRGPSPSCPVVLKPDLTAPGALILAS 510
Query: 478 WSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537
W I+ VA+V S LLYS FNL+SGTSMA PH AGV LLK AHP+WSPAAIRSA++TT+
Sbjct: 511 WPKINPVADVNSRLLYSEFNLLSGTSMACPHAAGVGALLKGAHPEWSPAAIRSAMMTTSD 570
Query: 538 PLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPE 597
LDNTL+ IK ++N PASPL MG+GHINPNKALDPG +YD ED+I LLCA+NY +
Sbjct: 571 SLDNTLNPIKGIGDDNQPASPLAMGSGHINPNKALDPGFIYDVNLEDHINLLCALNYSTK 630
Query: 598 QIRIFTKSSQ-KCNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTA 656
QI+I T+SS C++ SLDLNYPSFI F+ DS SD K V+EF RTVTN E + Y A
Sbjct: 631 QIQIITRSSSYTCSDPSLDLNYPSFIASFDANDSRSDSKTVQEFRRTVTNVGEAMSTYNA 690
Query: 657 KLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVRS 716
KLTG+DG +V V P +LVFK KY+K SYKL +EGP L+++ V +GS+SWVD + ++ VRS
Sbjct: 691 KLTGMDGFQVSVVPDKLVFKDKYQKLSYKLRIEGPSLMKETVAFGSLSWVDVEAKHVVRS 750
Query: 717 PIVATNL 723
PIVAT L
Sbjct: 751 PIVATRL 757
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|253740260|gb|ACT34764.1| subtilisin-like protease preproenzyme [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/728 (60%), Positives = 543/728 (74%), Gaps = 7/728 (0%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCSVSESSK---ATATSSTISSKLVYTYANSIHGFSATLT 57
MD SAMP A+SS WYL L SVS+SS A+ +S SSK+VY Y N+IHGFSA+L+
Sbjct: 33 MDLSAMPTAFSSHQNWYLTTLASVSDSSSLGTASNRNSLSSSKIVYAYTNAIHGFSASLS 92
Query: 58 VSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDTGI 117
SELE +K PGY+SST D + TTHTS+FLGL+S SG WP S+YGK VI+GLVDTGI
Sbjct: 93 SSELEVIKNSPGYLSSTKDMTVKSDTTHTSQFLGLNSNSGVWPKSDYGKDVIVGLVDTGI 152
Query: 118 WPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMN 177
WPES+S++D GM +VP RWKGEC SG QFNSSLCNKKLIGAR+FNKGLIA NP + + MN
Sbjct: 153 WPESKSYTDNGMTEVPSRWKGECESGTQFNSSLCNKKLIGARYFNKGLIATNPNITILMN 212
Query: 178 SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVV 237
S RD GHGTHTSS AAG++V+ SYFGYA G A G+AP+A VAMYKA+W G SD++
Sbjct: 213 SARDTDGHGTHTSSTAAGSHVESVSYFGYAPGAATGMAPKAHVAMYKALWDEGTMLSDIL 272
Query: 238 AAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTL 297
AAIDQA++DGVD+LSLSLG ++G L DD +A+ATFAAMEKG+ V SAGN+GP TL
Sbjct: 273 AAIDQAIEDGVDILSLSLG--IDGRALYDDPVAIATFAAMEKGIFVSTSAGNEGPDGQTL 330
Query: 298 INGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTEL 357
NG PW+LTV AGT+DREF G+LTLGNGV + SLYPGNSS S+ S+ F+ C EL
Sbjct: 331 HNGTPWVLTVAAGTVDREFIGTLTLGNGVSVTGLSLYPGNSSSSESSIVFLKTCLEEKEL 390
Query: 358 KKVINSIVVCRE-DSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQ 416
+K N I +C + + SIS Q+ N + V G VFI+N LE Y++S FPA F+N DG
Sbjct: 391 EKNANKIAICYDTNGSISDQLYNVRNSKVAGGVFITNYTDLEFYLQSEFPAVFLNFEDGD 450
Query: 417 TIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLA 476
+++YIK +P L+F+ T +GTKPAP V SYSSRGP SCP I KPD++APG+L+LA
Sbjct: 451 KVLEYIKNSHSPKARLEFQVTHLGTKPAPKVASYSSRGPSQSCPFILKPDLMAPGALILA 510
Query: 477 SWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTA 536
SW S ++ SG L+SNFN++SGTSM+ PH AGVA LLK AHP WSPAAIRSA++TTA
Sbjct: 511 SWPQKSPATKINSGELFSNFNIISGTSMSCPHAAGVASLLKGAHPKWSPAAIRSAMMTTA 570
Query: 537 SPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKP 596
LDNT I+D NN ASPL MGAGHINPNKALDPGL+YD T++DYI LLCA+++
Sbjct: 571 DALDNTQRPIRDIGRNNNAASPLAMGAGHINPNKALDPGLIYDITSQDYINLLCALDFTS 630
Query: 597 EQIRIFTKSSQ-KCNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYT 655
+QI+ T+SS C+N SLDLNYPSFI +FN S SD K ++EF RTVTN + + YT
Sbjct: 631 QQIKAITRSSAYSCSNPSLDLNYPSFIGYFNYNSSKSDPKRIQEFQRTVTNVGDGMSVYT 690
Query: 656 AKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVR 715
AKLT +D KV V P +LVFK+KYEKQSYKL +EGP L++ +VYGS+SWV+ G+Y V+
Sbjct: 691 AKLTSMDEYKVSVAPDKLVFKEKYEKQSYKLRIEGPLLVDNYLVYGSLSWVETSGKYVVK 750
Query: 716 SPIVATNL 723
SPIVAT +
Sbjct: 751 SPIVATTI 758
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137566|ref|XP_002327158.1| predicted protein [Populus trichocarpa] gi|222835473|gb|EEE73908.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/737 (56%), Positives = 537/737 (72%), Gaps = 13/737 (1%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCSVSE---SSKATATSSTI--SSKLVYTYANSIHGFSAT 55
MD S MPK++S + WYL L SVS+ SS A A+ +T+ SSKL+Y+Y + ++GFSA+
Sbjct: 36 MDLSVMPKSFSGQHHWYLSTLASVSDVADSSTARASEATLTASSKLLYSYTHVVNGFSAS 95
Query: 56 LTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDT 115
LT SELE LK PGYISS D P+ TTH+ ++LGL+ S AW ASNYG G+IIGLVDT
Sbjct: 96 LTPSELEALKTSPGYISSIKDLPVKHDTTHSPKYLGLTPQSPAWKASNYGDGIIIGLVDT 155
Query: 116 GIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVR 175
G WPES+S++D GM ++P WKGEC SG QFNS +CNKKLIGARFFNKGLIA P + +
Sbjct: 156 GAWPESESYNDHGMPEIPKTWKGECESGTQFNSLMCNKKLIGARFFNKGLIAKYPNITIS 215
Query: 176 MNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSD 235
MNS RD GHGTHTS+ AAGN+V+G+SYFGYA G A G+APRA VAMYKA+W G Y++D
Sbjct: 216 MNSTRDTEGHGTHTSTTAAGNFVEGASYFGYAKGTASGVAPRAHVAMYKALWDEGSYTTD 275
Query: 236 VVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW 295
++AAIDQA+ DGVDVLS+SLG L+G+ L +D IA+ATFAA+EK + V SAGN+GP
Sbjct: 276 LIAAIDQAISDGVDVLSMSLG--LDGLPLNEDPIALATFAAIEKNIFVSTSAGNEGPFRE 333
Query: 296 TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVT 355
TL NG PW+LTV AGT+DR F+ LTLGNG+ I S Y G+SS S V + FMD C ++
Sbjct: 334 TLHNGIPWVLTVAAGTLDRGFDAVLTLGNGISITGSSFYLGSSSFSDVPIVFMDDCHTMR 393
Query: 356 ELKKVINSIVVCR---EDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINV 412
EL K+ IVVC + + +S Q++N +A V VFI+N E +I + FP +++
Sbjct: 394 ELIKIGPKIVVCEGAFDSNDLSDQVENVSSANVTAGVFITNFTDTEEFIGNGFPVVIVSL 453
Query: 413 NDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGS 472
DG+TIIDYIK ++P S +FRKT +G +PAP + SYSSRGP SCP + KPDI+APGS
Sbjct: 454 KDGKTIIDYIKNSNSPQASAEFRKTDLGIEPAPRLTSYSSRGPSTSCPLVMKPDIMAPGS 513
Query: 473 LVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSAL 532
L+LA+W +V S ++SNFN++SGTSMA PH AGVA LL+ AHPDWSPAA+RSA+
Sbjct: 514 LILAAWPQNIAVDSNNSQPMFSNFNILSGTSMACPHAAGVAALLRKAHPDWSPAAMRSAM 573
Query: 533 VTTASPLDNTLSHIKDASNNNF--PASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLC 590
+TTA +DNT+ IKD N PA+PLDMGAG +NPNKALDPGL+YD + DY++LLC
Sbjct: 574 ITTADTMDNTMEPIKDIGFGNRINPATPLDMGAGQVNPNKALDPGLIYDVNSTDYVRLLC 633
Query: 591 AMNYKPEQIRIFTKSSQ-KCNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEE 649
A N+ +QI++ T+SS C+N S DLNYPSFI +FND S S+ +V+EF RTVTN E
Sbjct: 634 ATNFTEKQIQVITRSSSIDCSNPSSDLNYPSFIAYFNDKKSPSNLTIVREFHRTVTNVGE 693
Query: 650 VGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDD 709
YTA +T + GLK+ V P +L FK KYEK SYKLT+EGP LL++ V +GS++W D
Sbjct: 694 GTCIYTASVTPMSGLKINVIPDKLEFKTKYEKLSYKLTIEGPALLDETVTFGSLNWADAG 753
Query: 710 GRYEVRSPIVATNLVPQ 726
G++ VRSPI AT+L P+
Sbjct: 754 GKHVVRSPIAATSLSPE 770
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137570|ref|XP_002327159.1| predicted protein [Populus trichocarpa] gi|222835474|gb|EEE73909.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/740 (58%), Positives = 541/740 (73%), Gaps = 16/740 (2%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCSVSE-SSKATATSS-----TISSKLVYTYANSIHGFSA 54
MD SAMPK++S + WYL L SV + S ++TA +S T SSKL+Y+Y + I+GFSA
Sbjct: 1 MDLSAMPKSFSGQHHWYLSTLASVFDVSDRSTARASPATYLTASSKLLYSYTHVINGFSA 60
Query: 55 TLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASNYGKGVIIGLVD 114
+LT SELE LKK PGYISS D P+ TTH+++FLGL+ S AW ASN G G+IIGLVD
Sbjct: 61 SLTPSELEALKKSPGYISSIKDLPVKHDTTHSTKFLGLAPQSPAWKASNLGDGIIIGLVD 120
Query: 115 TGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174
+G+WPES+S++D GM+++P RWKG C SG QFNSS+CNKKLIGARFFNKGLIANNP + +
Sbjct: 121 SGVWPESESYNDHGMSEIPKRWKGGCQSGAQFNSSMCNKKLIGARFFNKGLIANNPNITI 180
Query: 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSS 234
+NS RD GHGTHTSS AAGNYV+G+SYFGYA G A G+APRA VAMYKA+W + Y++
Sbjct: 181 SVNSTRDTDGHGTHTSSTAAGNYVEGASYFGYAKGTANGVAPRAHVAMYKALWDNHAYTT 240
Query: 235 DVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY 294
DV+AAIDQA+ DGVDVLSLSLG G+ L +D +A+ATFAA EK V V SAGN+GP Y
Sbjct: 241 DVIAAIDQAISDGVDVLSLSLGFG--GVPLNEDPLALATFAATEKNVFVSTSAGNEGPFY 298
Query: 295 WTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSV 354
TL NG PW+LTV AGT+DREF+ LTLGNG+ I S Y G+SS S+V L FMD CDS
Sbjct: 299 ETLHNGIPWVLTVAAGTLDREFDAVLTLGNGISITGSSFYLGSSSFSEVPLVFMDRCDS- 357
Query: 355 TELKKVINSIVVCR---EDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFIN 411
EL K IVVC+ E + +S Q++N AGV VFI+N E +I SFP +N
Sbjct: 358 -ELIKTGPKIVVCQGAYESNDLSDQVENVRNAGVTAGVFITNFTDTEEFIGDSFPVVIVN 416
Query: 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPG 471
+ DG+TIIDYIK ++P S +FRKT +G +PAP V SYSSRGP SCP + KPDI+APG
Sbjct: 417 LKDGKTIIDYIKSSNSPQASAEFRKTNLGIEPAPRVASYSSRGPSSSCPLVLKPDIMAPG 476
Query: 472 SLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSA 531
+L+LA+W SV S ++SNF ++SGTSMA PH AGVA LL+ HPDWSPAAIRSA
Sbjct: 477 ALILAAWPQNVSVDLNDSQPIFSNFKILSGTSMACPHAAGVAALLREVHPDWSPAAIRSA 536
Query: 532 LVTTASPLDNTLSHIKDASNNNF--PASPLDMGAGHINPNKALDPGLVYDATAEDYIKLL 589
++TTA DNT+ IKD + N PASPLDMGAG +NPNKALDPGL+YDA + DY++LL
Sbjct: 537 MMTTADITDNTMEPIKDIGSGNRINPASPLDMGAGQVNPNKALDPGLIYDANSTDYVRLL 596
Query: 590 CAMNYKPEQIRIFTKSSQ-KCNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAE 648
CA N+ ++I++ T+SS C+N S DLNYPSFI +FN+ S S+ V+EF RTVTN
Sbjct: 597 CATNFTEKEIQVITRSSSTDCSNPSSDLNYPSFIAYFNERFSPSNLTTVREFHRTVTNVG 656
Query: 649 EVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDD 708
E + YT +T + GLKV V P +L FK KYEK SYKLT+EGP LL++ V +G +SW D
Sbjct: 657 EGISTYTVSVTPMSGLKVNVMPDKLEFKTKYEKLSYKLTIEGPALLDEAVTFGYLSWADA 716
Query: 709 DGRYEVRSPIVATNLVPQSP 728
G++ VRSPIVAT L+P P
Sbjct: 717 GGKHVVRSPIVATTLIPDDP 736
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438740|ref|XP_002277899.1| PREDICTED: subtilisin-like protease [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/728 (58%), Positives = 531/728 (72%), Gaps = 9/728 (1%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCSVSESSKAT--ATSSTISSKLVYTYANSIHGFSATLTV 58
MD+SAMPK +S + WY ML SVS++S T A + + ++KL+YTY+NSI+GFSA+LT+
Sbjct: 38 MDSSAMPKPFSGHHGWYSSMLSSVSDASTPTGAAVTPSTTAKLIYTYSNSINGFSASLTL 97
Query: 59 SELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDTGIW 118
SELE LKK PGY+SSTPD+ + HTT + EFLGL SGAW ASNYG GVIIGLVD+GIW
Sbjct: 98 SELEALKKSPGYLSSTPDQFVQPHTTRSHEFLGLRRGSGAWTASNYGNGVIIGLVDSGIW 157
Query: 119 PESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNS 178
PES SF DEGM K PPRWKG C++ F SS+CN K+IGAR++N+G +A P + MNS
Sbjct: 158 PESASFKDEGMGKPPPRWKGACVADANFTSSMCNNKIIGARYYNRGFLAKYPDETISMNS 217
Query: 179 PRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVA 238
RD GHGTHTSS AAG +V+G SYFGYA G A G+APRA +A+YKAIW + SD +A
Sbjct: 218 SRDSEGHGTHTSSTAAGAFVEGVSYFGYANGTAAGMAPRAWIAVYKAIWSGRIAQSDALA 277
Query: 239 AIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLI 298
AIDQA++DGVD+LSLS N + L + I++A F AMEKG+ V ASAGNDG ++ TL
Sbjct: 278 AIDQAIEDGVDILSLSFSFGNNSLNL--NPISIACFTAMEKGIFVAASAGNDGNAFGTLS 335
Query: 299 NGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELK 358
NG PW+ TVGAGT+DR+ G LTLGNGVQI F S YPGN SP LA + C S E
Sbjct: 336 NGEPWVTTVGAGTMDRDLYGILTLGNGVQIPFPSWYPGNPSPQNTPLA-LSECHSSEEYL 394
Query: 359 KVINSIVVC-REDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417
K+ IVVC + + +Q A A AVFIS AL R+ +P+AF+ + DGQT
Sbjct: 395 KIRGYIVVCIASEFVMETQAYYARQANATAAVFISEKALFLDDTRTEYPSAFLLIKDGQT 454
Query: 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLAS 477
+IDYI K +P S+ F+KT +GTKPAPMVD YSSRGPF+ CPN+ KPDILAPG+ VLA+
Sbjct: 455 VIDYINKSSDPRASMAFQKTEMGTKPAPMVDIYSSRGPFIQCPNVLKPDILAPGTSVLAA 514
Query: 478 WSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537
W + V++ YS+FN++SGTSMAT HVAGVA L+KA HP+WSPAAIRSAL+TTA+
Sbjct: 515 WPSNTPVSDNFYHQWYSDFNVLSGTSMATAHVAGVAALVKAVHPNWSPAAIRSALMTTAN 574
Query: 538 PLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPE 597
LDNT + +K+ SN+ A LDMGAG +NPNKALDPGL+Y+ATAEDY++LLCAM + +
Sbjct: 575 TLDNTQNPVKEVSNDTVTA--LDMGAGQVNPNKALDPGLIYNATAEDYVQLLCAMGFTAK 632
Query: 598 QIRIFTKSSQKCNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTAK 657
+I+ T+SS +C N SLDLNYPSFI +FND S+ DE +V+ F RTVTN E + YTA+
Sbjct: 633 EIQKITRSSYECLNPSLDLNYPSFIAYFNDESSAPDE-LVQVFHRTVTNVGEGQSNYTAE 691
Query: 658 LTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVRSP 717
LT + GLKV V+P +LVF K+E SY LTLEGPK + + +VYG +SWV D G+Y VRSP
Sbjct: 692 LTPLKGLKVKVDPEKLVFNCKHETLSYNLTLEGPKSMTEYLVYGHLSWVSDGGKYVVRSP 751
Query: 718 IVATNLVP 725
IVAT + P
Sbjct: 752 IVATRMDP 759
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118487593|gb|ABK95622.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/740 (58%), Positives = 540/740 (72%), Gaps = 16/740 (2%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCSVSE-SSKATATSS-----TISSKLVYTYANSIHGFSA 54
MD SAMPK++S + WYL L SV + S ++TA +S T SSKL+Y+Y + I+GFSA
Sbjct: 36 MDLSAMPKSFSGQHHWYLSTLASVFDVSDRSTARASPATYLTASSKLLYSYTHVINGFSA 95
Query: 55 TLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASNYGKGVIIGLVD 114
+LT SELE LKK PGYISS D P+ TTH+++FLGL+ S AW ASN G G+IIGLVD
Sbjct: 96 SLTPSELEALKKSPGYISSIKDLPVKHDTTHSTKFLGLAPQSPAWKASNLGDGIIIGLVD 155
Query: 115 TGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174
+G+WPES+S++D GM+++P RWKG C SG QFNSS+CNKKLIGARFFNKGLIANNP + +
Sbjct: 156 SGVWPESESYNDHGMSEIPKRWKGGCQSGAQFNSSMCNKKLIGARFFNKGLIANNPNITI 215
Query: 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSS 234
+NS RD GHGTHTSS AAGNYV+G+SYFGYA G A G+APRA VAMYKA+W + Y++
Sbjct: 216 SVNSTRDTDGHGTHTSSTAAGNYVEGASYFGYAKGTANGVAPRAHVAMYKALWDNHAYTT 275
Query: 235 DVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY 294
DV+AAIDQA+ DGVDVLSLSLG G+ L +D +A+ATFAA EK V V SAGN+GP Y
Sbjct: 276 DVIAAIDQAISDGVDVLSLSLG--FGGVPLNEDPLALATFAATEKNVFVSTSAGNEGPFY 333
Query: 295 WTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSV 354
TL NG PW+LTV AGT+DREF+ LTLGNG+ I S Y G+SS S+V L FMD CDS
Sbjct: 334 ETLHNGIPWVLTVAAGTLDREFDAVLTLGNGISITGSSFYLGSSSFSEVPLVFMDRCDS- 392
Query: 355 TELKKVINSIVVCR---EDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFIN 411
EL K IVVC+ E + +S Q++N AGV VFI+N E +I SFP +N
Sbjct: 393 -ELIKTGPKIVVCQGAYESNDLSDQVENVRNAGVTAGVFITNFTDTEEFIGDSFPVVIVN 451
Query: 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPG 471
+ DG+TIIDYIK ++P S +FRKT +G +PAP V SYSSRGP SCP + KPDI+APG
Sbjct: 452 LKDGKTIIDYIKSSNSPQASAEFRKTNLGIEPAPRVASYSSRGPSSSCPLVLKPDIMAPG 511
Query: 472 SLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSA 531
+L+LA+W SV S ++SNF ++SGTSMA PH AGVA LL+ HPDWSPAAIRSA
Sbjct: 512 ALILAAWPQNVSVDLNDSQPIFSNFKILSGTSMACPHAAGVAALLREVHPDWSPAAIRSA 571
Query: 532 LVTTASPLDNTLSHIKDASNNNF--PASPLDMGAGHINPNKALDPGLVYDATAEDYIKLL 589
++TTA DNT+ IKD + N PASPLDMGAG +NPNKALDPGL+YDA + DY++LL
Sbjct: 572 MMTTADITDNTMEPIKDIGSGNRINPASPLDMGAGQVNPNKALDPGLIYDANSTDYVRLL 631
Query: 590 CAMNYKPEQIRIFTKSSQ-KCNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAE 648
CA N+ ++I++ T+SS C+N S DLNYPSFI +FN+ S S+ V EF RTVTN
Sbjct: 632 CATNFTEKEIQVITRSSSTDCSNPSSDLNYPSFIAYFNERFSPSNLTTVCEFHRTVTNVG 691
Query: 649 EVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDD 708
E + YT +T + GLKV V P +L FK KYEK SYKLT+EGP LL++ V +G +SW D
Sbjct: 692 EGISTYTVSVTPMSGLKVNVMPDKLEFKTKYEKLSYKLTIEGPALLDEAVTFGYLSWADA 751
Query: 709 DGRYEVRSPIVATNLVPQSP 728
G++ VRSPIVAT L+P P
Sbjct: 752 GGKHVVRSPIVATTLIPDDP 771
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 728 | ||||||
| UNIPROTKB|Q6I5K9 | 761 | OSJNBb0088F07.10 "Putative sub | 0.964 | 0.922 | 0.490 | 6.1e-181 | |
| UNIPROTKB|Q8S1N3 | 760 | P0677H08.26 "Os01g0868900 prot | 0.968 | 0.927 | 0.471 | 7.4e-169 | |
| TAIR|locus:2155583 | 736 | AT5G67090 "AT5G67090" [Arabido | 0.864 | 0.854 | 0.477 | 1.7e-155 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.907 | 0.873 | 0.421 | 3.3e-134 | |
| TAIR|locus:2064696 | 754 | AT2G05920 "AT2G05920" [Arabido | 0.912 | 0.880 | 0.408 | 8.5e-134 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.445 | 0.418 | 0.417 | 7e-128 | |
| UNIPROTKB|Q94H95 | 764 | OSJNBb0048A17.11 "cDNA clone:J | 0.924 | 0.880 | 0.409 | 2e-127 | |
| TAIR|locus:2025457 | 774 | SBTI1.1 "AT1G01900" [Arabidops | 0.921 | 0.866 | 0.395 | 1.3e-121 | |
| UNIPROTKB|Q8LSS2 | 773 | OSJNBa0011L09.20 "Subtilisin N | 0.429 | 0.404 | 0.419 | 5.1e-121 | |
| TAIR|locus:2087512 | 777 | AT3G14067 "AT3G14067" [Arabido | 0.888 | 0.832 | 0.395 | 2.9e-119 |
| UNIPROTKB|Q6I5K9 OSJNBb0088F07.10 "Putative subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1756 (623.2 bits), Expect = 6.1e-181, P = 6.1e-181
Identities = 359/732 (49%), Positives = 474/732 (64%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCXXXXXXXXXXXXXXXXXXLVYTYANSIHGFSATLTVSE 60
MD SAMP+A++S +WY L + Y Y N++HGF+A +T E
Sbjct: 42 MDKSAMPRAFASQASWYESTLAAAAPGAD-----------MFYVYDNAMHGFAARVTADE 90
Query: 61 LETLKKLPGYISSTPDRPLAVH--TTHTSEFLGLSSLSGA-WPASNYGKGVIIGLVDTGI 117
LE L+ G++S PD AV TTHT EFLG+S+ SG W AS YG+ VI+G+VDTG+
Sbjct: 91 LEKLRGSRGFVSCYPDDARAVRRDTTHTPEFLGVSASSGGLWEASEYGEDVIVGVVDTGV 150
Query: 118 WPESQSFSDEGMAKVPPRWKGECMSGVQFNSS-LCNKKLIGARFFNKGLIANNPKLKVRM 176
WPES SF D+G+ VP RWKG C SG F++ +CN+KL+GAR FNKGL+A L + +
Sbjct: 151 WPESASFRDDGLPPVPARWKGYCESGTAFDAGKVCNRKLVGARKFNKGLVAAT-NLTIAV 209
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDV 236
NSPRD GHGTHTSS AAG+ V G+S+FGYA G ARG+APRA VAMYKA+W G Y SD+
Sbjct: 210 NSPRDTDGHGTHTSSTAAGSPVAGASFFGYAPGTARGMAPRARVAMYKALWDEGTYPSDI 269
Query: 237 VAAIDQALQXXXXXXXXXXXXXXNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT 296
+AAIDQA+ N + D IA+ FAAM++GV V SAGNDGP
Sbjct: 270 LAAIDQAI--ADGVDVLSLSLGLNDVPFYRDPIAIGAFAAMQRGVFVSTSAGNDGPDPGF 327
Query: 297 LINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVS---LAFMDACDS 353
L NG PW LTV +GT DREF G + LG+G + +S+YPG SPS ++ F+ ACD+
Sbjct: 328 LHNGTPWTLTVASGTGDREFAGIVRLGDGTTVIGQSMYPG--SPSTIASSGFVFLGACDN 385
Query: 354 VTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVN 413
T L + + +V+C S+S+ I A +F+SN + E+ +FP ++
Sbjct: 386 DTALARNRDKVVLCDATDSLSAAIFAVQVAKARAGLFLSNDSFRELSEHFTFPGVILSPQ 445
Query: 414 DGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSL 473
D ++ YIK+ P S++F T++GTKPAP+V +YSSRGP SCP + KPD+LAPGSL
Sbjct: 446 DAPALLQYIKRSRAPRASIKFGVTILGTKPAPVVATYSSRGPSASCPTVLKPDVLAPGSL 505
Query: 474 VLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALV 533
+LASW SV+ V S LYS FN++SGTSM+ PH +GVA L+KA HP+WSPAA+RSA++
Sbjct: 506 ILASWPENVSVSTVGSQQLYSRFNVISGTSMSCPHASGVAALIKAVHPEWSPAAVRSAMM 565
Query: 534 TTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMN 593
TTAS +DNT + IKD N A+PL MG+GHI+PN+A+DPGLVYDA A+DY+KL+CAMN
Sbjct: 566 TTASAVDNTNAPIKDMGRANRGATPLAMGSGHIDPNRAVDPGLVYDAGADDYVKLMCAMN 625
Query: 594 YKPEQIRIFTKSSQK---CNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEV 650
Y QI+ +S C +LDLNYPSFI FF D + + F R VTN +
Sbjct: 626 YTAAQIKTVAQSPSSAVDCAGATLDLNYPSFIAFF---DPGATAPAARTFTRAVTNVGDA 682
Query: 651 GTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKD-VVYGSISWVDDD 709
+Y+AK+ G+ GL V V P RLVF +K+E Q Y + + G + D V++GS++WVDD
Sbjct: 683 PASYSAKVKGLGGLTVSVSPERLVFGRKHETQKYTVVIRGQMKNKTDEVLHGSLTWVDDA 742
Query: 710 GRYEVRSPIVAT 721
G+Y VRSPIVAT
Sbjct: 743 GKYTVRSPIVAT 754
|
|
| UNIPROTKB|Q8S1N3 P0677H08.26 "Os01g0868900 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1642 (583.1 bits), Expect = 7.4e-169, P = 7.4e-169
Identities = 350/743 (47%), Positives = 470/743 (63%)
Query: 1 MDTSAMPKA------YSSLYTWYLFMLCXXXXXXXXXXXXXXXXXXLVYTYANSIHGFSA 54
MD SAMP +SL +WY L ++Y Y N++ GF+A
Sbjct: 31 MDKSAMPSGGGGGNGSTSLESWYAATL-----------RAAAPGARMIYVYRNAMSGFAA 79
Query: 55 TLTVSELETLKKLPGYISSTPDRPLAVH-TTHTSEFLGLSSLSGAWPASNYGKGVIIGLV 113
L+ + L + PG++SS D P+ TTHT EFLG+S G W ++YG GVI+G+V
Sbjct: 80 RLSAEQHARLSRSPGFLSSYLDAPVTRRDTTHTPEFLGVSGAGGLWETASYGDGVIVGVV 139
Query: 114 DTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSS-LCNKKLIGARFFNKGLIA--NNP 170
DTG+WPES S+ D+G+ VP RWKG C SG +F+ + CN+KLIGAR F+ GL A
Sbjct: 140 DTGVWPESGSYRDDGLPPVPARWKGYCESGTRFDGAKACNRKLIGARKFSAGLAAALGRR 199
Query: 171 KLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG 230
+ + +NSPRD GHGTHTSS AAG+ V G+SYFGYA G+ARG+APRA VA+YK ++ G
Sbjct: 200 NITIAVNSPRDTDGHGTHTSSTAAGSPVPGASYFGYAPGVARGMAPRARVAVYKVLFDEG 259
Query: 231 VYSSDVVAAIDQALQXXXXXXXXXXXXXXNGIFLEDDAIAVATFAAMEKGVLVVASAGND 290
Y++D+VAAIDQA+ N L D +A+ +FAAM+ G+ V SAGND
Sbjct: 260 GYTTDIVAAIDQAI--ADGVDVLSISLGLNNRPLHTDPVAIGSFAAMQHGIFVSTSAGND 317
Query: 291 GPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVS-LAFMD 349
GP L NGAPW LTV AGT+DREF G + LG+G + +SLY G+ +Q + L ++D
Sbjct: 318 GPGLSVLHNGAPWALTVAAGTVDREFSGIVELGDGTTVIGESLYAGSPPITQSTPLVYLD 377
Query: 350 ACDSVTELKKVINSIVVC-REDSSISSQIDNAVA--AGVLGAVFISNSALLEVYIRSSFP 406
+CD+ T +++ + IV+C + SS + Q+ A G +F++N ++ + +FP
Sbjct: 378 SCDNFTAIRRNRDKIVLCDAQASSFALQVAVQFVQDANAAGGLFLTNDPFRLLFEQFTFP 437
Query: 407 AAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPD 466
A ++ +DG I+ YI++ PT + FR T++ TKPAP +YSSRGP +SCP + KPD
Sbjct: 438 GALLSPHDGPAILRYIQRSGAPTAKIAFRATLLNTKPAPEAAAYSSRGPAVSCPTVLKPD 497
Query: 467 ILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPA 526
I+APGSLVLASW+ SVA V G + S FN++SGTSMATPH AGVA LL+A HP+WSPA
Sbjct: 498 IMAPGSLVLASWA--ESVAVV--GNMTSPFNIISGTSMATPHAAGVAALLRAVHPEWSPA 553
Query: 527 AIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYI 586
AIRSA++TTA+ LDNT I D + A+PL MG+GHI+PN+A DPGLVYDA DY+
Sbjct: 554 AIRSAMMTTAATLDNTGRSINDMARAGHAATPLAMGSGHIDPNRAADPGLVYDAVPGDYV 613
Query: 587 KLLCAMNYKPEQIRIFTKSSQ---KCNNRSL-DLNYPSFITFFNDYDSSSDEKVVKEFWR 642
+L+CAM Y IR T+ S C+ S DLNYPSFI +F+ +++ K F R
Sbjct: 614 ELMCAMGYNLSDIRAVTQWSTYAVNCSGASSPDLNYPSFIAYFDRRSAAAAAAETKTFVR 673
Query: 643 TVTNAEEVGTAYTAKLTG-IDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKD-VVY 700
VTN +Y AK+ G + GL V V P RLVF +K E Q Y L L G K+ D V++
Sbjct: 674 VVTNVGAGAASYRAKVKGNLGGLAVSVTPSRLVFGKKGETQKYTLVLRG-KIKGADKVLH 732
Query: 701 GSISWVDDDGRYEVRSPIVATNL 723
GS++WVDD G+Y VRSPIVAT L
Sbjct: 733 GSLTWVDDAGKYTVRSPIVATTL 755
|
|
| TAIR|locus:2155583 AT5G67090 "AT5G67090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1516 (538.7 bits), Expect = 1.7e-155, P = 1.7e-155
Identities = 324/678 (47%), Positives = 424/678 (62%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCXXXXXXXXXXXXXXXXXXLVYTYANSIHGFSATLTVSE 60
MD SA P +S +W+ L ++Y Y +S+HGFSA LT SE
Sbjct: 29 MDLSAKPLPFSDHRSWFSTTL---------TSVITNRKPKIIYAYTDSVHGFSAVLTNSE 79
Query: 61 LETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDTGIWPE 120
L+ LK PGY+S T D P+ +HTT + +F+GL+S SG WP SNYG G++IG++DTGIWP+
Sbjct: 80 LQRLKHKPGYVSFTKDLPVKLHTTFSPKFIGLNSTSGTWPVSNYGAGIVIGIIDTGIWPD 139
Query: 121 SQSFSDEGMAKVPPRWKGECMSGVQFNSS-LCNKKLIGARFFNKGLIANNPKL---KV-R 175
S SF D+G+ VP +WKG C +FNSS LCNKKLIGA+ FNKGL ANNP L K+ +
Sbjct: 140 SPSFHDDGVGSVPSKWKGAC----EFNSSSLCNKKLIGAKVFNKGLFANNPDLRETKIGQ 195
Query: 176 MNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSD 235
+SP D GHGTH ++IAAGN+VK +SYF YA G A GIAP A +A+YKA W G+YSSD
Sbjct: 196 YSSPYDTIGHGTHVAAIAAGNHVKNASYFSYAQGTASGIAPHAHLAIYKAAWEEGIYSSD 255
Query: 236 VVAAIDQALQXXXXXXXXXXXXXX------NGIFLEDDAIAVATFAAMEKGVLVVASAGN 289
V+AAIDQA++ +G LE+D IAVA+FAA++KGV VV S GN
Sbjct: 256 VIAAIDQAIRDGVHVISLSLGLSFEDDDDNDGFGLENDPIAVASFAAIQKGVFVVTSGGN 315
Query: 290 DGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMD 349
DGP YW+LINGAPW++TVGAGTI R+F+G+LT GN V +F SL+PG Q + +++
Sbjct: 316 DGPYYWSLINGAPWIMTVGAGTIGRQFQGTLTFGNRVSFSFPSLFPGEFPSVQFPVTYIE 375
Query: 350 ACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEV-YIRSSFPAA 408
+ SV E K + N IVVC E+ +I S++ + G V I++ L E I+ FP A
Sbjct: 376 S-GSV-ENKTLANRIVVCNENINIGSKLHQIRSTGAAAVVLITDKLLEEQDTIKFQFPVA 433
Query: 409 FINVNDGQTIIDYIKKC-DNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDI 467
FI +TI Y +N T L+FRKTVIGTKPAP V +YSSRGPF S P I KPDI
Sbjct: 434 FIGSKHRETIESYASSNKNNATAKLEFRKTVIGTKPAPEVGTYSSRGPFTSFPQILKPDI 493
Query: 468 LAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAA 527
LAPG+L+L++W + + ++ L+S FNL++GTSMA PHVAGVA L+K HP+WSP+A
Sbjct: 494 LAPGTLILSAWPSVEQITGTRALPLFSGFNLLTGTSMAAPHVAGVAALIKQVHPNWSPSA 553
Query: 528 IRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIK 587
I+SA++TTA LDN PL +GAGH++ NK L+PGL+YD T +D+I
Sbjct: 554 IKSAIMTTALTLDN----------------PLAVGAGHVSTNKVLNPGLIYDTTPQDFIN 597
Query: 588 LLC-AMNYKPEQIRIFTKS--SQKCNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTV 644
LC + I I T+S S C S LNYPS I +F D SS K+ K V
Sbjct: 598 FLCHEAKQSRKLINIITRSNISDACKKPSPYLNYPSIIAYFTS-DQSSP-KIFKRTLTNV 655
Query: 645 TNAEEVGTAYTAKLTGID 662
A+ L G++
Sbjct: 656 GEAKRSYIVRVRGLKGLN 673
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|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 297/705 (42%), Positives = 416/705 (59%)
Query: 41 LVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSS-LSGAW 99
L+YTY N+IHGFS LT E ++L PG IS P+ +HTT T FLGL + +
Sbjct: 65 LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLF 124
Query: 100 PASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGAR 159
P + V++G++DTG+WPES+S+SDEG +P WKG C +G F +SLCN+KLIGAR
Sbjct: 125 PEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGAR 184
Query: 160 FFNKGLIANNPKL--KVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
FF +G + + SPRD GHGTHTSS AAG+ V+G+S GYA+G ARG+APR
Sbjct: 185 FFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPR 244
Query: 218 ACVAMYKAIWRHGVYSSDVVAAIDQALQXXXXXXXXXXXXXXNGIFLEDDAIAVATFAAM 277
A VA+YK W G +SSD++AAID+A+ + + D +A+ FAAM
Sbjct: 245 ARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYR--DGVAIGAFAAM 302
Query: 278 EKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGN 337
E+G+LV SAGN GPS +L N APW+ TVGAGT+DR+F LGNG SL+ G
Sbjct: 303 ERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGE 362
Query: 338 SSPSQVSLAFMDA-----------CDSVTEL-KKVINSIVVCREDSSISSQI---DNAVA 382
+ P ++ L F+ A C + T + +KV IV+C D I++++ D A
Sbjct: 363 ALPDKL-LPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMC--DRGINARVQKGDVVKA 419
Query: 383 AGVLGAVFISNSALLEVYIRSS--FPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIG 440
AG +G + + +A E + + PA + G I Y+ NPT S+ TV+G
Sbjct: 420 AGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVG 479
Query: 441 TKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMS 500
KP+P+V ++SSRGP PNI KPD++APG +LA+W+ + + S FN++S
Sbjct: 480 VKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIIS 539
Query: 501 GTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLD 560
GTSM+ PHV+G+A LLK+ HP+WSPAAIRSAL+TTA + D + P++P D
Sbjct: 540 GTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGK-PSTPFD 598
Query: 561 MGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIRIFTKSSQKCN-NRSL---DL 616
GAGH++P A +PGL+YD T EDY+ LCA+NY QIR ++ + C+ ++S DL
Sbjct: 599 HGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADL 658
Query: 617 NYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTAKLTG-IDGLKVYVEPRRLVF 675
NYPSF + D K + RTVT+ GT Y+ K+T G+K+ VEP L F
Sbjct: 659 NYPSFAV---NVDGVGAYK----YTRTVTSVGGAGT-YSVKVTSETTGVKISVEPAVLNF 710
Query: 676 KQKYEKQSYKLT--LEGPKLLEKDVVYGSISWVDDDGRYEVRSPI 718
K+ EK+SY +T ++ K + +GSI W DG++ V SP+
Sbjct: 711 KEANEKKSYTVTFTVDSSKPSGSNS-FGSIEW--SDGKHVVGSPV 752
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| TAIR|locus:2064696 AT2G05920 "AT2G05920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1295 (460.9 bits), Expect = 8.5e-134, Sum P(2) = 8.5e-134
Identities = 287/702 (40%), Positives = 410/702 (58%)
Query: 41 LVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPL-AVHTTHTSEFLGLSSLSGAW 99
L+YTY S HGFSA L +E ++L I + PL +HTT T EFLGL+S G
Sbjct: 60 LLYTYTTSFHGFSAYLDSTEADSLLSSSNSILDIFEDPLYTLHTTRTPEFLGLNSEFGVH 119
Query: 100 PASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGAR 159
+ GVIIG++DTG+WPES+SF D M ++P +WKGEC SG F+S LCNKKLIGAR
Sbjct: 120 DLGSSSNGVIIGVLDTGVWPESRSFDDTDMPEIPSKWKGECESGSDFDSKLCNKKLIGAR 179
Query: 160 FFNKGL-IANNPKLKVRMNS--PRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAP 216
F+KG +A+ + S PRD GHGTHTS+ AAG+ V+ +S+ GYA G ARG+A
Sbjct: 180 SFSKGFQMASGGGFSSKRESVSPRDVDGHGTHTSTTAAGSAVRNASFLGYAAGTARGMAT 239
Query: 217 RACVAMYKAIWRHGVYSSDVVAAIDQALQXXXXXXXXXXXXXXNGIFLEDDAIAVATFAA 276
RA VA YK W G + SD++AA+D+A+ + D IA+ F+A
Sbjct: 240 RARVATYKVCWSTGCFGSDILAAMDRAILDGVDVLSLSLGGGSAPYYR--DTIAIGAFSA 297
Query: 277 MEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPG 336
ME+GV V SAGN GP+ ++ N APW++TVGAGT+DR+F LGNG ++ SLY G
Sbjct: 298 MERGVFVSCSAGNSGPTRASVANVAPWVMTVGAGTLDRDFPAFANLGNGKRLTGVSLYSG 357
Query: 337 -NSSPSQVSLAFMDACDSVTEL-------KKVINS-IVVCREDSSISSQIDN-AVA--AG 384
+ L + S + L ++ IVVC D ++++++ AV AG
Sbjct: 358 VGMGTKPLELVYNKGNSSSSNLCLPGSLDSSIVRGKIVVC--DRGVNARVEKGAVVRDAG 415
Query: 385 VLGAVFISNSALLEVYIRSS--FPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTK 442
LG + + +A E + S PA + G + +Y+K PT L F+ TV+ K
Sbjct: 416 GLGMIMANTAASGEELVADSHLLPAIAVGKKTGDLLREYVKSDSKPTALLVFKGTVLDVK 475
Query: 443 PAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGT 502
P+P+V ++SSRGP P I KPD++ PG +LA WS + + FN+MSGT
Sbjct: 476 PSPVVAAFSSRGPNTVTPEILKPDVIGPGVNILAGWSDAIGPTGLDKDSRRTQFNIMSGT 535
Query: 503 SMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMG 562
SM+ PH++G+AGLLKAAHP+WSP+AI+SAL+TTA LDNT + + DA++N+ ++P G
Sbjct: 536 SMSCPHISGLAGLLKAAHPEWSPSAIKSALMTTAYVLDNTNAPLHDAADNSL-SNPYAHG 594
Query: 563 AGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQI-RIFTKSSQKCNNRSLD---LNY 618
+GH++P KAL PGLVYD + E+YI+ LC+++Y + I I + S C+ + D LNY
Sbjct: 595 SGHVDPQKALSPGLVYDISTEEYIRFLCSLDYTVDHIVAIVKRPSVNCSKKFSDPGQLNY 654
Query: 619 PSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQK 678
PSF F ++VV+ + R VTN + Y + G + + V+P +L FK
Sbjct: 655 PSFSVLFGG------KRVVR-YTREVTNVGAASSVYKVTVNGAPSVGISVKPSKLSFKSV 707
Query: 679 YEKQSYKLTLEGPK--LLEKDVVYGSISWVDDDGRYEVRSPI 718
EK+ Y +T K + +GSI+W + ++EVRSP+
Sbjct: 708 GEKKRYTVTFVSKKGVSMTNKAEFGSITW--SNPQHEVRSPV 747
|
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| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 7.0e-128, Sum P(2) = 7.0e-128
Identities = 142/340 (41%), Positives = 193/340 (56%)
Query: 1 MDTSAMPKAYSSLYTWYLFMLCXXXXXXXXXXXXXXXXXXLVYTYANSIHGFSATLTVSE 60
+D A P + + + WY L +++TY HGFSA LT +
Sbjct: 32 VDHEAKPSIFPTHFHWYTSSLASLTSSPPS----------IIHTYDTVFHGFSARLTSQD 81
Query: 61 LETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSL--SGAWPASNYGKGVIIGLVDTGIW 118
L P IS P++ +HTT + EFLGL S +G S++G ++IG++DTG+W
Sbjct: 82 ASQLLDHPHVISVIPEQVRHLHTTRSPEFLGLRSTDKAGLLEESDFGSDLVIGVIDTGVW 141
Query: 119 PESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLK--VRM 176
PE SF D G+ VP +WKG+C++ F S CN+KL+GARFF G A N K+
Sbjct: 142 PERPSFDDRGLGPVPIKWKGQCIASQDFPESACNRKLVGARFFCGGYEATNGKMNETTEF 201
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDV 236
SPRD GHGTHT+SI+AG YV +S GYA G+A G+AP+A +A YK W G Y SD+
Sbjct: 202 RSPRDSDGHGTHTASISAGRYVFPASTLGYAHGVAAGMAPKARLAAYKVCWNSGCYDSDI 261
Query: 237 VAAIDQALQXXXXXXXXXXXXXXNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT 296
+AA D A+ +L DAIA+ F A+++G+ V ASAGN GP T
Sbjct: 262 LAAFDTAVADGVDVISLSVGGVVVPYYL--DAIAIGAFGAIDRGIFVSASAGNGGPGALT 319
Query: 297 LINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPG 336
+ N APW+ TVGAGTIDR+F ++ LGNG I+ S+Y G
Sbjct: 320 VTNVAPWMTTVGAGTIDRDFPANVKLGNGKMISGVSVYGG 359
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| UNIPROTKB|Q94H95 OSJNBb0048A17.11 "cDNA clone:J033123P12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
Identities = 287/701 (40%), Positives = 395/701 (56%)
Query: 41 LVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWP 100
++YTY +HG+SA LT +E E L+ PG + P+ +HTT T EFLGL +P
Sbjct: 70 VLYTYDTIVHGYSARLTRAEAEALESQPGVLLVNPEVRYELHTTRTPEFLGLDRTDALFP 129
Query: 101 ASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARF 160
SN G VI+G++DTG+WPE S+ D G+ VP WKG+C G FN+S CNKKLIGARF
Sbjct: 130 QSNTGSDVIVGVLDTGVWPERPSYDDAGLGPVPAGWKGKCEEGNDFNASACNKKLIGARF 189
Query: 161 FNKGL-IANNP-KLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRA 218
F G A P SPRD GHGTHTSS AAG+ V+G+ GYA G A+G+AP A
Sbjct: 190 FLTGYEAAKGPVDTSKESRSPRDNDGHGTHTSSTAAGSAVRGADLLGYAAGTAKGMAPHA 249
Query: 219 CVAMYKAIWRHGVYSSDVVAAIDQALQXXXXXXXXXXXXXXNGIFLEDDAIAVATFAAME 278
VA YK W G +SSD++ A++ A+ + D+IAV ++AME
Sbjct: 250 RVATYKVCWVGGCFSSDILKAMEVAVNDGVDVLSLSLGGGTADYYR--DSIAVGAYSAME 307
Query: 279 KGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNS 338
+G+ V SAGN GP TL NGAPW+ TVGAGT+DR+F + LGNG + SLY G
Sbjct: 308 RGIFVSCSAGNAGPGSATLSNGAPWITTVGAGTLDRDFPAHVVLGNGKNYSGVSLYSGKQ 367
Query: 339 SPS---------QVSLAFMDA-CDSVTEL-KKVINSIVVCREDSSISSQIDNAVA-AGVL 386
P+ S + M A C S + + +KV IV+C ++ Q V AG
Sbjct: 368 LPTTPVPFIYAGNASNSSMGALCMSGSLIPEKVAGKIVLCDRGTNARVQKGFVVKDAGGA 427
Query: 387 GAVFISNSALLEVYIRSS--FPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPA 444
G V + +A E + + P A + G T+ Y NPT S+ F T +G +P+
Sbjct: 428 GMVLANTAANGEELVADAHVLPGAGVGQKAGDTMRAYALSDPNPTASIVFAGTQVGIQPS 487
Query: 445 PMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSM 504
P+V ++SSRGP P I KPD++APG +LA+WS + + FN++SGTSM
Sbjct: 488 PVVAAFSSRGPNTVTPGILKPDLIAPGVNILAAWSGSVGPSGLAGDSRRVGFNIISGTSM 547
Query: 505 ATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAG 564
+ PHV+G+A LL+AAH DWSPAAIRSAL+TT+ + I D + PA+PLD+GAG
Sbjct: 548 SCPHVSGLAALLRAAHQDWSPAAIRSALMTTSYNGYPNGNGILDVATG-LPATPLDVGAG 606
Query: 565 HINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIRIFTK-SSQKCN-NRSLDLNYPSFI 622
H++P+KA+DPGLVYD A DY+ LCA++Y P QI TK ++ C+ NR+ + ++
Sbjct: 607 HVDPSKAVDPGLVYDIAAADYVDFLCAISYGPMQIAALTKHTTDACSGNRTYAVTALNYP 666
Query: 623 TFFNDYDSSSDEKVVKEFWRTVTNAEEVGT-AYTAKLT-GIDGLKVYVEPRRLVFKQKYE 680
+F + ++ ++ RTVTN + GT TA G + V VEP L F + E
Sbjct: 667 SFSVTFPATGG---TEKHTRTVTNVGQPGTYKVTASAAAGSTPVTVSVEPSTLTFTKSGE 723
Query: 681 KQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVRSPIVAT 721
KQSY ++ + +G + W D + V SPI T
Sbjct: 724 KQSYTVSFAAAAMPSGTNGFGRLVWSSD--HHVVSSPIAVT 762
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| TAIR|locus:2025457 SBTI1.1 "AT1G01900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
Identities = 277/700 (39%), Positives = 399/700 (57%)
Query: 43 YTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPAS 102
Y Y N++ GFSATLT +L+T+K G+IS+ PD L++HTT++ EFLGL G W +
Sbjct: 81 YIYENAMSGFSATLTDDQLDTVKNTKGFISAYPDELLSLHTTYSHEFLGLEFGIGLWNET 140
Query: 103 NYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFN 162
+ VIIGLVDTGI PE SF D M VP RW+G C G F+SS CNKK+IGA F
Sbjct: 141 SLSSDVIIGLVDTGISPEHVSFRDTHMTPVPSRWRGSCDEGTNFSSSECNKKIIGASAFY 200
Query: 163 KGLIANNPKLK--VRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACV 220
KG + K+ S RD GHGTHT+S AAG+ V ++YFG A G+A G+ + +
Sbjct: 201 KGYESIVGKINETTDFRSTRDAQGHGTHTASTAAGDIVPKANYFGQAKGLASGMRFTSRI 260
Query: 221 AMYKAIWRHGVYSSDVVAAIDQALQXXXXXXXXXXXXXXNGIFLEDDAIAVATFAAMEKG 280
A YKA W G S+DV+AAID+A+ ++ D IA+A F AM+K
Sbjct: 261 AAYKACWALGCASTDVIAAIDRAILDGVDVISLSLGGSSRPFYV--DPIAIAGFGAMQKN 318
Query: 281 VLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSP 340
+ V SAGN GP+ T+ NGAPWL+TV A DR F + +GN + SLY G S
Sbjct: 319 IFVSCSAGNSGPTASTVSNGAPWLMTVAASYTDRTFPAIVRIGNRKSLVGSSLYKGKSLK 378
Query: 341 SQVSLAFMDACDSVT--------ELKK--VINSIVVC-REDSSISSQIDNAVAAGVLGAV 389
+ + LAF + LK+ V IV+C R S +++ + +G +
Sbjct: 379 N-LPLAFNRTAGEESGAVFCIRDSLKRELVEGKIVICLRGASGRTAKGEEVKRSGGAAML 437
Query: 390 FISNSALLEVYIRSS--FPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMV 447
+S A E + PA + +DG+T+++Y+ N T S++FR T G APMV
Sbjct: 438 LVSTEAEGEELLADPHVLPAVSLGFSDGKTLLNYLAGAANATASVRFRGTAYGAT-APMV 496
Query: 448 DSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATP 507
++SSRGP ++ P I KPDI APG +LA WSP SS + ++S FN++SGTSMA P
Sbjct: 497 AAFSSRGPSVAGPEIAKPDIAAPGLNILAGWSPFSSPSLLRSDPRRVQFNIISGTSMACP 556
Query: 508 HVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKD--ASNNNFPASPLDMGAGH 565
H++G+A L+K+ H DWSPA I+SA++TTA DN I D A+ A+ GAG+
Sbjct: 557 HISGIAALIKSVHGDWSPAMIKSAIMTTARITDNRNRPIGDRGAAGAESAATAFAFGAGN 616
Query: 566 INPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIRIFTKSSQKCNNRSLDLNYP---SFI 622
++P +A+DPGLVYD + DY+ LC++NY E+I +F+ ++ C + ++ L+ P ++
Sbjct: 617 VDPTRAVDPGLVYDTSTVDYLNYLCSLNYTSERILLFSGTNYTCASNAVVLS-PGDLNYP 675
Query: 623 TFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQ 682
+F + + ++ K V+ + RTVTN Y + G+KV VEP+ L F++ E+
Sbjct: 676 SFAVNLVNGANLKTVR-YKRTVTNVGSPTCEYMVHVEEPKGVKVRVEPKVLKFQKARERL 734
Query: 683 SYKLTLEGPKLLEKDVV-YGSISWVDDDGRYEVRSPIVAT 721
SY +T + +G + W+ D +Y VRSPI T
Sbjct: 735 SYTVTYDAEASRNSSSSSFGVLVWICD--KYNVRSPIAVT 772
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| UNIPROTKB|Q8LSS2 OSJNBa0011L09.20 "Subtilisin N-terminal Region family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 5.1e-121, Sum P(2) = 5.1e-121
Identities = 140/334 (41%), Positives = 185/334 (55%)
Query: 41 LVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWP 100
L+Y+Y+ + HGF+A L L L+ PG + PD +HTT T EFLGL LS A+
Sbjct: 65 LLYSYSAAAHGFAAALLPHHLPLLRASPGVLQVVPDEVFDLHTTRTPEFLGL--LSPAYQ 122
Query: 101 ASNYG-----KGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKL 155
+ +G V+IG++DTG+WPES SF+ + P RWKG C +GV F+ S+C +KL
Sbjct: 123 PAIHGFEAATHDVVIGVLDTGVWPESPSFAGGDLPPPPARWKGVCEAGVDFSPSVCGRKL 182
Query: 156 IGARFFNKGLIANN------PKLKVRMN---SPRDGSGHGTHTSSIAAGNYVKGSSYFGY 206
+GAR F++GL A N + V S RD GHGTHT++ AAG V +S GY
Sbjct: 183 VGARSFSRGLRAANGGGGGGARGGVGRKGFVSARDRDGHGTHTATTAAGAVVANASLLGY 242
Query: 207 ATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQXXXXXXXXXXXXXXNGIFLED 266
ATG ARG+AP A VA YK W G SD++A ID A+ F
Sbjct: 243 ATGTARGMAPGARVAAYKVCWPEGCLGSDILAGIDAAVADGVGVLSLSLGGGSAPYFR-- 300
Query: 267 DAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGV 326
D +AV F A GV V SAGN GPS T+ N APW+ TVGAGT+DR+F +TL G
Sbjct: 301 DTVAVGAFGAAAAGVFVACSAGNSGPSGATVANSAPWVATVGAGTLDRDFPAYVTLPTGA 360
Query: 327 QINFKSLYPGNSS---PSQVSLAFMDACDSVTEL 357
++ SLY G S P+ + L + D+ + L
Sbjct: 361 RLAGVSLYAGPSPSPRPAMLPLVYGGGGDNASRL 394
|
|
| TAIR|locus:2087512 AT3G14067 "AT3G14067" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
Identities = 264/667 (39%), Positives = 372/667 (55%)
Query: 41 LVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWP 100
L+Y+Y+ ++HGFSA L+ + L++ P IS PD+ +HTTHT FLG S SG W
Sbjct: 69 LLYSYSRAVHGFSARLSPIQTAALRRHPSVISVIPDQAREIHTTHTPAFLGFSQNSGLWS 128
Query: 101 ASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARF 160
SNYG+ VI+G++DTGIWPE SFSD G+ +P WKGEC G F +S CN+KLIGAR
Sbjct: 129 NSNYGEDVIVGVLDTGIWPEHPSFSDSGLGPIPSTWKGECEIGPDFPASSCNRKLIGARA 188
Query: 161 FNKGLIA--NNPKLKV--RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAP 216
F +G + N K SPRD GHGTHT+S AAG+ V +S + YA G A G+A
Sbjct: 189 FYRGYLTQRNGTKKHAAKESRSPRDTEGHGTHTASTAAGSVVANASLYQYARGTATGMAS 248
Query: 217 RACVAMYKAIWRHGVYSSDVVAAIDQALQXXXXXXXXXXXXXXNGIFLEDDAIAVATFAA 276
+A +A YK W G Y SD++AA+DQA+ + D+IA+ F A
Sbjct: 249 KARIAAYKICWTGGCYDSDILAAMDQAVADGVHVISLSVGASGSAPEYHTDSIAIGAFGA 308
Query: 277 MEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPG 336
G++V SAGN GP+ T N APW+LTVGA T+DREF + G+G SLY G
Sbjct: 309 TRHGIVVSCSAGNSGPNPETATNIAPWILTVGASTVDREFAANAITGDGKVFTGTSLYAG 368
Query: 337 NSSP-SQVSLAFMDACDSVTELKKVINS------IVVCREDSSISSQIDNAVA-AGVLGA 388
S P SQ+SL + C S +NS IV+C + + +AV AG G
Sbjct: 369 ESLPDSQLSLVYSGDCGSRLCYPGKLNSSLVEGKIVLCDRGGNARVEKGSAVKLAGGAGM 428
Query: 389 VFISNSALLEVYIRSSF--PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIG-TKPAP 445
+ + + E S PA + G I DYIK D+PT + F T+IG + P+P
Sbjct: 429 ILANTAESGEELTADSHLVPATMVGAKAGDQIRDYIKTSDSPTAKISFLGTLIGPSPPSP 488
Query: 446 MVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMA 505
V ++SSRGP P I KPD++APG +LA W+ + ++ FN++SGTSM+
Sbjct: 489 RVAAFSSRGPNHLTPVILKPDVIAPGVNILAGWTGMVGPTDLDIDPRRVQFNIISGTSMS 548
Query: 506 TPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGH 565
PHV+G+A LL+ AHPDWSPAAI+SALVTTA ++N+ I+D + S + GAGH
Sbjct: 549 CPHVSGLAALLRKAHPDWSPAAIKSALVTTAYDVENSGEPIEDLATGKSSNSFIH-GAGH 607
Query: 566 INPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIRIFTKSSQKCNN-RSLDLNYPSFITF 624
++PNKAL+PGLVYD ++Y+ LCA+ Y+ I +F + + + L + +
Sbjct: 608 VDPNKALNPGLVYDIEVKEYVAFLCAVGYEFPGILVFLQDPTLYDACETSKLRTAGDLNY 667
Query: 625 FN-DYDSSSDEKVVKEFWRTVTNA-EEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQ 682
+ +S +VVK + R V N V Y + +++ V P +L F ++
Sbjct: 668 PSFSVVFASTGEVVK-YKRVVKNVGSNVDAVYEVGVKSPANVEIDVSPSKLAFSKEKSVL 726
Query: 683 SYKLTLE 689
Y++T +
Sbjct: 727 EYEVTFK 733
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 728 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-102 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 4e-30 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 6e-28 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 9e-24 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 4e-21 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-20 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 3e-17 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 4e-17 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 5e-16 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 1e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 5e-15 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 6e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 7e-15 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-14 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-14 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-13 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 3e-13 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 3e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 1e-12 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 9e-12 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 1e-11 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-11 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 3e-11 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 3e-11 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 3e-11 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 4e-10 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 5e-10 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 8e-10 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 2e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 3e-09 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 4e-09 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 3e-08 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 5e-08 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 7e-08 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 9e-08 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-07 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 1e-07 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-07 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 2e-07 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 2e-07 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 2e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 4e-07 | |
| TIGR03895 | 602 | TIGR03895, protease_PatA, cyanobactin maturation p | 4e-07 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 5e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 6e-07 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 7e-07 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-06 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 2e-06 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 3e-06 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 6e-06 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 6e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 1e-05 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 1e-05 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 2e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-05 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 4e-05 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 5e-05 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 5e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-04 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 3e-04 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 3e-04 | |
| TIGR03895 | 602 | TIGR03895, protease_PatA, cyanobactin maturation p | 7e-04 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 7e-04 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 8e-04 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 9e-04 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 0.001 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 315 bits (810), Expect = e-102
Identities = 115/236 (48%), Positives = 148/236 (62%), Gaps = 6/236 (2%)
Query: 81 VHTTHTSEFLGLSSLSG--AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKG 138
+HTT + +FLGL G A+N G+G+IIG++DTGIWPE SF+D G P W G
Sbjct: 3 LHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPG 62
Query: 139 ECMSGVQFNSSLCNKKLIGARFFNKGLIANNPK-LKVRMNSPRDGSGHGTHTSSIAAGNY 197
+C++G FN CN KLIGAR+F+ G A SPRD GHGTHT+S AAGN
Sbjct: 63 DCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNV 122
Query: 198 VKGSSYFGYATGIARGIAPRACVAMYKAIWR-HGVYSSDVVAAIDQALQDGVDVLSLSLG 256
V +S G+A G A G+APRA +A+YK W G + SD++AAIDQA+ DGVDV+S S+G
Sbjct: 123 VVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIG 182
Query: 257 LSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTI 312
+D IA+A A+E G+ V ASAGN GP T+ N APW+ TV A T+
Sbjct: 183 GG--SPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 4e-30
Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 464 KPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDW 523
KPDI APG +LA+W+P + G +F +SGTSMA+PHVAGVA LLK+AHPDW
Sbjct: 237 KPDIAAPGVDILAAWTPEGADPGDARG---EDFAFISGTSMASPHVAGVAALLKSAHPDW 293
Query: 524 SPAAIRSALVTTAS 537
SPAAI+SAL+TTA
Sbjct: 294 SPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 6e-28
Identities = 75/221 (33%), Positives = 108/221 (48%), Gaps = 39/221 (17%)
Query: 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFF--- 161
GKGV + ++DTGI G N K+ G F
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDD 39
Query: 162 -NKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACV 220
+ + S D +GHGTH + I AGN G G +G+AP+A +
Sbjct: 40 DYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPKADL 91
Query: 221 AMYKAIWRHGVYSSDVV-AAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEK 279
YK + G ++DV+ AAI+QA+ DG+DV++LSLG S+NG DD A+A A++
Sbjct: 92 YAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG---PDDPDAIAINNAVKA 148
Query: 280 GVLVVASAGNDGPSYWTLIN--GAPWLLTVGAGTIDREFEG 318
GV+VVA+AGN GP+ +T+ + AP +TVGA T+ E
Sbjct: 149 GVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADVAEA 189
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 9e-24
Identities = 55/135 (40%), Positives = 71/135 (52%), Gaps = 21/135 (15%)
Query: 437 TVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNF 496
TV A V SSRGP S + KPDI+APG ++++ SG Y+
Sbjct: 182 TVADVAEADTVGPSSSRGPPTS-DSAIKPDIVAPGVDIMSTAP--------GSGTGYAR- 231
Query: 497 NLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPA 556
MSGTSMA PHVAG A LLK AHPDWSPA I++AL+ TA PL ++ +
Sbjct: 232 --MSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDS---------DGVVY 280
Query: 557 SPLDMGAGHINPNKA 571
GAG ++ +A
Sbjct: 281 PVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 4e-21
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 52/213 (24%)
Query: 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKG 164
GKG+ + ++DTGI F + + A F N
Sbjct: 1 GKGITVAVLDTGIDAPHPDFD--------------------------GRIIRFADFVNTV 34
Query: 165 LIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYK 224
+P D +GHGTH + I AG+ + + +G+AP A + K
Sbjct: 35 ---------NGRTTPYDDNGHGTHVAGIIAGSGRASNGKY-------KGVAPGANLVGVK 78
Query: 225 AIWRHGV-YSSDVVAAIDQALQD----GVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEK 279
+ G SD++A ID +++ + V++LSLG + +D + A +
Sbjct: 79 VLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLG-APPDPSYGEDPLCQAVERLWDA 137
Query: 280 GVLVVASAGNDGPSYWTLIN---GAPWLLTVGA 309
G++VV +AGN GP T I +P ++TVGA
Sbjct: 138 GIVVVVAAGNSGPGPGT-ITSPGNSPKVITVGA 169
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 3e-20
Identities = 63/212 (29%), Positives = 85/212 (40%), Gaps = 50/212 (23%)
Query: 108 VIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIA 167
V + ++DTG+ P+ + L G +
Sbjct: 1 VTVAVIDTGVDPD--------------------------HPDLDGLFGGGDGGNDDDDNE 34
Query: 168 NNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIW 227
N P P DG+GHGTH + I A + G G+AP A + K +
Sbjct: 35 NGP------TDPDDGNGHGTHVAGIIAASAN---------NGGGVGVAPGAKLIPVKVLD 79
Query: 228 RHGV-YSSDVVAAIDQAL-QDGVDVLSLSLGLSLNGIF-LEDDAIAVATFAAMEKGVLVV 284
G SSD+ AAID A G DV++LSLG + +AI A GVLVV
Sbjct: 80 GDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALAK---LGVLVV 136
Query: 285 ASAGNDGPSYWTLIN---GAPWLLTVGAGTID 313
A+AGNDGP T I +P ++ VGA D
Sbjct: 137 AAAGNDGPDGGTNIGYPAASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 3e-17
Identities = 51/131 (38%), Positives = 65/131 (49%), Gaps = 23/131 (17%)
Query: 447 VDSY-SSRGP--FLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTS 503
VDSY SS GP L KPD+ APG +L+++ P++ + ++SGTS
Sbjct: 187 VDSYFSSWGPTNELY----LKPDVAAPGGNILSTY-PLAG----------GGYAVLSGTS 231
Query: 504 MATPHVAGVAGLLKAA-HPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMG 562
MATP+VAG A LL A H SPA +R L +TA P L S A G
Sbjct: 232 MATPYVAGAAALLIQARHGKLSPAELRDLLASTAKP----LPWSDGTSALPDLAPVAQQG 287
Query: 563 AGHINPNKALD 573
AG +N KAL
Sbjct: 288 AGLVNAYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 447 VDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMAT 506
+ +SSRGP KPD++APG +++ SP + + MSGTSMAT
Sbjct: 180 ISYFSSRGPTGDG--RIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFE----MSGTSMAT 233
Query: 507 PHVAGVAGLLKAAHPDWSPAAIRSALVTTA 536
PHV+G LL A+P +P ++ L TA
Sbjct: 234 PHVSGAIALLLQANPILTPDEVKCILRDTA 263
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 26/125 (20%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
+S+ G + KPDI+APG +L+S G L ++ SGTSMA P
Sbjct: 179 DFSNYG---GPVDGIKPDIVAPGGNILSSGP---------GGDLGG-YDSHSGTSMAAPL 225
Query: 509 VAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINP 568
VAG A LL +A+P +P +R+ LVTTA+ L + + +F G G +N
Sbjct: 226 VAGAAALLLSANPSLTPETLRALLVTTATDLGSM------GLDRSF-------GYGLLNL 272
Query: 569 NKALD 573
KA+
Sbjct: 273 GKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 57/197 (28%), Positives = 81/197 (41%), Gaps = 29/197 (14%)
Query: 105 GKGVIIGLVDTGIWPESQSF--SDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFN 162
G+G+++ ++D+G+ P +F D+ AK S G +
Sbjct: 10 GEGMVVAVIDSGVDPTHDAFRLDDDSKAK---------YSEEFEAKKKKAGIGYGKYYNE 60
Query: 163 KGLIA-----NNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
K A NN + DGS HG H + I AGN G +G+AP
Sbjct: 61 KVPFAYNYADNNDDILDED----DGSSHGMHVAGIVAGN---GDE--EDNGEGIKGVAPE 111
Query: 218 ACVAMYK---AIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATF 274
A + K Y AI+ A++ G DV+++SLG S G DD A
Sbjct: 112 AQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLG-STAGFVDLDDPEQQAIK 170
Query: 275 AAMEKGVLVVASAGNDG 291
A E GV+VV +AGNDG
Sbjct: 171 RAREAGVVVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 5e-15
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV-YSSD 235
N +DG+GHGTH + I A G+ G+AP A + K + G SD
Sbjct: 34 NDYQDGNGHGTHVAGIIAA--------LDNGVGVV-GVAPEADLYAVKVLNDDGSGTYSD 84
Query: 236 VVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW 295
++A I+ A+++G+D++++SLG + L +AI A G+LVVA+AGN G
Sbjct: 85 IIAGIEWAIENGMDIINMSLGGPSDSPALR-EAIK----KAYAAGILVVAAAGNSGNGDS 139
Query: 296 TLINGA--PWLLTVGA 309
+ A P ++ VGA
Sbjct: 140 SYDYPAKYPSVIAVGA 155
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 6e-15
Identities = 58/189 (30%), Positives = 81/189 (42%), Gaps = 35/189 (18%)
Query: 104 YGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNK 163
GKGV + +VDTGI + G C G K G F
Sbjct: 11 TGKGVKVAVVDTGIDYTHPAL-------------GGCF-GPGC------KVAGGYDFVGD 50
Query: 164 GLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMY 223
NP V + P D GHGTH + I A N + +G+ G+AP A + Y
Sbjct: 51 DYDGTNPP--VPDDDPMDCQGHGTHVAGIIAAN----PNAYGFT-----GVAPEATLGAY 99
Query: 224 KAIWRHGVYSSDV-VAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVL 282
+ G + D +AA +A +DG DV++ SLG +G +D AV ++ GV+
Sbjct: 100 RVFGCSGSTTEDTIIAAFLRAYEDGADVITASLG-GPSG--WSEDPWAVVASRIVDAGVV 156
Query: 283 VVASAGNDG 291
V +AGNDG
Sbjct: 157 VTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 7e-15
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 21/87 (24%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
S+SS GP + ++ APG +L+++ +++ +SGTSMATPH
Sbjct: 164 SFSSTGPEV--------ELAAPGVDILSTY-------------PNNDYAYLSGTSMATPH 202
Query: 509 VAGVAGLLKAAHPDWSPAAIRSALVTT 535
VAGVA L+ + P+ + A +R AL T
Sbjct: 203 VAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 2e-14
Identities = 34/77 (44%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 460 PNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAA 519
KPD+ APG V ++ + + +SGTSMA PHVAGVA LL AA
Sbjct: 186 DEYTKPDVAAPGVDVYSARQGANGDGQYTR---------LSGTSMAAPHVAGVAALLAAA 236
Query: 520 HPDWSPAAIRSALVTTA 536
HPD SP I+ AL TA
Sbjct: 237 HPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
S+S+ G ++ D+ APG +L S ++ MSGTSMATPH
Sbjct: 191 SFSNYGKWV--------DVSAPGGGIL-------------STTPDGDYAYMSGTSMATPH 229
Query: 509 VAGVAGLLKAAHPDWSPAAIRSALVTTASPL 539
VAGVA LL + P S + +R AL TA +
Sbjct: 230 VAGVAALLYSQGP-LSASEVRDALKKTADDI 259
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-13
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 447 VDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMAT 506
VD + S DI APG +L+S + +SGTSMA
Sbjct: 165 VDRDGTPASPSSNGG-AGVDIAAPGGDILSS-----------PTTGGGGYATLSGTSMAA 212
Query: 507 PHVAGVAGLLKAAHPDWSPAAIRSALVTT 535
P VAGVA LL +A+PD +PA +++AL++T
Sbjct: 213 PIVAGVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 3e-13
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 466 DILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSP 525
DI APG +L++W I S + +SGTSMA PHVAG+A L + PD SP
Sbjct: 194 DIFAPGVDILSAW--IGS---------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 526 AAIRSALVTTASP 538
A +++ L+ A+
Sbjct: 243 AEVKARLLNLATK 255
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 43/120 (35%), Positives = 55/120 (45%), Gaps = 23/120 (19%)
Query: 181 DGSGHGTHTS-SIAA-GNYVKGSSYFGYATGIARGIAPRACVAMYKAI-WRHGVYSSDVV 237
D GHGT + IAA GN +G+AP + Y+ SS ++
Sbjct: 51 DKLGHGTAVAGQIAANGNI--------------KGVAPGIGIVSYRVFGSCGSAESSWII 96
Query: 238 AAIDQALQDGVDVLSLSLGLSLNGIFLEDD------AIAVATFAAMEKGVLVVASAGNDG 291
AI A DGVDV++LSLG L +D A A A KG +VVA+AGNDG
Sbjct: 97 KAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 466 DILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSP 525
D+ APG +L S + MSGTSMATPHVAG A LL + +P+ +
Sbjct: 201 DLAAPGVDIL-------------STSPGGGYGYMSGTSMATPHVAGAAALLLSLNPNLTA 247
Query: 526 AAIRSALVTTA 536
A I+ A++++A
Sbjct: 248 AQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 31/145 (21%)
Query: 177 NSPRDGSGHGTHTSSI--AAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV-YS 233
N P D +GHGTH + I A GN GIA G+A + K + G +
Sbjct: 57 NDPMDDNGHGTHVAGIIGAVGNN---------GIGIA-GVAWNVKIMPLKFLGADGSGTT 106
Query: 234 SDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDG-- 291
SD + AID A+ G +++ S G L D AIA A++ G+L VA+AGNDG
Sbjct: 107 SDAIKAIDYAVDMGAKIINNSWGGGGPSQALRD-AIA----RAIDAGILFVAAAGNDGTN 161
Query: 292 -------PSYWTLINGAPWLLTVGA 309
P+ + L +++V A
Sbjct: 162 NDKTPTYPASYDL----DNIISVAA 182
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-11
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 319 SLTLGNGVQINFKSLYPGN-------SSPSQVSLAFMDACDSVTEL-KKVINSIVVC--R 368
+TLGNG I +SLYPGN + C + KV IV+C
Sbjct: 1 VVTLGNGKTIVGQSLYPGNLKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRG 60
Query: 369 EDSSISSQIDNAVAAGVLGAVFISNSA--LLEVYIRSSFPAAFINVNDGQTIIDYIKKCD 426
++S ++ D AAG G + ++ L V PA ++ DG I+ YI
Sbjct: 61 GNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTS 120
Query: 427 NPTGSL 432
NPT ++
Sbjct: 121 NPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYS-SD 235
+ D +GHGTH + I A G TG+A G+AP+A + K + +G S +D
Sbjct: 62 SDAMDDNGHGTHVAGIIAAATNNG-------TGVA-GVAPKAKIMPVKVLDANGSGSLAD 113
Query: 236 VVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW 295
+ I A G V++LSLG L A+ A A KGV+VVA+AGN+G S
Sbjct: 114 IANGIRYAADKGAKVINLSLGGGL-----GSTALQEAINYAWNKGVVVVAAAGNEGVSSV 168
Query: 296 TLINGAPWLLTVGAGTIDRE 315
+ P + V A D +
Sbjct: 169 SYPAAYPGAIAVAATDQDDK 188
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 450 YSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHV 509
+SSRGP KPDI APG + ++ G Y SGTSMA PHV
Sbjct: 190 FSSRGPSTY--GRIKPDISAPGVNIRSAVP----------GGGYG---SSSGTSMAAPHV 234
Query: 510 AGVAGLLKAAHPDWSPA--AIRSALVTTA 536
AGVA LL +A+P A + L TA
Sbjct: 235 AGVAALLWSANPSLIGDVDATEAILTETA 263
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 46/151 (30%), Positives = 64/151 (42%), Gaps = 42/151 (27%)
Query: 437 TVIGTKPAPMVDSYSSRGPFLSCPNIP-KPDILAPGSLVLASWSPISSVAEVQSGLLYSN 495
+ + +SS GP P++ KPDI APG G +YS
Sbjct: 224 KKVPNPNGGQMSGFSSWGP---TPDLDLKPDITAPG------------------GNIYST 262
Query: 496 FN-----LMSGTSMATPHVAGVAGL----LKAAHPDWSPA----AIRSALVTTASPLDNT 542
N MSGTSMA+PHVAG + L LK +P S +++ L+ TA+P
Sbjct: 263 VNDNTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATP---- 318
Query: 543 LSHIKDASNNNFPASPLDMGAGHINPNKALD 573
D+ + SP GAG I+ KA+
Sbjct: 319 ---PLDSEDTKTYYSPRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 43/199 (21%), Positives = 63/199 (31%), Gaps = 55/199 (27%)
Query: 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKG 164
G GV +G++D+GI F+ + N
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAGR------------------------VSEASYYVAVNDA 37
Query: 165 LIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYK 224
A+N DG HGTH + + A G G+AP A + +
Sbjct: 38 GYASNG----------DGDSHGTHVAGVIAAARDGG---------GMHGVAPDATLYSAR 78
Query: 225 AIWRHGVY--SSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIA----------VA 272
A G +D+ AA D GV +++ S G + + A
Sbjct: 79 ASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAA 138
Query: 273 TFAAMEKGVLVVASAGNDG 291
A G L V +AGNDG
Sbjct: 139 LARAANAGGLFVFAAGNDG 157
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 425 CDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWS-PISS 483
+NP+ S + SSRGP KPD++APG+ +L++ S
Sbjct: 180 SNNPSVSNGEGGLGQSDNSDTVASF-SSRGPTY--DGRIKPDLVAPGTGILSARSGGGGI 236
Query: 484 VAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLL----------KAAHPDWSPAAIRSALV 533
S SGTSMATP VAG A LL +P S A +++ L+
Sbjct: 237 GDTSDSAYTS-----KSGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLI 289
Query: 534 TTA 536
+A
Sbjct: 290 NSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPG----SLVLASWSPISSVAEVQSGLLYSNFNLMSGTSM 504
SYS+ GP + D+ APG S V P S+ + S + + GTSM
Sbjct: 205 SYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTG--TTSPGGSTYGFLQGTSM 254
Query: 505 ATPHVAGVAGLLKAAHPDWSPAAIRSALVTT 535
A PHVAGVA L+K+ +P +PA I S L +T
Sbjct: 255 AAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 15/136 (11%)
Query: 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAI 240
D +GHGTH + I A GS G+AP A + K + G S++ AI
Sbjct: 43 DNNGHGTHVAGIIAAGDNNGSG--------GVGVAPNAKLESVKVLPGSGGTDSELAGAI 94
Query: 241 DQAL--QDGVDVLSLSLGLSLNGIFLEDDAIAVATF-AAMEKGVLVVASAGNDGPSYWTL 297
+ A + + V+++SLG AI A KG L V +AGN G
Sbjct: 95 EWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYADNN 154
Query: 298 INGAPWL----LTVGA 309
P +TVGA
Sbjct: 155 PVSDPASANNIITVGA 170
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 8e-10
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDV 236
D GHGTH S G G A G+ G+AP A + K + G S +
Sbjct: 37 TEVFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVLDDGGGSLSQI 87
Query: 237 VAAIDQALQDGVDVLSLSLGLSLNGI-FLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW 295
+A ++ A++ DV+S+SLG + LE+ AV + + G L V SAGN+G
Sbjct: 88 IAGMEWAVEKDADVVSMSLGGTYYSEDPLEE---AVEALSN-QTGALFVVSAGNEGHGTS 143
Query: 296 TLINGAPWLLTVGA 309
A L+VGA
Sbjct: 144 GSPGSAYAALSVGA 157
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 51/227 (22%), Positives = 73/227 (32%), Gaps = 82/227 (36%)
Query: 102 SNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFF 161
S+ G GV + ++DTGI F G A GA F
Sbjct: 21 SSTGSGVDVYVLDTGIRTTHVEF--GGRAIW------------------------GADFV 54
Query: 162 NKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVA 221
D +GHGTH + G G+A +A +
Sbjct: 55 GGD-------------PDSDCNGHGTHVAGTVGGKTY--------------GVAKKANL- 86
Query: 222 MYKAIWRHGV---------YSSDVVAAIDQALQDGVD-----VLSLSLGLSLNGIFLEDD 267
V S ++A ++ D V ++SLG + D
Sbjct: 87 -------VAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGASTAL--DA 137
Query: 268 AIAVATFAAMEKGVLVVASAGNDG-PSYWTLINGAPWLLTVGAGTID 313
A+A AA+ GV+VV +AGN + AP +TVGA D
Sbjct: 138 AVA----AAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD 180
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 31/136 (22%)
Query: 178 SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVV 237
+DG GHGTH + G V G Y G+ARG + K + G ++
Sbjct: 41 DVQDGHGHGTHCAGTIFGRDVPGPRY-----GVARGAE---IALIGKVLGDGGGGDGGIL 92
Query: 238 AAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAME------------------- 278
A I A+ +G DV+S+SLG G+ + +A A+E
Sbjct: 93 AGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQ 152
Query: 279 ----KGVLVVASAGND 290
+G L+VA+AGN+
Sbjct: 153 AALARGTLIVAAAGNE 168
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 183 SGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIW---RHGVYSSDVVAA 239
S HGTH +S+ G SS GIAP C + I+ R G D+ A
Sbjct: 50 SAHGTHVASLIFGQ--PCSS--------VEGIAP-LCRGLNIPIFAEDRRGCSQLDLARA 98
Query: 240 IDQALQDGVDVLSLSLG-LSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLI 298
I+ AL+ G ++++S G L+ G A AVA + VL+VA+AGN+G + +
Sbjct: 99 INLALEQGAHIINISGGRLTQTGEADPILANAVAM--CQQNNVLIVAAAGNEGCACLHVP 156
Query: 299 NGAPWLLTVGA 309
P +L VGA
Sbjct: 157 AALPSVLAVGA 167
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 447 VDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMAT 506
+ +S RGP KPDI APG +L + SP + SGTS+A
Sbjct: 359 IAIFSGRGPTRD--GRIKPDIAAPGVNILTA-SPGGG------------YTTRSGTSVAA 403
Query: 507 PHVAGVAGLL 516
VAG LL
Sbjct: 404 AIVAGACALL 413
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 20/100 (20%)
Query: 437 TVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNF 496
V S+S GP+ D+ APG + S SP SG
Sbjct: 180 AVGSIDRDGTPSSFSLPGPW--------VDLAAPGE-NIVSLSPGGDGLATTSG------ 224
Query: 497 NLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTA 536
TS A P V+G A L+++ PD + A +R + TA
Sbjct: 225 -----TSFAAPFVSGTAALVRSRFPDLTAAQVRRRIEATA 259
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 467 ILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPA 526
+ APG + ++ + + +SGTS A PHV+G A LL P +
Sbjct: 208 LAAPGENIYSTD-----------PDGGNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 527 AIRSALVTTA 536
+R L+TTA
Sbjct: 257 QVRQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-08
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 26 ESSKATATSSTISSKLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPL 79
+S A++ + ++Y+Y + +GF+A LT E E L+K P PD+ +
Sbjct: 20 KSWHASSKEEAAGASILYSYKHGFNGFAAKLTEEEAEKLRKHPDVEYVEPDQVV 73
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 45/213 (21%)
Query: 104 YGKGVIIGLVDTGIWPESQSFSDE-GMAKVPPRW----KGECMSGVQFNSSLCNKKLIGA 158
GKGV++G++DTGI F +E G ++ W G G + +++I
Sbjct: 2 TGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEII-- 59
Query: 159 RFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRA 218
N L ++NP V RD +GHGTH + IAAGN + +G+AP A
Sbjct: 60 ---NAALASDNPYDIV---PSRDENGHGTHVAGIAAGNGDNNPDF--------KGVAPEA 105
Query: 219 CVAM-----YKAIWRHG-----VY-SSDVVAAI----DQALQDGVD-VLSLSLGLSL--- 259
+ + K R Y +D++ AI D+AL+ V+++SLG +
Sbjct: 106 ELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFGSH 165
Query: 260 NGIFLEDDAI-AVATFAAMEKGVLVVASAGNDG 291
+G L + I A++ G+ VV AGN+G
Sbjct: 166 DGTSLLERYIDAISRLR----GIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 448 DSYSSRGPFLSCPNIP-KPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMAT 506
D R P P + KPD+ AP + +V G NF GTS A
Sbjct: 176 DPVGIRLPT---PEVRQKPDVTAPDGVN-------GTVDGDGDGP--PNF---FGTSAAA 220
Query: 507 PHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDN 541
PH AGVA L+ +A+P +PA IR AL +TA +
Sbjct: 221 PHAAGVAALVLSANPGLTPADIRDALRSTALDMGE 255
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 51/212 (24%), Positives = 72/212 (33%), Gaps = 45/212 (21%)
Query: 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKG 164
GKG I+G+ DTG+ F D K ++K++ +
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYDPNFNKTNLF----------------HRKIVRYDSLSDT 49
Query: 165 LIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMY- 223
D GHGTH + I AG SS Y +G+AP+A +
Sbjct: 50 --------------KDDVDGHGTHVAGIIAGKGNDSSSISLY-----KGVAPKAKLYFQD 90
Query: 224 ---KAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKG 280
+ + + G + S S G +N + A A FA
Sbjct: 91 IGDTSGNLSSPPDLNKL--FSPMYDAGARISSNSWGSPVNNGY-TLLARAYDQFAYNNPD 147
Query: 281 VLVVASAGNDGPSYWTLINGAPW---LLTVGA 309
+L V SAGNDG I +LTVGA
Sbjct: 148 ILFVFSAGNDGNDGSNTIGSPATAKNVLTVGA 179
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 17/102 (16%)
Query: 442 KPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSG 501
K ++SSRGP + G+L ++ +P ++A V + L + LM+G
Sbjct: 324 KLPGNQYTWSSRGP---TAD---------GALGVSISAPGGAIASVPNWTLQGS-QLMNG 370
Query: 502 TSMATPHVAGVAGL----LKAAHPDWSPAAIRSALVTTASPL 539
TSM++P+ G L LKA ++P ++R AL TA L
Sbjct: 371 TSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
S+SS GP + KPD++A G+ + N +GTS + P
Sbjct: 188 SFSSIGP--TADGRLKPDVMALGTGIYVINGD-------------GNITYANGTSFSCPL 232
Query: 509 VAGVAGLLKAAHPDWSPAAIRSALVTTAS 537
+AG+ L AHP+W+ I+ A++ +AS
Sbjct: 233 IAGLIACLWQAHPNWTNLQIKEAILKSAS 261
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 55/191 (28%), Positives = 74/191 (38%), Gaps = 44/191 (23%)
Query: 146 FNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFG 205
F N +++G F +NN HGT S AG
Sbjct: 20 FKHLFKNLRILGEYDFVDN--SNNTNYT--------DDDHGTAVLSTMAG---------- 59
Query: 206 YATGIARGIAPRACVAMYKAIWRHGVYSSDV-----VAAIDQALQDGVDVLSLSLGLSLN 260
Y G+ G AP A + Y A + V VAA + A GVD++S SLG +
Sbjct: 60 YTPGVMVGTAPNA--SYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTF 117
Query: 261 GIFLE-------DDAIAVATFA---AMEKGVLVVASAGNDGPSYWTLINGAP----WLLT 306
D + + A A KG+LVV SAGN+G + W I GAP +L+
Sbjct: 118 DNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGI-GAPADAENVLS 176
Query: 307 VGAGTIDREFE 317
VGA +D
Sbjct: 177 VGA--VDANGN 185
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 22/125 (17%)
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDV 236
+ S HGTH + A G G+A G+A A + + + + G SD+
Sbjct: 65 SGVSPSSWHGTHVAGTIAAVTNNGV-------GVA-GVAWGARILPVRVLGKCGGTLSDI 116
Query: 237 VAAIDQAL---QDGV-------DVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVAS 286
V + A GV V++LSLG G + A +GVLVV +
Sbjct: 117 VDGMRWAAGLPVPGVPVNPNPAKVINLSLG----GDGACSATMQNAINDVRARGVLVVVA 172
Query: 287 AGNDG 291
AGN+G
Sbjct: 173 AGNEG 177
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease, PatA/PatG family | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSS---DVVAAID 241
HGTH +SI G GIAP+ C + I+ G D+ AI+
Sbjct: 1 HGTHVASIIFGQPGSPVP----------GIAPK-CRGLIIPIFFDGARRISQLDLARAIE 49
Query: 242 QALQDGVDVLSLSLG-LSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLING 300
A+ G +++++S G L+ G + + A E +L+VA+AGNDG +
Sbjct: 50 LAVNAGANIINISAGQLTDTGE--AERWLEDAVRLCQENNILIVAAAGNDGCECLHVPAA 107
Query: 301 APWLLTVGA 309
P +L VGA
Sbjct: 108 LPGVLAVGA 116
|
This model describes a protease domain associated with the maturation of various members of the cyanobactin family of ribosomally produced, heavily modified bioactive metabolites. Members include the PatA protein and C-terminal domain of the PatG protein of Prochloron didemni, TenA and a region of TenG from Nostoc spongiaeforme var. tenue, etc. Length = 602 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 161 FNKGLIANNPKLK--------VRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIAR 212
F+ GL ++P + + DG GHGT + + A + +
Sbjct: 15 FDTGLAKDHPHFRNVKERTNWTNEKTLDDGLGHGTFVAGVIASSREQ-----------CL 63
Query: 213 GIAPRACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAV 271
G AP A + +++ + V Y+S + A + A+ +DVL+LS+G G D
Sbjct: 64 GFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIG----GPDFMDKPFVD 119
Query: 272 ATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTID 313
+ +++V++ GNDGP Y TL N A + +G G ID
Sbjct: 120 KVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID 161
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.2 bits (124), Expect = 6e-07
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 447 VDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMAT 506
+D + F + + DI APG +L S S ++++ + + +SGTSMA
Sbjct: 312 LDLSDTVASFSNDGSPTGVDIAAPGVNIL-SLSAVNTLPGDGAD-----YVTLSGTSMAA 365
Query: 507 PHVAGVAGLLKAAHP-DWSPAAIRSALVTTA---SPLDNTLSHIKDASNNNFPASPLDMG 562
PHV+GVA L+ +A+P + +PA +R+ +VTTA +N + A+ + G
Sbjct: 366 PHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAATDVAGG 425
Query: 563 AGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQI 599
N + + T L +
Sbjct: 426 TLPANGTGSSQGAVEAPGTLALLTPALGGTVPAAVAV 462
|
Length = 508 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
SYS+ G ++ D++APG + + + S + G Y +F SGTS A+P
Sbjct: 168 SYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGD-YPGGGYGSF---SGTSFASPV 215
Query: 509 VAGVAGLLKAAHPDWSPAAIRSALVTT 535
AGVA L+ +A+P+ +PA + L +T
Sbjct: 216 AAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Query: 465 PDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWS 524
DI APG ++++ G MSGTSMATPHVAGVA L W+
Sbjct: 213 VDIAAPGVDIVSAAPG--------GGY-----RSMSGTSMATPHVAGVAAL-------WA 252
Query: 525 PAAIRSALVTTASPLDNTLSHIKDASNNNF--PASPLDMGAG 564
A ++ A+ L L A F D G G
Sbjct: 253 EALPKAGGRALAALLQARL---TAARTTQFAPGLDLPDRGVG 291
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSL-VLASWSPISSVAEVQSGLLYSNFNLMSGTSMATP 507
S+S+ G ++ DI APG +L++ + N+ +SGTSMA P
Sbjct: 200 SFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGG-------GNYEYLSGTSMAAP 244
Query: 508 HVAGVAGLLKAAHPDW-SPAAIRSALVTT 535
HV+GVA L+ + PD +P IR L +
Sbjct: 245 HVSGVAALVLSKFPDVFTPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 65/244 (26%), Positives = 83/244 (34%), Gaps = 48/244 (19%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
AW G G+I+ +VDTG+ + D G+ N
Sbjct: 2 AWEFGTGGPGIIVAVVDTGV---DGTHPDLQ-----GNGDGDG------YDPAVNGYNFV 47
Query: 158 ARFFNKGLIANNPKLKVRMNSPRDGSGHGTH-TSSIAAGNYVKGSSYFGYATGIARGIAP 216
N G I N S G GHGTH +IAA N G G+ GIA
Sbjct: 48 ---PNVGDIDN-------DVSV--GGGHGTHVAGTIAAVNNNGG--------GVG-GIAG 86
Query: 217 RACVA-----MYKAIWRHGVYSSD--VVAAIDQALQDGVDVLSLSLGLSLNGIF--LEDD 267
VA M I+ Y D V AAI A +G +L S G + GI+ L D
Sbjct: 87 AGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKD 146
Query: 268 AIAVA---TFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGN 324
A + G +VV SAGN P ++ V A + G
Sbjct: 147 AFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTNDNKASFSNYGR 206
Query: 325 GVQI 328
V I
Sbjct: 207 WVDI 210
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 22/148 (14%)
Query: 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYK-AIWRHGVYSSDVVA- 238
D GHGT + I AG +G + G A AR + R A ++ GV +A
Sbjct: 49 DCDGHGTLVAGIIAGRPGEGDGFSGVAPD-ARILPIRQTSAAFEPDEGTSGVGDLGTLAK 107
Query: 239 AIDQALQDGVDVLSLSLGLSLNGIFLEDD-AIAVATFAAMEKGVLVVASAGNDG------ 291
AI +A G DV+++SL L DD + A A++KGV+VVA+AGN G
Sbjct: 108 AIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVVVAAAGNTGGDGQKT 167
Query: 292 ----PSYWTLINGAPWLLTVGAGTIDRE 315
P+++ P +L VG+ IDR+
Sbjct: 168 TVVYPAWY------PGVLAVGS--IDRD 187
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.2 bits (116), Expect = 6e-06
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYS--S 234
D +GHGTH + A + G+AP A + + K + G S
Sbjct: 177 PPFLDDNGHGTHVAGTIAAVIFDNGAGVA-------GVAPGAKLLLVKVLGSGGGSGELS 229
Query: 235 DVVAAIDQALQDG--VDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGP 292
DV I+ A G DV++LSLG SL+ A+A A GV++VA+AGNDG
Sbjct: 230 DVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAAN-AGGVVIVAAAGNDGS 288
Query: 293 SYWTLINGAP 302
+ P
Sbjct: 289 NASGGDLAYP 298
|
Length = 508 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 184 GHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQA 243
GHGT + +AA G++ G G+A G + Y SD+ AI A
Sbjct: 41 GHGTACAGVAAA---VGNNGLG-VAGVAPGAKLMPVRIADSLGYA---YWSDIAQAITWA 93
Query: 244 LQDGVDVLSLSLGLSLNGIFLEDDAI-AVATFAAMEKGVLVVASAGNDGPSYWTLINGAP 302
+G DV+S S G S + AI AT+ KG +V+ +AGN G S + P
Sbjct: 94 ADNGADVISNSWGGS-DSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANP 152
Query: 303 WLLTVGA 309
++ V A
Sbjct: 153 SVIAVAA 159
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQAL 244
HGT +S+ AG + A +A G + + A+D
Sbjct: 38 HGTAVASLLAGAGAQRPGLLPGADLYGA-------DVFGRAGGGEGASALALARALDWLA 90
Query: 245 QDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPS 293
+ GV V+++SL N + A+A AA +G+++VA+AGNDGP+
Sbjct: 91 EQGVRVVNISLAGPPNALL--AAAVA----AAAARGMVLVAAAGNDGPA 133
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 27/141 (19%)
Query: 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRA-CVAMYKAIWRHGVY--SSDVV 237
D HGTH + IAA ++ + G+AP A V++ R G + +V
Sbjct: 183 DSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALV 234
Query: 238 AAIDQALQDGVDVLSLSLG----LSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPS 293
A+ A++ D++++S G +G +E + A + GV+ V+SAGN+GP+
Sbjct: 235 RAMIAAIETKCDLINMSYGEATHWPNSGRIIE-----LMNEAVNKHGVIFVSSAGNNGPA 289
Query: 294 YWTLINGAPW-----LLTVGA 309
T+ GAP ++ VGA
Sbjct: 290 LSTV--GAPGGTTSSVIGVGA 308
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
S+SSRGP S PKPD+ A G+ +W+P + + F+L GTSMATP
Sbjct: 223 SWSSRGP--SIAGDPKPDLAAIGAF---AWAPGRVLDSGGALDGNEAFDLFGGTSMATPM 277
Query: 509 VAGVAGLLKAAHPD------WSPAAIRSALVTTA 536
AG A L+ +A + + P +R+ L++TA
Sbjct: 278 TAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 440 GTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSN---- 495
+ +S GP P KPD++A G + S ++ ++ S+
Sbjct: 191 SAVGPAPAGATTSSGPGSPGPI--KPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGG 248
Query: 496 -FNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537
F + GTS A P A +A L A P+ SP IR+ L+ +A
Sbjct: 249 GFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 45/153 (29%), Positives = 55/153 (35%), Gaps = 28/153 (18%)
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDV 236
P D +GHGTHT GN G G A G AR IA RA R+G +D
Sbjct: 46 PLPYDDNGHGTHTMGTMVGNDGDGQQ-IGVAPG-ARWIACRALD-------RNGGNDADY 96
Query: 237 VAAIDQAL------------QDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVV 284
+ L DV++ S G A+A A G+ V
Sbjct: 97 LRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVAAWRAA----GIFPV 152
Query: 285 ASAGNDGPSYWTLINGA---PWLLTVGAGTIDR 314
+AGNDGP TL P VGA +
Sbjct: 153 FAAGNDGPRCSTLNAPPANYPESFAVGATDRND 185
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDV 236
N P + HGTH + I A G G A + I P V D+
Sbjct: 79 NGPISDADHGTHVAGIIAAVRDNGIGIDGVADNVK--IMPLRIVPNGDE------RDKDI 130
Query: 237 VAAIDQALQDGVDVLSLSLG--LSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDG 291
AI A+ +G V+++S G S N ++ DDAI A KGVL+V +AGNDG
Sbjct: 131 ANAIRYAVDNGAKVINMSFGKSFSPNKEWV-DDAIKYAE----SKGVLIVHAAGNDG 182
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 22/164 (13%)
Query: 181 DGSGHGTHTSSIAAGN-YVKGSSYFGYATGIARGIAPRACVA----------MYKAIWRH 229
D HGT +S+AAG ++ + Y + RGIAP A +A +Y +W
Sbjct: 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTA 113
Query: 230 GVYSSDVVAAIDQALQDGVDVLSLSLGLS---LNG-IFLEDDAIAVATFAAMEKGVLVVA 285
G D + VDV+S S G+S G D + V GV +V+
Sbjct: 114 GFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVS 173
Query: 286 SAGNDGPSYWTLINGAP----WLLTVGAGTIDREFEGSLTLGNG 325
+AGN GP Y T+ AP ++VGA T + ++ G
Sbjct: 174 AAGNGGPGYGTI--TAPGAASLAISVGAAT-NFDYRPFYLFGYL 214
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 498 LMSGTSMATPHVAGVAGLL------KAAHPDWSPAAIRSALVTTASPLD 540
SGTS A VAG+A LL + A PD P A+R AL+ TA+P D
Sbjct: 207 RRSGTSFAAAIVAGIAALLLSLQLRRGAPPD--PLAVRRALLETATPCD 253
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 25/103 (24%)
Query: 449 SYSSRGPFLSCPNIP------KPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGT 502
+SSRG ++ +P KPDI+ GS V S L +SGT
Sbjct: 168 RFSSRG--MTTWELPGGYGRVKPDIVTYGSGVYGS-------------KLKGGCRALSGT 212
Query: 503 SMATPHVAGVAGLLKAAHPD----WSPAAIRSALVTTASPLDN 541
S+A+P VAG LL + P+ +PA+++ AL+ +A+ L
Sbjct: 213 SVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLPG 255
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease, PatA/PatG family | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 500 SGTSMATPHVAGVAGLLKAAH------PDWSPAAIRSALVTTASPLD 540
SGTS ATP V GVA LL + PD P A+R+AL+ +A P D
Sbjct: 158 SGTSFATPVVTGVAALLLSLQLQQGETPD--PQAVRTALLNSAIPCD 202
|
This model describes a protease domain associated with the maturation of various members of the cyanobactin family of ribosomally produced, heavily modified bioactive metabolites. Members include the PatA protein and C-terminal domain of the PatG protein of Prochloron didemni, TenA and a region of TenG from Nostoc spongiaeforme var. tenue, etc. Length = 602 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 477 SWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTA 536
S S A + + SGTS A P VAGV L+ A+P SP RS L TA
Sbjct: 223 SQLDRSCAAFPDGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTA 282
Query: 537 SPLDNTLSHIKDASNNNFPASP 558
+ K AS A P
Sbjct: 283 RDV------TKGASAQGTSAGP 298
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 467 ILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPA 526
A G ++A L SG S A PHV G+ LL + PD
Sbjct: 165 FSADGVDIIAPAP--------HGRYLTV-----SGNSFAAPHVTGMVALLLSEKPDIDAN 211
Query: 527 AIRSALVTTAS 537
++ L A
Sbjct: 212 DLKRLLQRLAV 222
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 29/174 (16%)
Query: 142 SGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGS 201
SGV ++ + +G + G + + ++ V D GHGT + A
Sbjct: 9 SGV--DTDHPD---LGNLALD-GEVTIDLEIIVVSAEGGDKDGHGT---ACA-------- 51
Query: 202 SYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDV-VAAIDQALQDGVDVLSLSLGLSLN 260
GI + AP A + K + G +S V A+ +++ + +++LSLG +
Sbjct: 52 -------GIIKKYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD 104
Query: 261 GIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDR 314
F + A + G ++VA+A N+ T P ++ V + T D
Sbjct: 105 RDFPLLKELLE---YAYKAGGIIVAAAPNNND-IGTPPASFPNVIGVKSDTADD 154
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.001
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 362 NSIVVC-REDSSISSQIDNAVAAGVLGAVFISNSA-----LLEVYIRSSFPAAFINVNDG 415
IV+ R S + +NA AG G + +N + + P FI+ DG
Sbjct: 34 GKIVLVRRGGCSFVEKAENAQRAGAAGVIIYNNDTGGLGGTVGDPSDVTIPVVFISYEDG 93
Query: 416 QTI 418
+ +
Sbjct: 94 EAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 40/158 (25%), Positives = 52/158 (32%), Gaps = 45/158 (28%)
Query: 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARG-IAPRACVAMYKAIWRHGV-----YSS 234
D GHGT + +A +G T G P + + + +G Y
Sbjct: 36 DDLGHGTAVAGLAL---------YGDLTLPGNGLPRPGCRLESVRVLPPNGENDPELYGD 86
Query: 235 DVVAAIDQAL---QDGVDVLSLSLGLSLNGIFLED--------DAIAVATFAAMEKGVLV 283
+ AI +A+ D V V +LSLG S I D +A E VL
Sbjct: 87 ITLRAIRRAVIQNPDIVRVFNLSLG-SPLPIDDGRPSSWAAALDQLAA------EYDVLF 139
Query: 284 VASAGNDGPSYWTLINGAPWL------------LTVGA 309
V SAGN G LTVGA
Sbjct: 140 VVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGA 177
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 728 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 99.98 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 99.98 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.91 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.81 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.73 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.3 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.21 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.63 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.58 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.5 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.49 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.48 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.47 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.46 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.43 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.4 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.4 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.36 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.31 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.3 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.29 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.2 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.2 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.15 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.14 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.09 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.02 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 97.29 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 96.97 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 95.94 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 95.89 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 95.75 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 95.58 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 95.48 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 95.38 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.06 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 94.91 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 92.75 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 91.94 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.73 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 89.96 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 89.13 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 85.98 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 82.54 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-53 Score=452.55 Aligned_cols=303 Identities=52% Similarity=0.835 Sum_probs=259.5
Q ss_pred ccccCCCCccccCCCCCCC--CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceee
Q 004824 79 LAVHTTHTSEFLGLSSLSG--AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLI 156 (728)
Q Consensus 79 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kii 156 (728)
++++++++++|+++...+. +|..+++|+||+|||||||||++||+|.+....+++..|.+.|..+..+....|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4688999999999977665 47889999999999999999999999999888899999999999998888788999999
Q ss_pred eeeeccccccccCC-CCccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeC-CCCChH
Q 004824 157 GARFFNKGLIANNP-KLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWR-HGVYSS 234 (728)
Q Consensus 157 g~~~~~~~~~~~~~-~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~-~g~~~~ 234 (728)
+.++|.++++.... ....+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++. ..+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 99999987654322 2233456678899999999999999987666556666677899999999999999998 458899
Q ss_pred HHHHHHHHHHHCCCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccc
Q 004824 235 DVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDR 314 (728)
Q Consensus 235 ~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~ 314 (728)
++++||++|++++++|||||||. .....+.+.+..++..+.++|++||+||||+|+...+.++..||+++||+.+
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~--~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~--- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGG--GSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST--- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCC--CCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc---
Confidence 99999999999999999999999 3334566777888888999999999999999988888888999999999821
Q ss_pred eeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCC
Q 004824 315 EFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNS 394 (728)
Q Consensus 315 ~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 394 (728)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCce
Q 004824 395 ALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLV 474 (728)
Q Consensus 395 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 474 (728)
+||||+|||.+|
T Consensus 236 --------------------------------------------------------------------~~~di~apG~~i 247 (307)
T cd04852 236 --------------------------------------------------------------------LKPDIAAPGVDI 247 (307)
T ss_pred --------------------------------------------------------------------CccceeeccCce
Confidence 578999999999
Q ss_pred eeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 475 LASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 475 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
++++..... .........|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus 248 ~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 248 LAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred eecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999874311 111222368999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=437.32 Aligned_cols=291 Identities=20% Similarity=0.218 Sum_probs=210.0
Q ss_pred CCCCCC--CCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCcee---eeeeeccccccccC
Q 004824 95 LSGAWP--ASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKL---IGARFFNKGLIANN 169 (728)
Q Consensus 95 ~~~~~~--~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~ki---ig~~~~~~~~~~~~ 169 (728)
++.+|+ .+..|+||+|||||||||++||+|.+.-... +....|. ..++. +++.. +.+++|.++
T Consensus 303 ~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Gr----dgiDd--D~nG~vdd~~G~nfVd~----- 370 (639)
T PTZ00262 303 LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGR----KGIDD--DNNGNVDDEYGANFVNN----- 370 (639)
T ss_pred chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCc----ccccc--ccCCcccccccccccCC-----
Confidence 345565 4567999999999999999999998641000 0000010 00000 11111 112333321
Q ss_pred CCCccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCC
Q 004824 170 PKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGV 248 (728)
Q Consensus 170 ~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~ 248 (728)
...+.|..||||||||||||...++. | +.||||+|+|+.+|+++..+ +..+++++||+||++.|+
T Consensus 371 ------~~~P~D~~GHGTHVAGIIAA~gnN~~---G-----i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA 436 (639)
T PTZ00262 371 ------DGGPMDDNYHGTHVSGIISAIGNNNI---G-----IVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREA 436 (639)
T ss_pred ------CCCCCCCCCcchHHHHHHhccccCCC---c-----eeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCC
Confidence 13467899999999999999864332 2 38999999999999998766 788999999999999999
Q ss_pred cEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc--------------ccc----CCCceEEeccc
Q 004824 249 DVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT--------------LIN----GAPWLLTVGAG 310 (728)
Q Consensus 249 dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~ap~vitVgas 310 (728)
+|||||||+. .+...+..++..|.++|++||+||||+|..... ++. ..|++|+|||.
T Consensus 437 ~VINmSlG~~-----~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv 511 (639)
T PTZ00262 437 HMINGSFSFD-----EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNL 511 (639)
T ss_pred CEEEeccccC-----CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeec
Confidence 9999999983 234566778889999999999999999864321 121 24677888774
Q ss_pred cccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEE
Q 004824 311 TIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVF 390 (728)
Q Consensus 311 t~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~ 390 (728)
..+..
T Consensus 512 ~~d~~--------------------------------------------------------------------------- 516 (639)
T PTZ00262 512 IKDKN--------------------------------------------------------------------------- 516 (639)
T ss_pred cCCCC---------------------------------------------------------------------------
Confidence 31110
Q ss_pred ecCCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeC
Q 004824 391 ISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAP 470 (728)
Q Consensus 391 ~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~AP 470 (728)
....++.||++|. .++||+||
T Consensus 517 ----------------------------------------------------~~~s~s~~Snyg~-------~~VDIaAP 537 (639)
T PTZ00262 517 ----------------------------------------------------NQYSLSPNSFYSA-------KYCQLAAP 537 (639)
T ss_pred ----------------------------------------------------CcccccccccCCC-------CcceEEeC
Confidence 0012355666663 24699999
Q ss_pred CCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCC
Q 004824 471 GSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDAS 550 (728)
Q Consensus 471 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~ 550 (728)
|++|+++++. +.|..++|||||||||||+||||++++|+|++.+|+++|++||.++....
T Consensus 538 G~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~~------- 597 (639)
T PTZ00262 538 GTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLK------- 597 (639)
T ss_pred CCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCCC-------
Confidence 9999999885 58999999999999999999999999999999999999999998763211
Q ss_pred CCCCCCCCCccC-CCccCccccCCCCcee
Q 004824 551 NNNFPASPLDMG-AGHINPNKALDPGLVY 578 (728)
Q Consensus 551 ~~~~~~~~~~~G-~G~in~~~Al~~~lv~ 578 (728)
. .+| .|+||+.+|++..+-+
T Consensus 598 ------n--~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 598 ------N--KVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred ------C--ccccCcEEcHHHHHHHHHhc
Confidence 1 233 3899999999866544
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=400.78 Aligned_cols=243 Identities=29% Similarity=0.412 Sum_probs=196.3
Q ss_pred CCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCC
Q 004824 99 WPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNS 178 (728)
Q Consensus 99 ~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 178 (728)
|+++++|+||+|||||||||.+||+|.+. +...+|.. ...
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~----------------------------~~~~~~~~------------~~~ 40 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV----------------------------KERTNWTN------------EKT 40 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc----------------------------ccccccCC------------CCC
Confidence 89999999999999999999999999742 00011111 023
Q ss_pred CCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEecccc
Q 004824 179 PRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGL 257 (728)
Q Consensus 179 ~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~ 257 (728)
..|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ ...++++++|+||++++++|||||||.
T Consensus 41 ~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~ 109 (255)
T cd07479 41 LDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGG 109 (255)
T ss_pred CCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccC
Confidence 45778999999999999742 137999999999999998776 567789999999999999999999998
Q ss_pred CCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc--cccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCC
Q 004824 258 SLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT--LINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYP 335 (728)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~ 335 (728)
. . +...++..++.++.++|++||+||||+|+...+ .+...+++|+|||..
T Consensus 110 ~--~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~------------------------ 161 (255)
T cd07479 110 P--D--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID------------------------ 161 (255)
T ss_pred C--C--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec------------------------
Confidence 3 2 223455666778889999999999999976443 455678999999832
Q ss_pred CCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccH
Q 004824 336 GNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDG 415 (728)
Q Consensus 336 ~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g 415 (728)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCC----CCCCCCCCcEEeCCCceeeccCCCCCccccccCc
Q 004824 416 QTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFL----SCPNIPKPDILAPGSLVLASWSPISSVAEVQSGL 491 (728)
Q Consensus 416 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~----~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 491 (728)
..+.++.|||+|++. ...+.+||||+|||.+|+++...
T Consensus 162 ---------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~----------- 203 (255)
T cd07479 162 ---------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK----------- 203 (255)
T ss_pred ---------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC-----------
Confidence 123678999999652 11244899999999999987664
Q ss_pred ccCCceeeccccchhHHHHHHHHHHhhhCC----CCCHHHHHHHHHhccccCC
Q 004824 492 LYSNFNLMSGTSMATPHVAGVAGLLKAAHP----DWSPAAIRSALVTTASPLD 540 (728)
Q Consensus 492 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p----~lsp~~ik~~L~~TA~~~~ 540 (728)
+.|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 204 --~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 --GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred --CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 5788999999999999999999999998 7999999999999999864
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-48 Score=404.33 Aligned_cols=270 Identities=27% Similarity=0.299 Sum_probs=201.4
Q ss_pred CCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCC
Q 004824 102 SNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRD 181 (728)
Q Consensus 102 ~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d 181 (728)
+++|+||+|||||||||..||++.+......+.. ..+... .....|
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~-----------------------~~~~~~-----------~~~~~d 46 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGN-----------------------VNVLGD-----------LDGGSG 46 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcc-----------------------eeeccc-----------cCCCCC
Confidence 5789999999999999999986543211111111 111110 123457
Q ss_pred CCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEEeccccCCCC
Q 004824 182 GSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNG 261 (728)
Q Consensus 182 ~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 261 (728)
..+||||||||| .||||+|+|+.+|+. ...+++++||+||+++|++|||||||.. .
T Consensus 47 ~~gHGT~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~--~ 102 (275)
T cd05562 47 GGDEGRAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYL--N 102 (275)
T ss_pred CCchHHHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEeccccc--C
Confidence 889999999999 489999999999874 4578999999999999999999999983 3
Q ss_pred CCC-hhhHHHHHHHHHHhC-CcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCC
Q 004824 262 IFL-EDDAIAVATFAAMEK-GVLVVASAGNDGPSYW-TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNS 338 (728)
Q Consensus 262 ~~~-~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~ 338 (728)
.+. ....+..++.++.++ |++||+||||+|.... ..+...|++|+|||.+.+.........+ .
T Consensus 103 ~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~-------------~- 168 (275)
T cd05562 103 EPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA-------------P- 168 (275)
T ss_pred CCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-------------c-
Confidence 332 334577777788887 9999999999998543 4467889999999965332210000000 0
Q ss_pred CCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHH
Q 004824 339 SPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTI 418 (728)
Q Consensus 339 ~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l 418 (728)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCC-ceeeccCCCCCccccccCcccCCce
Q 004824 419 IDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGS-LVLASWSPISSVAEVQSGLLYSNFN 497 (728)
Q Consensus 419 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~ 497 (728)
.......+.|+++||+.+.. +||||+|||. ++.+.+.. +.|.
T Consensus 169 ----------------------~~~~s~~~~~~~~~p~~~~~--~~~di~Apgg~~~~~~~~~-------------~~~~ 211 (275)
T cd05562 169 ----------------------GGTPSSFDPVGIRLPTPEVR--QKPDVTAPDGVNGTVDGDG-------------DGPP 211 (275)
T ss_pred ----------------------CCCcccccCCcccCcCCCCC--cCCeEEcCCcccccCCCcC-------------Ccee
Confidence 00011345678899987765 9999999975 44544432 6799
Q ss_pred eeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 498 LMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 498 ~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
.++|||||||||||++|||+|++|+|++++||++|++||+++... ..+..||||+||+.+|++
T Consensus 212 ~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~-------------g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 212 NFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP-------------GYDNASGSGLVDADRAVA 274 (275)
T ss_pred ecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC-------------CCCCCcCcCcccHHHHhh
Confidence 999999999999999999999999999999999999999887432 244589999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=415.12 Aligned_cols=312 Identities=31% Similarity=0.418 Sum_probs=233.8
Q ss_pred CCCCCC-CCCCcEEEEEccCCCCCCCCCCCCCCCCCCC-----CcccccccCCccCcccCCceeeeeeeccccccccCCC
Q 004824 98 AWPASN-YGKGVIIGLVDTGIWPESQSFSDEGMAKVPP-----RWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPK 171 (728)
Q Consensus 98 ~~~~~~-~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~-----~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~ 171 (728)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+..+ ...+++.+++..++|.++.+.
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCc----
Confidence 688877 9999999999999999999999754332111 111222111 123467788888888765321
Q ss_pred CccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeC--C-CCChHHHHHHHHHHHHCCC
Q 004824 172 LKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWR--H-GVYSSDVVAAIDQALQDGV 248 (728)
Q Consensus 172 ~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~--~-g~~~~~i~~ai~~a~~~g~ 248 (728)
.....+..+|||||||||+|...+..+ ...+.||||+|+|+.+|+++. . ......+++|++++++.|+
T Consensus 75 ----~~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~ 145 (346)
T cd07475 75 ----ILDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGA 145 (346)
T ss_pred ----cCCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 111457889999999999998754321 123489999999999999973 3 3778889999999999999
Q ss_pred cEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc----------------cccCCCceEEeccccc
Q 004824 249 DVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT----------------LINGAPWLLTVGAGTI 312 (728)
Q Consensus 249 dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~----------------~~~~ap~vitVgast~ 312 (728)
+|||||||.. .........+..++..+.++|++||+||||+|..... .+...+++|+||+...
T Consensus 146 ~Vin~S~G~~-~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~ 224 (346)
T cd07475 146 DVINMSLGST-AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK 224 (346)
T ss_pred CEEEECCCcC-CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccc
Confidence 9999999995 2222445667777888999999999999999865432 1223456777766320
Q ss_pred cceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEec
Q 004824 313 DREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFIS 392 (728)
Q Consensus 313 ~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n 392 (728)
.
T Consensus 225 ~------------------------------------------------------------------------------- 225 (346)
T cd07475 225 K------------------------------------------------------------------------------- 225 (346)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCC
Q 004824 393 NSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGS 472 (728)
Q Consensus 393 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~ 472 (728)
........++.||+|||+...+ +||||+|||.
T Consensus 226 ----------------------------------------------~~~~~~~~~~~~S~~G~~~~~~--~~pdi~apG~ 257 (346)
T cd07475 226 ----------------------------------------------VPNPNGGQMSGFSSWGPTPDLD--LKPDITAPGG 257 (346)
T ss_pred ----------------------------------------------cCCCCCCccCCCcCCCCCcccC--cCCeEEeCCC
Confidence 0012344788999999999876 9999999999
Q ss_pred ceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhh----CCCCCHHH----HHHHHHhccccCCCCCC
Q 004824 473 LVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAA----HPDWSPAA----IRSALVTTASPLDNTLS 544 (728)
Q Consensus 473 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~lsp~~----ik~~L~~TA~~~~~~g~ 544 (728)
+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+.....
T Consensus 258 ~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~- 323 (346)
T cd07475 258 NIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE- 323 (346)
T ss_pred CeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccC-
Confidence 99998775 57899999999999999999999997 78999876 7889999998532111
Q ss_pred ccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 545 HIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 545 ~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
. ...++.+.++|+|+||+.+||+
T Consensus 324 -----~-~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 324 -----D-TKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred -----C-CCccCCccccCcchhcHHHhhC
Confidence 0 1456678899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=404.63 Aligned_cols=286 Identities=33% Similarity=0.382 Sum_probs=189.4
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCC
Q 004824 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSG 184 (728)
Q Consensus 105 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~g 184 (728)
|+||+|||||||||++||+|.++.. ..|... |+ +...++...++..+ ....+.|..|
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~------~d---~~~~~~~g~d~~~~----------~~~~~~D~~g 57 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLK------FD---YKAYLLPGMDKWGG----------FYVIMYDFFS 57 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccc------cC---cCCCccCCcCCCCC----------ccCCCCCccc
Confidence 7999999999999999999975411 011100 00 00111111111111 0124678999
Q ss_pred ChhhHHHHhccCCcCCCCccccc-CcccccccCCCeEEEEEeeeCCC-CChHHHHH-------HHHHHH--HCCCcEEEe
Q 004824 185 HGTHTSSIAAGNYVKGSSYFGYA-TGIARGIAPRACVAMYKAIWRHG-VYSSDVVA-------AIDQAL--QDGVDVLSL 253 (728)
Q Consensus 185 HGThVAgiiaG~~~~~~~~~G~~-~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~-------ai~~a~--~~g~dVIN~ 253 (728)
|||||||||||+.....+.+++. ...+.||||+|+|+.+|+|...+ .....++. +++|+. +++++||||
T Consensus 58 HGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~ 137 (311)
T cd07497 58 HGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISN 137 (311)
T ss_pred cchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEe
Confidence 99999999999865433322211 22358999999999999997543 32222332 344443 679999999
Q ss_pred ccccCCCCCCC-----hhhHHHHHHHH-HHhCCcEEEEecCCCCCCCC--ccccCCCceEEeccccccceeeeEEEcCCC
Q 004824 254 SLGLSLNGIFL-----EDDAIAVATFA-AMEKGVLVVASAGNDGPSYW--TLINGAPWLLTVGAGTIDREFEGSLTLGNG 325 (728)
Q Consensus 254 SlG~~~~~~~~-----~~~~~~~~~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~ap~vitVgast~~~~~~~~~~~~~g 325 (728)
|||.. ...+ ..+.....+.. +.++|+++|+||||+|+... ..+..++++|+|||++.....+... .
T Consensus 138 S~G~~--~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~-~--- 211 (311)
T cd07497 138 SWGIS--NFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL-F--- 211 (311)
T ss_pred cCCcC--CCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh-h---
Confidence 99983 2211 11222222222 24899999999999998644 3456789999999975321100000 0
Q ss_pred cEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCc
Q 004824 326 VQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSF 405 (728)
Q Consensus 326 ~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 405 (728)
T Consensus 212 -------------------------------------------------------------------------------- 211 (311)
T cd07497 212 -------------------------------------------------------------------------------- 211 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcc
Q 004824 406 PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVA 485 (728)
Q Consensus 406 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 485 (728)
.......+.++.||||||+.+++ +||||+|||++|+++.+......
T Consensus 212 --------------------------------~~~~~~~~~~~~fSs~Gp~~~g~--~kPdv~ApG~~i~s~~~~~~~~~ 257 (311)
T cd07497 212 --------------------------------GYLPGGSGDVVSWSSRGPSIAGD--PKPDLAAIGAFAWAPGRVLDSGG 257 (311)
T ss_pred --------------------------------ccccCCCCCccccccCCCCcccC--CCCceeccCcceEeecccCCCCc
Confidence 00012244789999999998865 99999999999999876532100
Q ss_pred ccccCcccCCceeeccccchhHHHHHHHHHHhhhCC------CCCHHHHHHHHHhcc
Q 004824 486 EVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHP------DWSPAAIRSALVTTA 536 (728)
Q Consensus 486 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p------~lsp~~ik~~L~~TA 536 (728)
.......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 258 ---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 258 ---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred ---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 011124799999999999999999999999876 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=421.46 Aligned_cols=404 Identities=24% Similarity=0.290 Sum_probs=241.6
Q ss_pred CCCCCcEEEEEccCCCCCCCCCCC-CCCCCCCCCcccccccCCccCcccCCceeeeeeeccc-cccc-cCCCCccCCCCC
Q 004824 103 NYGKGVIIGLVDTGIWPESQSFSD-EGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNK-GLIA-NNPKLKVRMNSP 179 (728)
Q Consensus 103 ~~G~Gv~VgVIDtGid~~Hp~f~~-~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~-~~~~-~~~~~~~~~~~~ 179 (728)
++|+||+|||||||||+.||+|.+ ++.+++...|++....+.. .....+...+.+ ..+. .....+.+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP------PGGYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC------CccccCceEEeHHHHHHHHhcCCccccCcC
Confidence 479999999999999999999995 4678999999988765432 111222222221 1111 111223334456
Q ss_pred CCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-----------CChHHHHHHHHHHHHC--
Q 004824 180 RDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-----------VYSSDVVAAIDQALQD-- 246 (728)
Q Consensus 180 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-----------~~~~~i~~ai~~a~~~-- 246 (728)
.|..||||||||||||+..++.. +.||||+|+|+++|++...+ +..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~~~~~--------~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~ 146 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGDNNPD--------FKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKAL 146 (455)
T ss_pred CCCCCchHHHHHHHhcCCCCCCC--------ccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHH
Confidence 78999999999999999754322 38999999999999998765 4678999999999974
Q ss_pred ---CCcEEEeccccCCCCCCChhhHHHHHHHHHHhC-CcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEc
Q 004824 247 ---GVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEK-GVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTL 322 (728)
Q Consensus 247 ---g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~ 322 (728)
.+.|||||||.. ...+...+.+..++..+..+ |++||+||||+|....+...... ..+ ..-...+.+
T Consensus 147 ~~~~p~VInlSlG~~-~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~---~~~-----~~~~ie~~v 217 (455)
T cd07478 147 ELNKPLVINISLGTN-FGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV---PNG-----ETKTVELNV 217 (455)
T ss_pred HhCCCeEEEEccCcC-CCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec---cCC-----ceEEEEEEE
Confidence 378999999985 44555667788888777765 99999999999986544332100 000 000111222
Q ss_pred CCCcEEeeeecCCCCCCCCeeeEEEc--cCCCCCccCc------c--Ccc-eEEEEc-c------CCchhHHHHHHHHcC
Q 004824 323 GNGVQINFKSLYPGNSSPSQVSLAFM--DACDSVTELK------K--VIN-SIVVCR-E------DSSISSQIDNAVAAG 384 (728)
Q Consensus 323 ~~g~~~~g~s~~~~~~~~~~~~lv~~--~~c~~~~~~~------~--~~g-kiv~~~-g------~~~~~~~~~~~~~~G 384 (728)
+.++.-....+|......-.+.++.. +......... + +.+ +|.+.. . ...+..+..+ ...|
T Consensus 218 ~~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~-~~~G 296 (455)
T cd07478 218 GEGEKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKN-IKPG 296 (455)
T ss_pred CCCCcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccC-CCcc
Confidence 22211111111111110001111110 0000000000 0 001 111110 0 0000001111 1234
Q ss_pred ceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeE-----ec-c-cCCCccccccCCCCCC
Q 004824 385 VLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTV-----IG-T-KPAPMVDSYSSRGPFL 457 (728)
Q Consensus 385 a~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~-----~~-~-~~~~~~a~fSS~GP~~ 457 (728)
..-+.+...... ....+.|+|.-.+...+. .++.. ++..+|+.+.+. ++ . .....++.||||||+.
T Consensus 297 iW~i~~~~~~~~-~g~~~~Wlp~~~~~~~~t----~f~~~--~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~ 369 (455)
T cd07478 297 IWKIRLTGVSIT-DGRFDAWLPSRGLLSENT----RFLEP--DPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR 369 (455)
T ss_pred ceEEEEEeccCC-CceEEEEecCcCcCCCCC----EeecC--CCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC
Confidence 444444443322 111233333222222111 11111 223344443221 11 1 2234699999999999
Q ss_pred CCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhC------CCCCHHHHHHH
Q 004824 458 SCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAH------PDWSPAAIRSA 531 (728)
Q Consensus 458 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------p~lsp~~ik~~ 531 (728)
+.+ +||||+|||++|+++++. +.|..++|||||||||||++|||+|.+ |.|++++||++
T Consensus 370 ~~~--~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~ 434 (455)
T cd07478 370 DGR--IKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTY 434 (455)
T ss_pred CCC--cCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHH
Confidence 876 999999999999999985 689999999999999999999999875 56799999999
Q ss_pred HHhccccCCCCCCccccCCCCCCCCCCCccCCC
Q 004824 532 LVTTASPLDNTLSHIKDASNNNFPASPLDMGAG 564 (728)
Q Consensus 532 L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G 564 (728)
|++||++... ..+++.+||||
T Consensus 435 L~~tA~~~~~------------~~~pn~~~GyG 455 (455)
T cd07478 435 LIRGARRRPG------------DEYPNPEWGYG 455 (455)
T ss_pred HHHhCccCCC------------CCCCCCCCCCC
Confidence 9999998752 23466799998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=398.96 Aligned_cols=293 Identities=32% Similarity=0.399 Sum_probs=227.5
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccC
Q 004824 96 SGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVR 175 (728)
Q Consensus 96 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 175 (728)
+.+|+.+++|+||+|||||+|||++||+|.+.-. .+.++.+.+++..... .......+
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~---------------------~~~~~~~~~d~~~~~~-~~~~~~~~ 60 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG---------------------PGCKVAGGYDFVGDDY-DGTNPPVP 60 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC---------------------CCceeccccccCCccc-ccccCCCC
Confidence 5789999999999999999999999999986411 1112333333332110 00111223
Q ss_pred CCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEec
Q 004824 176 MNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLS 254 (728)
Q Consensus 176 ~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S 254 (728)
...+.|..+|||||||||+|+..+ .|+ .||||+|+|+.+|++...+ .....++++|++|++++++|||||
T Consensus 61 ~~~~~d~~gHGT~vAgiia~~~~~----~~~-----~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S 131 (312)
T cd07489 61 DDDPMDCQGHGTHVAGIIAANPNA----YGF-----TGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITAS 131 (312)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----Cce-----EEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeC
Confidence 345667799999999999998643 233 8999999999999998665 667778999999999999999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeeEEEcCCCcEEeee
Q 004824 255 LGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW---TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFK 331 (728)
Q Consensus 255 lG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~ 331 (728)
||.. . .+....+...+.++.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 132 ~g~~--~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------------- 188 (312)
T cd07489 132 LGGP--S-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------------- 188 (312)
T ss_pred CCcC--C-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------------
Confidence 9983 2 223366677778888999999999999987542 3355678899998721
Q ss_pred ecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEee
Q 004824 332 SLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFIN 411 (728)
Q Consensus 332 s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~ 411 (728)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCc
Q 004824 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGL 491 (728)
Q Consensus 412 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 491 (728)
+.||++||+.+.. .||||+|||.+++++++..
T Consensus 189 ------------------------------------~~~s~~g~~~~~~--~kpdv~ApG~~i~~~~~~~---------- 220 (312)
T cd07489 189 ------------------------------------SYFSSWGPTNELY--LKPDVAAPGGNILSTYPLA---------- 220 (312)
T ss_pred ------------------------------------CCccCCCCCCCCC--cCccEEcCCCCEEEeeeCC----------
Confidence 6789999998866 9999999999999988753
Q ss_pred ccCCceeeccccchhHHHHHHHHHHhhhC-CCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccc
Q 004824 492 LYSNFNLMSGTSMATPHVAGVAGLLKAAH-PDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNK 570 (728)
Q Consensus 492 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~-p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~ 570 (728)
.+.|..++|||||||+|||++|||+|++ |.+++.+||++|++||............ ...++..++|+|+||+.+
T Consensus 221 -~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~----~~~~~~~~~G~G~vn~~~ 295 (312)
T cd07489 221 -GGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL----PDLAPVAQQGAGLVNAYK 295 (312)
T ss_pred -CCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc----cCCCCHhhcCcceeeHHH
Confidence 1358999999999999999999999999 9999999999999999987653321100 113566799999999999
Q ss_pred cCCCC
Q 004824 571 ALDPG 575 (728)
Q Consensus 571 Al~~~ 575 (728)
|++..
T Consensus 296 a~~~~ 300 (312)
T cd07489 296 ALYAT 300 (312)
T ss_pred HhcCC
Confidence 99954
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-46 Score=388.08 Aligned_cols=248 Identities=27% Similarity=0.319 Sum_probs=203.8
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCC
Q 004824 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMN 177 (728)
Q Consensus 98 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 177 (728)
+|..+++|+||+|||||+|||++||+|.+....+... +.. ...
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~--------------------------~~~-----------~~~ 44 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFT--------------------------YAA-----------AAC 44 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccC--------------------------ccc-----------cCC
Confidence 7999999999999999999999999998642211000 000 012
Q ss_pred CCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC--CChHHHHHHHHHHHHCCCcEEEecc
Q 004824 178 SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG--VYSSDVVAAIDQALQDGVDVLSLSL 255 (728)
Q Consensus 178 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~Sl 255 (728)
...|..+|||||||||+|+... .+.||||+|+|+.+|++...+ +...++++||+||+++|++||||||
T Consensus 45 ~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~ 114 (267)
T cd07476 45 QDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISG 114 (267)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 3456789999999999987421 137999999999999998654 4477899999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCC
Q 004824 256 GLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYP 335 (728)
Q Consensus 256 G~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~ 335 (728)
|.. .........+..++..+.++|++||+||||+|.....++...|++|+||+..
T Consensus 115 G~~-~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~------------------------ 169 (267)
T cd07476 115 GRL-TQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMD------------------------ 169 (267)
T ss_pred CcC-CCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeec------------------------
Confidence 984 2223345677888888999999999999999988777888899999999842
Q ss_pred CCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccH
Q 004824 336 GNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDG 415 (728)
Q Consensus 336 ~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g 415 (728)
T Consensus 170 -------------------------------------------------------------------------------- 169 (267)
T cd07476 170 -------------------------------------------------------------------------------- 169 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCC
Q 004824 416 QTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSN 495 (728)
Q Consensus 416 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 495 (728)
..+.++.||++|+.. .||||+|||.+|+++.+. +.
T Consensus 170 ---------------------------~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~-------------~~ 204 (267)
T cd07476 170 ---------------------------DDGLPLKFSNWGADY-----RKKGILAPGENILGAALG-------------GE 204 (267)
T ss_pred ---------------------------CCCCeeeecCCCCCC-----CCceEEecCCCceeecCC-------------CC
Confidence 112457899999875 578999999999998875 57
Q ss_pred ceeeccccchhHHHHHHHHHHhhhCCC----CCHHHHHHHHHhccccCCCC
Q 004824 496 FNLMSGTSMATPHVAGVAGLLKAAHPD----WSPAAIRSALVTTASPLDNT 542 (728)
Q Consensus 496 y~~~sGTSmAaP~VAG~aALl~~~~p~----lsp~~ik~~L~~TA~~~~~~ 542 (728)
|..++|||||||||||++|||+|++|. ++|++||++|++||+++...
T Consensus 205 ~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 205 VVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred eEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 999999999999999999999999886 89999999999999998653
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=387.65 Aligned_cols=287 Identities=40% Similarity=0.550 Sum_probs=216.5
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCC----CCccCCCCCC
Q 004824 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNP----KLKVRMNSPR 180 (728)
Q Consensus 105 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~----~~~~~~~~~~ 180 (728)
|+||+|||||+||+++||+|.+.. +++.+++..++|......... ..........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999998541 134445555555433111000 0000112345
Q ss_pred CCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccCC
Q 004824 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSL 259 (728)
Q Consensus 181 d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 259 (728)
|..+|||||||+|+|+..+.. .+.|+||+|+|+.+|++...+ +...++++||+|+++++++|||||||..
T Consensus 60 ~~~~HGT~vAgiiag~~~n~~--------~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~- 130 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNVG--------TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSS- 130 (295)
T ss_pred CCCCcHHHHHHHHhcCCCccC--------ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC-
Confidence 688999999999999864422 238999999999999998544 7888999999999999999999999983
Q ss_pred CCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCcc--ccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCC
Q 004824 260 NGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTL--INGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGN 337 (728)
Q Consensus 260 ~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~ 337 (728)
.. ...+.+..++..+.++|+++|+||||+|...... +...+++|+||++....
T Consensus 131 -~~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------- 185 (295)
T cd07474 131 -VN-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------- 185 (295)
T ss_pred -CC-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------
Confidence 22 1345667778889999999999999998765543 55678999999853110
Q ss_pred CCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHH
Q 004824 338 SSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417 (728)
Q Consensus 338 ~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~ 417 (728)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCCCeEEEEeeeeEecccCCCccccccC-CCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCc
Q 004824 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSS-RGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNF 496 (728)
Q Consensus 418 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS-~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 496 (728)
.........|++ +|+....+ +||||+|||.+|++++... ...|
T Consensus 186 -----------------------~~~~~~~~~~~s~~~~~~~~~--~kpdv~apG~~i~~~~~~~-----------~~~~ 229 (295)
T cd07474 186 -----------------------VAEADTVGPSSSRGPPTSDSA--IKPDIVAPGVDIMSTAPGS-----------GTGY 229 (295)
T ss_pred -----------------------cCCCCceeccCCCCCCCCCCC--cCCCEECCcCceEeeccCC-----------CCce
Confidence 001123344444 55555544 9999999999999988753 2578
Q ss_pred eeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCcccc
Q 004824 497 NLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKA 571 (728)
Q Consensus 497 ~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~A 571 (728)
..++|||||||+|||++|||+|++|+|++++||++|++||++....+ ....++..+|+|+||+.+|
T Consensus 230 ~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~---------~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 230 ARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD---------GVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred EEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC---------CCcCChhccCcceeccccC
Confidence 99999999999999999999999999999999999999999886543 1222456899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=384.83 Aligned_cols=267 Identities=24% Similarity=0.337 Sum_probs=190.8
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCC-CCCCcccccccCCccCcccCCceeeeeeecccccccc-----CC-------CC
Q 004824 106 KGVIIGLVDTGIWPESQSFSDEGMAK-VPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIAN-----NP-------KL 172 (728)
Q Consensus 106 ~Gv~VgVIDtGid~~Hp~f~~~~~~~-~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~-----~~-------~~ 172 (728)
|+|+|||||||||++||+|.+.-... ......+....+.+|.. + +++++|...+... +. ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----c-ccCeeccCCcccccccccCcccccccccc
Confidence 68999999999999999998641100 00001122222222211 1 3344444321100 00 00
Q ss_pred ccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEE
Q 004824 173 KVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLS 252 (728)
Q Consensus 173 ~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN 252 (728)
+.+...+.+..+|||||||||+|...++ .| +.|+||+|+|+.+|++........++++||+||++.|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 1122345578999999999999986433 23 389999999999999875556778899999999999999999
Q ss_pred eccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc---cc--------cCCCceEEeccccccceeeeEEE
Q 004824 253 LSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT---LI--------NGAPWLLTVGAGTIDREFEGSLT 321 (728)
Q Consensus 253 ~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~ap~vitVgast~~~~~~~~~~ 321 (728)
||||. .... ....+..++..+.++|+++|+||||+|..... ++ ...+++|+||+.....
T Consensus 147 ~S~G~--~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~------- 216 (291)
T cd07483 147 MSFGK--SFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY------- 216 (291)
T ss_pred eCCCC--CCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC-------
Confidence 99997 2222 23456677778899999999999999864321 11 1245677777642110
Q ss_pred cCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCcccccc
Q 004824 322 LGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYI 401 (728)
Q Consensus 322 ~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 401 (728)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCC
Q 004824 402 RSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPI 481 (728)
Q Consensus 402 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 481 (728)
....++.||++|+ .+|||+|||.+|+++.+.
T Consensus 217 -----------------------------------------~~~~~~~~Sn~G~-------~~vdi~APG~~i~s~~~~- 247 (291)
T cd07483 217 -----------------------------------------ENNLVANFSNYGK-------KNVDVFAPGERIYSTTPD- 247 (291)
T ss_pred -----------------------------------------CcccccccCCCCC-------CceEEEeCCCCeEeccCc-
Confidence 1124689999997 357999999999998775
Q ss_pred CCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 482 SSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 482 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 248 ------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 248 ------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 58999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=373.46 Aligned_cols=234 Identities=30% Similarity=0.394 Sum_probs=190.7
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChh
Q 004824 108 VIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGT 187 (728)
Q Consensus 108 v~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 187 (728)
|+|||||||||++||+|.++- +..+++.. ....|..+|||
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~-------------~~~~~~~~HGT 40 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG-------------PGAPAPSAHGT 40 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC-------------CCCCCCCCCHH
Confidence 689999999999999997541 11111110 12456789999
Q ss_pred hHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC----CChHHHHHHHHHHHHCCCcEEEeccccCCCCCC
Q 004824 188 HTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG----VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIF 263 (728)
Q Consensus 188 hVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 263 (728)
||||||+|+.... .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||.. .
T Consensus 41 ~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~--~-- 105 (239)
T cd05561 41 AVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP--P-- 105 (239)
T ss_pred HHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC--C--
Confidence 9999999985321 6999999999999998642 6778899999999999999999999982 2
Q ss_pred ChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCe
Q 004824 264 LEDDAIAVATFAAMEKGVLVVASAGNDGPSY-WTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQ 342 (728)
Q Consensus 264 ~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~ 342 (728)
...+..++..+.++|++||+||||+|... ..++...+++|+||+..
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------- 152 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD------------------------------- 152 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeec-------------------------------
Confidence 34566777889999999999999999753 45677788999998832
Q ss_pred eeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHH
Q 004824 343 VSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYI 422 (728)
Q Consensus 343 ~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 422 (728)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccc
Q 004824 423 KKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGT 502 (728)
Q Consensus 423 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 502 (728)
..+.++.||++|+.. ||+|||.+|+++.+. +.|..++||
T Consensus 153 --------------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~~~~sGT 191 (239)
T cd05561 153 --------------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGYRYVSGT 191 (239)
T ss_pred --------------------CCCCccccCCCCCcc--------eEEccccceecccCC-------------CCEEEeCCH
Confidence 123568899999864 999999999997764 679999999
Q ss_pred cchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCC
Q 004824 503 SMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAG 564 (728)
Q Consensus 503 SmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G 564 (728)
|||||||||++|||+|++| +++++||++|++||+++... ..+..||||
T Consensus 192 S~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~-------------~~d~~~G~G 239 (239)
T cd05561 192 SFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP-------------GRDPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC-------------CcCCCcCCC
Confidence 9999999999999999999 99999999999999987533 244588988
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=372.20 Aligned_cols=247 Identities=32% Similarity=0.380 Sum_probs=194.2
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCC
Q 004824 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSG 184 (728)
Q Consensus 105 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~g 184 (728)
|+||+|||||+||+++||+|.+. |+..... ++...+.+.+. ......+.|..+
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~~~~~~~~d~--------~~~~~~~~d~~~ 53 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SADHDYNWFDP--------VGNTPLPYDDNG 53 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------CcccccccccC--------CCCCCCCCCCCC
Confidence 89999999999999999999864 1111000 00000001100 001234567889
Q ss_pred ChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH------------CCCcEEE
Q 004824 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ------------DGVDVLS 252 (728)
Q Consensus 185 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dVIN 252 (728)
|||||||||+|..... ...||||+|+|+.+|++...++...+++++++++++ .|++|||
T Consensus 54 HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin 124 (264)
T cd07481 54 HGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVIN 124 (264)
T ss_pred chhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEE
Confidence 9999999999875322 127999999999999998877888899999999985 7899999
Q ss_pred eccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc---cccCCCceEEeccccccceeeeEEEcCCCcEEe
Q 004824 253 LSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT---LINGAPWLLTVGAGTIDREFEGSLTLGNGVQIN 329 (728)
Q Consensus 253 ~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~ 329 (728)
||||.. .. ....+..++..+.++|++||+||||++..... .+...|++|+||+.+
T Consensus 125 ~S~G~~--~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~------------------ 182 (264)
T cd07481 125 NSWGGP--SG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD------------------ 182 (264)
T ss_pred eCCCcC--CC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC------------------
Confidence 999993 22 23445556667888999999999999865432 556788999999842
Q ss_pred eeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEE
Q 004824 330 FKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAF 409 (728)
Q Consensus 330 g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~ 409 (728)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcccccc
Q 004824 410 INVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQS 489 (728)
Q Consensus 410 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 489 (728)
..+.++.||++||....+ +||||+|||.+|+++++.
T Consensus 183 ---------------------------------~~~~~~~~S~~g~~~~~~--~~~dv~ApG~~i~s~~~~--------- 218 (264)
T cd07481 183 ---------------------------------RNDVLADFSSRGPSTYGR--IKPDISAPGVNIRSAVPG--------- 218 (264)
T ss_pred ---------------------------------CCCCCccccCCCCCCCCC--cCceEEECCCCeEEecCC---------
Confidence 223678999999998765 999999999999999875
Q ss_pred CcccCCceeeccccchhHHHHHHHHHHhhhCCC--CCHHHHHHHHHhccc
Q 004824 490 GLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPD--WSPAAIRSALVTTAS 537 (728)
Q Consensus 490 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~--lsp~~ik~~L~~TA~ 537 (728)
+.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 219 ----~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 ----GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred ----CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-44 Score=371.87 Aligned_cols=243 Identities=31% Similarity=0.388 Sum_probs=195.4
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCCh
Q 004824 107 GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHG 186 (728)
Q Consensus 107 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 186 (728)
||+||||||||+++||+|.... ..++.++++.++|.+... ....|..+||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~~----------~~~~~~~~HG 50 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNSN----------NTNYTDDDHG 50 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCCC----------CCCCCCCCch
Confidence 7999999999999999995210 013456777777765421 1135788999
Q ss_pred hhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC---CChHHHHHHHHHHHHCCCcEEEeccccCCCCCC
Q 004824 187 THTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG---VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIF 263 (728)
Q Consensus 187 ThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 263 (728)
|||||+|+|+.. +.+.||||+|+|+.+|+..... ....+++.|++||.+.|++|||||||.. ...
T Consensus 51 T~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~--~~~ 118 (261)
T cd07493 51 TAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYT--TFD 118 (261)
T ss_pred hhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcC--CCC
Confidence 999999999752 2248999999999999876433 3456788999999999999999999984 221
Q ss_pred C------------hhhHHHHHHHHHHhCCcEEEEecCCCCCC---CCccccCCCceEEeccccccceeeeEEEcCCCcEE
Q 004824 264 L------------EDDAIAVATFAAMEKGVLVVASAGNDGPS---YWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQI 328 (728)
Q Consensus 264 ~------------~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~ 328 (728)
. ....+..++..+.++|++||+||||+|.. ....+...+++|+|||..
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~----------------- 181 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD----------------- 181 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec-----------------
Confidence 1 12356677888899999999999999977 345667789999999832
Q ss_pred eeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEE
Q 004824 329 NFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAA 408 (728)
Q Consensus 329 ~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~ 408 (728)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccc
Q 004824 409 FINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQ 488 (728)
Q Consensus 409 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 488 (728)
..+.++.||++||+.+.+ +||||+|||.++++....
T Consensus 182 ----------------------------------~~~~~~~~S~~G~~~~~~--~~pdi~a~G~~~~~~~~~-------- 217 (261)
T cd07493 182 ----------------------------------ANGNKASFSSIGPTADGR--LKPDVMALGTGIYVINGD-------- 217 (261)
T ss_pred ----------------------------------cCCCCCccCCcCCCCCCC--cCCceEecCCCeEEEcCC--------
Confidence 122568999999998765 999999999999985443
Q ss_pred cCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 489 SGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 489 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
+.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 -----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 -----GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred -----CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=368.57 Aligned_cols=263 Identities=30% Similarity=0.366 Sum_probs=200.5
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCC
Q 004824 97 GAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRM 176 (728)
Q Consensus 97 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 176 (728)
.+|..+++|+||+|+|||||||++||+|.+..... .+. .....+.+... . ....
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~~------~~~~~~~~~~~------~-~~~~ 54 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GYD------PAVNGYNFVPN------V-GDID 54 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Ccc------cccCCcccccc------c-CCcC
Confidence 37999999999999999999999999999751100 000 00000001000 0 0011
Q ss_pred CCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEecc
Q 004824 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSL 255 (728)
Q Consensus 177 ~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~Sl 255 (728)
....|..+|||||||||+|+..+.....|++ .+.|+||+|+|+.+|++...+ +....++++|+||++.|++||||||
T Consensus 55 ~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~ 132 (273)
T cd07485 55 NDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSW 132 (273)
T ss_pred CCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecC
Confidence 3455778999999999999864432222222 336799999999999998754 7788899999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHhC-------CcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEE
Q 004824 256 GLSLNGIFLEDDAIAVATFAAMEK-------GVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQI 328 (728)
Q Consensus 256 G~~~~~~~~~~~~~~~~~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~ 328 (728)
|. .....+...+..++..+.++ |++||+||||++......+...|++|+||+.+
T Consensus 133 g~--~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~----------------- 193 (273)
T cd07485 133 GG--TGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALD----------------- 193 (273)
T ss_pred CC--CCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEecc-----------------
Confidence 98 33233455667777788877 99999999999988777788889999999843
Q ss_pred eeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEE
Q 004824 329 NFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAA 408 (728)
Q Consensus 329 ~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~ 408 (728)
T Consensus 194 -------------------------------------------------------------------------------- 193 (273)
T cd07485 194 -------------------------------------------------------------------------------- 193 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCC-ceeeccCCCCCcccc
Q 004824 409 FINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGS-LVLASWSPISSVAEV 487 (728)
Q Consensus 409 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~ 487 (728)
..+.++.||++|+.. ||+|||. .|+++++....
T Consensus 194 ----------------------------------~~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~---- 227 (273)
T cd07485 194 ----------------------------------TNDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG---- 227 (273)
T ss_pred ----------------------------------CCCCcCccccCCCce--------EEEeCCCCccccccccccC----
Confidence 123567999999865 9999999 88888764311
Q ss_pred ccCcccCCceeeccccchhHHHHHHHHHHhhhCCC-CCHHHHHHHHHhc
Q 004824 488 QSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPD-WSPAAIRSALVTT 535 (728)
Q Consensus 488 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~-lsp~~ik~~L~~T 535 (728)
...+.|..++|||||||+|||++|||+|++|. |+|+|||++|++|
T Consensus 228 ---~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 228 ---DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ---CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 11257899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=376.42 Aligned_cols=220 Identities=28% Similarity=0.344 Sum_probs=164.7
Q ss_pred CCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC---CChHHHHHHHHHHHHCCCcEEEeccc
Q 004824 180 RDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG---VYSSDVVAAIDQALQDGVDVLSLSLG 256 (728)
Q Consensus 180 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG 256 (728)
.|+.+|||||||||||+..++. .+.|+||+|+|+.+|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~~--------~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEEP--------ERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCCC--------ceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 4678999999999999853322 238999999999999987532 23457899999999999999999999
Q ss_pred cCCCCCCChhhHHHHHHHH-HHhCCcEEEEecCCCCCCCCcccc---CCCceEEeccccccceeeeEEEcCCCcEEeeee
Q 004824 257 LSLNGIFLEDDAIAVATFA-AMEKGVLVVASAGNDGPSYWTLIN---GAPWLLTVGAGTIDREFEGSLTLGNGVQINFKS 332 (728)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~-a~~~Gi~vV~AAGN~g~~~~~~~~---~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s 332 (728)
.. ........+...+.+ +.++|+++|+||||+|+...++.. .++++|+|||..........
T Consensus 254 ~~--~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------- 318 (412)
T cd04857 254 EA--THWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------- 318 (412)
T ss_pred cC--CCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc-------------
Confidence 84 221112223334433 457999999999999987665432 46899999995321100000
Q ss_pred cCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeec
Q 004824 333 LYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINV 412 (728)
Q Consensus 333 ~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~ 412 (728)
|.+
T Consensus 319 ----------y~~------------------------------------------------------------------- 321 (412)
T cd04857 319 ----------YSL------------------------------------------------------------------- 321 (412)
T ss_pred ----------ccc-------------------------------------------------------------------
Confidence 000
Q ss_pred ccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcc
Q 004824 413 NDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLL 492 (728)
Q Consensus 413 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 492 (728)
.....+.++.||||||+.+++ +||||+|||..|.+.-...
T Consensus 322 ---------------------------~~~~~~~~~~fSSrGP~~dG~--~~pdI~APG~~I~s~p~~~----------- 361 (412)
T cd04857 322 ---------------------------REKLPGNQYTWSSRGPTADGA--LGVSISAPGGAIASVPNWT----------- 361 (412)
T ss_pred ---------------------------ccccCCccccccccCCcccCC--cCceEEeCCCcEEEcccCC-----------
Confidence 011234689999999999977 9999999999998752211
Q ss_pred cCCceeeccccchhHHHHHHHHHHhh----hCCCCCHHHHHHHHHhccccC
Q 004824 493 YSNFNLMSGTSMATPHVAGVAGLLKA----AHPDWSPAAIRSALVTTASPL 539 (728)
Q Consensus 493 ~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~lsp~~ik~~L~~TA~~~ 539 (728)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 ~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 15789999999999999999999975 478999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=363.94 Aligned_cols=257 Identities=33% Similarity=0.471 Sum_probs=202.7
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCC
Q 004824 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSG 184 (728)
Q Consensus 105 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~g 184 (728)
|+||+|+|||+||+++||+|.+.... . +.+.... .......|..+
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~-----------------------~~~~~~~--------~~~~~~~d~~~ 45 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----F-----------------------ADFVNTV--------NGRTTPYDDNG 45 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----c-----------------------ccccccc--------cCCCCCCCCCC
Confidence 89999999999999999999864110 0 0111000 01234567789
Q ss_pred ChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC----CCcEEEeccccCC
Q 004824 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD----GVDVLSLSLGLSL 259 (728)
Q Consensus 185 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~ 259 (728)
|||||||+|+|+..+. .+.+.|+||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||..
T Consensus 46 HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~- 117 (264)
T cd07487 46 HGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAP- 117 (264)
T ss_pred chHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCC-
Confidence 9999999999986432 12248999999999999998876 6778999999999998 999999999984
Q ss_pred CCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC--ccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCC
Q 004824 260 NGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW--TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGN 337 (728)
Q Consensus 260 ~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~ 337 (728)
.........+..++.++.++|++||+||||++.... ..+...+++|+||+...+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------------- 175 (264)
T cd07487 118 PDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------------- 175 (264)
T ss_pred CCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------------
Confidence 222456677888888999999999999999998765 55667899999998542211
Q ss_pred CCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHH
Q 004824 338 SSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417 (728)
Q Consensus 338 ~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~ 417 (728)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCce
Q 004824 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFN 497 (728)
Q Consensus 418 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 497 (728)
....++.||++||+.+.+ +||||+|||.+|+++.+.... ......+.|.
T Consensus 176 -------------------------~~~~~~~~s~~G~~~~~~--~~~di~apG~~i~~~~~~~~~----~~~~~~~~~~ 224 (264)
T cd07487 176 -------------------------HDDGISYFSSRGPTGDGR--IKPDVVAPGENIVSCRSPGGN----PGAGVGSGYF 224 (264)
T ss_pred -------------------------CCccccccccCCCCCCCC--cCCCEEccccceEeccccccc----cCCCCCCceE
Confidence 012478999999998866 999999999999998654211 0111236789
Q ss_pred eeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 498 LMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 498 ~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
.++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 225 ~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 225 EMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred eccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=356.43 Aligned_cols=232 Identities=34% Similarity=0.460 Sum_probs=194.0
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCC
Q 004824 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMN 177 (728)
Q Consensus 98 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 177 (728)
+|..+++|+||+|||||+||+++||+|.++ +...+.+... .
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------~ 57 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------D 57 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC------------C
Confidence 677789999999999999999999999754 1222222221 1
Q ss_pred CCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC-----CCcEE
Q 004824 178 SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD-----GVDVL 251 (728)
Q Consensus 178 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~dVI 251 (728)
...|..+|||||||||+++. .||||+|+|+.+|+++..+ ...++++++|+|+++. +++||
T Consensus 58 ~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ii 123 (255)
T cd04077 58 PDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVA 123 (255)
T ss_pred CCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEE
Confidence 25678899999999999863 6999999999999998875 6778899999999987 48999
Q ss_pred EeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeeEEEcCCCcEEee
Q 004824 252 SLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY-WTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINF 330 (728)
Q Consensus 252 N~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g 330 (728)
|||||.. . ...+..++..+.++|+++|+||||+|... ...+...|++|+||+.+.
T Consensus 124 n~S~g~~--~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~------------------ 179 (255)
T cd04077 124 NMSLGGG--A----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS------------------ 179 (255)
T ss_pred EeCCCCC--C----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC------------------
Confidence 9999993 3 45566777788999999999999999765 455677899999998431
Q ss_pred eecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEe
Q 004824 331 KSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFI 410 (728)
Q Consensus 331 ~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i 410 (728)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccC
Q 004824 411 NVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSG 490 (728)
Q Consensus 411 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 490 (728)
.+.++.||++||.. ||+|||.+|.++....
T Consensus 180 ---------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~--------- 209 (255)
T cd04077 180 ---------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGS--------- 209 (255)
T ss_pred ---------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCC---------
Confidence 22468999999875 9999999999987742
Q ss_pred cccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhcccc
Q 004824 491 LLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASP 538 (728)
Q Consensus 491 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~ 538 (728)
.+.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 210 --~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 210 --DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred --CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 2688999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=366.39 Aligned_cols=263 Identities=27% Similarity=0.241 Sum_probs=185.2
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChh
Q 004824 108 VIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGT 187 (728)
Q Consensus 108 v~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 187 (728)
.+|||||||||.+||+|.+. +.....+... .....|..||||
T Consensus 1 p~VaviDtGi~~~hp~l~~~---------------------------~~~~~~~~~~-----------~~~~~d~~gHGT 42 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPA---------------------------LAEDDLDSDE-----------PGWTADDLGHGT 42 (291)
T ss_pred CEEEEecCCCCCCChhhhhh---------------------------hccccccccC-----------CCCcCCCCCChH
Confidence 37999999999999999854 1111111100 011568899999
Q ss_pred hHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-----CChHHHHHHHHHHHHCC---CcEEEeccccCC
Q 004824 188 HTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-----VYSSDVVAAIDQALQDG---VDVLSLSLGLSL 259 (728)
Q Consensus 188 hVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIN~SlG~~~ 259 (728)
||||||++..... ....|+||+|+|+.+|++...| ....++++||+|+++.+ ++|||||||..
T Consensus 43 ~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~- 113 (291)
T cd04847 43 AVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSP- 113 (291)
T ss_pred HHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCC-
Confidence 9999999764331 1237999999999999998864 45678899999999853 49999999994
Q ss_pred CCCCC--hhhHHHHHHH-HHHhCCcEEEEecCCCCCCCCc------------cccCCCceEEeccccccceeeeEEEcCC
Q 004824 260 NGIFL--EDDAIAVATF-AAMEKGVLVVASAGNDGPSYWT------------LINGAPWLLTVGAGTIDREFEGSLTLGN 324 (728)
Q Consensus 260 ~~~~~--~~~~~~~~~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~ap~vitVgast~~~~~~~~~~~~~ 324 (728)
.... ....+..++. .+.++|++||+||||++..... .+..++++|+|||.+.+......
T Consensus 114 -~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~----- 187 (291)
T cd04847 114 -LPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR----- 187 (291)
T ss_pred -CCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc-----
Confidence 2211 1123444443 3568999999999999987543 24567899999996543321000
Q ss_pred CcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccC
Q 004824 325 GVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSS 404 (728)
Q Consensus 325 g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 404 (728)
+.+
T Consensus 188 -------s~~---------------------------------------------------------------------- 190 (291)
T cd04847 188 -------ARY---------------------------------------------------------------------- 190 (291)
T ss_pred -------ccc----------------------------------------------------------------------
Confidence 000
Q ss_pred ccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCc
Q 004824 405 FPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSV 484 (728)
Q Consensus 405 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 484 (728)
+.......+.||+|||..... +||||+|||++|.+........
T Consensus 191 -----------------------------------~~~~~~~~~~fs~~Gp~~~~~--~KPDl~apG~~i~~~~~~~~~~ 233 (291)
T cd04847 191 -----------------------------------SAVGPAPAGATTSSGPGSPGP--IKPDVVAFGGNLAYDPSGNAAD 233 (291)
T ss_pred -----------------------------------cccccccCCCccccCCCCCCC--cCCcEEeeCCceeecCCCCCcc
Confidence 000011233499999999866 9999999999998754421100
Q ss_pred -----cccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 485 -----AEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 485 -----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
...........|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 234 GDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 00001112368999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=355.83 Aligned_cols=241 Identities=36% Similarity=0.494 Sum_probs=200.3
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
...+|..+ +|+||+|||||+||+++||+|.+. ++...+++.+..
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~~--------- 61 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDND--------- 61 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCCC---------
Confidence 36689888 899999999999999999998432 122223332221
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 253 (728)
..+.|..+|||||||||++...+.. | +.|+||+|+|+.+|+++..+ +...+++++|+++++.|++||||
T Consensus 62 --~~~~d~~~HGT~vagii~~~~~~~~---~-----~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~ 131 (260)
T cd07484 62 --SDAMDDNGHGTHVAGIIAAATNNGT---G-----VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINL 131 (260)
T ss_pred --CCCCCCCCcHHHHHHHHhCccCCCC---c-----eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 2355788999999999998754322 2 38999999999999998765 77888999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeec
Q 004824 254 SLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSL 333 (728)
Q Consensus 254 SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~ 333 (728)
|||.. . ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 132 S~g~~--~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~--------------------- 185 (260)
T cd07484 132 SLGGG--L---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ--------------------- 185 (260)
T ss_pred cCCCC--C---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC---------------------
Confidence 99993 2 445667777788899999999999999988888889999999998431
Q ss_pred CCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecc
Q 004824 334 YPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVN 413 (728)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~ 413 (728)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCccc
Q 004824 414 DGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLY 493 (728)
Q Consensus 414 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 493 (728)
.+..+.||++|+.. |++|||.+|++..+.
T Consensus 186 ------------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~------------- 214 (260)
T cd07484 186 ------------------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPD------------- 214 (260)
T ss_pred ------------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCC-------------
Confidence 22567899999754 999999999988765
Q ss_pred CCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccC
Q 004824 494 SNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPL 539 (728)
Q Consensus 494 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~ 539 (728)
+.|..++|||||||+|||++||+++++| |++.+||++|++||+++
T Consensus 215 ~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 5799999999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=358.06 Aligned_cols=208 Identities=32% Similarity=0.395 Sum_probs=167.6
Q ss_pred CCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHH----------HC
Q 004824 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQAL----------QD 246 (728)
Q Consensus 177 ~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~----------~~ 246 (728)
....+..+|||||||||+|...++ .|+ .||||+|+|+.+|+++..+.+.+++++|++|++ .+
T Consensus 65 ~~~~~~~~HGT~vAgiiaa~~~~~---~~~-----~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~ 136 (285)
T cd07496 65 SGVSPSSWHGTHVAGTIAAVTNNG---VGV-----AGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPN 136 (285)
T ss_pred CCCCCCCCCHHHHHHHHhCcCCCC---CCc-----eeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCC
Confidence 345567899999999999986532 233 799999999999999887778899999999998 45
Q ss_pred CCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeeEEEcCCC
Q 004824 247 GVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY-WTLINGAPWLLTVGAGTIDREFEGSLTLGNG 325 (728)
Q Consensus 247 g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~ap~vitVgast~~~~~~~~~~~~~g 325 (728)
+++|||||||.. ... ...+..++..+.++|++||+||||++... ...+...+++|+||+.+
T Consensus 137 ~~~Iin~S~G~~--~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------- 198 (285)
T cd07496 137 PAKVINLSLGGD--GAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATD-------------- 198 (285)
T ss_pred CCeEEEeCCCCC--CCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccC--------------
Confidence 789999999983 221 45667778888999999999999999876 56677889999999843
Q ss_pred cEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCc
Q 004824 326 VQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSF 405 (728)
Q Consensus 326 ~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 405 (728)
T Consensus 199 -------------------------------------------------------------------------------- 198 (285)
T cd07496 199 -------------------------------------------------------------------------------- 198 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcc
Q 004824 406 PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVA 485 (728)
Q Consensus 406 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 485 (728)
..+.++.||++|+.. ||+|||.+|.+.........
T Consensus 199 -------------------------------------~~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~ 233 (285)
T cd07496 199 -------------------------------------LRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPD 233 (285)
T ss_pred -------------------------------------CCCCcccccCCCCCC--------CEEeCCCCccccCCCCcccc
Confidence 123568999999865 99999999998776431110
Q ss_pred --ccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhc
Q 004824 486 --EVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTT 535 (728)
Q Consensus 486 --~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~T 535 (728)
..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 234 ~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 234 SNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 00111123578999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=352.26 Aligned_cols=253 Identities=34% Similarity=0.393 Sum_probs=185.5
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCCh
Q 004824 107 GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHG 186 (728)
Q Consensus 107 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 186 (728)
||+|||||+|||++||+|.+. +....+|..+. ..+.....|..+||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~-------~~~~~~~~d~~~HG 46 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR-------RISATEVFDAGGHG 46 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC-------CCCCCCCCCCCCcH
Confidence 799999999999999999764 11111221110 01123455778999
Q ss_pred hhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEEeccccCCCCCCChh
Q 004824 187 THTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLED 266 (728)
Q Consensus 187 ThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~ 266 (728)
|||||||+|+..+ +...|+||+|+|+.+|++...++...+++++|+|+++.+++|||||||.. ... .
T Consensus 47 T~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~--~~~--~ 113 (254)
T cd07490 47 THVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGT--YYS--E 113 (254)
T ss_pred HHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcC--CCC--C
Confidence 9999999998641 12379999999999999988778889999999999999999999999984 222 4
Q ss_pred hHHHHHHHHHHh-CCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeE
Q 004824 267 DAIAVATFAAME-KGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSL 345 (728)
Q Consensus 267 ~~~~~~~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~l 345 (728)
+.+..++..+.+ +|++||+||||+|......+...+++|+||+.+.+...... .
T Consensus 114 ~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~---------------s---------- 168 (254)
T cd07490 114 DPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWF---------------S---------- 168 (254)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCc---------------c----------
Confidence 445545444443 69999999999998877778888999999996533210000 0
Q ss_pred EEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHhC
Q 004824 346 AFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKC 425 (728)
Q Consensus 346 v~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 425 (728)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccch
Q 004824 426 DNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMA 505 (728)
Q Consensus 426 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 505 (728)
..........+.+|... ....||||+|||.+|+++.... ...+.|..++|||||
T Consensus 169 ----------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~A 222 (254)
T cd07490 169 ----------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMA 222 (254)
T ss_pred ----------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHH
Confidence 00001122223333322 1348999999999999865321 112679999999999
Q ss_pred hHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 506 TPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 506 aP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
||+|||++|||+|++|+|++.+||++|++||+
T Consensus 223 aP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 223 APHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=357.33 Aligned_cols=277 Identities=31% Similarity=0.337 Sum_probs=200.1
Q ss_pred CCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCC
Q 004824 101 ASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPR 180 (728)
Q Consensus 101 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 180 (728)
++++|+||+|||||+|||++||+|.+... .+.. ..++++.....+.. ...
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~--------------~~~ 51 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD--------------TKD 51 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC--------------CCC
Confidence 58899999999999999999999986421 0000 12334443333221 122
Q ss_pred CCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC--CChHHHHHHHHHHHHCCCcEEEeccccC
Q 004824 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG--VYSSDVVAAIDQALQDGVDVLSLSLGLS 258 (728)
Q Consensus 181 d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 258 (728)
|..+|||||||||+|+..+..... .+.|+||+|+|+.+|++...+ ....++..+++++.+.+++|||||||..
T Consensus 52 d~~~HGT~vAgiia~~~~~~~~~~-----~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~ 126 (293)
T cd04842 52 DVDGHGTHVAGIIAGKGNDSSSIS-----LYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSP 126 (293)
T ss_pred CCCCCcchhheeeccCCcCCCccc-----ccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCC
Confidence 789999999999999875543211 238999999999999998765 5666788999999999999999999993
Q ss_pred CCCCCChhhHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeeEEEcCCCcEEeeeec
Q 004824 259 LNGIFLEDDAIAVATFAAM-E-KGVLVVASAGNDGPSYW---TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSL 333 (728)
Q Consensus 259 ~~~~~~~~~~~~~~~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~ 333 (728)
... .......++.++. + +|++||+||||++.... ..+...+++|+|||.+.+......
T Consensus 127 --~~~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~-------------- 189 (293)
T cd04842 127 --VNN-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE-------------- 189 (293)
T ss_pred --Ccc-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc--------------
Confidence 321 1122233333332 3 89999999999997765 566788999999996543321000
Q ss_pred CCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecc
Q 004824 334 YPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVN 413 (728)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~ 413 (728)
.|.
T Consensus 190 ----------------~~~------------------------------------------------------------- 192 (293)
T cd04842 190 ----------------GGL------------------------------------------------------------- 192 (293)
T ss_pred ----------------ccc-------------------------------------------------------------
Confidence 000
Q ss_pred cHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCccc
Q 004824 414 DGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLY 493 (728)
Q Consensus 414 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 493 (728)
........++.||++||...++ +||||+|||.+|+++..... .......
T Consensus 193 -------------------------~~~~~~~~~~~~S~~G~~~~~~--~~pdv~ApG~~i~~~~~~~~----~~~~~~~ 241 (293)
T cd04842 193 -------------------------GQSDNSDTVASFSSRGPTYDGR--IKPDLVAPGTGILSARSGGG----GIGDTSD 241 (293)
T ss_pred -------------------------cccCCCCccccccCcCCCCCCC--cCCCEECCCCCeEeccCCCC----CCCCCCh
Confidence 0012234689999999998866 99999999999999875420 0011123
Q ss_pred CCceeeccccchhHHHHHHHHHHhhhC-----C---CCCHHHHHHHHHhccc
Q 004824 494 SNFNLMSGTSMATPHVAGVAGLLKAAH-----P---DWSPAAIRSALVTTAS 537 (728)
Q Consensus 494 ~~y~~~sGTSmAaP~VAG~aALl~~~~-----p---~lsp~~ik~~L~~TA~ 537 (728)
..|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 242 ~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 242 SAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred hheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 678899999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=355.67 Aligned_cols=265 Identities=30% Similarity=0.375 Sum_probs=184.6
Q ss_pred CCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCC
Q 004824 100 PASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSP 179 (728)
Q Consensus 100 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 179 (728)
..+++|+||+|||||+|||++||+|.+.. +..++|.+. ...
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~~------------~~~ 42 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVGG------------EDV 42 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCCC------------CCC
Confidence 45789999999999999999999998641 111222211 124
Q ss_pred CCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccC
Q 004824 180 RDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLS 258 (728)
Q Consensus 180 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 258 (728)
.|..+|||||||||+|+..+ +...||||+|+|+.+|++...+ ....++++||+||++.|++|||||||..
T Consensus 43 ~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~ 113 (297)
T cd07480 43 QDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGAD 113 (297)
T ss_pred CCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCC
Confidence 57889999999999998643 1236999999999999997654 6777899999999999999999999983
Q ss_pred CC---------CCCChhhHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCccc-----cCCCceEEecc
Q 004824 259 LN---------GIFLEDDAIAVATFAA---------------MEKGVLVVASAGNDGPSYWTLI-----NGAPWLLTVGA 309 (728)
Q Consensus 259 ~~---------~~~~~~~~~~~~~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~ap~vitVga 309 (728)
. ........+......+ .++|++||+||||++....... ...+++++|++
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~ 192 (297)
T cd07480 114 -FPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAA 192 (297)
T ss_pred -CcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEE
Confidence 1 0111122222222233 6799999999999986543221 11223333333
Q ss_pred ccccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEE
Q 004824 310 GTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAV 389 (728)
Q Consensus 310 st~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i 389 (728)
..
T Consensus 193 V~------------------------------------------------------------------------------ 194 (297)
T cd07480 193 VG------------------------------------------------------------------------------ 194 (297)
T ss_pred EC------------------------------------------------------------------------------
Confidence 11
Q ss_pred EecCCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEe
Q 004824 390 FISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILA 469 (728)
Q Consensus 390 ~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~A 469 (728)
..+....|+++.+... .||||+|
T Consensus 195 -----------------------------------------------------~~~~~~~~~~~~~~~~----~~~dv~A 217 (297)
T cd07480 195 -----------------------------------------------------ALGRTGNFSAVANFSN----GEVDIAA 217 (297)
T ss_pred -----------------------------------------------------CCCCCCCccccCCCCC----CceEEEe
Confidence 0112223333333221 5789999
Q ss_pred CCCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccC
Q 004824 470 PGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDA 549 (728)
Q Consensus 470 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~ 549 (728)
||.+|+++.+. +.|..++|||||||+|||++|||+|++|.+++.+++.+|+.......... .
T Consensus 218 pG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~-~---- 279 (297)
T cd07480 218 PGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQ-F---- 279 (297)
T ss_pred CCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCC-C----
Confidence 99999998875 68999999999999999999999999999999888888874433211100 0
Q ss_pred CCCCCCCCCCccCCCccCcc
Q 004824 550 SNNNFPASPLDMGAGHINPN 569 (728)
Q Consensus 550 ~~~~~~~~~~~~G~G~in~~ 569 (728)
.....+.++|+|++++.
T Consensus 280 ---~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 280 ---APGLDLPDRGVGLGLAP 296 (297)
T ss_pred ---CCCCChhhcCCceeecC
Confidence 12235568999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=355.80 Aligned_cols=253 Identities=28% Similarity=0.381 Sum_probs=182.5
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
...+|+++++|+||+||||||||+..|| |.+.++. + ++ .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCCC----------
Confidence 4679999999999999999999999998 7643110 0 00 00000
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEEec
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLS 254 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S 254 (728)
......|..|||||||+++ .||||+|+|+.+|+++. ...++++||+||++++++|||||
T Consensus 53 ~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~S 111 (298)
T cd07494 53 ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNS 111 (298)
T ss_pred CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEee
Confidence 0123567889999999875 59999999999999864 56778999999999999999999
Q ss_pred cccCCCCCC---------ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCC
Q 004824 255 LGLSLNGIF---------LEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNG 325 (728)
Q Consensus 255 lG~~~~~~~---------~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g 325 (728)
||.. ...+ .....+..++..|.++|++||+||||++. .++...|++|+||+++.+.. +
T Consensus 112 lG~~-~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g 178 (298)
T cd07494 112 WGYD-LRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------G 178 (298)
T ss_pred cccC-CCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------C
Confidence 9984 1111 12345777888899999999999999974 46888999999999643321 0
Q ss_pred cEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCc
Q 004824 326 VQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSF 405 (728)
Q Consensus 326 ~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 405 (728)
..
T Consensus 179 ~~------------------------------------------------------------------------------ 180 (298)
T cd07494 179 AR------------------------------------------------------------------------------ 180 (298)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred cEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcE----------------Ee
Q 004824 406 PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDI----------------LA 469 (728)
Q Consensus 406 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI----------------~A 469 (728)
......+.|++. ... +..|||+ +|
T Consensus 181 ------------------------------------~~~~~~~~~~s~--~~~--g~~~pd~~~~~g~~~~~~~~~~~~A 220 (298)
T cd07494 181 ------------------------------------RASSYASGFRSK--IYP--GRQVPDVCGLVGMLPHAAYLMLPVP 220 (298)
T ss_pred ------------------------------------cccccccCcccc--cCC--CCccCccccccCcCCcccccccccC
Confidence 000001122221 111 2267776 47
Q ss_pred CCCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCC
Q 004824 470 PGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDN 541 (728)
Q Consensus 470 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~ 541 (728)
||..|.++..... ......+.|..++|||||||||||++|||+|++|.|++++||.+|++||+++..
T Consensus 221 PG~~i~~~~~~~~-----~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 221 PGSQLDRSCAAFP-----DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred CCcceeccccCCC-----CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 9999876553210 001113679999999999999999999999999999999999999999997743
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=345.24 Aligned_cols=240 Identities=31% Similarity=0.408 Sum_probs=189.2
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChh
Q 004824 108 VIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGT 187 (728)
Q Consensus 108 v~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 187 (728)
|+|||||+||+++||+|.+.. +++..+.+... .....|..+|||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~-----------~~~~~~~~~HGT 44 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN-----------NDPTSDIDGHGT 44 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC-----------CCCCCCCCCCHH
Confidence 689999999999999998630 01111111111 013467889999
Q ss_pred hHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccCCCCCCChh
Q 004824 188 HTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLED 266 (728)
Q Consensus 188 hVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~ 266 (728)
||||||+|+..+.. + +.|+||+|+|+.+|++...+ +...++.++|+|+++.+++|||||||.. .......
T Consensus 45 ~vAgiiag~~~~~~---~-----~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~-~~~~~~~ 115 (242)
T cd07498 45 ACAGVAAAVGNNGL---G-----VAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGS-DSTESIS 115 (242)
T ss_pred HHHHHHHhccCCCc---e-----eEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCC-CCCchHH
Confidence 99999999864322 2 38999999999999998764 6788899999999999999999999984 3333456
Q ss_pred hHHHHHHHHHHh-CCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeE
Q 004824 267 DAIAVATFAAME-KGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSL 345 (728)
Q Consensus 267 ~~~~~~~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~l 345 (728)
..+..++..+.. +|+++|+||||+|......+...+++|+||+.+.
T Consensus 116 ~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~--------------------------------- 162 (242)
T cd07498 116 SAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS--------------------------------- 162 (242)
T ss_pred HHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC---------------------------------
Confidence 677777778888 9999999999999887767788999999998431
Q ss_pred EEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHhC
Q 004824 346 AFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKC 425 (728)
Q Consensus 346 v~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 425 (728)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccch
Q 004824 426 DNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMA 505 (728)
Q Consensus 426 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 505 (728)
.+.+++||++||.. |++|||.++.......... .....+.|..++|||||
T Consensus 163 ------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~A 212 (242)
T cd07498 163 ------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFA 212 (242)
T ss_pred ------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHH
Confidence 23568999999865 9999999998875432111 11123678899999999
Q ss_pred hHHHHHHHHHHhhhCCCCCHHHHHHHHHhc
Q 004824 506 TPHVAGVAGLLKAAHPDWSPAAIRSALVTT 535 (728)
Q Consensus 506 aP~VAG~aALl~~~~p~lsp~~ik~~L~~T 535 (728)
||+|||++|||+|++|+|++++||++|++|
T Consensus 213 ap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 213 SPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=346.35 Aligned_cols=249 Identities=31% Similarity=0.429 Sum_probs=190.6
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccc---cccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCC
Q 004824 106 KGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGE---CMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDG 182 (728)
Q Consensus 106 ~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~---~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~ 182 (728)
+||+|||||||||++||+|.++ .|... +..+.+.. .+..+ ... .+++.. .+...+.|.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~---~~~~~-~~~---~~~~~~-----~~~~~~~d~ 62 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDD---GNGYV-DDI---YGWNFV-----NNDNDPMDD 62 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccC---CCCcc-cCC---Cccccc-----CCCCCCCCC
Confidence 6899999999999999999974 23211 11111100 00000 000 011110 122456788
Q ss_pred CCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccCCCC
Q 004824 183 SGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSLNG 261 (728)
Q Consensus 183 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 261 (728)
.+|||||||||+|+..+... +.|+||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||.. .
T Consensus 63 ~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~--~ 132 (259)
T cd07473 63 NGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGG--G 132 (259)
T ss_pred CCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCC--C
Confidence 99999999999998644322 37999999999999998876 7888999999999999999999999993 2
Q ss_pred CCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC---Ccccc--CCCceEEeccccccceeeeEEEcCCCcEEeeeecCCC
Q 004824 262 IFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY---WTLIN--GAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPG 336 (728)
Q Consensus 262 ~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~ 336 (728)
....+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+
T Consensus 133 ---~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~------------------------- 184 (259)
T cd07473 133 ---PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD------------------------- 184 (259)
T ss_pred ---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC-------------------------
Confidence 256677778888999999999999998762 23333 357899998843
Q ss_pred CCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHH
Q 004824 337 NSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQ 416 (728)
Q Consensus 337 ~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~ 416 (728)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCc
Q 004824 417 TIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNF 496 (728)
Q Consensus 417 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 496 (728)
..+.++.||++||. +||+.|||.++++.... +.|
T Consensus 185 --------------------------~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-------------~~~ 218 (259)
T cd07473 185 --------------------------SNDALASFSNYGKK-------TVDLAAPGVDILSTSPG-------------GGY 218 (259)
T ss_pred --------------------------CCCCcCcccCCCCC-------CcEEEeccCCeEeccCC-------------CcE
Confidence 12355779999984 57999999999997654 689
Q ss_pred eeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 497 NLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 497 ~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 219 ~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 219 GYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred EEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=334.94 Aligned_cols=226 Identities=35% Similarity=0.510 Sum_probs=185.6
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCCh
Q 004824 107 GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHG 186 (728)
Q Consensus 107 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 186 (728)
||+|||||+||+++||+|.+. ++..++|.... .....|..+||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~----------~~~~~~~~~HG 43 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDD----------NNDYQDGNGHG 43 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCC----------CCCCCCCCCCH
Confidence 799999999999999999854 11222222210 02455788999
Q ss_pred hhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccCCCCCCCh
Q 004824 187 THTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLE 265 (728)
Q Consensus 187 ThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~ 265 (728)
|||||+|++..... .+.|+||+|+|+.+|+++..+ ....+++++++++++.|++|||||||.. ..
T Consensus 44 T~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~-----~~ 109 (229)
T cd07477 44 THVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGP-----SD 109 (229)
T ss_pred HHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccC-----CC
Confidence 99999999975432 238999999999999998776 6678999999999999999999999983 22
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCCCcc--ccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCee
Q 004824 266 DDAIAVATFAAMEKGVLVVASAGNDGPSYWTL--INGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQV 343 (728)
Q Consensus 266 ~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~ 343 (728)
...+..++..+.++|+++|+||||++...... +...+++|+||+.+.
T Consensus 110 ~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~------------------------------- 158 (229)
T cd07477 110 SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS------------------------------- 158 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC-------------------------------
Confidence 34556667788899999999999999876654 778899999998432
Q ss_pred eEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHHH
Q 004824 344 SLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIK 423 (728)
Q Consensus 344 ~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 423 (728)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeecccc
Q 004824 424 KCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTS 503 (728)
Q Consensus 424 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 503 (728)
.+.++.||++|+.. |++|||.+|+++++. +.|..++|||
T Consensus 159 --------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~GTS 197 (229)
T cd07477 159 --------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLSGTS 197 (229)
T ss_pred --------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEccHH
Confidence 12457899999754 999999999998875 5789999999
Q ss_pred chhHHHHHHHHHHhhhCCCCCHHHHHHHHHhc
Q 004824 504 MATPHVAGVAGLLKAAHPDWSPAAIRSALVTT 535 (728)
Q Consensus 504 mAaP~VAG~aALl~~~~p~lsp~~ik~~L~~T 535 (728)
||||+|||++|||+|++|.+++.+||++|++|
T Consensus 198 ~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 198 MATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=344.14 Aligned_cols=246 Identities=25% Similarity=0.274 Sum_probs=177.7
Q ss_pred CCCCCCC-CCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 96 SGAWPAS-NYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 96 ~~~~~~~-~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
..+|+.. ..|+||+|+|||+|||.+||+|.++... . ...
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~---------------------------~---~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT---------------------------L---ISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc---------------------------c---cCC----------
Confidence 5678774 4589999999999999999999864110 0 000
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH----CCCcE
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ----DGVDV 250 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~----~g~dV 250 (728)
..+.|..+|||||||||+|.. +.+|. .||||+|+|+.+|++. .++++++|++|++ .++.+
T Consensus 45 --~~~~d~~gHGT~VAGiIaa~~----n~~G~-----~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~ 108 (277)
T cd04843 45 --LTDQADSDHGTAVLGIIVAKD----NGIGV-----TGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVIL 108 (277)
T ss_pred --CCCCCCCCCcchhheeeeeec----CCCce-----eeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEE
Confidence 014577899999999999963 22233 7999999999999975 3456777777777 34678
Q ss_pred EEeccccCCCCC----CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccc-------------cCCCceEEecccccc
Q 004824 251 LSLSLGLSLNGI----FLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLI-------------NGAPWLLTVGAGTID 313 (728)
Q Consensus 251 IN~SlG~~~~~~----~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~-------------~~ap~vitVgast~~ 313 (728)
||||||...... ......+..++..+.++|++||+||||++....... ...|++|+|||++.+
T Consensus 109 in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~ 188 (277)
T cd04843 109 LEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST 188 (277)
T ss_pred EEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC
Confidence 999999841111 123445566777888999999999999987532111 123578888874311
Q ss_pred ceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecC
Q 004824 314 REFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISN 393 (728)
Q Consensus 314 ~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 393 (728)
.
T Consensus 189 ~------------------------------------------------------------------------------- 189 (277)
T cd04843 189 T------------------------------------------------------------------------------- 189 (277)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCc
Q 004824 394 SALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSL 473 (728)
Q Consensus 394 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~ 473 (728)
...++.||++||.. ||.|||++
T Consensus 190 --------------------------------------------------~~~~~~fSn~G~~v--------di~APG~~ 211 (277)
T cd04843 190 --------------------------------------------------GHTRLAFSNYGSRV--------DVYGWGEN 211 (277)
T ss_pred --------------------------------------------------CCccccccCCCCcc--------ceEcCCCC
Confidence 11378999999865 99999999
Q ss_pred eeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhh----h-CCCCCHHHHHHHHHhccc
Q 004824 474 VLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKA----A-HPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 474 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~p~lsp~~ik~~L~~TA~ 537 (728)
|+++....... ........|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 212 i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 212 VTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred eEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 99998753211 0011113457899999999999999999975 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=350.05 Aligned_cols=275 Identities=36% Similarity=0.463 Sum_probs=207.7
Q ss_pred EEEEEccCCCCCCCCCC-CCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChh
Q 004824 109 IIGLVDTGIWPESQSFS-DEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGT 187 (728)
Q Consensus 109 ~VgVIDtGid~~Hp~f~-~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 187 (728)
+|||||||||++||+|. +. + ...++.+.+.|.++. .......|..+|||
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~--------~~~~~~~~~~~HGT 50 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN--------PNPSPSDDDNGHGT 50 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB--------STTTSSSTSSSHHH
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC--------CCcCccccCCCccc
Confidence 69999999999999998 43 0 112233444454432 11234567889999
Q ss_pred hHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHH-HCCCcEEEeccccCC-CCCCCh
Q 004824 188 HTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQAL-QDGVDVLSLSLGLSL-NGIFLE 265 (728)
Q Consensus 188 hVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~-~~~~~~ 265 (728)
||||+|+|.. . .+..+ ..|+||+|+|+.+|++...+....+++++|++++ +.+++|||||||... ......
T Consensus 51 ~va~ii~~~~-~-~~~~~-----~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~ 123 (282)
T PF00082_consen 51 HVAGIIAGNG-G-NNGPG-----INGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSY 123 (282)
T ss_dssp HHHHHHHHTT-S-SSSSS-----ETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHH
T ss_pred hhhhhccccc-c-ccccc-----cccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccc
Confidence 9999999996 3 22222 2899999999999998877777888999999999 899999999998820 112223
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCe
Q 004824 266 DDAIAVATFAAMEKGVLVVASAGNDGPSYW---TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQ 342 (728)
Q Consensus 266 ~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~ 342 (728)
.+.+..++..+.++|+++|+||||++.... ..+...+++|+||+.+
T Consensus 124 ~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~------------------------------- 172 (282)
T PF00082_consen 124 SDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD------------------------------- 172 (282)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE-------------------------------
T ss_pred ccccccccccccccCcceeeccccccccccccccccccccccccccccc-------------------------------
Confidence 445566667888999999999999987664 3555668899998842
Q ss_pred eeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHH
Q 004824 343 VSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYI 422 (728)
Q Consensus 343 ~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 422 (728)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCCeEEEEeeeeEecccCCCccccccCCCCCC-CCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeecc
Q 004824 423 KKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFL-SCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSG 501 (728)
Q Consensus 423 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~-~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 501 (728)
....++.||++|+.. ..+ +||||+|||.+|++.++... ...|..++|
T Consensus 173 --------------------~~~~~~~~s~~g~~~~~~~--~~~di~a~G~~i~~~~~~~~----------~~~~~~~~G 220 (282)
T PF00082_consen 173 --------------------NNGQPASYSNYGGPSDDGR--IKPDIAAPGGNILSAVPGSD----------RGSYTSFSG 220 (282)
T ss_dssp --------------------TTSSBSTTSSBSTTETTCT--TCEEEEEECSSEEEEETTTE----------SEEEEEEES
T ss_pred --------------------ccccccccccccccccccc--cccccccccccccccccccc----------cccccccCc
Confidence 112568999997554 444 99999999999988887531 035788999
Q ss_pred ccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 502 TSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 502 TSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
||||||+|||++|||+|++|+|++.+||.+|++||.+..... .......||||+||+.+|++
T Consensus 221 TS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~----------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 221 TSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN----------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT----------SSSSHHHHTTSBE-HHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC----------CCCCCCCccCChhCHHHHhC
Confidence 999999999999999999999999999999999999987211 11244578999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=344.89 Aligned_cols=283 Identities=28% Similarity=0.427 Sum_probs=227.3
Q ss_pred ceeeEEEEEeCHHHHHHHhcCCCeEEEecCCcccccC-----CCCccccCCCCCCC-------CC----CCCCCCCCcEE
Q 004824 47 NSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHT-----THTSEFLGLSSLSG-------AW----PASNYGKGVII 110 (728)
Q Consensus 47 ~~~ngfs~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~----~~~~~G~Gv~V 110 (728)
.+|+|..-.++.+-+..++..|-++.++++...+... .+...-|||.++.. .| .+-..|+||..
T Consensus 144 ~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvta 223 (501)
T KOG1153|consen 144 RVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTA 223 (501)
T ss_pred chhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEE
Confidence 3889999999999999999999999999987665432 11222234432111 11 12336999999
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChhhHH
Q 004824 111 GLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTS 190 (728)
Q Consensus 111 gVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVA 190 (728)
.|+||||+.+||+|.++ +.| |.|.. +-....|++|||||||
T Consensus 224 Yv~DTGVni~H~dFegR------a~w-Ga~i~--------------------------------~~~~~~D~nGHGTH~A 264 (501)
T KOG1153|consen 224 YVLDTGVNIEHPDFEGR------AIW-GATIP--------------------------------PKDGDEDCNGHGTHVA 264 (501)
T ss_pred EEecccccccccccccc------eec-ccccC--------------------------------CCCcccccCCCcceee
Confidence 99999999999999986 334 11100 0124568999999999
Q ss_pred HHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC---------CCcEEEeccccCCC
Q 004824 191 SIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD---------GVDVLSLSLGLSLN 260 (728)
Q Consensus 191 giiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~dVIN~SlG~~~~ 260 (728)
|+|+++. .|+|.+++|+++||++++| +..+++++++|++++. +..|.|||+|+ .
T Consensus 265 G~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg--~ 328 (501)
T KOG1153|consen 265 GLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGG--F 328 (501)
T ss_pred eeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCC--c
Confidence 9999985 7999999999999999988 8999999999999986 47899999999 2
Q ss_pred CCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCC
Q 004824 261 GIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY-WTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSS 339 (728)
Q Consensus 261 ~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~ 339 (728)
..-.+..|++.|.+.||++++||||+..+. .+.|..+..+|||||+|.
T Consensus 329 ----~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~--------------------------- 377 (501)
T KOG1153|consen 329 ----RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK--------------------------- 377 (501)
T ss_pred ----ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc---------------------------
Confidence 445667788899999999999999998765 456678899999999642
Q ss_pred CCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHH
Q 004824 340 PSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTII 419 (728)
Q Consensus 340 ~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~ 419 (728)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceee
Q 004824 420 DYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLM 499 (728)
Q Consensus 420 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 499 (728)
.+.+|.||+||++. ||.|||++|+|+|.+. ++.-..+
T Consensus 378 ------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs-----------~~at~il 414 (501)
T KOG1153|consen 378 ------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGS-----------NNATAIL 414 (501)
T ss_pred ------------------------ccchhhhcCcccee--------eeecCchhhhhhhhcC-----------ccchhee
Confidence 23789999999998 9999999999999974 2567799
Q ss_pred ccccchhHHHHHHHHHHhhhCC---------CCCHHHHHHHHHhcccc
Q 004824 500 SGTSMATPHVAGVAGLLKAAHP---------DWSPAAIRSALVTTASP 538 (728)
Q Consensus 500 sGTSmAaP~VAG~aALl~~~~p---------~lsp~~ik~~L~~TA~~ 538 (728)
||||||+|||||++|.+++.+| ..||.++|..++.-..+
T Consensus 415 SGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 415 SGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred ecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence 9999999999999999999988 23788888888766553
|
|
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=334.98 Aligned_cols=215 Identities=23% Similarity=0.262 Sum_probs=166.2
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCC
Q 004824 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSG 184 (728)
Q Consensus 105 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~g 184 (728)
+++|+|||||||||++||+|.++ ++..++|...... .........|..|
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~----~~~~~~~~~d~~g 50 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD----GNKVSPYYVSADG 50 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC----cccCCCCCCCCCC
Confidence 78999999999999999999864 1112222211000 0000112346889
Q ss_pred ChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-------CChHHHHHHHHHHHHCCCcEEEecccc
Q 004824 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-------VYSSDVVAAIDQALQDGVDVLSLSLGL 257 (728)
Q Consensus 185 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIN~SlG~ 257 (728)
|||||||||+ |+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||.
T Consensus 51 HGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~ 112 (247)
T cd07491 51 HGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTI 112 (247)
T ss_pred cHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeec
Confidence 9999999994 789999999999998643 456789999999999999999999998
Q ss_pred CCCCCC---ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-c--cccCCCceEEeccccccceeeeEEEcCCCcEEeee
Q 004824 258 SLNGIF---LEDDAIAVATFAAMEKGVLVVASAGNDGPSYW-T--LINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFK 331 (728)
Q Consensus 258 ~~~~~~---~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~ 331 (728)
. ... .....+..++.+|.++|++||+||||+|.... . .+...|++|+|||.+.
T Consensus 113 ~--~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~------------------- 171 (247)
T cd07491 113 K--KPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE------------------- 171 (247)
T ss_pred c--cccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC-------------------
Confidence 3 321 13567788888999999999999999997754 3 3456789999998532
Q ss_pred ecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEee
Q 004824 332 SLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFIN 411 (728)
Q Consensus 332 s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~ 411 (728)
T Consensus 172 -------------------------------------------------------------------------------- 171 (247)
T cd07491 172 -------------------------------------------------------------------------------- 171 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCc
Q 004824 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGL 491 (728)
Q Consensus 412 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 491 (728)
.+.++.||++|+.. |++|||++|+++.+..
T Consensus 172 --------------------------------~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~---------- 201 (247)
T cd07491 172 --------------------------------DGGADAPVGDEDRV--------DYILPGENVEARDRPP---------- 201 (247)
T ss_pred --------------------------------CCCCccccCCCCcc--------eEEeCCCceecCCcCC----------
Confidence 22567899999765 9999999999987521
Q ss_pred ccCCceeeccccchhHHHHHHHHHHhhh
Q 004824 492 LYSNFNLMSGTSMATPHVAGVAGLLKAA 519 (728)
Q Consensus 492 ~~~~y~~~sGTSmAaP~VAG~aALl~~~ 519 (728)
..+.|..++|||||||||||++|||++.
T Consensus 202 ~~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 202 LSNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 1268999999999999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=342.83 Aligned_cols=252 Identities=29% Similarity=0.321 Sum_probs=177.6
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccc--cccccCCCCccCCCCCCCCCC
Q 004824 107 GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNK--GLIANNPKLKVRMNSPRDGSG 184 (728)
Q Consensus 107 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~--~~~~~~~~~~~~~~~~~d~~g 184 (728)
.|+|||||||||++||+|.+.-.. ..+.+.. .++......+.+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 389999999999999999863100 0000000 000000011111234567889
Q ss_pred ChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCC-ChHHHHHHHHHHHHCCCcEEEeccccCCCCC-
Q 004824 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVDVLSLSLGLSLNGI- 262 (728)
Q Consensus 185 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~-~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~- 262 (728)
|||||||+|+|+.. ..||||+|+|+.+|+++..+. ...+++++|++|++++++|||||||.. ...
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~-~~~~ 121 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGY-LIIG 121 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccC-CCCC
Confidence 99999999998642 159999999999999987764 888999999999999999999999984 111
Q ss_pred ------CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC----------------------ccccCCCceEEeccccccc
Q 004824 263 ------FLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW----------------------TLINGAPWLLTVGAGTIDR 314 (728)
Q Consensus 263 ------~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~----------------------~~~~~ap~vitVgast~~~ 314 (728)
......+..++..+.++|++||+||||+|.... ..+...+++|+|||++
T Consensus 122 ~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~--- 198 (294)
T cd07482 122 GEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATD--- 198 (294)
T ss_pred cccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeC---
Confidence 112245666777788999999999999996541 1223345556665532
Q ss_pred eeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCC
Q 004824 315 EFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNS 394 (728)
Q Consensus 315 ~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 394 (728)
T Consensus 199 -------------------------------------------------------------------------------- 198 (294)
T cd07482 199 -------------------------------------------------------------------------------- 198 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCce
Q 004824 395 ALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLV 474 (728)
Q Consensus 395 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 474 (728)
..+.++.||++|+. ++|++|||.++
T Consensus 199 ------------------------------------------------~~~~~~~~S~~g~~-------~~~~~apG~~~ 223 (294)
T cd07482 199 ------------------------------------------------NNGNLSSFSNYGNS-------RIDLAAPGGDF 223 (294)
T ss_pred ------------------------------------------------CCCCcCccccCCCC-------cceEECCCCCc
Confidence 23466789999874 45999999988
Q ss_pred eeccCCCCC---ccc------cccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCH-HHHHHHHHhc
Q 004824 475 LASWSPISS---VAE------VQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSP-AAIRSALVTT 535 (728)
Q Consensus 475 ~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp-~~ik~~L~~T 535 (728)
......... ... .......+.|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 224 LLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 532211100 000 011123468899999999999999999999999999999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=322.75 Aligned_cols=221 Identities=23% Similarity=0.266 Sum_probs=173.1
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCCh
Q 004824 107 GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHG 186 (728)
Q Consensus 107 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 186 (728)
||+|||||||||++||+|.+.-. ..+.+..+ ..........|..|||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~------~~~~~~~~~~d~~gHG 47 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDL------EIIVVSAEGGDKDGHG 47 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------cccccccc------ccccCCCCCCCCCCcH
Confidence 79999999999999999986411 00111000 0001113456788999
Q ss_pred hhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccCCCCCCCh
Q 004824 187 THTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLE 265 (728)
Q Consensus 187 ThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~ 265 (728)
|||||||++ .+|+++|+.+|+++..+ +...++++||+|++++|++|||||||.. ... .
T Consensus 48 T~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~--~~~-~ 106 (222)
T cd07492 48 TACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGP--GDR-D 106 (222)
T ss_pred HHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC--CCC-c
Confidence 999999964 46999999999998776 7888999999999999999999999983 322 2
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeE
Q 004824 266 DDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSL 345 (728)
Q Consensus 266 ~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~l 345 (728)
...+..++.++.++|+++|+||||++.... .+...+.+|+|++...+.
T Consensus 107 ~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------- 154 (222)
T cd07492 107 FPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------- 154 (222)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-------------------------------
Confidence 345667777888899999999999987544 366778999998743111
Q ss_pred EEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHhC
Q 004824 346 AFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKC 425 (728)
Q Consensus 346 v~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 425 (728)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccch
Q 004824 426 DNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMA 505 (728)
Q Consensus 426 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 505 (728)
..+. ++ .++|++|||.+|+++.+. +.|..++|||||
T Consensus 155 --------------------~~~~---~~--------~~~~~~apg~~i~~~~~~-------------~~~~~~~GTS~A 190 (222)
T cd07492 155 --------------------PKSF---WY--------IYVEFSADGVDIIAPAPH-------------GRYLTVSGNSFA 190 (222)
T ss_pred --------------------Cccc---cc--------CCceEEeCCCCeEeecCC-------------CCEEEeccHHHH
Confidence 1111 12 456999999999998875 578999999999
Q ss_pred hHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 506 TPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 506 aP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 191 ap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 191 APHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=343.03 Aligned_cols=249 Identities=24% Similarity=0.215 Sum_probs=179.6
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
...+|..+++|+||+|+|||||||++||+|.++... ...++|.....
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~-------- 74 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP-------- 74 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC--------
Confidence 466999999999999999999999999999864110 01112221110
Q ss_pred CCCCC--CCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEE
Q 004824 175 RMNSP--RDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLS 252 (728)
Q Consensus 175 ~~~~~--~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN 252 (728)
...+ .|..+|||||||||+|+..+.. | ..||||+|+|+.+|++... .....+..++.++.+ .++|||
T Consensus 75 -~~~~~~~~~~gHGT~vAgiiag~~~~~~---~-----~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin 143 (297)
T cd04059 75 -DPTPRYDDDNSHGTRCAGEIAAVGNNGI---C-----GVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYS 143 (297)
T ss_pred -CCCCccccccccCcceeeEEEeecCCCc---c-----cccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEE
Confidence 0112 2788999999999999854321 2 2799999999999998764 334455566665554 469999
Q ss_pred eccccCCCCC---CChhhHHHHHHHHHHh-----CCcEEEEecCCCCCCCCc----cccCCCceEEeccccccceeeeEE
Q 004824 253 LSLGLSLNGI---FLEDDAIAVATFAAME-----KGVLVVASAGNDGPSYWT----LINGAPWLLTVGAGTIDREFEGSL 320 (728)
Q Consensus 253 ~SlG~~~~~~---~~~~~~~~~~~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~ap~vitVgast~~~~~~~~~ 320 (728)
||||.. ... .........++.++.. +|++||+||||+|..... .....|++|+|||.+.
T Consensus 144 ~S~g~~-~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~-------- 214 (297)
T cd04059 144 NSWGPD-DDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA-------- 214 (297)
T ss_pred CCCCCC-CCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC--------
Confidence 999984 111 1122233334444443 699999999999973321 2235688999998431
Q ss_pred EcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccc
Q 004824 321 TLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVY 400 (728)
Q Consensus 321 ~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 400 (728)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCc-------
Q 004824 401 IRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSL------- 473 (728)
Q Consensus 401 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~------- 473 (728)
.+.++.||++|+.. ++.|||..
T Consensus 215 -------------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~ 243 (297)
T cd04059 215 -------------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEAS 243 (297)
T ss_pred -------------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCc
Confidence 23568899999876 89999987
Q ss_pred eeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 474 VLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 474 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
|+++.... ....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 244 i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 244 IVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred eEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66555431 0156788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=327.44 Aligned_cols=243 Identities=29% Similarity=0.347 Sum_probs=186.5
Q ss_pred CCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCC
Q 004824 104 YGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGS 183 (728)
Q Consensus 104 ~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~ 183 (728)
+|+||+|+|||+||+++||+|.+...... .+..... .......|..
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~~-------~~~~~~~~~~ 46 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVND-------AGYASNGDGD 46 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------ccccccc-------ccCCCCCCCC
Confidence 59999999999999999999986521100 0000000 0012345678
Q ss_pred CChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC--CChHHHHHHHHHHHHCCCcEEEeccccCCCC
Q 004824 184 GHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG--VYSSDVVAAIDQALQDGVDVLSLSLGLSLNG 261 (728)
Q Consensus 184 gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 261 (728)
+|||||||+|+|+..+ ....|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||.. ..
T Consensus 47 ~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~-~~ 116 (267)
T cd04848 47 SHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGN-PA 116 (267)
T ss_pred ChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCC-Cc
Confidence 9999999999998643 2238999999999999998764 5667788999999999999999999994 21
Q ss_pred CC-----------ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCcc---------ccCCCceEEeccccccceeeeEEE
Q 004824 262 IF-----------LEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTL---------INGAPWLLTVGAGTIDREFEGSLT 321 (728)
Q Consensus 262 ~~-----------~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~ap~vitVgast~~~~~~~~~~ 321 (728)
.. .....+...+..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------- 189 (267)
T cd04848 117 IDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------- 189 (267)
T ss_pred ccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-------
Confidence 11 2455666677788999999999999998754333 23457889998854221
Q ss_pred cCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCcccccc
Q 004824 322 LGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYI 401 (728)
Q Consensus 322 ~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 401 (728)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCcccc--ccCCCCCCCCCCCCCCcEEeCCCceeeccC
Q 004824 402 RSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDS--YSSRGPFLSCPNIPKPDILAPGSLVLASWS 479 (728)
Q Consensus 402 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~GP~~~~~~~lKPDI~APG~~I~sa~~ 479 (728)
.... ||++|+... .++++|||.+|+++.+
T Consensus 190 --------------------------------------------~~~~~~~s~~~~~~~-----~~~~~apG~~i~~~~~ 220 (267)
T cd04848 190 --------------------------------------------TIASYSYSNRCGVAA-----NWCLAAPGENIYSTDP 220 (267)
T ss_pred --------------------------------------------Ccccccccccchhhh-----hheeecCcCceeeccc
Confidence 2233 488887653 3489999999999877
Q ss_pred CCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 480 PISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 480 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
.. ...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 221 ~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 221 DG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred CC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 31 157889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=322.79 Aligned_cols=344 Identities=24% Similarity=0.325 Sum_probs=252.8
Q ss_pred ccHHHHHHHHhccccccc-cccccccCCcccEEEEecceeeEEEEEeC-----HHHHHHHhcCCCeEEEecCCcccccCC
Q 004824 11 SSLYTWYLFMLCSVSESS-KATATSSTISSKLVYTYANSIHGFSATLT-----VSELETLKKLPGYISSTPDRPLAVHTT 84 (728)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~y~~~~ngfs~~l~-----~~~~~~L~~~p~V~~V~~~~~~~~~~~ 84 (728)
..|+.+++|.|++....- +- -.....-..|-.-|.-+-++-. .-+|+.|..+|+|+.|.|.+....-..
T Consensus 63 k~r~syi~skl~gS~VtnWri-----ipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l~ 137 (1033)
T KOG4266|consen 63 KDRRSYIESKLRGSGVTNWRI-----IPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGLS 137 (1033)
T ss_pred hHHHHHHHHHhhcCCCCceeE-----eeccCccccCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhccc
Confidence 357778888777433110 00 0012222344444544444332 234789999999999999876543100
Q ss_pred -----------------------------------CCccccCCC-------CCCCCCCCCCCCCCcEEEEEccCCCCCCC
Q 004824 85 -----------------------------------HTSEFLGLS-------SLSGAWPASNYGKGVIIGLVDTGIWPESQ 122 (728)
Q Consensus 85 -----------------------------------~s~~~~g~~-------~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp 122 (728)
+++..+... .++-+|.+|++|++|+|||+|||+.-+||
T Consensus 138 y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HP 217 (1033)
T KOG4266|consen 138 YPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADHP 217 (1033)
T ss_pred ccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCCc
Confidence 000000000 13459999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChhhHHHHhccCCcCCCC
Q 004824 123 SFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSS 202 (728)
Q Consensus 123 ~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~ 202 (728)
.|+.-. ...++.+ .+.-.|..||||.|||+|||..
T Consensus 218 HFrnvK----------------------------ERTNWTN------------E~tLdD~lgHGTFVAGvia~~~----- 252 (1033)
T KOG4266|consen 218 HFRNVK----------------------------ERTNWTN------------EDTLDDNLGHGTFVAGVIAGRN----- 252 (1033)
T ss_pred cccchh----------------------------hhcCCcC------------ccccccCcccceeEeeeeccch-----
Confidence 998520 0001111 1245578899999999999974
Q ss_pred cccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCc
Q 004824 203 YFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGV 281 (728)
Q Consensus 203 ~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi 281 (728)
...|.||+++|+++|||.+.- .+++++++|+.||+....||+|+|+|++ .+.+.++-.-+.+...++|
T Consensus 253 -------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP----DfmD~PFVeKVwEltAnNv 321 (1033)
T KOG4266|consen 253 -------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP----DFMDLPFVEKVWELTANNV 321 (1033)
T ss_pred -------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc----ccccchHHHHHHhhccCcE
Confidence 137999999999999998765 8899999999999999999999999995 4555667666778889999
Q ss_pred EEEEecCCCCCCCCccccCCC--ceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCcc
Q 004824 282 LVVASAGNDGPSYWTLINGAP--WLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKK 359 (728)
Q Consensus 282 ~vV~AAGN~g~~~~~~~~~ap--~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~ 359 (728)
++|.|+||+|+-.++..+++. .||.||.
T Consensus 322 IMvSAiGNDGPLYGTLNNPaDQsDViGVGG-------------------------------------------------- 351 (1033)
T KOG4266|consen 322 IMVSAIGNDGPLYGTLNNPADQSDVIGVGG-------------------------------------------------- 351 (1033)
T ss_pred EEEEecCCCCcceeecCCcccccceeeecc--------------------------------------------------
Confidence 999999999999998887664 4555543
Q ss_pred CcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEe
Q 004824 360 VINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVI 439 (728)
Q Consensus 360 ~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 439 (728)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCccccccCCCCCC----CCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHH
Q 004824 440 GTKPAPMVDSYSSRGPFL----SCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGL 515 (728)
Q Consensus 440 ~~~~~~~~a~fSS~GP~~----~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 515 (728)
....+.+|.|||||-+. .+.+.+||||++.|.+|...... .+...+||||.|+|.|||+++|
T Consensus 352 -IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~L 417 (1033)
T KOG4266|consen 352 -IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCL 417 (1033)
T ss_pred -ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhceeee
Confidence 22345889999999642 24466999999999999876654 5778899999999999999999
Q ss_pred Hhh----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 516 LKA----AHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 516 l~~----~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
|.+ +.--+.|+-+|++|+..|.++... +-|+||+|++|+.++.+
T Consensus 418 LvS~~~qk~dl~NPASmKQaLiegA~kLpg~--------------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 418 LVSVEAQKKDLLNPASMKQALIEGAAKLPGP--------------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred EeeeheehhhccCHHHHHHHHHhHHhhCCCC--------------chhhccCcchhHHHHHH
Confidence 976 233468999999999999998642 45699999999988866
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-32 Score=279.36 Aligned_cols=194 Identities=20% Similarity=0.113 Sum_probs=140.9
Q ss_pred CCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHH--HHCCCcEEEeccc
Q 004824 179 PRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQA--LQDGVDVLSLSLG 256 (728)
Q Consensus 179 ~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIN~SlG 256 (728)
..|..+|||||||||||. .|++|+|+|+..++.. .....+..+++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457899999999999997 4678999998755521 2334466778888 5678999999999
Q ss_pred cCCCCCC-----ChhhHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CccccCCCceEEeccccccceeeeEEEcCCC
Q 004824 257 LSLNGIF-----LEDDAIAVATFAAMEK-GVLVVASAGNDGPSY-----WTLINGAPWLLTVGAGTIDREFEGSLTLGNG 325 (728)
Q Consensus 257 ~~~~~~~-----~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~ap~vitVgast~~~~~~~~~~~~~g 325 (728)
.. .... ...+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 95 ~~-~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 95 EG-LKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred cC-CCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 84 2221 1233456666666655 999999999999753 233456788999998532211
Q ss_pred cEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCc
Q 004824 326 VQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSF 405 (728)
Q Consensus 326 ~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 405 (728)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCC--CCCCCCCCCCCCcEEeCCCceeeccCCCCC
Q 004824 406 PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSR--GPFLSCPNIPKPDILAPGSLVLASWSPISS 483 (728)
Q Consensus 406 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~--GP~~~~~~~lKPDI~APG~~I~sa~~~~~~ 483 (728)
....+.||++ +|..+.+ .||||+|||++|++ +.
T Consensus 164 --------------------------------------~~~~s~~sn~~~~~~~~~~--~~~di~APG~~i~s--~~--- 198 (247)
T cd07488 164 --------------------------------------RFFASDVSNAGSEINSYGR--RKVLIVAPGSNYNL--PD--- 198 (247)
T ss_pred --------------------------------------cceecccccccCCCCCCCC--ceeEEEEeeeeEEC--CC---
Confidence 0023455654 4544444 89999999999998 22
Q ss_pred ccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCC------HHHHHHHHHhcc
Q 004824 484 VAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWS------PAAIRSALVTTA 536 (728)
Q Consensus 484 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls------p~~ik~~L~~TA 536 (728)
+.|..++|||||||||||++|||++++|.+. --++|.+|+.|+
T Consensus 199 ----------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 199 ----------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred ----------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 5688999999999999999999999987665 456777777653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-32 Score=298.92 Aligned_cols=239 Identities=28% Similarity=0.390 Sum_probs=178.3
Q ss_pred CCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCC-C--CChHHHHHHHHHHHHCCCcEEEeccccC
Q 004824 182 GSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRH-G--VYSSDVVAAIDQALQDGVDVLSLSLGLS 258 (728)
Q Consensus 182 ~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 258 (728)
...|||||||||+|+..+... ..|+||+|+|+.+++.+.. | -+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 346999999999999865433 3799999999999997643 2 4556788999999999999999999985
Q ss_pred CCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCcccc---CCCceEEeccccccceeeeEEEcCCCcEEeeeecCC
Q 004824 259 LNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLIN---GAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYP 335 (728)
Q Consensus 259 ~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~ 335 (728)
...+.....+...-..+.++|+++|.||||.||...+++. ..-.+|.|||.-...-.
T Consensus 381 -a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm------------------- 440 (1304)
T KOG1114|consen 381 -AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM------------------- 440 (1304)
T ss_pred -CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH-------------------
Confidence 3333334444444344558999999999999998876654 34478888882110000
Q ss_pred CCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccH
Q 004824 336 GNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDG 415 (728)
Q Consensus 336 ~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g 415 (728)
...|.+.
T Consensus 441 ----~a~y~~~--------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 441 ----QAEYSVR--------------------------------------------------------------------- 447 (1304)
T ss_pred ----Hhhhhhh---------------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCC
Q 004824 416 QTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSN 495 (728)
Q Consensus 416 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 495 (728)
.........+|||||+.|+. +--.|+|||+-|.+- |... ...
T Consensus 448 -------------------------e~vp~~~YtWsSRgP~~DG~--lGVsi~APggAiAsV-P~~t----------lq~ 489 (1304)
T KOG1114|consen 448 -------------------------EPVPSNPYTWSSRGPCLDGD--LGVSISAPGGAIASV-PQYT----------LQN 489 (1304)
T ss_pred -------------------------ccCCCCccccccCCCCcCCC--cceEEecCCccccCC-chhh----------hhh
Confidence 01123467899999999977 888999999988552 3211 145
Q ss_pred ceeeccccchhHHHHHHHHHHhh----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCcccc
Q 004824 496 FNLMSGTSMATPHVAGVAGLLKA----AHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKA 571 (728)
Q Consensus 496 y~~~sGTSmAaP~VAG~aALl~~----~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~A 571 (728)
-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||++++.- .+|.||.|+|++++|
T Consensus 490 ~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i--------------d~faqG~GmlqVdkA 555 (1304)
T KOG1114|consen 490 SQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI--------------DSFAQGQGMLQVDKA 555 (1304)
T ss_pred hhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc--------------chhccCcceeehhHH
Confidence 67899999999999999999965 467899999999999999988642 567999999999999
Q ss_pred CC
Q 004824 572 LD 573 (728)
Q Consensus 572 l~ 573 (728)
.+
T Consensus 556 yE 557 (1304)
T KOG1114|consen 556 YE 557 (1304)
T ss_pred HH
Confidence 75
|
|
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.3e-31 Score=268.65 Aligned_cols=196 Identities=43% Similarity=0.570 Sum_probs=158.0
Q ss_pred CCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHH-HCCCcEEEecc
Q 004824 178 SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQAL-QDGVDVLSLSL 255 (728)
Q Consensus 178 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIN~Sl 255 (728)
...+..+||||||++|++....... .|+||+++|+.+|+....+ .....+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~~---------~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGGG---------VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCCC---------EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 3456789999999999998643321 6999999999999987765 67788999999999 89999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHhC-CcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeeEEEcCCCcEEeee
Q 004824 256 GLSLNGIFLEDDAIAVATFAAMEK-GVLVVASAGNDGPSYW---TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFK 331 (728)
Q Consensus 256 G~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~ 331 (728)
|.. ... ....+...+..+.++ |+++|+||||.+.... ..+...+++|+||+.+.+.
T Consensus 110 g~~--~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------- 169 (241)
T cd00306 110 GGP--GSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------- 169 (241)
T ss_pred CCC--CCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------
Confidence 993 222 344566666777777 9999999999998776 4777889999999854221
Q ss_pred ecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEee
Q 004824 332 SLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFIN 411 (728)
Q Consensus 332 s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~ 411 (728)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccc-cccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccC
Q 004824 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVD-SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSG 490 (728)
Q Consensus 412 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 490 (728)
... .++++| .|||+.|||.++......
T Consensus 170 ----------------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~---------- 197 (241)
T cd00306 170 ----------------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT---------- 197 (241)
T ss_pred ----------------------------------CccCCcCCCC--------CCceEEeCcCCccCcccC----------
Confidence 112 444444 577999999999875111
Q ss_pred cccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhc
Q 004824 491 LLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTT 535 (728)
Q Consensus 491 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~T 535 (728)
....+..++|||||||+|||++|||+|++|++++.++|++|++|
T Consensus 198 -~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 198 -GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred -CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 12688999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=234.72 Aligned_cols=249 Identities=33% Similarity=0.425 Sum_probs=186.9
Q ss_pred CCCCCC--CCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCc
Q 004824 96 SGAWPA--SNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLK 173 (728)
Q Consensus 96 ~~~~~~--~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~ 173 (728)
...|.. +++|+|++|+|||+||+..||+|.+... ..++|.+..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~---------------------------~~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV---------------------------AGGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhcccc---------------------------cccccccCC--------
Confidence 457777 8999999999999999999999986411 002222211
Q ss_pred cCCC-CCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCC-C-CChHHHHHHHHHHHHCC--C
Q 004824 174 VRMN-SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRH-G-VYSSDVVAAIDQALQDG--V 248 (728)
Q Consensus 174 ~~~~-~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~-g-~~~~~i~~ai~~a~~~g--~ 248 (728)
.. ...|..+|||||++++++....+ .....|+||+++++.++++... + ....+++.+|+++++.+ +
T Consensus 175 --~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 245 (508)
T COG1404 175 --PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPA 245 (508)
T ss_pred --CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCC
Confidence 01 24688999999999999843111 1113899999999999999865 5 67778899999999999 9
Q ss_pred cEEEeccccCCCCCCChhhHHHHHHHHHHhCC-cEEEEecCCCCCCCC----ccccCC--CceEEeccccccceeeeEEE
Q 004824 249 DVLSLSLGLSLNGIFLEDDAIAVATFAAMEKG-VLVVASAGNDGPSYW----TLINGA--PWLLTVGAGTIDREFEGSLT 321 (728)
Q Consensus 249 dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~a--p~vitVgast~~~~~~~~~~ 321 (728)
++||||+|. .........+..++..+...| +++|+|+||.+.... ..+... +.+++||+..
T Consensus 246 ~~in~s~g~--~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~---------- 313 (508)
T COG1404 246 DVINLSLGG--SLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD---------- 313 (508)
T ss_pred cEEEecCCC--CccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC----------
Confidence 999999998 322234455566666777766 999999999997753 122222 3566666532
Q ss_pred cCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCcccccc
Q 004824 322 LGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYI 401 (728)
Q Consensus 322 ~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 401 (728)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceee-----
Q 004824 402 RSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLA----- 476 (728)
Q Consensus 402 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s----- 476 (728)
..+.++.||++|+. -..++.|||.+|.+
T Consensus 314 -----------------------------------------~~~~~~~~s~~g~~------~~~~~~apg~~i~~~~~~~ 346 (508)
T COG1404 314 -----------------------------------------LSDTVASFSNDGSP------TGVDIAAPGVNILSLSAVN 346 (508)
T ss_pred -----------------------------------------CCCccccccccCCC------CCcceeCCCccccccccce
Confidence 12367899999975 13499999999988
Q ss_pred ccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCC-CCCHHHHHHHHHhcccc
Q 004824 477 SWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHP-DWSPAAIRSALVTTASP 538 (728)
Q Consensus 477 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~lsp~~ik~~L~~TA~~ 538 (728)
.+++. ...|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 347 ~~~~~-----------~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 347 TLPGD-----------GADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred eeeCC-----------ccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 44431 02499999999999999999999999999 89999999998888874
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-21 Score=193.08 Aligned_cols=308 Identities=19% Similarity=0.225 Sum_probs=184.8
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccC
Q 004824 96 SGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVR 175 (728)
Q Consensus 96 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 175 (728)
..+|..+++|++|+++|+|.||||.||++... |+ --..++|.++ ++.+
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------yn-------aeasydfssn-------dpfp 198 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------YN-------AEASYDFSSN-------DPFP 198 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------cC-------ceeecccccC-------CCCC
Confidence 45899999999999999999999999999743 11 1123334332 1222
Q ss_pred CCCCCC--CCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH-CCCcEEE
Q 004824 176 MNSPRD--GSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ-DGVDVLS 252 (728)
Q Consensus 176 ~~~~~d--~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN 252 (728)
+....| .+.|||.|||-+++...++ .+| .|||.+.++..+|+++. .+..|+++|-...-+ ...+|.+
T Consensus 199 yprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq--pymtdlieansmghep~kihiys 268 (629)
T KOG3526|consen 199 YPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYS 268 (629)
T ss_pred CCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEe
Confidence 222223 5789999999988776443 444 59999999999999865 556666654332222 2478999
Q ss_pred eccccCCCCCCChh---hHHHHHHHHHH-----hCCcEEEEecCCCCCCCCc-cc--cCCCceEEeccccccceeeeEEE
Q 004824 253 LSLGLSLNGIFLED---DAIAVATFAAM-----EKGVLVVASAGNDGPSYWT-LI--NGAPWLLTVGAGTIDREFEGSLT 321 (728)
Q Consensus 253 ~SlG~~~~~~~~~~---~~~~~~~~~a~-----~~Gi~vV~AAGN~g~~~~~-~~--~~ap~vitVgast~~~~~~~~~~ 321 (728)
.|||.. +.....+ +...+++.+-+ ..|-++|+|.|..|..... .. ..+-|.|++-+.-.|
T Consensus 269 aswgpt-ddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaind-------- 339 (629)
T KOG3526|consen 269 ASWGPT-DDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAIND-------- 339 (629)
T ss_pred cccCcC-CCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcC--------
Confidence 999985 2222111 22222222222 3578999999998865422 22 234577776542111
Q ss_pred cCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCcccccc
Q 004824 322 LGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYI 401 (728)
Q Consensus 322 ~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 401 (728)
|+.- -|++.|.
T Consensus 340 ---g~na-----------------hydescs------------------------------------------------- 350 (629)
T KOG3526|consen 340 ---GENA-----------------HYDESCS------------------------------------------------- 350 (629)
T ss_pred ---Cccc-----------------cccchhh-------------------------------------------------
Confidence 1100 0111111
Q ss_pred ccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCC
Q 004824 402 RSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPI 481 (728)
Q Consensus 402 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 481 (728)
.-..+.||+-|.++.. | +-.+.
T Consensus 351 ------------------------------------------stlastfsng~rnpet-----------g--vattd--- 372 (629)
T KOG3526|consen 351 ------------------------------------------STLASTFSNGGRNPET-----------G--VATTD--- 372 (629)
T ss_pred ------------------------------------------HHHHHHhhcCCcCCCc-----------c--eeeec---
Confidence 0123567776654421 1 11110
Q ss_pred CCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCc--c-ccCCCCCCCCCC
Q 004824 482 SSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSH--I-KDASNNNFPASP 558 (728)
Q Consensus 482 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~--~-~d~~~~~~~~~~ 558 (728)
-.+......||||.|+|-.||+.||-++++|.|+..+++.+-.-|..+..-.... + +.... .....+
T Consensus 373 ---------lyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mng-vglefn 442 (629)
T KOG3526|consen 373 ---------LYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNG-VGLEFN 442 (629)
T ss_pred ---------cccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccc-cceeee
Confidence 0013445689999999999999999999999999999999888777654321110 0 00000 222334
Q ss_pred CccCCCccCccccCCCCceecCChhhHHHHHHhcCC
Q 004824 559 LDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNY 594 (728)
Q Consensus 559 ~~~G~G~in~~~Al~~~lv~~~~~~dy~~~lc~~~~ 594 (728)
..||+|.+|+.+-+....-+...+. .|-|..|.
T Consensus 443 hlfgfgvldagamv~lak~wktvpp---ryhc~ag~ 475 (629)
T KOG3526|consen 443 HLFGFGVLDAGAMVMLAKAWKTVPP---RYHCTAGL 475 (629)
T ss_pred cccccccccHHHHHHHHHHhccCCC---ceeecccc
Confidence 5799999998776554333333333 35677664
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-17 Score=177.76 Aligned_cols=101 Identities=24% Similarity=0.279 Sum_probs=81.3
Q ss_pred ccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHC---CCcEEEeccccCCCCCC---ChhhHHHHHHHHHHhCCcEE
Q 004824 210 IARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQD---GVDVLSLSLGLSLNGIF---LEDDAIAVATFAAMEKGVLV 283 (728)
Q Consensus 210 ~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~~~---~~~~~~~~~~~~a~~~Gi~v 283 (728)
.+.||||+|+|+.|++++.. ...++.++.+++.+ +++|||+|||.. ... .+.+.+..++.+|..+||+|
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~--e~~~~~~~~~~~~~~~~~a~~~Gitv 156 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEP--EQSLPPAYAQRVCNLFAQAAAQGITV 156 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCcc--ccccCHHHHHHHHHHHHHHHhCCeEE
Confidence 35899999999999997542 45678889999887 999999999994 222 23466777888899999999
Q ss_pred EEecCCCCCCCC-----------ccccCCCceEEeccccccce
Q 004824 284 VASAGNDGPSYW-----------TLINGAPWLLTVGAGTIDRE 315 (728)
Q Consensus 284 V~AAGN~g~~~~-----------~~~~~ap~vitVgast~~~~ 315 (728)
|+|+||+|.... ..+..+|||++||+++....
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 999999997653 34678899999999876554
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=116.39 Aligned_cols=113 Identities=22% Similarity=0.301 Sum_probs=94.2
Q ss_pred CCeeeEEEccCCCCCccCcc-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-cccccc--cCccEEEeeccc
Q 004824 340 PSQVSLAFMDACDSVTELKK-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LEVYIR--SSFPAAFINVND 414 (728)
Q Consensus 340 ~~~~~lv~~~~c~~~~~~~~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~~~--~~~p~~~i~~~~ 414 (728)
....+++|.+.|...++... ++|||+||+ +.|.+.+|..+++++||.|+|++|+... ...... ..+|++.|+..+
T Consensus 25 ~~~~~lv~~g~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~d 104 (143)
T cd02133 25 GKTYELVDAGLGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKED 104 (143)
T ss_pred CcEEEEEEccCCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHH
Confidence 46889999888888777766 999999999 9999999999999999999999998865 222222 234999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCC
Q 004824 415 GQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFL 457 (728)
Q Consensus 415 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~ 457 (728)
|+.|++|+++ +++|.+..+.. ...++.++.||||||.-
T Consensus 105 G~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 105 GEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred HHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999987 67777777665 56778899999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.2e-11 Score=108.39 Aligned_cols=110 Identities=33% Similarity=0.511 Sum_probs=89.9
Q ss_pred EEcCCCcEEeeeecCCCCCCCCeeeEEE---------ccCCCCCccCcc-CcceEEEEc-cCC-chhHHHHHHHHcCceE
Q 004824 320 LTLGNGVQINFKSLYPGNSSPSQVSLAF---------MDACDSVTELKK-VINSIVVCR-EDS-SISSQIDNAVAAGVLG 387 (728)
Q Consensus 320 ~~~~~g~~~~g~s~~~~~~~~~~~~lv~---------~~~c~~~~~~~~-~~gkiv~~~-g~~-~~~~~~~~~~~~Ga~g 387 (728)
++|+||+++.|++++.+.. ..+++++ ...|.+..+.+. ++||||+|+ +.| .+.+|..+++++||.|
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~g 79 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAG 79 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcE
Confidence 6789999999999997664 3455654 267988888766 999999999 888 8999999999999999
Q ss_pred EEEecCCCc-cccccc-cCccEEEeecccHHHHHHHHHhCCCCeEE
Q 004824 388 AVFISNSAL-LEVYIR-SSFPAAFINVNDGQTIIDYIKKCDNPTGS 431 (728)
Q Consensus 388 ~i~~n~~~~-~~~~~~-~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 431 (728)
+|++++... ...... ..+|++.|+..+|+.|++|++++.+++++
T Consensus 80 vI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 80 MILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999998766 222222 34599999999999999999988776654
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-07 Score=82.92 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=59.8
Q ss_pred eeEEEEEEEEeCCCCCeEEEEEEec--------CCC----------e-EEEEEeceEEEeccCeeEEEEEEEEecccC--
Q 004824 636 VVKEFWRTVTNAEEVGTAYTAKLTG--------IDG----------L-KVYVEPRRLVFKQKYEKQSYKLTLEGPKLL-- 694 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~-- 694 (728)
...+++.+|+|.|+.+.+|++++.. ..| . .+...|.+++++ +|++++|+|+|+.++..
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~-ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVP-AGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEEC-CCCEEEEEEEEEehhcCCc
Confidence 3588888999999999999998761 111 1 567778889998 89999999999996533
Q ss_pred -CCceEEEEEEEEeCCCCcEEEeEEE
Q 004824 695 -EKDVVYGSISWVDDDGRYEVRSPIV 719 (728)
Q Consensus 695 -~~~~~~G~i~~~~~~~~~~v~~P~~ 719 (728)
+..+++|+|.++++++.+.+++||+
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 3679999999999755569999996
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.7e-08 Score=85.00 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=61.1
Q ss_pred eeeEE------EccCCCCCccCcc-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-----cc-cccccCccE
Q 004824 342 QVSLA------FMDACDSVTELKK-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-----LE-VYIRSSFPA 407 (728)
Q Consensus 342 ~~~lv------~~~~c~~~~~~~~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-----~~-~~~~~~~p~ 407 (728)
..+|| ....|.+...... ++||||||+ |.|.|.+|..+++++||.|+|++|.... .. ......+|+
T Consensus 7 ~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~ 86 (101)
T PF02225_consen 7 TGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPV 86 (101)
T ss_dssp EEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEE
T ss_pred EEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEE
Confidence 45666 3355666666666 999999999 9999999999999999999999992221 11 112234599
Q ss_pred EEeecccHHHHHHHH
Q 004824 408 AFINVNDGQTIIDYI 422 (728)
Q Consensus 408 ~~i~~~~g~~l~~~~ 422 (728)
++|+..+|+.|++|+
T Consensus 87 v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 87 VFISYEDGEALLAYI 101 (101)
T ss_dssp EEE-HHHHHHHHHHH
T ss_pred EEeCHHHHhhhhccC
Confidence 999999999999985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-07 Score=82.21 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=68.3
Q ss_pred cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc--c-c--cccc-----cCccEEEeecccHHH
Q 004824 349 DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL--L-E--VYIR-----SSFPAAFINVNDGQT 417 (728)
Q Consensus 349 ~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~-~--~~~~-----~~~p~~~i~~~~g~~ 417 (728)
..|.+....++++|||+|++ |.|.|.+|..+++++||.++|++|+... . . +..+ .++|+++|+..+|+.
T Consensus 22 ~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~ 101 (118)
T cd02127 22 EACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYM 101 (118)
T ss_pred ccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHH
Confidence 67987554344999999999 9999999999999999999999998654 1 1 1121 245999999999999
Q ss_pred HHHHHHhCCCCeEEEE
Q 004824 418 IIDYIKKCDNPTGSLQ 433 (728)
Q Consensus 418 l~~~~~~~~~~~~~i~ 433 (728)
|++.+..+..+++.|.
T Consensus 102 L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 102 IRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHcCCceEEeee
Confidence 9999998877766553
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=80.53 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=69.7
Q ss_pred eeeEEEc--cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCC-Cc-cc-ccc---ccCccEEEeec
Q 004824 342 QVSLAFM--DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNS-AL-LE-VYI---RSSFPAAFINV 412 (728)
Q Consensus 342 ~~~lv~~--~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~-~~-~~-~~~---~~~~p~~~i~~ 412 (728)
.-++++. ..|.+..+..+++|||+|++ |.|.|.+|..+++++||.|+|++|+. .. .. ... ...+|++.|+.
T Consensus 23 ~g~lv~~~~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~ 102 (122)
T cd02130 23 TGPLVVVPNLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQ 102 (122)
T ss_pred EEEEEEeCCCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecH
Confidence 4556664 47987666445999999999 99999999999999999999999987 33 11 111 22349999999
Q ss_pred ccHHHHHHHHHhCCCCeE
Q 004824 413 NDGQTIIDYIKKCDNPTG 430 (728)
Q Consensus 413 ~~g~~l~~~~~~~~~~~~ 430 (728)
++|+.|++.++++.+.++
T Consensus 103 ~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 103 EDGKALVAALANGGEVSA 120 (122)
T ss_pred HHHHHHHHHHhcCCcEEE
Confidence 999999999987766554
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-07 Score=80.17 Aligned_cols=67 Identities=40% Similarity=0.683 Sum_probs=50.1
Q ss_pred cccHHHHHHHHhccccccccccccccCCcccEEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEecCCccccc
Q 004824 10 YSSLYTWYLFMLCSVSESSKATATSSTISSKLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVH 82 (728)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ngfs~~l~~~~~~~L~~~p~V~~V~~~~~~~~~ 82 (728)
...|.+|+.+++.+..... ...+.+++|+|+..||||+++++++++++|+++|+|++|+|++.+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 16 FSSHKSWQASILKSALKSA------SSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHHHHHHHH----HHHHTH-------TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred HHHHHHHHHHHHhhhhhhh------cccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 5678889998876532210 134689999999999999999999999999999999999999988764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-07 Score=83.48 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=65.9
Q ss_pred cCCCCCccCcc-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc--c--cccc---ccCccEEEeecccHHHHH
Q 004824 349 DACDSVTELKK-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL--L--EVYI---RSSFPAAFINVNDGQTII 419 (728)
Q Consensus 349 ~~c~~~~~~~~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~--~~~~---~~~~p~~~i~~~~g~~l~ 419 (728)
..|.+..+... ++|||+||+ |.|.+.+|..+++++||.|+|++|+... . .... ...+|++.|+..+|+.|+
T Consensus 30 ~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l~ 109 (122)
T cd04816 30 AGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAALR 109 (122)
T ss_pred cCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHHH
Confidence 67988777765 999999999 9999999999999999999999998764 1 1111 123499999999999999
Q ss_pred HHHHhCCCCe
Q 004824 420 DYIKKCDNPT 429 (728)
Q Consensus 420 ~~~~~~~~~~ 429 (728)
+++..+.+.+
T Consensus 110 ~~l~~g~~v~ 119 (122)
T cd04816 110 RRLGAGETLE 119 (122)
T ss_pred HHHcCCCEEE
Confidence 9998765433
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.46 E-value=6e-07 Score=81.91 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=66.8
Q ss_pred cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-cccc--c--cc-CccEEEeecccHHHHHHH
Q 004824 349 DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LEVY--I--RS-SFPAAFINVNDGQTIIDY 421 (728)
Q Consensus 349 ~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~--~--~~-~~p~~~i~~~~g~~l~~~ 421 (728)
..|.+..+.++++|||++|+ +.|.+.+|..+++++||.|+|++|+... .... . .. .+|++.|+.++|+.|++|
T Consensus 28 ~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~ 107 (118)
T cd04818 28 DGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAA 107 (118)
T ss_pred cccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHHH
Confidence 67988887556999999999 9999999999999999999999988774 1111 1 12 349999999999999999
Q ss_pred HHhCCCCeE
Q 004824 422 IKKCDNPTG 430 (728)
Q Consensus 422 ~~~~~~~~~ 430 (728)
++.+...++
T Consensus 108 l~~g~~v~v 116 (118)
T cd04818 108 LAAGGTVTV 116 (118)
T ss_pred HhcCCcEEE
Confidence 987665443
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.1e-07 Score=98.68 Aligned_cols=160 Identities=19% Similarity=0.173 Sum_probs=99.5
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
+...|..+++|+++.++|.|+|+...||+.... ....+.+++.... ..+.
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~-----~~p~ 71 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHD-----NDPE 71 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCC-----CCcc
Confidence 467999999999999999999999999998742 1122223332211 1111
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH-CCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ-DGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~ 253 (728)
+-.+......|||-|++-.+....+.. . ..|+++++++..++++.. ...+...+...... .-+++-+.
T Consensus 72 ~~~~~~~~~~~g~~Ca~~~a~~~~~~~--C------~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~sc 140 (431)
T KOG3525|consen 72 PRCDGTNENKHGTRCAGCVAARANNLT--C------GVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSC 140 (431)
T ss_pred cccCCCCccccCCCCCcccccccCCCc--C------CCCcccCccccceeeeee---ecccceecccccCCCCCceeecC
Confidence 112222357899999999998752221 1 269999999999999753 11133333333333 34789999
Q ss_pred ccccCCCCCC--ChhhHHHHHHHH-----HHhCCcEEEEecCCCCCCCC
Q 004824 254 SLGLSLNGIF--LEDDAIAVATFA-----AMEKGVLVVASAGNDGPSYW 295 (728)
Q Consensus 254 SlG~~~~~~~--~~~~~~~~~~~~-----a~~~Gi~vV~AAGN~g~~~~ 295 (728)
|||..+.... ........++.. ...+|-+.++|.||.|....
T Consensus 141 sw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 141 SWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 9998511111 111122222222 34678999999999887654
|
|
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-06 Score=82.25 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=67.5
Q ss_pred cCCCCCcc--Ccc-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCC-c-ccc--ccc--cCccEEEeecccHHHH
Q 004824 349 DACDSVTE--LKK-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSA-L-LEV--YIR--SSFPAAFINVNDGQTI 418 (728)
Q Consensus 349 ~~c~~~~~--~~~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~-~-~~~--~~~--~~~p~~~i~~~~g~~l 418 (728)
..|.+... .+. +.|+|+|++ |.|.|.+|..+++++||.++|++|+.. . ..+ ..+ ..+|+++|+..+|+.|
T Consensus 45 ~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l 124 (138)
T cd02122 45 YGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEI 124 (138)
T ss_pred CCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHH
Confidence 67987776 333 999999999 999999999999999999999999986 2 111 222 2459999999999999
Q ss_pred HHHHHhCCCCeEE
Q 004824 419 IDYIKKCDNPTGS 431 (728)
Q Consensus 419 ~~~~~~~~~~~~~ 431 (728)
++++..+.+.+++
T Consensus 125 ~~~l~~G~~Vtv~ 137 (138)
T cd02122 125 LELLERGISVTMV 137 (138)
T ss_pred HHHHHcCCcEEEe
Confidence 9999887665544
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=79.43 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=67.6
Q ss_pred CeeeEEEc---cCCCCCccCcc-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-cc--cc---cccCccEEE
Q 004824 341 SQVSLAFM---DACDSVTELKK-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LE--VY---IRSSFPAAF 409 (728)
Q Consensus 341 ~~~~lv~~---~~c~~~~~~~~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~--~~---~~~~~p~~~ 409 (728)
..+|++.. ..|.+..+.+. ++|||+|++ |.|.|.+|..+++.+||.|+|++|+... .. .. ...++|+++
T Consensus 20 ~~~~~~~~~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~ 99 (120)
T cd02129 20 TLLPLRNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVAL 99 (120)
T ss_pred cceeeecCCCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEE
Confidence 35666663 67998888765 999999999 9999999999999999999999999864 11 11 123459999
Q ss_pred eecccHHHHHHHHH
Q 004824 410 INVNDGQTIIDYIK 423 (728)
Q Consensus 410 i~~~~g~~l~~~~~ 423 (728)
|+..+|+.|++.+.
T Consensus 100 Is~~dG~~i~~~l~ 113 (120)
T cd02129 100 LSYKDMLDIQQTFG 113 (120)
T ss_pred EeHHHHHHHHHHhc
Confidence 99999999988775
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-06 Score=99.09 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=59.6
Q ss_pred ccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCC-cEEEeccccCCC-CCCC--hhhHHHHHHHHHHhCCcEEEE
Q 004824 210 IARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGV-DVLSLSLGLSLN-GIFL--EDDAIAVATFAAMEKGVLVVA 285 (728)
Q Consensus 210 ~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~-dVIN~SlG~~~~-~~~~--~~~~~~~~~~~a~~~Gi~vV~ 285 (728)
...-+||+|+|..+-+ . ......+..|+.+....=+ -+|-.||+.... .... .-+.+......|..+||.+++
T Consensus 287 ~s~A~AP~A~I~lvva--p-~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 287 WSHAMAPKANIDLVVA--P-NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhhccCccCceEEEEc--C-CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 3467999999998866 2 1222223333333222211 333356665201 1112 345556666788899999999
Q ss_pred ecCCCCCCCCc--------cccCCCceEEecc
Q 004824 286 SAGNDGPSYWT--------LINGAPWLLTVGA 309 (728)
Q Consensus 286 AAGN~g~~~~~--------~~~~ap~vitVga 309 (728)
|+|.+|....+ .+..+|++++||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999876643 3457899999998
|
|
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.6e-06 Score=79.70 Aligned_cols=81 Identities=23% Similarity=0.318 Sum_probs=64.1
Q ss_pred cCCCCCc--cCcc-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc--cccc------cccCccEEEeecccHH
Q 004824 349 DACDSVT--ELKK-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL--LEVY------IRSSFPAAFINVNDGQ 416 (728)
Q Consensus 349 ~~c~~~~--~~~~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~~~~------~~~~~p~~~i~~~~g~ 416 (728)
..|.+.. +... ++|||++|+ +.|.+.+|..+++++||.|+|++++... .... ....+|++.|+.++|+
T Consensus 31 ~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~ 110 (126)
T cd00538 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGE 110 (126)
T ss_pred EEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHH
Confidence 4676665 5555 999999999 9999999999999999999999998763 1111 1123499999999999
Q ss_pred HHHHHHHhCCCCe
Q 004824 417 TIIDYIKKCDNPT 429 (728)
Q Consensus 417 ~l~~~~~~~~~~~ 429 (728)
.|++|+.+..+.+
T Consensus 111 ~l~~~~~~~~~v~ 123 (126)
T cd00538 111 ALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHhcCCceE
Confidence 9999998755433
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-06 Score=79.22 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=64.5
Q ss_pred cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCcc-----c---ccc------ccCccEEEeecc
Q 004824 349 DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSALL-----E---VYI------RSSFPAAFINVN 413 (728)
Q Consensus 349 ~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~---~~~------~~~~p~~~i~~~ 413 (728)
..|.+......++|||+|++ |.|.|.+|..+++++||.++|++|+.... . +.. ...+|+++|+..
T Consensus 28 ~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~ 107 (126)
T cd02126 28 RACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSK 107 (126)
T ss_pred hcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHH
Confidence 67987655334999999999 99999999999999999999999876531 1 111 123499999999
Q ss_pred cHHHHHHHHHhCCCCeE
Q 004824 414 DGQTIIDYIKKCDNPTG 430 (728)
Q Consensus 414 ~g~~l~~~~~~~~~~~~ 430 (728)
+|+.|+..++.+...++
T Consensus 108 dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 108 EGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHhCCceEE
Confidence 99999999987655443
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-06 Score=78.68 Aligned_cols=87 Identities=16% Similarity=0.276 Sum_probs=67.8
Q ss_pred eeeEEEc---cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-cccc-----c--ccCccEEE
Q 004824 342 QVSLAFM---DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LEVY-----I--RSSFPAAF 409 (728)
Q Consensus 342 ~~~lv~~---~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~-----~--~~~~p~~~ 409 (728)
..+++.. ..|.+.. ..++|||+|++ |.|.|.+|..+++++||.++|++|+... ..+. . ...+|++.
T Consensus 39 ~~~lv~~~~~~gC~~~~--~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~ 116 (139)
T cd02132 39 KTRAVLANPLDCCSPST--SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVM 116 (139)
T ss_pred EEEEEECCcccccCCCC--cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEE
Confidence 4455542 6788654 35999999999 9999999999999999999999988764 2221 1 12459999
Q ss_pred eecccHHHHHHHHHhCCCCeE
Q 004824 410 INVNDGQTIIDYIKKCDNPTG 430 (728)
Q Consensus 410 i~~~~g~~l~~~~~~~~~~~~ 430 (728)
|+..+|+.|++.+..+...++
T Consensus 117 Is~~~G~~L~~~l~~g~~Vtv 137 (139)
T cd02132 117 IPQSAGDALNKSLDQGKKVEV 137 (139)
T ss_pred ecHHHHHHHHHHHHcCCcEEE
Confidence 999999999999987665443
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=74.10 Aligned_cols=80 Identities=25% Similarity=0.308 Sum_probs=61.3
Q ss_pred cCCCCCccCc-cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-ccccc-cc-CccEEEeecccHHHHHHHHH
Q 004824 349 DACDSVTELK-KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LEVYI-RS-SFPAAFINVNDGQTIIDYIK 423 (728)
Q Consensus 349 ~~c~~~~~~~-~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~~-~~-~~p~~~i~~~~g~~l~~~~~ 423 (728)
..|.+...+. +++|||+|++ |.|.|.+|..+++++||.++|++|+... ..... +. .+|.+.+ ..+|+.|++.++
T Consensus 42 ~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l~ 120 (129)
T cd02124 42 DACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDALA 120 (129)
T ss_pred ccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHHh
Confidence 6798765443 4999999999 9999999999999999999999998765 21112 22 2355555 999999999987
Q ss_pred hCCCCe
Q 004824 424 KCDNPT 429 (728)
Q Consensus 424 ~~~~~~ 429 (728)
.+...+
T Consensus 121 ~G~~vt 126 (129)
T cd02124 121 AGSNVT 126 (129)
T ss_pred cCCeEE
Confidence 665433
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.3e-06 Score=77.14 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=60.6
Q ss_pred eeEEEccCCCCCccCcc-CcceEEEEc-cCCc-----hhHHHHHHHHcCceEEEEecCC--Cc--ccccc----ccCccE
Q 004824 343 VSLAFMDACDSVTELKK-VINSIVVCR-EDSS-----ISSQIDNAVAAGVLGAVFISNS--AL--LEVYI----RSSFPA 407 (728)
Q Consensus 343 ~~lv~~~~c~~~~~~~~-~~gkiv~~~-g~~~-----~~~~~~~~~~~Ga~g~i~~n~~--~~--~~~~~----~~~~p~ 407 (728)
-++++...+. .++... ++|||+|++ |.|. |.+|..+++++||.|+|+||+. .. ..... +..+|+
T Consensus 38 g~lv~~g~~g-~d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~ 116 (139)
T cd04817 38 GSLYYCGTSG-GSYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPS 116 (139)
T ss_pred EEEEEccCCC-ccccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeE
Confidence 4566542211 134443 999999999 9999 9999999999999999999998 43 11222 224599
Q ss_pred EEeecccHHHHHHHHH
Q 004824 408 AFINVNDGQTIIDYIK 423 (728)
Q Consensus 408 ~~i~~~~g~~l~~~~~ 423 (728)
+.|+..+|+.|+..+.
T Consensus 117 v~is~~dG~~L~~~l~ 132 (139)
T cd04817 117 VSVDRADGQALLAALG 132 (139)
T ss_pred EEeeHHHHHHHHHHhc
Confidence 9999999999998874
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-05 Score=72.33 Aligned_cols=86 Identities=19% Similarity=0.095 Sum_probs=69.0
Q ss_pred CCeeeEEEccCCCCCccCcc-CcceEEEEc-cCC--chhHHHHHHHHcCceEEEEecCCCc-cc--c-c----c-ccCcc
Q 004824 340 PSQVSLAFMDACDSVTELKK-VINSIVVCR-EDS--SISSQIDNAVAAGVLGAVFISNSAL-LE--V-Y----I-RSSFP 406 (728)
Q Consensus 340 ~~~~~lv~~~~c~~~~~~~~-~~gkiv~~~-g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~-~~--~-~----~-~~~~p 406 (728)
..+.++|+...+...++.+. ++|||++++ +.+ .+.+|..++.++||.|+|++|+... .. . . . ...+|
T Consensus 22 ~~~~~lV~~g~G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP 101 (127)
T cd04819 22 EAKGEPVDAGYGLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIP 101 (127)
T ss_pred CeeEEEEEeCCCCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCC
Confidence 35788999877766666554 999999999 888 8899999999999999999987765 11 1 1 1 13459
Q ss_pred EEEeecccHHHHHHHHHhC
Q 004824 407 AAFINVNDGQTIIDYIKKC 425 (728)
Q Consensus 407 ~~~i~~~~g~~l~~~~~~~ 425 (728)
++.|+.+||+.|.+.++.+
T Consensus 102 ~v~Is~edg~~L~~~l~~g 120 (127)
T cd04819 102 AASVSGEDGLRLARVAERN 120 (127)
T ss_pred EEEEeHHHHHHHHHHHhcC
Confidence 9999999999999998764
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=74.05 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=63.9
Q ss_pred cCCCCCccC--c-----cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc--cccc---------c--ccCccE
Q 004824 349 DACDSVTEL--K-----KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL--LEVY---------I--RSSFPA 407 (728)
Q Consensus 349 ~~c~~~~~~--~-----~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~~~~---------~--~~~~p~ 407 (728)
..|.+.... + ...++|+|++ |.|.|.+|..+++++||.++|++|+... ..+. . +-.+|+
T Consensus 23 ~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~ 102 (127)
T cd02125 23 TGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPS 102 (127)
T ss_pred ccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeE
Confidence 578765442 1 2778999999 9999999999999999999999998764 1110 1 113599
Q ss_pred EEeecccHHHHHHHHHhCCCCeE
Q 004824 408 AFINVNDGQTIIDYIKKCDNPTG 430 (728)
Q Consensus 408 ~~i~~~~g~~l~~~~~~~~~~~~ 430 (728)
++|+..+|+.|++.+..+...++
T Consensus 103 v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 103 ALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EEECHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999987765544
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.9e-06 Score=74.03 Aligned_cols=76 Identities=12% Similarity=0.186 Sum_probs=60.2
Q ss_pred ccCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCcc---cccc---cc--CccEEEeecccHHHH
Q 004824 348 MDACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSALL---EVYI---RS--SFPAAFINVNDGQTI 418 (728)
Q Consensus 348 ~~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~---~~~~---~~--~~p~~~i~~~~g~~l 418 (728)
...|.+... ++++|||+|++ |.|.|.+|..+++++||.++|++|+.... .+.. .. .+|+++++..+|++|
T Consensus 27 ~~gC~~~~~-~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L 105 (117)
T cd04813 27 TDACSLQEH-AEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLL 105 (117)
T ss_pred CCCCCCCCc-CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHH
Confidence 378976621 33999999999 99999999999999999999999887641 1111 11 349999999999999
Q ss_pred HHHHHh
Q 004824 419 IDYIKK 424 (728)
Q Consensus 419 ~~~~~~ 424 (728)
+.++..
T Consensus 106 ~~l~~~ 111 (117)
T cd04813 106 SSLLPK 111 (117)
T ss_pred HHhccc
Confidence 988653
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.6e-05 Score=75.88 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=64.2
Q ss_pred cCCCCCccCc---c-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc--ccccc------ccCccEEEeecccH
Q 004824 349 DACDSVTELK---K-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL--LEVYI------RSSFPAAFINVNDG 415 (728)
Q Consensus 349 ~~c~~~~~~~---~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~~~~~------~~~~p~~~i~~~~g 415 (728)
..|.+....+ . +.|||++++ |.|.|.+|..+++++||.++|++|+... ..+.. .-++|+++|+..+|
T Consensus 51 ~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg 130 (153)
T cd02123 51 NACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKSTG 130 (153)
T ss_pred ccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHHH
Confidence 5898776543 4 999999999 9999999999999999999999998755 22222 12349999999999
Q ss_pred HHHHHHHHhCCC
Q 004824 416 QTIIDYIKKCDN 427 (728)
Q Consensus 416 ~~l~~~~~~~~~ 427 (728)
+.|+.++.....
T Consensus 131 ~~L~~~l~~~~~ 142 (153)
T cd02123 131 EILKKYASYEKG 142 (153)
T ss_pred HHHHHHHhcCCc
Confidence 999999876544
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00039 Score=67.58 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=64.4
Q ss_pred eeeEEEccCCCCCccC-----c-cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc--cc--------------
Q 004824 342 QVSLAFMDACDSVTEL-----K-KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL--LE-------------- 398 (728)
Q Consensus 342 ~~~lv~~~~c~~~~~~-----~-~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~~-------------- 398 (728)
+-++||...|...++. . +++|||+|++ |.|.+.+|..+|+++||+|+|+|++... ..
T Consensus 30 ~g~lVyvn~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~ 109 (183)
T cd02128 30 TGKLVYANYGRKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGT 109 (183)
T ss_pred EEEEEEcCCCCHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccC
Confidence 6688988777666553 3 3999999999 9999999999999999999999998421 00
Q ss_pred ---------------c-c----cccCccEEEeecccHHHHHHHHHh
Q 004824 399 ---------------V-Y----IRSSFPAAFINVNDGQTIIDYIKK 424 (728)
Q Consensus 399 ---------------~-~----~~~~~p~~~i~~~~g~~l~~~~~~ 424 (728)
. . .-..+|++-|+..+++.|++.+.-
T Consensus 110 GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 110 GDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred CCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 0 0 012348899999999999998753
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0024 Score=59.51 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=55.5
Q ss_pred CcceEEEEc-cCC------chhHH-------HHHHHHcCceEEEEecCCCc------cc-ccc---ccCccEEEeecccH
Q 004824 360 VINSIVVCR-EDS------SISSQ-------IDNAVAAGVLGAVFISNSAL------LE-VYI---RSSFPAAFINVNDG 415 (728)
Q Consensus 360 ~~gkiv~~~-g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~~------~~-~~~---~~~~p~~~i~~~~g 415 (728)
++||||+++ +.| .+..| ...++++||.|+|++|.... .. ... ...+|++.|+.+|+
T Consensus 38 v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ed~ 117 (134)
T cd04815 38 VKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVEDA 117 (134)
T ss_pred cCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEechhcH
Confidence 999999999 889 88888 79999999999999986422 11 111 12359999999999
Q ss_pred HHHHHHHHhCCCCeE
Q 004824 416 QTIIDYIKKCDNPTG 430 (728)
Q Consensus 416 ~~l~~~~~~~~~~~~ 430 (728)
..|.+.++.+...++
T Consensus 118 ~~L~r~l~~g~~v~~ 132 (134)
T cd04815 118 DMLERLAARGKPIRV 132 (134)
T ss_pred HHHHHHHhCCCCeEE
Confidence 999999887655443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.012 Score=59.32 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=48.1
Q ss_pred CeeeEEEccCCCCCccC-----c-cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc
Q 004824 341 SQVSLAFMDACDSVTEL-----K-KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL 396 (728)
Q Consensus 341 ~~~~lv~~~~c~~~~~~-----~-~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 396 (728)
.+.++||...|...++. . +++|||||++ |.+.+.+|..+|+.+||.|+|++++...
T Consensus 45 v~g~lVyvnyG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 45 VTAELVYANYGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred ceEEEEEcCCCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 47789999999877653 2 2999999999 9888899999999999999999998653
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0097 Score=55.61 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=44.7
Q ss_pred eeeEEEccCCCCCccC---cc--CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCC
Q 004824 342 QVSLAFMDACDSVTEL---KK--VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSA 395 (728)
Q Consensus 342 ~~~lv~~~~c~~~~~~---~~--~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 395 (728)
+-++||...+...++. .. ++|||+|++ |...+..|..+|+..||.|+|||.+..
T Consensus 16 tg~~VYvNyG~~eDf~~L~~~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 16 QAEVVDVQYGSVEDLRRIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred EEEEEEecCCCHHHHHHHHhCCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 5678887666655533 12 999999999 999999999999999999999999854
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.027 Score=52.75 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=43.8
Q ss_pred CeeeEEEccC------CCCCccCcc-CcceEEEEc-cCC------------------chhHHHHHHHHcCceEEEEecCC
Q 004824 341 SQVSLAFMDA------CDSVTELKK-VINSIVVCR-EDS------------------SISSQIDNAVAAGVLGAVFISNS 394 (728)
Q Consensus 341 ~~~~lv~~~~------c~~~~~~~~-~~gkiv~~~-g~~------------------~~~~~~~~~~~~Ga~g~i~~n~~ 394 (728)
...++|+.+. |...++... ++||||++. |.| .+..|..+++++||.|+|++++.
T Consensus 20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 4678888644 444455554 999999998 766 46789999999999999999987
Q ss_pred Cc
Q 004824 395 AL 396 (728)
Q Consensus 395 ~~ 396 (728)
..
T Consensus 100 ~~ 101 (142)
T cd04814 100 AP 101 (142)
T ss_pred Cc
Confidence 65
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.053 Score=50.45 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=42.9
Q ss_pred CeeeEEEccCC------CCCccCcc-CcceEEEEc-cCCc------------hhHHHHHHHHcCceEEEEecCCCc
Q 004824 341 SQVSLAFMDAC------DSVTELKK-VINSIVVCR-EDSS------------ISSQIDNAVAAGVLGAVFISNSAL 396 (728)
Q Consensus 341 ~~~~lv~~~~c------~~~~~~~~-~~gkiv~~~-g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~~ 396 (728)
.+-++||...+ ...++... ++|||||+. +.|. +..|..++.++||.|+|++++...
T Consensus 22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 46678876444 33444443 999999999 7653 678999999999999999998654
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.33 Score=42.62 Aligned_cols=81 Identities=16% Similarity=0.067 Sum_probs=59.0
Q ss_pred eeEEEEEEEEeCCCCCeEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEeCCCCcEEE
Q 004824 636 VVKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVR 715 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~~~v~ 715 (728)
...+.+.+|+|.+.....|++.......-.++++|..-.+. +|++.+++|+|.+.. ..+.+.+.|.+.- ....+.
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~-PG~~~~~~V~~~~~~--~~g~~~~~l~i~~--e~~~~~ 94 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLA-PGESVELEVTFSPTK--PLGDYEGSLVITT--EGGSFE 94 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEEC-CCCEEEEEEEEEeCC--CCceEEEEEEEEE--CCeEEE
Confidence 34556668999999999999876543344566677766666 899999999999532 2356789898887 345777
Q ss_pred eEEEEE
Q 004824 716 SPIVAT 721 (728)
Q Consensus 716 ~P~~~~ 721 (728)
+|+-+.
T Consensus 95 i~v~a~ 100 (102)
T PF14874_consen 95 IPVKAE 100 (102)
T ss_pred EEEEEE
Confidence 777654
|
|
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.063 Score=50.81 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=42.4
Q ss_pred CeeeEEEccCC------CCCccCcc-CcceEEEEc-cC------------------CchhHHHHHHHHcCceEEEEecCC
Q 004824 341 SQVSLAFMDAC------DSVTELKK-VINSIVVCR-ED------------------SSISSQIDNAVAAGVLGAVFISNS 394 (728)
Q Consensus 341 ~~~~lv~~~~c------~~~~~~~~-~~gkiv~~~-g~------------------~~~~~~~~~~~~~Ga~g~i~~n~~ 394 (728)
.+-++||...+ ....+... ++|||||+. +. |.+..|..++.+.||.|+|++++.
T Consensus 20 vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~ 99 (151)
T cd04822 20 VTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGP 99 (151)
T ss_pred ceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCC
Confidence 35678886544 33344443 999999996 42 567889999999999999999987
Q ss_pred Cc
Q 004824 395 AL 396 (728)
Q Consensus 395 ~~ 396 (728)
..
T Consensus 100 ~~ 101 (151)
T cd04822 100 NS 101 (151)
T ss_pred cc
Confidence 65
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.12 Score=43.13 Aligned_cols=59 Identities=20% Similarity=0.094 Sum_probs=38.2
Q ss_pred eeEEEEEEEEeCCCCC-eEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccC
Q 004824 636 VVKEFWRTVTNAEEVG-TAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLL 694 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 694 (728)
.+.+++.+|+|.|... ...++++..|.|-++...|..+.--++|++++++++|+++...
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 5788999999999654 4588888899999988888887644589999999999997644
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.052 Score=59.22 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=59.4
Q ss_pred CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc------ccccc--ccCccEEEeecccHHHHHHHHHhCCCCeE
Q 004824 360 VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL------LEVYI--RSSFPAAFINVNDGQTIIDYIKKCDNPTG 430 (728)
Q Consensus 360 ~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------~~~~~--~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 430 (728)
++||+++.. |.|.|.+|...++++||.+++++|+... ..... +-.+|++.+++++++.+.....++.+.++
T Consensus 94 l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~ 173 (541)
T KOG2442|consen 94 LSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVEL 173 (541)
T ss_pred ccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEE
Confidence 899999999 9999999999999999999999999554 11112 22349999999999999987666665555
Q ss_pred EEEe
Q 004824 431 SLQF 434 (728)
Q Consensus 431 ~i~~ 434 (728)
.+..
T Consensus 174 ~lYa 177 (541)
T KOG2442|consen 174 ALYA 177 (541)
T ss_pred EEEC
Confidence 5443
|
|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.12 Score=47.85 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=69.7
Q ss_pred CeeeEEEc---cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-cc------cccc-----cC
Q 004824 341 SQVSLAFM---DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LE------VYIR-----SS 404 (728)
Q Consensus 341 ~~~~lv~~---~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~------~~~~-----~~ 404 (728)
+.+++|.. ..|....-.-...|.|++++ |.|+|..|..+++++||..+|+...... .+ +..| ..
T Consensus 64 e~~~lV~adPp~aC~elrN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~An 143 (193)
T KOG3920|consen 64 ENLELVLADPPHACEELRNEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRAN 143 (193)
T ss_pred cCcceeecCChhHHHHHhhcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccC
Confidence 35566664 56765443333788999999 9999999999999999999999877655 21 2222 34
Q ss_pred ccEEEeecccHHHHHHHHHhCCCCeEEEEeee
Q 004824 405 FPAAFINVNDGQTIIDYIKKCDNPTGSLQFRK 436 (728)
Q Consensus 405 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 436 (728)
+|++++-..+|..++.-++.-..+-+.|..+-
T Consensus 144 iPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 144 IPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred CceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 59999999999887777766666666665543
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=91.94 E-value=1.4 Score=39.78 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=40.0
Q ss_pred eEEEEEEEEeCCCCCeEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccC
Q 004824 637 VKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLL 694 (728)
Q Consensus 637 ~~t~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 694 (728)
.=.++..|+|....+.+|++++..++|+++......+++. +|++..+.|.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~-~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVP-PGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEEC-CCCEEEEEEEEEECHHH
Confidence 3447778999999999999999998899996555778887 89999999999987544
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.69 Score=49.47 Aligned_cols=75 Identities=21% Similarity=0.347 Sum_probs=56.9
Q ss_pred cCCCCCccCc---c-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCccccc----cccCc--cEEEeecccHHH
Q 004824 349 DACDSVTELK---K-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSALLEVY----IRSSF--PAAFINVNDGQT 417 (728)
Q Consensus 349 ~~c~~~~~~~---~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----~~~~~--p~~~i~~~~g~~ 417 (728)
..|.+....+ + -...++++. |+|+|.+|+.+|+.+|..++|++|+....... ....+ +.++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 4676654422 2 677888998 99999999999999999999999977662111 12233 899999999999
Q ss_pred HHHHHH
Q 004824 418 IIDYIK 423 (728)
Q Consensus 418 l~~~~~ 423 (728)
|.+|..
T Consensus 143 l~~~~~ 148 (348)
T KOG4628|consen 143 LSSYAG 148 (348)
T ss_pred HHHhhc
Confidence 988743
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=89.96 E-value=2.4 Score=38.72 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=52.5
Q ss_pred eeEEEEEEEEeCCCCCeEEEEEEec----CCC--------------eE------EEEEeceEEEeccCeeEEEEEEEEec
Q 004824 636 VVKEFWRTVTNAEEVGTAYTAKLTG----IDG--------------LK------VYVEPRRLVFKQKYEKQSYKLTLEGP 691 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~ty~~~~~~----~~g--------------~~------v~v~p~~~~~~~~g~~~~~~vt~~~~ 691 (728)
.+++++.+|+|.++++.+|.+.+.. ..| +. |++ |..++++ ++++++++++++.|
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~-~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLP-PNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEEC-CCCEEEEEEEEEcC
Confidence 6788999999999999999988651 111 11 122 4457787 89999999999998
Q ss_pred ccCCCceEEEEEEEEe
Q 004824 692 KLLEKDVVYGSISWVD 707 (728)
Q Consensus 692 ~~~~~~~~~G~i~~~~ 707 (728)
...-.+.+-|-|.+..
T Consensus 105 ~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 105 KKAFDGIILGGIYFSE 120 (121)
T ss_pred CCCcCCEEEeeEEEEe
Confidence 7665678888888764
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.77 Score=43.85 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=39.8
Q ss_pred CeeeEEEccCCCCC------ccCcc-CcceEEEEc-cCCc-------------------hhHHHHHHHHcCceEEEEecC
Q 004824 341 SQVSLAFMDACDSV------TELKK-VINSIVVCR-EDSS-------------------ISSQIDNAVAAGVLGAVFISN 393 (728)
Q Consensus 341 ~~~~lv~~~~c~~~------~~~~~-~~gkiv~~~-g~~~-------------------~~~~~~~~~~~Ga~g~i~~n~ 393 (728)
...++||.+++... ++..- ++||||++. +... ...|...+.+.||.|+|++.+
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 46678887666432 22233 999999998 4332 224999999999999999987
Q ss_pred CCc
Q 004824 394 SAL 396 (728)
Q Consensus 394 ~~~ 396 (728)
...
T Consensus 102 ~~~ 104 (157)
T cd04821 102 TEP 104 (157)
T ss_pred CCc
Confidence 543
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.98 E-value=4 Score=45.00 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=59.0
Q ss_pred eeEEEEEEEEeCCCCCeE-EEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEe
Q 004824 636 VVKEFWRTVTNAEEVGTA-YTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVD 707 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~ 707 (728)
...++...+.|.|+.+.| -++++..|.|-++.|+|.++---++|+.+++++|+++|.....+-++=+|+-++
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 467788899999987655 678899999999999998776667999999999999987776666666666655
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=82.54 E-value=16 Score=32.98 Aligned_cols=67 Identities=19% Similarity=0.112 Sum_probs=45.2
Q ss_pred EEEEEEEEeCCCCCeEEEEEEec---CCC----eEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEE
Q 004824 638 KEFWRTVTNAEEVGTAYTAKLTG---IDG----LKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWV 706 (728)
Q Consensus 638 ~t~~rtvtn~g~~~~ty~~~~~~---~~g----~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~ 706 (728)
.+.+.+|+|.++.+..+.+.+.. ... -.+-++|..+.+. +|+++.+.| +.....+.+....=+|.++
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~-pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLE-PGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEE-TTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeC-CCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 34566899999988788887764 111 2577899999998 899999999 7643323333333445554
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 728 | ||||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-163 | ||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-99 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 4e-12 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 3e-10 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 2e-09 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 5e-09 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 1e-08 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 2e-08 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 2e-08 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 2e-08 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-08 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 2e-08 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 2e-08 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 3e-08 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 3e-08 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 3e-08 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 5e-08 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 6e-08 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 6e-08 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 6e-08 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 6e-08 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 9e-08 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 1e-07 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 1e-07 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 1e-07 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 1e-07 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 2e-07 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 2e-07 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 2e-07 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 3e-07 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 3e-07 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 3e-07 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 3e-07 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 6e-07 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 7e-07 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 7e-07 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 7e-07 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 7e-07 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 1e-06 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 2e-06 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 2e-06 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 2e-06 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 2e-06 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 2e-06 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 2e-06 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 2e-06 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 2e-06 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 2e-06 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 2e-06 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 6e-06 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 6e-06 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 1e-05 | ||
| 3lpd_A | 339 | Crystal Structure Of A Subtilisin-Like Protease Len | 2e-05 | ||
| 3lpc_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 2e-05 | ||
| 3lpa_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 2e-05 | ||
| 1tec_E | 279 | Crystallographic Refinement By Incorporation Of Mol | 4e-05 | ||
| 1thm_A | 279 | Crystal Structure Of Thermitase At 1.4 Angstroms Re | 5e-05 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 8e-05 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 1e-04 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 1e-04 | ||
| 2gko_A | 309 | S41 Psychrophilic Protease Length = 309 | 2e-04 |
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339 | Back alignment and structure |
|
| >pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular Dynamics. The Thermostable Serine Protease Thermitase Complexed With Eglin-C Length = 279 | Back alignment and structure |
|
| >pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms Resolution Length = 279 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|2GKO|A Chain A, S41 Psychrophilic Protease Length = 309 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 677 bits (1747), Expect = 0.0
Identities = 308/651 (47%), Positives = 432/651 (66%), Gaps = 14/651 (2%)
Query: 83 TTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMS 142
TTHTS+FL L+ SG WPAS G+ VI+ ++D+GIWPES SF D+GM ++P RWKG C
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 143 GVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSS 202
G QFN+S+CN+KLIGA +FNKG++AN+P + + MNS RD GHGTH +SI AGN+ KG S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 203 YFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGI 262
+FGYA G ARG+APRA +A+YK + G ++SD++AA+DQA+ DGVD++S+S G +
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIPL 180
Query: 263 FLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTL 322
+ +DAI++A+F AM KGVLV ASAGN GP +L NG+PW+L V +G DR F G+LTL
Sbjct: 181 Y--EDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238
Query: 323 GNGVQINFKSLYPGNSSPSQVSLAFM------DACDSVTELKKVINSIVVCREDSSISSQ 376
GNG++I SL+P + + + + + +++++ N+IV+C ++ S Q
Sbjct: 239 GNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQ 298
Query: 377 IDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRK 436
+ A + A+FIS + P +N +G+ +I+Y+K PT ++ F++
Sbjct: 299 MRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQE 358
Query: 437 TVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYS-N 495
T + TKPAP+V + S+RGP S I KPDILAPG L+LA++ P + + +L S +
Sbjct: 359 TYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTD 418
Query: 496 FNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFP 555
+ L SGTSMA PH AG+A +LKAAHP+WSP+AIRSA++TTA PLDNT IKD+ NN
Sbjct: 419 YILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNK-A 477
Query: 556 ASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIRIFTKSSQKCN--NRS 613
A+PLDMGAGH++PN+ALDPGLVYDAT +DY+ LLC++N+ EQ + +SS N N S
Sbjct: 478 ATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSNPS 537
Query: 614 LDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRL 673
DLNYPSFI ++ + + + F RTVTN + Y AKL + V P+ L
Sbjct: 538 ADLNYPSFIALYSIEGNFTLLEQK--FKRTVTNVGKGAATYKAKLKAPKNSTISVSPQIL 595
Query: 674 VFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVRSPIVATNLV 724
VFK K EKQSY LT+ + GSI+WV+ +G + VRSPIV + ++
Sbjct: 596 VFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPII 646
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 603 bits (1557), Expect = 0.0
Identities = 234/658 (35%), Positives = 350/658 (53%), Gaps = 53/658 (8%)
Query: 83 TTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMS 142
TT + +FLG S +++G++DTGIWPES SF DEG + PP+WKG C +
Sbjct: 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 143 GVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSS 202
F CN+K+IGAR ++ G P +N PRD +GHGTHT+S AAG V ++
Sbjct: 59 SNNFR---CNRKIIGARSYHIG----RPISPGDVNGPRDTNGHGTHTASTAAGGLVSQAN 111
Query: 203 YFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGI 262
+G G ARG P A +A YK W G +D++AA D A+ DGVD++SLS+G +
Sbjct: 112 LYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRH 171
Query: 263 FLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTL 322
+ DAIA+ +F A+E+G+L SAGN GP+++T + +PWLL+V A T+DR+F + +
Sbjct: 172 Y-FVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQI 230
Query: 323 GNGVQINFKSLYPGNS------SPSQVSLAFMDACDSV------TELKKVINSIVVCRED 370
GNG S+ ++ S + D S + IVVC +
Sbjct: 231 GNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVC--E 288
Query: 371 SSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTG 430
+S G G + SN+ + P++ ++ ND + YI +P
Sbjct: 289 ASFGPHEFFKSLDGAAGVLMTSNTR--DYADSYPLPSSVLDPNDLLATLRYIYSIRSPGA 346
Query: 431 SLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSG 490
++ F+ T I AP+V S+SSRGP + ++ KPDI PG +LA+W ++ V ++
Sbjct: 347 TI-FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRN 405
Query: 491 LLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDAS 550
+ FN++SGTSM+ PH+ G+A +K +P WSPAAI+SAL+TTASP++ +
Sbjct: 406 ---TLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFN------ 456
Query: 551 NNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIRIFTKSSQKCN 610
P + G+GH+NP KA+ PGLVYDA DY+K LC Y + +R T C
Sbjct: 457 ----PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACT 512
Query: 611 NRS----LDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTAKLTGIDGLKV 666
+ + DLNYPSF + + + F RT+T+ + Y A ++ GL +
Sbjct: 513 SGNTGRVWDLNYPSFGLSVS-----PSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTI 567
Query: 667 YVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVRSPIVATNLV 724
V P L F +++S+ LT+ G ++ VV S+ W DG + VRSPI T+LV
Sbjct: 568 SVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASLVWS--DGVHYVRSPITITSLV 621
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 451 bits (1160), Expect = e-146
Identities = 123/649 (18%), Positives = 219/649 (33%), Gaps = 87/649 (13%)
Query: 97 GAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNS----SLCN 152
+ G G ++ ++D G +++ K + K + + + N
Sbjct: 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVN 67
Query: 153 KKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIAR 212
K+ ++K HGTH S I +GN +
Sbjct: 68 DKVAYYHDYSKD------------GKTAVDQEHGTHVSGILSGN----APSETKEPYRLE 111
Query: 213 GIAPRACVAMYKAIWRHGV--YSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIA 270
G P A + + + +G+ Y+ + AI A+ G V+++S G + D
Sbjct: 112 GAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETK 171
Query: 271 VATFAAMEKGVLVVASAGNDG-------------PSYWTL--INGAPWLLTVGAGTIDRE 315
A A KGV +V SAGND P Y + A LTV + + D++
Sbjct: 172 KAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQ 231
Query: 316 FEGSLTLGNGVQINFKSLYPGNSSPS---QVSLAFMDACDSVTELKKVINSIVVC-REDS 371
++ + Q + + + A+ + + K V I + R D
Sbjct: 232 LTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDI 291
Query: 372 SISSQIDNAVAAGVLGAVFISNSA---LLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNP 428
+I A AG +G + N +E+ PAAFI+ DG + D
Sbjct: 292 DFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNP----QK 347
Query: 429 TGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQ 488
T + V+ T + +SS G + KPDI APG +L+S +
Sbjct: 348 TITFNATPKVLPTASGTKLSRFSSWGL--TADGNIKPDIAAPGQDILSSVAN-------- 397
Query: 489 SGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTA-SPLDNTLSHIK 547
+ + +SGTSM+ P VAG+ GLL+ + P S + A L ++ + +
Sbjct: 398 -----NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALY 452
Query: 548 DASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIRIFTKSSQ 607
D SP GAG ++ KA + T +D +N ++ T +
Sbjct: 453 DEDEKA-YFSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFE-VTVNVH 508
Query: 608 KCNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTAKLTGIDGLKVY 667
+++ +L Y + + + + + +V
Sbjct: 509 NKSDKPQELYYQATVQTDKVDGK---------HFALAPKVLYETSWQKITIPANSSKQVT 559
Query: 668 VEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVRS 716
V F + Q + G + + D + E+ S
Sbjct: 560 VPIDASRFSKDLLAQMKNGY----------FLEGFVRFKQDPTKEELMS 598
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 3e-35
Identities = 89/528 (16%), Positives = 145/528 (27%), Gaps = 169/528 (32%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
+ I ++D+G ++ L + G
Sbjct: 16 LSDSQ--AGNRTICIIDSGYDRS--------------------------HNDLNANNVTG 47
Query: 158 ARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
G P + + HGTH + A G+ G+ P
Sbjct: 48 TNNSGTG----------NWYQPGNNNAHGTHVAGTIAAI--------ANNEGVV-GVMPN 88
Query: 218 ACVAMY--KAIWRHGV-YSSDVVAAIDQAL-QDGVDVLSLSLGLSLNGIFLEDDAIAVAT 273
++ K G YSS +VAAID + G +V+++SLG S + +A+
Sbjct: 89 QNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTE-RNALN--- 144
Query: 274 FAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQI----- 328
GVL++A+AGN G S ++ +++V A + + + V+I
Sbjct: 145 -THYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGE 203
Query: 329 NFKSLYPGNSSPSQ-------------VSLAFMDACDSVTELKKVINSIVVCR------- 368
S V + IN+
Sbjct: 204 AILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVN 263
Query: 369 -----------------------EDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSF 405
+ AG G + SNSAL +
Sbjct: 264 GTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLV 323
Query: 406 PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKP 465
A + A + + G
Sbjct: 324 DANSDITV-----------------------PSVSVDRATGLALKAKLGQ--------ST 352
Query: 466 DILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSP 525
+ G+ ++ +GTSMATPHV+GVA L+ + HP+ S
Sbjct: 353 TVSNQGN---------------------QDYEYYNGTSMATPHVSGVATLVWSYHPECSA 391
Query: 526 AAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573
+ +R+AL TA L +N G G IN A
Sbjct: 392 SQVRAALNATADDLSVA------GRDNQT-------GYGMINAVAAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-24
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
+SSRGP KP+++APG+ ++A+ + Y+ GT+MATPH
Sbjct: 311 DFSSRGPTADN--RLKPEVVAPGNWIIAAR-ASGTSMGQPINDYYTA---APGTAMATPH 364
Query: 509 VAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINP 568
VAG+A LL AHP W+P +++AL+ TA + + + GAG +N
Sbjct: 365 VAGIAALLLQAHPSWTPDKVKTALIETADIVKPD------------EIADIAYGAGRVNA 412
Query: 569 NKALDPGLVYDATAEDY 585
KA T Y
Sbjct: 413 YKAAYYDNYAKLTFTGY 429
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 4e-23
Identities = 71/307 (23%), Positives = 115/307 (37%), Gaps = 68/307 (22%)
Query: 27 SSKATATSSTISSKLVYTYANSIHGFSATLTVSELETLK-----------KLPGYISSTP 75
KA + +K+ Y Y + I + + V +L + +L G
Sbjct: 48 KEKAVEILDFLGAKIKYNY-HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQE 106
Query: 76 DRPLAVHTTHTSEFLGLSSLS--GAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVP 133
D + V + + W G G+ IG++DTGI
Sbjct: 107 DYVVKVAVETEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG------- 159
Query: 134 PRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIA 193
K+IG F + +P D +GHGTH +SIA
Sbjct: 160 --------------------KVIGWVDF----VNGK-------TTPYDDNGHGTHVASIA 188
Query: 194 AGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV-YSSDVVAAID----QALQDGV 248
AG G +G+AP A + K + G SD++ +D + G+
Sbjct: 189 AGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGI 241
Query: 249 DVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLIN--GAPWLLT 306
V++LSLG S D+++ A A + G++VV +AGN GP+ +T+ + A ++T
Sbjct: 242 KVINLSLGSS--QSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVIT 299
Query: 307 VGAGTID 313
VGA
Sbjct: 300 VGAVDKY 306
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 49/216 (22%), Positives = 79/216 (36%), Gaps = 61/216 (28%)
Query: 359 KVIN-SIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417
VIN S+ +++ + +D AVA+GV+ N +P + +V
Sbjct: 120 DVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSV----- 174
Query: 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLAS 477
I V + S+SS GP + D++APG + ++
Sbjct: 175 ----I--------------AVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQST 208
Query: 478 WSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537
+ + +GTSMA+PHVAG A L+ + HP+W+ +RS+L T +
Sbjct: 209 L-------------PGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
Query: 538 PLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573
L G G IN A
Sbjct: 256 KL----------------GDSFYYGKGLINVQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 48/217 (22%), Positives = 77/217 (35%), Gaps = 58/217 (26%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
G V + ++D+GI G G S
Sbjct: 16 LHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG--------------GASMVPS-------- 53
Query: 158 ARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
N +D + HGTH + A + G+ G+AP
Sbjct: 54 -----------------ETNPFQDNNSHGTHVAGTVAAL--------NNSIGVL-GVAPS 87
Query: 218 ACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAA 276
A + K + G S ++ I+ A+ + +DV+++SLG L A+ A
Sbjct: 88 ASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAAL-KAAVD----KA 142
Query: 277 MEKGVLVVASAGNDGPSYWTLING----APWLLTVGA 309
+ GV+VVA+AGN+G S + G P ++ VGA
Sbjct: 143 VASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGA 179
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 3e-23
Identities = 51/215 (23%), Positives = 82/215 (38%), Gaps = 61/215 (28%)
Query: 359 KVIN-SIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417
VIN S+ +++ +DNA A GV+ NS +PA + +V
Sbjct: 119 DVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSV----- 173
Query: 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLAS 477
I V S+SS G + +++APG+ V ++
Sbjct: 174 ----I--------------AVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYST 207
Query: 478 WSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537
+ + + ++GTSMA+PHVAG A L+ + HP+ S + +R+ L +TA+
Sbjct: 208 Y-------------PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
Query: 538 PLDNTLSHIKDASNNNFPASPLDMGAGHINPNKAL 572
L S G G IN A
Sbjct: 255 YL----------------GSSFYYGKGLINVEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 6e-22
Identities = 52/217 (23%), Positives = 78/217 (35%), Gaps = 59/217 (27%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
G V + ++DTGI + G G
Sbjct: 16 VQAQGFKGANVKVAVLDTGIQASHPDLNVVG----------------------------G 47
Query: 158 ARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
A F DG+GHGTH + A TG+ G+AP
Sbjct: 48 ASFVAGE------------AYNTDGNGHGTHVAGTVAAL--------DNTTGVL-GVAPS 86
Query: 218 ACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAA 276
+ K + G S +V+ I+ A +G+DV+++SLG + + A+ A
Sbjct: 87 VSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAM-KQAVD----NA 141
Query: 277 MEKGVLVVASAGNDGPSYWTLING----APWLLTVGA 309
+GV+VVA+AGN G S T G ++ VGA
Sbjct: 142 YARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGA 178
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 5e-23
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 17/107 (15%)
Query: 440 GTKPAPMVDSYSSRGPFLSCPNI----PKPDILAPGSLVLASWSPISSVAEVQSGLLYSN 495
V YSSRG + + +I APGS V ++W
Sbjct: 196 QQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN-------------GG 242
Query: 496 FNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNT 542
+N +SGTSMATPHV+G+A + A +P S +RS L A +D
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIK 289
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 7e-20
Identities = 58/226 (25%), Positives = 85/226 (37%), Gaps = 54/226 (23%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
++ G G+ I ++DTG+ + +
Sbjct: 18 TLTSTTGGSGINIAVLDTGVNTSHPDLVN---------------------------NVEQ 50
Query: 158 ARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
+ F N NS D +GHGTH + A + GS G G+AP
Sbjct: 51 CKDFTGATTPIN-------NSCTDRNGHGTHVAGTALAD--GGSDQAGIY-----GVAPD 96
Query: 218 ACVAMYKAIWRHGV-YSSDVVAAIDQALQDGV-----DVLSLSLGLSLNGIFLEDDAIAV 271
A + YK + G YS D+ AAI A ++S+SLG S N + I+
Sbjct: 97 ADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSAN-----NSLISS 151
Query: 272 ATFAAMEKGVLVVASAGNDGPSYWTLIN--GAPWLLTVGAGTIDRE 315
A A KGVL+VA+AGN G S T+ P + V A ++
Sbjct: 152 AVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ 197
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-22
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 31/151 (20%)
Query: 441 TKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMS 500
K V +++SR P + + APG + + Q + S LM+
Sbjct: 413 EKLPGNVYTWTSRDPCIDG--GQGVTVCAPGGAIASVP---------QFTM--SKSQLMN 459
Query: 501 GTSMATPHVAGVAGL----LKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPA 556
GTSMA PHVAG L LK + ++SP +I+ A+ TA+ L
Sbjct: 460 GTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY--------------V 505
Query: 557 SPLDMGAGHINPNKALDPGLVYDATAEDYIK 587
P G G +N KA + + + ++ ++
Sbjct: 506 DPFAQGHGLLNVEKAFEHLTEHRQSKDNMLR 536
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 89.1 bits (220), Expect = 2e-18
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 22/147 (14%)
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG---VYS 233
S HGTH SSIA+GN + + G+AP A +
Sbjct: 264 EVVGMSSPHGTHVSSIASGN--------HSSRDVD-GVAPNAKIVSMTIGDGRLGSMETG 314
Query: 234 SDVVAAIDQALQ-----DGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAG 288
+ +V A+ + ++ +DV+++S G + + GV+ VASAG
Sbjct: 315 TALVRAMTKVMELCRDGRRIDVINMSYG-EHANWSNSGRIGELMNEVVNKYGVVWVASAG 373
Query: 289 NDGPSYWTLINGA----PWLLTVGAGT 311
N GP+ T+ P L+ VGA
Sbjct: 374 NHGPALCTVGTPPDISQPSLIGVGAYV 400
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 2e-22
Identities = 55/215 (25%), Positives = 82/215 (38%), Gaps = 65/215 (30%)
Query: 359 KVIN-SIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417
V N S+ +++ +++A + GVL NS + S+PA + N
Sbjct: 118 HVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSI----SYPARYANA----- 168
Query: 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLAS 477
+ V T S+S G L DI+APG V ++
Sbjct: 169 ----M--------------AVGATDQNNNRASFSQYGAGL--------DIVAPGVNVQST 202
Query: 478 WSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537
+ S + ++GTSMATPHVAG A L+K +P WS IR+ L TA+
Sbjct: 203 Y-------------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTAT 249
Query: 538 PLDNTLSHIKDASNNNFPASPLDMGAGHINPNKAL 572
L S N + G+G +N A
Sbjct: 250 SL---------GSTNLY-------GSGLVNAEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 50/221 (22%), Positives = 78/221 (35%), Gaps = 72/221 (32%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
A G GV + ++DTGI
Sbjct: 16 AHNRGLTGSGVKVAVLDTGI---------------------------------------- 35
Query: 158 ARFFNKGLIANNPKLKVRM--------NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATG 209
+ +P L +R S +DG+GHGTH + A + G
Sbjct: 36 ---------STHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAAL--------NNSIG 78
Query: 210 IARGIAPRACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDA 268
+ G+AP A + K + G S + ++ A +G+ V +LSLG L + A
Sbjct: 79 VL-GVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATL-EQA 136
Query: 269 IAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGA 309
+ +A +GVLVVA++GN G + + VGA
Sbjct: 137 VN----SATSRGVLVVAASGNSGAGSISYPARYANAMAVGA 173
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 7e-22
Identities = 58/216 (26%), Positives = 84/216 (38%), Gaps = 52/216 (24%)
Query: 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKK 154
AW + G I ++DTG+ + L K
Sbjct: 20 TDYAWDVTKGSSGQEIAVIDTGVDYT--------------------------HPDLDGKV 53
Query: 155 LIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGI 214
+ G F + P D + HGTH + IAA TGIA G+
Sbjct: 54 IKGYDFVDND------------YDPMDLNNHGTHVAGIAAAETNNA-------TGIA-GM 93
Query: 215 APRACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVAT 273
AP + +A+ R+G SD+ AI A G +V++LSLG + LE +A+
Sbjct: 94 APNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLE-NAVN--- 149
Query: 274 FAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGA 309
A KG +VVA+AGN+G S ++ VGA
Sbjct: 150 -YAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGA 184
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 9e-19
Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 70/218 (32%)
Query: 359 KVIN-SIVVCREDSSISSQIDNAVAAGVLGAVFIS--NSALLEVYIRSSFPAAFINVNDG 415
+VIN S+ +++ + ++ A G + V + N+ PA++ NV
Sbjct: 129 EVINLSLGCDCHTTTLENAVNYAWNKGSV--VVAAAGNNGSSTT----FEPASYENV--- 179
Query: 416 QTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVL 475
I V + S+S+ G ++ D++APG ++
Sbjct: 180 ------I--------------AVGAVDQYDRLASFSNYGTWV--------DVVAPGVDIV 211
Query: 476 ASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTT 535
++ + + MSGTSMA+PHVAG+A LL + + IR A+ T
Sbjct: 212 STI-------------TGNRYAYMSGTSMASPHVAGLAALLASQGR--NNIEIRQAIEQT 256
Query: 536 ASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573
A + + G IN A+
Sbjct: 257 ADKI---------------SGTGTYFKYGRINSYNAVT 279
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 9e-22
Identities = 53/303 (17%), Positives = 84/303 (27%), Gaps = 84/303 (27%)
Query: 26 ESSKATATSSTISSKLVYTYANSIHGFSATLTVSELETLKKLPGYISST-PDRPLAVHTT 84
++ S +VY +H +T L I + +
Sbjct: 53 NTATFNKLVKKKSLNVVYNIPE-LHVAQIKMTKMHANALANYKNDIKYINATCSTCITSE 111
Query: 85 HTSEFLGLSSLSG-------------AWPASNYGKGVIIGLVDTGI-----------WPE 120
T + SL ++ I ++DTG+ +
Sbjct: 112 KTIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNFSTD 171
Query: 121 SQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPR 180
S++ G R + +
Sbjct: 172 SKNLVPLN----------------------------GFRGTEPEETGDV-------HDVN 196
Query: 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAI 240
D GHGT S + N + G+AP MY+ V AI
Sbjct: 197 DRKGHGTMVSGQTSAN-----------GKLI-GVAPNNKFTMYRVFGSKKTELLWVSKAI 244
Query: 241 DQALQDGVDVLSLSLG-----------LSLNGIFLEDDAIAVATFAAMEKGVLVVASAGN 289
QA DG V+++S+G +E DA+ A A +K +VVA+AGN
Sbjct: 245 VQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGN 304
Query: 290 DGP 292
DG
Sbjct: 305 DGI 307
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 2e-17
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 31/135 (22%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAE---------VQSGLLYSNFNLM 499
+S+ G DI APG + + +
Sbjct: 351 EFSNFGM-------NYTDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYIYQ 403
Query: 500 SGTSMATPHVAGVAGLLKAA-HPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASP 558
+GT++ATP V+G L+ H + P L + + + + +
Sbjct: 404 AGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKN-------NKPFSRY---- 452
Query: 559 LDMGAGHINPNKALD 573
G G ++ KAL+
Sbjct: 453 ---GHGELDVYKALN 464
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 5e-21
Identities = 55/216 (25%), Positives = 82/216 (37%), Gaps = 53/216 (24%)
Query: 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKK 154
AW + G G I +VDTG+ + L K
Sbjct: 20 APQAWDIAE-GSGAKIAIVDTGVQSN--------------------------HPDLAGKV 52
Query: 155 LIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGI 214
+ G F + ++P++G+GHGTH + IAA TGIA G
Sbjct: 53 VGGWDFVDND------------STPQNGNGHGTHCAGIAAAVTNNS-------TGIA-GT 92
Query: 215 APRACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVAT 273
AP+A + + + G + V I A G V+SLSLG ++ L+ A+
Sbjct: 93 APKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQ-QAVN--- 148
Query: 274 FAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGA 309
A KG +VVA+AGN G + + V +
Sbjct: 149 -YAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVAS 183
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 50/216 (23%), Positives = 80/216 (37%), Gaps = 66/216 (30%)
Query: 359 KVIN-SIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417
KVI+ S+ +S + ++ A G + N+ ++PA + N
Sbjct: 128 KVISLSLGGTVGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAP----NYPAYYSNA----- 178
Query: 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLAS 477
I V T S+S+ G ++ D+ APGS + ++
Sbjct: 179 ----I--------------AVASTDQNDNKSSFSTYGSWV--------DVAAPGSSIYST 212
Query: 478 WSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537
+ S + +SGTSMATPHVAGVAGLL + S + IR+A+ TA
Sbjct: 213 Y-------------PTSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTAD 257
Query: 538 PLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573
+ + G +N KA+
Sbjct: 258 KI---------------SGTGTYWAKGRVNAYKAVQ 278
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 3e-20
Identities = 44/265 (16%), Positives = 80/265 (30%), Gaps = 35/265 (13%)
Query: 59 SELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDTGIW 118
E+E+ + S+ + H + + L+ + + I ++D
Sbjct: 3 DEIESAGVSASEVESSATKQKVALHPHDLDE-RIPGLADLHNQTLGDPQITIVIIDGDPD 61
Query: 119 PESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRM-- 176
F ++KV P W ++GL + +
Sbjct: 62 YTLSCFEGAEVSKVFPYWHE------PAEPITPEDYAAFQSIRDQGLKGKEKEEALEAVI 115
Query: 177 ---NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG--- 230
+ H H +S G + + GIAP V
Sbjct: 116 PDTKDRIVLNDHACHVTSTIVGQE---------HSPVF-GIAPNCRVINMPQDAVIRGNY 165
Query: 231 ---VYSSDVVAAIDQALQDGVDVLSLSLG---LSLNGIFLEDDAIAVATFAAMEKGVLVV 284
+ ++ AID AL+ G +++ + + G + AI + VL+V
Sbjct: 166 DDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK----KCQDNNVLIV 221
Query: 285 ASAGNDGPSYWTLINGAPWLLTVGA 309
+ GN+ W L P L VGA
Sbjct: 222 SPTGNNSNESWCLPAVLPGTLAVGA 246
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 8e-19
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 32/129 (24%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
+S+ G N K ILAPG +L + P + ++GTSMA P
Sbjct: 255 HFSNWGG-----NNTKEGILAPGEEILGAQ-PCTEEPVR-----------LTGTSMAAPV 297
Query: 509 VAGVAGLLKAAH----PDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAG 564
+ G++ LL + A+R+AL+ TA P D P G
Sbjct: 298 MTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCD-----------PEVVEEPERCLRG 346
Query: 565 HINPNKALD 573
+N A+
Sbjct: 347 FVNIPGAMK 355
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 7e-20
Identities = 54/328 (16%), Positives = 99/328 (30%), Gaps = 83/328 (25%)
Query: 23 SVSESSKATATSSTISSKLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVH 82
SV ++ I +VY + I + + + LKK+PG D +
Sbjct: 8 SVDKAKFNPHEVLGIGGHIVYQF-KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLL 66
Query: 83 TTHTSEFLGLS-------------SLSGAWPASNY-GKGVIIGLVDTGIWPESQSFSDEG 128
+ G + W ++ + + ++DTG+ +
Sbjct: 67 GKPSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYD-------- 118
Query: 129 MAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTH 188
+ L + D +GHGTH
Sbjct: 119 ------------------HPDLAANIAWCVSTLRGKVSTKL-------RDCADQNGHGTH 153
Query: 189 TSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV-YSSDVVAAIDQALQD- 246
A G+ G+AP + + + G SD+ I+QA+
Sbjct: 154 VIGTIAAL--------NNDIGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 204
Query: 247 -------------------GVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASA 287
+V+S+SLG + +L D I A G+++VA++
Sbjct: 205 DGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYL-YDMII----QAYNAGIVIVAAS 259
Query: 288 GNDGPSYWTLINGAPWLLTVGAGTIDRE 315
GN+G + P ++ VGA +
Sbjct: 260 GNEGAPSPSYPAAYPEVIAVGAIDSNDN 287
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 4e-16
Identities = 49/229 (21%), Positives = 78/229 (34%), Gaps = 77/229 (33%)
Query: 359 KVIN-SIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417
+VI+ S+ +DS + I A AG++ N S+PAA+ V
Sbjct: 226 EVISMSLGGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSP----SYPAAYPEV----- 276
Query: 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLAS 477
I V + S+S+R P ++ APG +L++
Sbjct: 277 ----I--------------AVGAIDSNDNIASFSNRQP----------EVSAPGVDILST 308
Query: 478 WSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAH-------------PDWS 524
+ ++ + GT+MATPHV+GV L++AA+ D S
Sbjct: 309 Y-------------PDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDIS 355
Query: 525 PAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573
+R L TA L D G G + A+
Sbjct: 356 KNTVRGILHITADDL-------------GPTGWDADYGYGVVRAALAVQ 391
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 1e-19
Identities = 33/141 (23%), Positives = 48/141 (34%), Gaps = 26/141 (18%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYS-----NFNLMSGTS 503
+SSR + + APG +L++ S+ ++ GTS
Sbjct: 330 GFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTS 381
Query: 504 MATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGA 563
MA PHV GV +L P+ P IR L TA + D G
Sbjct: 382 MAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNG-------------NGWDHDTGY 428
Query: 564 GHINPNKALDPGLVYDATAED 584
G + + AL L E+
Sbjct: 429 GLVKLDAALQGPLPTQGGVEE 449
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 4e-15
Identities = 43/220 (19%), Positives = 64/220 (29%), Gaps = 55/220 (25%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
G +I+ +VDTG+ + L + + G
Sbjct: 146 QLWEEASGTNIIVAVVDTGVDGT--------------------------HPDLEGQVIAG 179
Query: 158 ARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
R + G GTH + A GI G+AP
Sbjct: 180 YRPAFDEELPAGT-------DSSYGGSAGTHVAGTIAAK--------KDGKGIV-GVAPG 223
Query: 218 ACVAMYKAIWRHG-------VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIA 270
A + V V A I A G V++ S G +++ A
Sbjct: 224 AKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKE-AFD 282
Query: 271 VATFAAMEKGVLVVASAGNDGPSYWTLINGA-PWLLTVGA 309
AME GV++V SAGN+ P ++ V A
Sbjct: 283 ----YAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAA 318
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 1e-19
Identities = 50/239 (20%), Positives = 84/239 (35%), Gaps = 52/239 (21%)
Query: 98 AWPASNY-GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLI 156
A + G+G I+ + DTG+ S ++G K+
Sbjct: 13 AQSSYGLYGQGQIVAVADTGLDTGRNDSSM------HEAFRG---------------KIT 51
Query: 157 GARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAP 216
+ N+ D +GHGTH + GN GS+ +G+AP
Sbjct: 52 ALYALGRT------------NNANDTNGHGTHVAGSVLGN---GST--------NKGMAP 88
Query: 217 RACVAMYKAIWRHGVYS---SDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVAT 273
+A + + G S++ QA G + + S G ++NG + D
Sbjct: 89 QANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDD- 147
Query: 274 FAAMEKGVLVVASAGNDGPSYWTLIN--GAPWLLTVGAGTIDREFEGSLTLGNGVQINF 330
+ + ++ +AGN+GP+ T+ A +TVGA R GS F
Sbjct: 148 -YVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVAQF 205
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 4e-19
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 447 VDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMAT 506
V +SSRGP KPD++APG+ +L++ S ++ + + S + M GTSMAT
Sbjct: 202 VAQFSSRGPTKDG--RIKPDVMAPGTFILSARSSLAPDSSFWANH-DSKYAYMGGTSMAT 258
Query: 507 PHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHI 566
P VAG L+ + +L+ A L + I N + G G +
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAA--LIAGAADIGLGYPNG------NQGWGRV 310
Query: 567 NPNKALDPGLVYDATA 582
+K+L+ V ++++
Sbjct: 311 TLDKSLNVAYVNESSS 326
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 3e-19
Identities = 34/222 (15%), Positives = 64/222 (28%), Gaps = 45/222 (20%)
Query: 359 KVINSIVVCREDSSISSQIDNAV-AAGVLGAVFIS---NSAL---LEVYIRSSFPAAFIN 411
K+IN + +S S + + ++ N + +PAA+
Sbjct: 145 KIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHP 204
Query: 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPG 471
V+ D + + +L + + S G DI APG
Sbjct: 205 VSSVNKKQDPVIRV----AALAQYRKGETPVLHGGGITGSRFGN-------NWVDIAAPG 253
Query: 472 SLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSA 531
+ + SGTS AT V+GV + + +P + ++
Sbjct: 254 QNIT-------------FLRPDAKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRT 300
Query: 532 LVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573
L+ +A + +N KA+
Sbjct: 301 LLESADKYPSL--------------VDKVTEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 1e-17
Identities = 36/272 (13%), Positives = 75/272 (27%), Gaps = 80/272 (29%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
++ V++ +VD+G V F L + +
Sbjct: 36 TMSLTDKNTPVVVSVVDSG---------------------------VAFIGGLSDSEFAK 68
Query: 158 ARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
F G HGT +S+ A GI G+ P
Sbjct: 69 FSFTQDGSPFPV-------KKSEALYIHGTAMASLIASR-----------YGIY-GVYPH 109
Query: 218 ACVAMYKAIWRHG----VYSSDVVAAIDQALQDGVDVLSLSLGLS--LNGIFLEDDAIAV 271
A ++ + I + + + + + ++++S G + +
Sbjct: 110 ALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR- 168
Query: 272 ATFAAMEKGVLVVASAGNDG----------PSY-------WTLINGAPWLLTVGAGTIDR 314
L+VA+ GNDG + ++ ++ V A + +
Sbjct: 169 ---MGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAA--LAQ 223
Query: 315 EFEGSLTLGNGVQINFKSLYPGNSSPSQVSLA 346
+G + +G I + V +A
Sbjct: 224 YRKGETPVLHGGGITG-----SRFGNNWVDIA 250
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 90.8 bits (225), Expect = 4e-19
Identities = 51/311 (16%), Positives = 93/311 (29%), Gaps = 81/311 (26%)
Query: 23 SVSESSKATATSSTISSKLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVH 82
+ +A A +K+++ + + GF ++ LE KLP D V
Sbjct: 93 RTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSS--VF 150
Query: 83 TTHTSEFLGLSSLSGAWPASNY------GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRW 136
L ++ ++ G V + L+DT I + + EG V
Sbjct: 151 AQSIPW--NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREI--EGRVMVTDFE 206
Query: 137 KGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGN 196
G +F+ HGTH + + +G
Sbjct: 207 NVPEEDGTRFH-----------------------------RQASKCDSHGTHLAGVVSGR 237
Query: 197 YVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVD------ 249
G+A A + + + G S + ++ + +
Sbjct: 238 DA--------------GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPL 283
Query: 250 VLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDG-------PSYWTLINGAP 302
V+ L L + + + A GV++V +AGN P+ AP
Sbjct: 284 VVLLPLAGGYSRVL--NAACQ----RLARAGVVLVTAAGNFRDDACLYSPA------SAP 331
Query: 303 WLLTVGAGTID 313
++TVGA
Sbjct: 332 EVITVGATNAQ 342
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 6e-15
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 15/147 (10%)
Query: 466 DILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSP 525
D+ APG ++ + S + F SGTS A HVAG+A ++ +A P+ +
Sbjct: 360 DLFAPGEDIIGASS--------DCS---TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 526 AAIRSALVTTASP----LDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDAT 581
A +R L+ ++ + + N A P T
Sbjct: 409 AELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHSGPT 468
Query: 582 AEDYIKLLCAMNYKPEQIRIFTKSSQK 608
CA + + F++S ++
Sbjct: 469 RMATAIARCAPDEELLSCSSFSRSGKR 495
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 4e-19
Identities = 49/230 (21%), Positives = 81/230 (35%), Gaps = 60/230 (26%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
W AS G G IIG++DTG + ++ ++IG
Sbjct: 33 VWRASAKGAGQIIGVIDTGCQVDHPDLAE---------------------------RIIG 65
Query: 158 ARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
+ + D +GHGTH + A +G+ G+AP+
Sbjct: 66 GVNLTTDYGGDE-------TNFSDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPK 109
Query: 218 ACVAMYKAIWRHGV-YSSDVVAAIDQALQD------GVDVLSLSLGLSLNGIFLEDDAIA 270
A + + KA+ G + AI A+ + ++++SLG + L DA+
Sbjct: 110 ADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEEL-HDAVK 168
Query: 271 VATFAAMEKGVLVVASAGNDGPSYWTLIN-----GAPWLLTVGAGTIDRE 315
A+ V VV +AGN+G ++ VGA D
Sbjct: 169 ----YAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLR 214
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 5e-18
Identities = 40/224 (17%), Positives = 72/224 (32%), Gaps = 68/224 (30%)
Query: 359 KVIN-SIVVCREDSSISSQIDNAVAAGVLGAVFISNSAL-LEVYIRSSFPAAFINVNDGQ 416
++I S+ + + + AV+ V N E ++PAA+ V
Sbjct: 148 RIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEV---- 203
Query: 417 TIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLA 476
I V + +++ + DI+APG + +
Sbjct: 204 -----I--------------AVGAVDFDLRLSDFTNTNEEI--------DIVAPGVGIKS 236
Query: 477 SWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPD-----WSPAAIRSA 531
++ L S + +SGT+MA PHVAG L+ D S I +
Sbjct: 237 TY-------------LDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQ 283
Query: 532 LVTTASPLDNTLSHIKDASNNNFPASPLDMGAGH--INPNKALD 573
LV A+P+ + G G ++ + +
Sbjct: 284 LVRRATPI---------------GFTAQAEGNGFLTLDLVERIT 312
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 9e-18
Identities = 42/216 (19%), Positives = 69/216 (31%), Gaps = 37/216 (17%)
Query: 95 LSGAWPASNYGKGVIIGLVDTGIW--PESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCN 152
W G+ V++ +VDTGI + + G + G +
Sbjct: 21 ADKVWDMGFTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEG 80
Query: 153 KKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIAR 212
+ D S HG+H + A G+A
Sbjct: 81 DWFDNWACGGRPDPRKER---------SDSSWHGSHVAGTIAAVTNNR-------IGVA- 123
Query: 213 GIAPRACVAMYKAIWRHGVYSSDVVAAIDQA----------LQDGVDVLSLSLGLSLNGI 262
G+A A V +A+ R G Y SD+ + A ++ V+++SLG
Sbjct: 124 GVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCS 183
Query: 263 FLEDDAIAVATFAAMEKGVLVVASAGNDG----PSY 294
+ I A G LVV +AGN+ ++
Sbjct: 184 YNAQTMID----RATRLGALVVVAAGNENQNASNTW 215
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 32/129 (24%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
S+S+ G + D+ APG +L S+V + ++ M+GTSMATPH
Sbjct: 236 SFSNYGVDV--------DLAAPGQDIL------STVDSGTRRPVSDAYSFMAGTSMATPH 281
Query: 509 VAGVAGLLKAA----HPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAG 564
V+GVA L+ +A + + +PA ++ LV+T SP + +G+G
Sbjct: 282 VSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN--------------GRLDRALGSG 327
Query: 565 HINPNKALD 573
++ A++
Sbjct: 328 IVDAEAAVN 336
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 23/103 (22%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
S+S+ G + D+ APGS + ++W + +SGTSMATPH
Sbjct: 187 SFSNWGSCV--------DLFAPGSQIKSAWYD-------------GGYKTISGTSMATPH 225
Query: 509 VAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASN 551
VAGVA L + +P + L + AS N +S + +N
Sbjct: 226 VAGVAALYLQENNGLTPLQLTGLLNSRASE--NKVSDTRGTTN 266
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 44/229 (19%), Positives = 75/229 (32%), Gaps = 74/229 (32%)
Query: 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKK 154
L + A+ G GV ++DTG+ + F G +
Sbjct: 18 LDRNYNANFDGFGVTAYVIDTGVNNNHEEF--GGRSV----------------------- 52
Query: 155 LIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGI 214
G F + D +GHGTH + G+ G+
Sbjct: 53 -SGYDFVDND------------ADSSDCNGHGTHVAGTIGGSQY--------------GV 85
Query: 215 APRACVAMYKAIWRHGV-YSSDVVAAIDQALQDGV--DVLSLSLGLSLNGIFLEDDAIAV 271
A + + + G +S V++ +D Q+ V ++SLG + D A+
Sbjct: 86 AKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTAL--DSAVQ- 142
Query: 272 ATFAAMEKGVLVVASAGNDG-------PSYWTLINGAPWLLTVGAGTID 313
A++ GV + +AGN P+ P +TVG+ T
Sbjct: 143 ---GAIQSGVSFMLAAGNSNADACNTSPA------RVPSGVTVGSTTSS 182
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 49/229 (21%), Positives = 78/229 (34%), Gaps = 77/229 (33%)
Query: 359 KVIN-SIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417
+VI+ S+ +DS + I A AG++ N S+PAA+ V
Sbjct: 151 EVISMSLGGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSP----SYPAAYPEV----- 201
Query: 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLAS 477
I V + S+S+R P ++ APG +L++
Sbjct: 202 ----I--------------AVGAIDSNDNIASFSNRQP----------EVSAPGVDILST 233
Query: 478 WSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAH-------------PDWS 524
+ ++ + GT+MATPHV+GV L++AA+ D S
Sbjct: 234 Y-------------PDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDIS 280
Query: 525 PAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573
+R L TA L D G G + A+
Sbjct: 281 KNTVRGILHITADDLGP-------------TGWDADYGYGVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 41/234 (17%), Positives = 74/234 (31%), Gaps = 69/234 (29%)
Query: 98 AWPASNY-GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLI 156
W ++ + + ++DTG+ + + L
Sbjct: 20 VWSITDGSVSVIQVAVLDTGVDYD--------------------------HPDLAANIAW 53
Query: 157 GARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAP 216
+ D +GHGTH A G+ G+AP
Sbjct: 54 CVSTLRGKVSTKL-------RDCADQNGHGTHVIGTIAAL--------NNDIGVV-GVAP 97
Query: 217 RACVAMYKAIWRHGV-YSSDVVAAIDQALQD--------------------GVDVLSLSL 255
+ + + G SD+ I+QA+ +V+S+SL
Sbjct: 98 GVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSL 157
Query: 256 GLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGA 309
G + +L D I A G+++VA++GN+G + P ++ VGA
Sbjct: 158 GGPADDSYL-YDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 206
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 21/104 (20%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
S+S+ G L DI APGS + +SW +S S N +SGTSMA+PH
Sbjct: 189 SFSNYGTCL--------DIYAPGSSITSSW--YTS---------NSATNTISGTSMASPH 229
Query: 509 VAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNN 552
VAGVA L +P+ SPA + + L T A+ + ++ K S N
Sbjct: 230 VAGVAALYLDENPNLSPAQVTNLLKTRATA--DKVTDAKTGSPN 271
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 50/229 (21%), Positives = 76/229 (33%), Gaps = 74/229 (32%)
Query: 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKK 154
L + G GV ++DTG+ F G A
Sbjct: 20 LDNNYHTDYDGSGVTAFVIDTGVLNTHNEF--GGRAS----------------------- 54
Query: 155 LIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGI 214
G F + D +GHGTH + GS+Y G+
Sbjct: 55 -SGYDFIDND------------YDATDCNGHGTHVAGTIG-----GSTY---------GV 87
Query: 215 APRACVAMYKAIWRHGV-YSSDVVAAIDQALQDGV--DVLSLSLGLSLNGIFLEDDAIAV 271
A V + + G +S V+A I+ + V ++SLG + DDA+
Sbjct: 88 AKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQAT--DDAVN- 144
Query: 272 ATFAAMEKGVLVVASAGNDG-------PSYWTLINGAPWLLTVGAGTID 313
AA+ G+ V +AGND P+ A +TVG+ T +
Sbjct: 145 ---AAVAAGITFVVAAGNDNSNACNYSPA------RAADAITVGSTTSN 184
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 8e-16
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 21/104 (20%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
S+S+ G + D+ APG+ + ++W +S + ++GTSMATPH
Sbjct: 187 SFSNYGSCV--------DLFAPGASIPSAW--YTS---------DTATQTLNGTSMATPH 227
Query: 509 VAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNN 552
VAGVA L +P +PA++ SA++ A+ LS I S N
Sbjct: 228 VAGVAALYLEQNPSATPASVASAILNGATT--GRLSGIGSGSPN 269
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 36/147 (24%)
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV-YSSD 235
+ +D +GHGTH + G +Y G+A + + + +G +S
Sbjct: 62 GNGQDCNGHGTHVAGTIG-----GVTY---------GVAKAVNLYAVRVLDCNGSGSTSG 107
Query: 236 VVAAIDQALQDGVD--VLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDG-- 291
V+A +D ++ V ++SLG ++ D+A+ ++ GV+ +AGND
Sbjct: 108 VIAGVDWVTRNHRRPAVANMSLGGGVSTAL--DNAVK----NSIAAGVVYAVAAGNDNAN 161
Query: 292 -----PSYWTLINGAPWLLTVGAGTID 313
P+ LTVGA T
Sbjct: 162 ACNYSPA------RVAEALTVGATTSS 182
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 1e-15
Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 15/147 (10%)
Query: 466 DILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSP 525
D+ APG ++ + + F SGTS A HVAG+A ++ +A P+ +
Sbjct: 208 DLFAPGEDIIGAS--SDC---------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 526 AAIRSALVTTASP----LDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDAT 581
A +R L+ ++ + + N A P T
Sbjct: 257 AELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHSGPT 316
Query: 582 AEDYIKLLCAMNYKPEQIRIFTKSSQK 608
CA + + F++S ++
Sbjct: 317 RMATAIARCAPDEELLSCSSFSRSGKR 343
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 40/243 (16%), Positives = 71/243 (29%), Gaps = 77/243 (31%)
Query: 91 GLSSLSGAWPASNY------GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGV 144
L ++ ++ G V + L+DT I + + EG V G
Sbjct: 5 NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREI--EGRVMVTDFENVPEEDGT 62
Query: 145 QFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYF 204
+F+ HGTH + + +G
Sbjct: 63 RFH-----------------------------RQASKCDSHGTHLAGVVSGRDA------ 87
Query: 205 GYATGIARGIAPRACVAMYKAIWRHGV-YSSDVVAAIDQALQD------GVDVLSLSLGL 257
G+A A + + + G S + ++ + G V+ L L
Sbjct: 88 --------GVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAG 139
Query: 258 SLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDG-------PSYWTLINGAPWLLTVGAG 310
+ + + A GV++V +AGN P+ AP ++TVGA
Sbjct: 140 GYSRVL--NAACQ----RLARAGVVLVTAAGNFRDDACLYSPA------SAPEVITVGAT 187
Query: 311 TID 313
Sbjct: 188 NAQ 190
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 7e-14
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
++S+ G + DI APG+ + ++W N +SGTSMATPH
Sbjct: 192 TFSNYGRVV--------DIFAPGTSITSTWI-------------GGRTNTISGTSMATPH 230
Query: 509 VAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNN 552
+AG+A L S A+ + T ++ N L+ I + N
Sbjct: 231 IAGLAAYLFGLEGG-SAGAMCGRIQTLSTK--NVLTSIPSGTVN 271
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 9e-11
Identities = 36/152 (23%), Positives = 54/152 (35%), Gaps = 41/152 (26%)
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV-YSSD 235
++ RDG GHGTH + G+A + + K + G S+
Sbjct: 62 STARDGHGHGTHCAGTIGSKTW--------------GVAKKVSIFGVKVLDDSGSGSLSN 107
Query: 236 VVAAIDQALQDGVD-------VLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAG 288
++A +D D V S+SLG + + A A GV V +AG
Sbjct: 108 IIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAAL--NQAAA----RLQSSGVFVAVAAG 161
Query: 289 NDG-------PSYWTLINGAPWLLTVGAGTID 313
ND P+ P + TVGA +
Sbjct: 162 NDNRDAANTSPA------SEPTVCTVGATDSN 187
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 449 SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPH 508
S+S+ G L DI PG+ +L++W + +SGTSMATPH
Sbjct: 191 SFSNYGSVL--------DIFGPGTDILSTWIG-------------GSTRSISGTSMATPH 229
Query: 509 VAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNN 552
VAG+A L + A+ + TA+ LS+I + N
Sbjct: 230 VAGLAAYLMTLGKT-TAASACRYIADTANK--GDLSNIPFGTVN 270
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 41/152 (26%)
Query: 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV-YSSD 235
S RDG+GHGTH + G+A + + K + +G S
Sbjct: 61 YSSRDGNGHGTHCAGTVGSRTY--------------GVAKKTQLFGVKVLDDNGSGQYST 106
Query: 236 VVAAIDQALQDGVD-------VLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAG 288
++A +D D + V SLSLG + + A A GV+V +AG
Sbjct: 107 IIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSV--NSAAA----RLQSSGVMVAVAAG 160
Query: 289 NDG-------PSYWTLINGAPWLLTVGAGTID 313
N+ P+ P + TVGA
Sbjct: 161 NNNADARNYSPA------SEPSVCTVGASDRY 186
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 6e-09
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Query: 471 GSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRS 530
+++ ++S S S + N GTS A P AGV LL A+P+ + ++
Sbjct: 240 SAVMAVTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQY 299
Query: 531 ALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDP 574
+ +A L+ S S G G I+ +K ++
Sbjct: 300 LSILSAVGLEKNADGDWRDSAMGKKYSH-RYGFGKIDAHKLIEM 342
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 3e-08
Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 56/257 (21%)
Query: 97 GAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLI 156
W + G GV+ +VD G+ E++ D N
Sbjct: 45 DLWYNNITGAGVVAAIVDDGLDYENEDLKD-------------------------NFCAE 79
Query: 157 GARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAP 216
G+ FN N P HGT + A K + F G+
Sbjct: 80 GSWDFNDN--TNLP------KPRLSDDYHGTRCAGEIAA---KKGNNFCGV-----GVGY 123
Query: 217 RACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAV----- 271
A ++ + + + + D A++ L D D+ S S G + +G L+ + V
Sbjct: 124 NAKISGIRIL-SGDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALV 181
Query: 272 --ATFAAMEKGVLVVASAGNDG-----PSYWTLINGAPWLLTVGAGTIDREFEGSLTLGN 324
T KG + V ++GN G +Y N + + +T+GA +
Sbjct: 182 KGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTN-SIYSITIGAIDHKDLHPPYSEGCS 240
Query: 325 GVQINFKSLYPGNSSPS 341
V S G S
Sbjct: 241 AVMAVTYSSGSGEYIHS 257
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 3e-08
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 3/103 (2%)
Query: 472 SLVLASWSPISSVAEVQSGLLYSN-FNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRS 530
+L S + ++ + L +GTS + P AG+ L A+ + + ++
Sbjct: 229 TLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQH 288
Query: 531 ALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573
+V T+ P + G G ++ +
Sbjct: 289 LVVQTSKPAHLNADDWATNGVGRKVSHS--YGYGLLDAGAMVA 329
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 7e-06
Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 53/227 (23%)
Query: 97 GAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLI 156
AW G G+++ ++D GI +
Sbjct: 29 EAWAQGFTGHGIVVSILDDGIEKNHPDLAG---------------------------NYD 61
Query: 157 GARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAP 216
F+ +P+ + + + + HGT + A G G+A
Sbjct: 62 PGASFDVNDQDPDPQPR---YTQMNDNRHGTRCAGEVAAVANNG-------VCGV-GVAY 110
Query: 217 RACVAMYKAIWRHGVYSSDVVAAIDQAL-QDGVDVLSLSLGLSLNGIFLEDDAIAV---- 271
A + + +D V A L + + + S S G +G ++ A
Sbjct: 111 NARIG---GVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAF 167
Query: 272 ---ATFAAMEKGVLVVASAGNDGPSY----WTLINGAPWLLTVGAGT 311
+ G + V ++GN G + + + L++ + T
Sbjct: 168 FRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 7e-08
Identities = 86/632 (13%), Positives = 177/632 (28%), Gaps = 199/632 (31%)
Query: 17 YLFMLCSVSESSKATATSSTISSKLVYTYANSIHGFSATLTVSELETLKKLPGYISS-TP 75
Y F++ + + + + + + N F+ VS L+ KL + P
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELRP 149
Query: 76 DRPLAVHTTHTSEFLGLSSLSGAWPASNYGKGVIIGLV--DTGIWPESQSFSDEGMAKVP 133
+ + + G+ G+ GK + V + Q D +
Sbjct: 150 AKNVLID--------GVL---GS------GKTWVALDVCLSYKV----QCKMDFKIF--- 185
Query: 134 PRW--KGECMSG---VQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTH 188
W C S ++ L + I + ++ ++N KL R++S +
Sbjct: 186 --WLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKL--RIHSIQA------- 232
Query: 189 TSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAID---QAL- 244
+K Y + + + V ++ A + + L
Sbjct: 233 ----ELRRLLKSKPY------------ENCLL-----VLLN-VQNAKAWNAFNLSCKILL 270
Query: 245 --QDG--VDVLS------LSLGLSLNGIFLEDDAIAV-ATFAAMEKGVL-VVASAGNDGP 292
+ D LS +SL D+ ++ + L N P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTN--P 327
Query: 293 SYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACD 352
++I + G T D ++ +N L ++ + SL ++
Sbjct: 328 RRLSII-AE--SIRDGLATWDN-WK---------HVNCDKL----TTIIESSLNVLEP-- 368
Query: 353 SVTELKKVINSIVVCREDSSISSQIDNAVAAGVLG--------------AVFISNSALLE 398
E +K+ + + V + I + +L + +L+E
Sbjct: 369 --AEYRKMFDRLSVFPPSAHIPTI--------LLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 399 VYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLS 458
+ + I++ ++ K +N ++++ D Y+ F
Sbjct: 419 ---KQPKEST-ISIPSIY--LELKVKLEN---EYALHRSIV--------DHYNIPKTF-- 459
Query: 459 CPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKA 518
+ P L YS+ G + L +
Sbjct: 460 DSDDLIPPYL--------------------DQYFYSHI----GHHLKNIEHPERMTLFRM 495
Query: 519 AHPD--WSPAAIR--SALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDP 574
D + IR S + + NTL +K +I N DP
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-------------YICDN---DP 539
Query: 575 GLVYDATAEDYIKLLCAMNYKPEQIRIFTKSS 606
Y+ + L K E+ I +K +
Sbjct: 540 --KYERLVNAILDFL----PKIEENLICSKYT 565
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 728 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.9 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.94 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.59 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.31 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.2 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 97.99 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 97.63 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 96.68 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.66 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 95.85 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 95.13 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 94.63 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 94.48 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.45 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 85.47 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 80.8 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-125 Score=1092.83 Aligned_cols=628 Identities=49% Similarity=0.817 Sum_probs=572.4
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeecc
Q 004824 83 TTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFN 162 (728)
Q Consensus 83 ~~~s~~~~g~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~ 162 (728)
|+++|+|+|+.+...+|..+++|+||+|||||||||++||+|.+.+++++|.+|+|.|+.+.+|+...||+|++++++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 57899999998778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHH
Q 004824 163 KGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQ 242 (728)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~ 242 (728)
++++....+...+..+++|..||||||||||||+.+++.+++|++.|.+.|+||+|+|++||+|+..|+..+++++||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai~~ 160 (649)
T 3i6s_A 81 KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQ 160 (649)
T ss_dssp HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHHHHHHHH
T ss_pred CcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHHHHHHHH
Confidence 87754433334455678999999999999999999988889999999999999999999999999988999999999999
Q ss_pred HHHCCCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEc
Q 004824 243 ALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTL 322 (728)
Q Consensus 243 a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~ 322 (728)
|+++|+||||||||. ...++..+.+.+++++|.++|++||+||||+|+...++++.+||+|+|||+++||.|...+.+
T Consensus 161 A~~~gvdVIn~SlG~--~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~l 238 (649)
T 3i6s_A 161 AVADGVDMISISYGY--RFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238 (649)
T ss_dssp HHHTTCSEEEECCCC--CSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEE
T ss_pred HHHcCCCEEEeCCcc--CCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEe
Confidence 999999999999999 566778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeeeecCCCCCCCCeeeEEEc---cCCCCCccCcc-C--cceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCC
Q 004824 323 GNGVQINFKSLYPGNSSPSQVSLAFM---DACDSVTELKK-V--INSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSA 395 (728)
Q Consensus 323 ~~g~~~~g~s~~~~~~~~~~~~lv~~---~~c~~~~~~~~-~--~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 395 (728)
+|++.+.|.+++........+|+++. ..|.+..+++. + +||||+|+ |.|.+.+|..+++++|+.|+|++|+.
T Consensus 239 gng~~~~g~sl~~~~~~~~~~plv~~~~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~- 317 (649)
T 3i6s_A 239 GNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDP- 317 (649)
T ss_dssp TTSCEEEEECCCSSCBCEEEEEEECCTTTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCG-
T ss_pred CCCcEEeeeecccCcccCcceeeEecccccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCc-
Confidence 99999999999988766678999995 58999888876 7 99999999 99999999999999999999999987
Q ss_pred ccccccccCc-cEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCce
Q 004824 396 LLEVYIRSSF-PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLV 474 (728)
Q Consensus 396 ~~~~~~~~~~-p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 474 (728)
.....+.+. |+++|+..+|+.|++|++++.+++++|.+..+..+....+.+++||||||+.+.+++|||||+|||++|
T Consensus 318 -~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~I 396 (649)
T 3i6s_A 318 -GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLI 396 (649)
T ss_dssp -GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCCEEEECSSE
T ss_pred -cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCeEEeCCCCe
Confidence 233445555 999999999999999999999999999999999988899999999999999988889999999999999
Q ss_pred eeccCCCCCccccccCc-ccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCC
Q 004824 475 LASWSPISSVAEVQSGL-LYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNN 553 (728)
Q Consensus 475 ~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~ 553 (728)
+++|+..........+. +...|..+||||||||||||+||||||+||+|+|++||++||+||+++++.+.++.+... .
T Consensus 397 lsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~~~~~-~ 475 (649)
T 3i6s_A 397 LAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDN-N 475 (649)
T ss_dssp EEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCEETTT-S
T ss_pred EeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCccccccc-C
Confidence 99999865554444333 447899999999999999999999999999999999999999999999999999887643 6
Q ss_pred CCCCCCccCCCccCccccCCCCceecCChhhHHHHHHhcCCCccceeeccccccc--cCCCCCCCCCCceeeec-cCCCC
Q 004824 554 FPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIRIFTKSSQK--CNNRSLDLNYPSFITFF-NDYDS 630 (728)
Q Consensus 554 ~~~~~~~~G~G~in~~~Al~~~lv~~~~~~dy~~~lc~~~~~~~~~~~~~~~~~~--c~~~~~~ln~psi~~~~-~~~~~ 630 (728)
.++++++||+|+||+.+|++||||||+..+||++|||++||+..+|+.|++.+.. |+..+.+||||||++.+ +.
T Consensus 476 ~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~~~~~lNyPs~~~~~~~~--- 552 (649)
T 3i6s_A 476 KAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSNPSADLNYPSFIALYSIE--- 552 (649)
T ss_dssp SBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCCCCCCCCCSSEEEEECCS---
T ss_pred CcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCCchhhcCCCcEEeecccC---
Confidence 7889999999999999999999999999999999999999999999999988777 98767899999999987 42
Q ss_pred CCCCcee-----EEEEEEEEeCCCCCeEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEE
Q 004824 631 SSDEKVV-----KEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISW 705 (728)
Q Consensus 631 ~~~~~~~-----~t~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~ 705 (728)
.+ +||+|||||||+..++|+++++.|.|++|+|+|++|+|.+.+|+++|+|||+......+.|.||+|+|
T Consensus 553 -----~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~fg~l~w 627 (649)
T 3i6s_A 553 -----GNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITW 627 (649)
T ss_dssp -----SCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCEEEEEE
T ss_pred -----CCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEEEEEEE
Confidence 23 89999999999989999999999999999999999999989999999999998654456789999999
Q ss_pred EeCCCCcEEEeEEEEEee
Q 004824 706 VDDDGRYEVRSPIVATNL 723 (728)
Q Consensus 706 ~~~~~~~~v~~P~~~~~~ 723 (728)
++++|+|.||+||+|++.
T Consensus 628 ~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 628 VEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EETTSCCEEEEEEEEEEC
T ss_pred EcCCCCeEEEEeEEEEEc
Confidence 996689999999999875
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-112 Score=982.90 Aligned_cols=602 Identities=39% Similarity=0.655 Sum_probs=506.4
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeecc
Q 004824 83 TTHTSEFLGLSSLSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFN 162 (728)
Q Consensus 83 ~~~s~~~~g~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~ 162 (728)
++++|+||||+ ..+|.+..+|+||+|||||||||++||+|.++++++++.+|+|.|+.+.+|. ||+|++++++|.
T Consensus 1 tt~s~~flGl~--~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~---~n~k~ig~~~~~ 75 (621)
T 3vta_A 1 TTRSWDFLGFP--LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYH 75 (621)
T ss_dssp CCSHHHHTTCC--TTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCC---CCSSEEEEEECC
T ss_pred CCCChhHcCCC--ccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcc---cCcceeeeeecc
Confidence 57899999995 4689999999999999999999999999999999999999999999999886 999999999998
Q ss_pred ccccccCCCCccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHH
Q 004824 163 KGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQ 242 (728)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~ 242 (728)
.+.... ..+..+++|.+||||||||||||+.+.+.+.+|++.|.++|+||+|+|++||+|++.||..+++++||++
T Consensus 76 ~~~~~~----~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~~~ 151 (621)
T 3vta_A 76 IGRPIS----PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDD 151 (621)
T ss_dssp CSSSCC----TTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHHHH
T ss_pred cCCccC----CCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHHHH
Confidence 765322 2344578899999999999999999888888888889999999999999999999999999999999999
Q ss_pred HHHCCCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEc
Q 004824 243 ALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTL 322 (728)
Q Consensus 243 a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~ 322 (728)
|+++|+||||||||+. ....++.+++++++++|.++||+||+||||+|+...++++.+||+++|++++.++.|...+.+
T Consensus 152 a~~~g~dVin~SlG~~-~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~ 230 (621)
T 3vta_A 152 AIADGVDIISLSVGGA-NPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQI 230 (621)
T ss_dssp HHHHTCSEEEECCCCC-CGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEE
T ss_pred HHHhCCCEEEecCCCC-CCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEe
Confidence 9999999999999984 445567788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeeeecCCCCCCCCeeeEEEc-------------cCCCCCccCcc-CcceEEEEccCCchhHHHHHHHHcCceEE
Q 004824 323 GNGVQINFKSLYPGNSSPSQVSLAFM-------------DACDSVTELKK-VINSIVVCREDSSISSQIDNAVAAGVLGA 388 (728)
Q Consensus 323 ~~g~~~~g~s~~~~~~~~~~~~lv~~-------------~~c~~~~~~~~-~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~ 388 (728)
+++..+.+.+++... ...+++++. ..|.+..+++. ++|||++|+ +.+..+.......|+.++
T Consensus 231 ~~~~~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~--~~~~~~~~~~~~~Ga~gv 306 (621)
T 3vta_A 231 GNGQSFQGVSINTFD--NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCE--ASFGPHEFFKSLDGAAGV 306 (621)
T ss_dssp TTSCEEEEBCCCCSC--CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECS--SCCCHHHHHHHHTTCSEE
T ss_pred ccCceeeeeecccCC--CcccccccccccccccccccccccccccccccccccceEEEEe--cCCChhHHhhhhcceeEE
Confidence 999999998876544 245666653 67888888887 999999998 224456778888999999
Q ss_pred EEecCCCccccccccC-ccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcE
Q 004824 389 VFISNSALLEVYIRSS-FPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDI 467 (728)
Q Consensus 389 i~~n~~~~~~~~~~~~-~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI 467 (728)
|++++... ..+.+ +|...++..++..|+.|+..+..+.+.+....+ ......+.++.||||||+....+++||||
T Consensus 307 i~~~~~~~---~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~-~~~~~~~~va~FSSrGP~~~~~~ilKPDI 382 (621)
T 3vta_A 307 LMTSNTRD---YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTT-ILNASAPVVVSFSSRGPNRATKDVIKPDI 382 (621)
T ss_dssp EEECSCCS---SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEE-EECTTCCCBCTTSCCCSCTTCTTSCSCCE
T ss_pred EEEecCCC---cccccccceEEECHHHHHHHHHHHhccCCcceEEecceE-eccCCCCceeeecCCCCCCCCCCeecccc
Confidence 99987654 12233 499999999999999999999988888755444 34567889999999999987778899999
Q ss_pred EeCCCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccc
Q 004824 468 LAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIK 547 (728)
Q Consensus 468 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~ 547 (728)
+|||++|+|+|+....... ......|..+||||||||||||+||||||+||+|+|++||++||+||++++..
T Consensus 383 ~APG~~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~----- 454 (621)
T 3vta_A 383 SGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNAR----- 454 (621)
T ss_dssp EEECSSEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTT-----
T ss_pred ccCCcceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCccccc-----
Confidence 9999999999986543322 22347899999999999999999999999999999999999999999988654
Q ss_pred cCCCCCCCCCCCccCCCccCccccCCCCceecCChhhHHHHHHhcCCCccceeeccccccccCCC----CCCCCCCceee
Q 004824 548 DASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIRIFTKSSQKCNNR----SLDLNYPSFIT 623 (728)
Q Consensus 548 d~~~~~~~~~~~~~G~G~in~~~Al~~~lv~~~~~~dy~~~lc~~~~~~~~~~~~~~~~~~c~~~----~~~ln~psi~~ 623 (728)
..++.+++||+|+||+.+|++||||||+..+||+.|||+++|+..+++.+++....|+.. ..+||||||++
T Consensus 455 -----~~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~~v 529 (621)
T 3vta_A 455 -----FNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGL 529 (621)
T ss_dssp -----TCTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGGSCCSSEEE
T ss_pred -----CCCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcccccccccEEE
Confidence 345678899999999999999999999999999999999999999999999887888653 46999999999
Q ss_pred eccCCCCCCCCceeEEEEEEEEeCCCCCeEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEE
Q 004824 624 FFNDYDSSSDEKVVKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSI 703 (728)
Q Consensus 624 ~~~~~~~~~~~~~~~t~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i 703 (728)
.+.. .. ..+++|+|||||||....||+++++.|.|++|+|+|++|+|.+.+|+++|+|||+.. .++.++||+|
T Consensus 530 ~~~~---~~--~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~~~g~l 602 (621)
T 3vta_A 530 SVSP---SQ--TFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASL 602 (621)
T ss_dssp ECCS---SC--CEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSEEEEEE
T ss_pred EccC---CC--ceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec--CCCceEEEEE
Confidence 7542 12 478999999999999999999999999999999999999999889999999999863 4678999999
Q ss_pred EEEeCCCCcEEEeEEEEEeeC
Q 004824 704 SWVDDDGRYEVRSPIVATNLV 724 (728)
Q Consensus 704 ~~~~~~~~~~v~~P~~~~~~~ 724 (728)
+|++ |+|.||+||+|+..+
T Consensus 603 ~w~d--~~h~Vr~Pi~v~~~i 621 (621)
T 3vta_A 603 VWSD--GVHYVRSPITITSLV 621 (621)
T ss_dssp EEEC--SSCCCEEEEEEECC-
T ss_pred EEEc--CCEEEEeCEEEEEeC
Confidence 9998 999999999998753
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-83 Score=770.42 Aligned_cols=536 Identities=23% Similarity=0.284 Sum_probs=421.5
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcc----------CcccCCceeeeeeecccc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQF----------NSSLCNKKLIGARFFNKG 164 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f----------~~~~~n~kiig~~~~~~~ 164 (728)
++.+|.++++|+||+|||||||||++||+|.+. ..|++.|..+..| ...+||+|++++++|.++
T Consensus 6 ~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~ 79 (926)
T 1xf1_A 6 VKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKD 79 (926)
T ss_dssp CHHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCC
T ss_pred cHHHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccC
Confidence 366899999999999999999999999999853 4677766544333 134799999999998764
Q ss_pred ccccCCCCccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC--CChHHHHHHHHH
Q 004824 165 LIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG--VYSSDVVAAIDQ 242 (728)
Q Consensus 165 ~~~~~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g--~~~~~i~~ai~~ 242 (728)
. ...|..||||||||||||+.+.+.+. .+.+.||||+|+|++||+|+..+ +..+++++||+|
T Consensus 80 ~------------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~ 143 (926)
T 1xf1_A 80 G------------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRD 143 (926)
T ss_dssp S------------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHH
T ss_pred C------------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHH
Confidence 2 12288999999999999997654332 24469999999999999998876 556789999999
Q ss_pred HHHCCCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-------------Cccc--cCCCceEEe
Q 004824 243 ALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY-------------WTLI--NGAPWLLTV 307 (728)
Q Consensus 243 a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-------------~~~~--~~ap~vitV 307 (728)
|+++|+||||||||........+.+.+..++..|.++||+||+||||+|+.. .++. ..+||+|+|
T Consensus 144 Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitV 223 (926)
T 1xf1_A 144 AINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTV 223 (926)
T ss_dssp HHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEE
T ss_pred HHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEE
Confidence 9999999999999984112344567888899999999999999999999632 2233 348999999
Q ss_pred ccccccceeeeEEEc-CCCcEEeeeecCCCC--CCCCeeeEEEc-cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHH
Q 004824 308 GAGTIDREFEGSLTL-GNGVQINFKSLYPGN--SSPSQVSLAFM-DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVA 382 (728)
Q Consensus 308 gast~~~~~~~~~~~-~~g~~~~g~s~~~~~--~~~~~~~lv~~-~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~ 382 (728)
||++.++.+...+.+ +++....+.+++... ...+.+++++. ..|.+..+ .+++||||+|+ |.|.+.+|..++++
T Consensus 224 gA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~g~~~~~~-~~v~Gkivl~~rg~~~~~~k~~~~~~ 302 (926)
T 1xf1_A 224 ASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDF-KDVKGKIALIERGDIDFKDKIAKAKK 302 (926)
T ss_dssp EEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTTSCSTTTT-TTCTTSEEEEECCSSCHHHHHHHHHH
T ss_pred eccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCCCCCccch-hhcCCeEEEEECCCCCHHHHHHHHHh
Confidence 999999999888887 555444444433211 12568999996 45776666 45999999999 99999999999999
Q ss_pred cCceEEEEecCCCc-cc--cccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeE--ecccCCCccccccCCCCCC
Q 004824 383 AGVLGAVFISNSAL-LE--VYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTV--IGTKPAPMVDSYSSRGPFL 457 (728)
Q Consensus 383 ~Ga~g~i~~n~~~~-~~--~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~a~fSS~GP~~ 457 (728)
+|+.|+|++|+... .. ......+|++.++..+|+.|+. .+..+|.+..+. +.....+.++.||||||+.
T Consensus 303 ~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~------~~~~ti~~~~~~~~~~~~~~~~~a~FSSrGp~~ 376 (926)
T 1xf1_A 303 AGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------NPQKTITFNATPKVLPTASGTKLSRFSSWGLTA 376 (926)
T ss_dssp TTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH------CSSCEEEECSSCEEEECSSCSBCCTTSCCCBCT
T ss_pred CCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh------CCceEEEecccceecccCCcceeccccCCCCCC
Confidence 99999999998765 21 1122345999999999998873 345566666543 4556678999999999997
Q ss_pred CCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHh----hhCCCCCHHH----HH
Q 004824 458 SCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLK----AAHPDWSPAA----IR 529 (728)
Q Consensus 458 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----~~~p~lsp~~----ik 529 (728)
+. ++||||+|||++|+++++. +.|..+||||||||||||+||||+ +.||+|+|+| ||
T Consensus 377 ~~--~lKPDI~APG~~I~sa~~~-------------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Ik 441 (926)
T 1xf1_A 377 DG--NIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAK 441 (926)
T ss_dssp TS--CBSCCEEEECCCEEESSSC-------------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHH
T ss_pred CC--ccCceEECCCCCEEeeccC-------------CcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 64 5999999999999999985 589999999999999999999995 5699999997 99
Q ss_pred HHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCCCCceecCChhhHHHHHHhcCCCccceeecccccccc
Q 004824 530 SALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIRIFTKSSQKC 609 (728)
Q Consensus 530 ~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~~~lv~~~~~~dy~~~lc~~~~~~~~~~~~~~~~~~c 609 (728)
++||+||+++...+. ..++++++||+|+||+.+|+++.+ |||..+++..
T Consensus 442 s~L~~TA~~~~~~~~--------~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~------------ 490 (926)
T 1xf1_A 442 KVLMSSATALYDEDE--------KAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS------------ 490 (926)
T ss_dssp HHHHHHSBCCEEGGG--------TEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS------------
T ss_pred HHHHhcCCCcccCCC--------CccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc------------
Confidence 999999998754321 234578899999999999999865 5676654321
Q ss_pred CCCCCCCCCCceeeeccCCCCCCCCceeEEEEEEEEeCCCC--CeEEEEEEec--CCCeEEEEEeceEEEec-------c
Q 004824 610 NNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEV--GTAYTAKLTG--IDGLKVYVEPRRLVFKQ-------K 678 (728)
Q Consensus 610 ~~~~~~ln~psi~~~~~~~~~~~~~~~~~t~~rtvtn~g~~--~~ty~~~~~~--~~g~~v~v~p~~~~~~~-------~ 678 (728)
+|.+.... .+++++|||||+|+. ..+|++.+.. |.+..++|+|..|.|.. +
T Consensus 491 ----------~i~l~~~~--------~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~a 552 (926)
T 1xf1_A 491 ----------KVHLNNVS--------DKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPA 552 (926)
T ss_dssp ----------CEEEEEEC--------SEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECT
T ss_pred ----------eeeccccC--------ccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECC
Confidence 23333221 468899999999985 4678887765 77889999888776654 4
Q ss_pred CeeEEEEEEEEecc--------cCCCceEEEEEEEEeCCCCcE-EEeEEEEEee
Q 004824 679 YEKQSYKLTLEGPK--------LLEKDVVYGSISWVDDDGRYE-VRSPIVATNL 723 (728)
Q Consensus 679 g~~~~~~vt~~~~~--------~~~~~~~~G~i~~~~~~~~~~-v~~P~~~~~~ 723 (728)
||+++|+|||++.. ..++.++||+|+|++.++.|. ||+||+++..
T Consensus 553 g~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~g 606 (926)
T 1xf1_A 553 NSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRG 606 (926)
T ss_dssp TEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEES
T ss_pred CCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEec
Confidence 99999999999741 234568999999997557665 9999999854
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=534.12 Aligned_cols=340 Identities=32% Similarity=0.509 Sum_probs=275.0
Q ss_pred cccEEEEecceeeEEEEEeCHHHHHHH-----------hcCCCeEEEecCCcccccCCCC--ccccCCCCCCCCCCCCCC
Q 004824 38 SSKLVYTYANSIHGFSATLTVSELETL-----------KKLPGYISSTPDRPLAVHTTHT--SEFLGLSSLSGAWPASNY 104 (728)
Q Consensus 38 ~~~i~~~y~~~~ngfs~~l~~~~~~~L-----------~~~p~V~~V~~~~~~~~~~~~s--~~~~g~~~~~~~~~~~~~ 104 (728)
+.+++|+|+ .|+||+++++++++++| +++|+|++|+++..+++..... ...+...+...+|..+++
T Consensus 59 g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (539)
T 3afg_A 59 GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYD 137 (539)
T ss_dssp TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBCSCCBCCSCC
T ss_pred CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCcHhHHhcCCC
Confidence 578999997 79999999999999999 8999999999999887643221 111222345679999999
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCC
Q 004824 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSG 184 (728)
Q Consensus 105 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~g 184 (728)
|+||+|||||||||++||+|.++ +++.++|..+. ..+.|..|
T Consensus 138 G~gv~VaViDtGid~~Hpdl~~~---------------------------i~~~~d~~~~~-----------~~~~D~~g 179 (539)
T 3afg_A 138 GSGITIGIIDTGIDASHPDLQGK---------------------------VIGWVDFVNGK-----------TTPYDDNG 179 (539)
T ss_dssp CTTCEEEEEESBCCTTSGGGTTT---------------------------EEEEEETTTCC-----------SSCCBSSS
T ss_pred CCCcEEEEEecCCCCCChHHhCC---------------------------EeeeEECCCCC-----------CCCCCCCC
Confidence 99999999999999999999753 56666665431 24678899
Q ss_pred ChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC----CCcEEEeccccCC
Q 004824 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD----GVDVLSLSLGLSL 259 (728)
Q Consensus 185 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~ 259 (728)
|||||||||||+.... .|.+.||||+|+|+.+|+++..| +..+++++||+||+++ |++|||||||.
T Consensus 180 HGThVAgiiag~~~~~-------~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~-- 250 (539)
T 3afg_A 180 HGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGS-- 250 (539)
T ss_dssp HHHHHHHHHHCCCGGG-------TTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCC--
T ss_pred CHHHHHHHHhCcCccC-------CCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCC--
Confidence 9999999999975321 23358999999999999998876 7789999999999976 89999999998
Q ss_pred CCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC--ccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCC
Q 004824 260 NGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW--TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGN 337 (728)
Q Consensus 260 ~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~ 337 (728)
.......+.+..++.++.++|++||+||||+|+... ..+..++++|+|||++
T Consensus 251 ~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~-------------------------- 304 (539)
T 3afg_A 251 SQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVD-------------------------- 304 (539)
T ss_dssp CSCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEEC--------------------------
T ss_pred CCCCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeec--------------------------
Confidence 333445677888888999999999999999998654 3466789999999842
Q ss_pred CCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHH
Q 004824 338 SSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417 (728)
Q Consensus 338 ~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~ 417 (728)
T Consensus 305 -------------------------------------------------------------------------------- 304 (539)
T 3afg_A 305 -------------------------------------------------------------------------------- 304 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCce
Q 004824 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFN 497 (728)
Q Consensus 418 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 497 (728)
..+.+++||||||+.+++ +||||+|||++|+++++...... +.....|.
T Consensus 305 -------------------------~~~~~a~fSs~Gp~~~~~--~kpdi~APG~~I~s~~~~~~~~~----~~~~~~y~ 353 (539)
T 3afg_A 305 -------------------------KYDVITDFSSRGPTADNR--LKPEVVAPGNWIIAARASGTSMG----QPINDYYT 353 (539)
T ss_dssp -------------------------TTSCBCSSSCCCCCTTCB--CCCSEEEECSSEEEECCTTCCCS----EECSSSEE
T ss_pred -------------------------CCcccccccCCCCCCCCC--CcccEecCcCCEEeeccCCCCCC----CCCccccc
Confidence 123679999999998755 99999999999999986532110 11124699
Q ss_pred eeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCCC
Q 004824 498 LMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDP 574 (728)
Q Consensus 498 ~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~~ 574 (728)
.++|||||||||||++|||+|++|+|+|++||++|++||+++...+ ..++.||+|+||+.+|++.
T Consensus 354 ~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~~------------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 354 AAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDE------------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGGG------------CSBTTTBTCBCCHHHHHTG
T ss_pred ccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC------------CCccCccCCccCHHHHhhh
Confidence 9999999999999999999999999999999999999999875321 1345899999999999984
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-56 Score=489.34 Aligned_cols=321 Identities=26% Similarity=0.400 Sum_probs=262.2
Q ss_pred cccEEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEecCCcccccCCCCc-----------cccCCC--CCCCCCCCCCC
Q 004824 38 SSKLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTHTS-----------EFLGLS--SLSGAWPASNY 104 (728)
Q Consensus 38 ~~~i~~~y~~~~ngfs~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~~~s~-----------~~~g~~--~~~~~~~~~~~ 104 (728)
+.+++++|. .+++|+++++++++++|+++|+|++|+++..++++....+ ..|++. +...+|..+ +
T Consensus 23 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~ 100 (395)
T 2z2z_A 23 GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-D 100 (395)
T ss_dssp TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGGGGGTC-S
T ss_pred CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHHHHhhc-C
Confidence 578999998 4999999999999999999999999999998876432110 112222 245689988 8
Q ss_pred CCC--cEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCC
Q 004824 105 GKG--VIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDG 182 (728)
Q Consensus 105 G~G--v~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~ 182 (728)
|+| |+|||||||||++||+|.++ ++..++|..+... .......|.
T Consensus 101 G~g~~v~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~------~~~~~~~d~ 147 (395)
T 2z2z_A 101 GSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRGKVS------TKLRDCADQ 147 (395)
T ss_dssp SCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGGCCB------CCHHHHBCS
T ss_pred CCCCcEEEEEEcCCCCCCChhHhhc---------------------------cccCccccCCccc------CCCCCCCCC
Confidence 999 99999999999999999753 3444444432100 000124678
Q ss_pred CCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC---------------
Q 004824 183 SGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD--------------- 246 (728)
Q Consensus 183 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~--------------- 246 (728)
.||||||||||+|.. + ..| +.||||+|+|+.+|+++..| +..+++++||+||+++
T Consensus 148 ~gHGT~vAgiia~~~-n---~~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~ 218 (395)
T 2z2z_A 148 NGHGTHVIGTIAALN-N---DIG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG 218 (395)
T ss_dssp SSHHHHHHHHHHCCC-S---SSS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTT
T ss_pred CCCHHHHHHHHHeec-C---CCc-----eEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCccccccccccccccc
Confidence 999999999999973 1 123 28999999999999998876 7788999999999998
Q ss_pred -----CCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEE
Q 004824 247 -----GVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLT 321 (728)
Q Consensus 247 -----g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~ 321 (728)
+++|||||||.. . ....+..++..+.++|++||+||||+|.....++...|++|+|||++
T Consensus 219 ~~~~~~~~Vin~S~G~~--~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~---------- 283 (395)
T 2z2z_A 219 DPDDDAAEVISMSLGGP--A---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAID---------- 283 (395)
T ss_dssp CTTSCCCSEEEECEEBS--C---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC----------
T ss_pred cccCCCCeEEEecCCCC--C---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEec----------
Confidence 999999999993 2 23556677778899999999999999988778888899999999843
Q ss_pred cCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCcccccc
Q 004824 322 LGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYI 401 (728)
Q Consensus 322 ~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 401 (728)
T Consensus 284 -------------------------------------------------------------------------------- 283 (395)
T 2z2z_A 284 -------------------------------------------------------------------------------- 283 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCC
Q 004824 402 RSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPI 481 (728)
Q Consensus 402 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 481 (728)
..+.+++||++|| +|+|||++|+++++.
T Consensus 284 -----------------------------------------~~~~~a~fS~~G~----------~v~APG~~i~s~~~~- 311 (395)
T 2z2z_A 284 -----------------------------------------SNDNIASFSNRQP----------EVSAPGVDILSTYPD- 311 (395)
T ss_dssp -----------------------------------------TTSCBCTTSCSSC----------SEEEECSSEEEEETT-
T ss_pred -----------------------------------------CCCCCCcccCCCC----------CEEeCCCCeeeecCC-
Confidence 1236799999997 679999999999885
Q ss_pred CCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCC-------------CCCHHHHHHHHHhccccCCCCCCcccc
Q 004824 482 SSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHP-------------DWSPAAIRSALVTTASPLDNTLSHIKD 548 (728)
Q Consensus 482 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-------------~lsp~~ik~~L~~TA~~~~~~g~~~~d 548 (728)
+.|..++|||||||||||++|||+|++| .|++.+||++|++||+++...+
T Consensus 312 ------------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g----- 374 (395)
T 2z2z_A 312 ------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG----- 374 (395)
T ss_dssp ------------TEEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS-----
T ss_pred ------------CceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCC-----
Confidence 5799999999999999999999999999 9999999999999999875322
Q ss_pred CCCCCCCCCCCccCCCccCccccCCC
Q 004824 549 ASNNNFPASPLDMGAGHINPNKALDP 574 (728)
Q Consensus 549 ~~~~~~~~~~~~~G~G~in~~~Al~~ 574 (728)
.+..||+|+||+.+|++.
T Consensus 375 --------~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 375 --------WDADYGYGVVRAALAVQA 392 (395)
T ss_dssp --------SBTTTBTCBCCHHHHHHH
T ss_pred --------CCCCccCceeCHHHHHHH
Confidence 345899999999999863
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-55 Score=492.15 Aligned_cols=336 Identities=23% Similarity=0.274 Sum_probs=265.2
Q ss_pred CcccEEEEecceeeEEEEEeCHHHHHHHhc-CCCeEEEecCCcccccCCCC-------------ccccCCCCCCCCCCCC
Q 004824 37 ISSKLVYTYANSIHGFSATLTVSELETLKK-LPGYISSTPDRPLAVHTTHT-------------SEFLGLSSLSGAWPAS 102 (728)
Q Consensus 37 ~~~~i~~~y~~~~ngfs~~l~~~~~~~L~~-~p~V~~V~~~~~~~~~~~~s-------------~~~~g~~~~~~~~~~~ 102 (728)
.+.+++++|. .|++|+++++++++++|++ +|+|++|+++..++++.... |.+..+.....+|..+
T Consensus 64 ~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~ 142 (471)
T 3t41_A 64 KSLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDL 142 (471)
T ss_dssp HTCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGC
T ss_pred CCCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhcc
Confidence 3678899996 5999999999999999999 99999999999887754322 2222222233589999
Q ss_pred CCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCC
Q 004824 103 NYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDG 182 (728)
Q Consensus 103 ~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~ 182 (728)
.+|+||+|||||||||++||+|.++- |.+. ..++....|... ......+...+.|.
T Consensus 143 ~~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~-------------~~~~~~~~~~~~----~~~~~~~~~~~~d~ 198 (471)
T 3t41_A 143 PKHANTKIAIIDTGVMKNHDDLKNNF-------STDS-------------KNLVPLNGFRGT----EPEETGDVHDVNDR 198 (471)
T ss_dssp CSSCCCCEEEEESCCCTTCTTTTTTB-------CTTC-------------EECCCTTCGGGC----CTTCCCCTTCCCCS
T ss_pred CCCCCcEEEEEeCCCCCCChhHhcCc-------ccCC-------------cccccCCCccCC----CcccCCCCCCCcCC
Confidence 99999999999999999999998641 1110 011111111111 11111222356789
Q ss_pred CCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEEeccccCCCCC
Q 004824 183 SGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGI 262 (728)
Q Consensus 183 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 262 (728)
.||||||||||+|+.. +.||||+|+|+.+|+++..++...++++||+||+++|++|||||||.. ...
T Consensus 199 ~gHGT~vAgiiaa~g~------------~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~-~~~ 265 (471)
T 3t41_A 199 KGHGTMVSGQTSANGK------------LIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSY-IIL 265 (471)
T ss_dssp SSHHHHHHHHHHCBSS------------SBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEE-EEE
T ss_pred CCccchhhheeecCCc------------eeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCC-CCC
Confidence 9999999999998632 389999999999999988778999999999999999999999999973 100
Q ss_pred ------------CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC------------------ccccCCCceEEeccccc
Q 004824 263 ------------FLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW------------------TLINGAPWLLTVGAGTI 312 (728)
Q Consensus 263 ------------~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~------------------~~~~~ap~vitVgast~ 312 (728)
....+.+..++..+.++|++||+||||+|.... ..+..+|++|+|||++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~- 344 (471)
T 3t41_A 266 DKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTD- 344 (471)
T ss_dssp CTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEEC-
T ss_pred ccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeC-
Confidence 123467788888999999999999999997653 2567789999999843
Q ss_pred cceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEec
Q 004824 313 DREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFIS 392 (728)
Q Consensus 313 ~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n 392 (728)
T Consensus 345 -------------------------------------------------------------------------------- 344 (471)
T 3t41_A 345 -------------------------------------------------------------------------------- 344 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCC
Q 004824 393 NSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGS 472 (728)
Q Consensus 393 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~ 472 (728)
..+.+++||++||+. |||+|||+
T Consensus 345 --------------------------------------------------~~~~~a~fS~~G~~~-------~di~APG~ 367 (471)
T 3t41_A 345 --------------------------------------------------QKSNLSEFSNFGMNY-------TDIAAPGG 367 (471)
T ss_dssp --------------------------------------------------TTSSBCTTCCBCTTT-------CCEEEECC
T ss_pred --------------------------------------------------CCCCCCCccCCCCCC-------CeEEecCC
Confidence 123679999999964 69999998
Q ss_pred c----------------------eeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCC-CCCHHHHH
Q 004824 473 L----------------------VLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHP-DWSPAAIR 529 (728)
Q Consensus 473 ~----------------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~lsp~~ik 529 (728)
+ |+++++. +.|..++|||||||||||++|||+|++| .|+|++||
T Consensus 368 ~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~-------------~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~ 434 (471)
T 3t41_A 368 SFAYLNQFGVDKWMNEGYMHKENILTTANN-------------GRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAI 434 (471)
T ss_dssp CCHHHHHHHHHHHHHTTTHHHHSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred CcccccccccccccccccccCceeEecCCC-------------CCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 7 7888775 6899999999999999999999999999 89999999
Q ss_pred HHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCCCC
Q 004824 530 SALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPG 575 (728)
Q Consensus 530 ~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~~~ 575 (728)
++|++||.+... .++..||||+||+.+|++..
T Consensus 435 ~~L~~tA~~~~~--------------~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 435 ELLYQHGTSKNN--------------KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp HHHHHHSBCCSC--------------CCHHHHTTCBBCHHHHTTTT
T ss_pred HHHHHhCCCCCC--------------CCcCccccChhCHHHHHHHH
Confidence 999999987642 24458999999999999854
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-53 Score=476.63 Aligned_cols=365 Identities=24% Similarity=0.337 Sum_probs=267.6
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
++.+|..+ |+||+|||||||||++||+|.++ ++..+++... .
T Consensus 13 ~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~---------------------------~~~~~~~~~~---------~ 54 (441)
T 1y9z_A 13 ATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT---------G 54 (441)
T ss_dssp CSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS---------C
T ss_pred hhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC---------------------------cccCcccCCC---------C
Confidence 46688865 77999999999999999999753 1111111110 0
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCC--eEEEEEeeeCCC-CChHHHHHHHHHHHHC-CCcE
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRA--CVAMYKAIWRHG-VYSSDVVAAIDQALQD-GVDV 250 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A--~i~~~kv~~~~g-~~~~~i~~ai~~a~~~-g~dV 250 (728)
+...+.|..||||||||||+|.... .| +.||||+| +|+.+|+++..+ ++.+++++||+||+++ |++|
T Consensus 55 ~~~~~~d~~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~V 125 (441)
T 1y9z_A 55 NWYQPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANV 125 (441)
T ss_dssp CTTCCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSE
T ss_pred CCCCCCCCCCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcE
Confidence 1124567899999999999997521 23 38999995 999999999877 7888999999999999 9999
Q ss_pred EEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceee-------------
Q 004824 251 LSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFE------------- 317 (728)
Q Consensus 251 IN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~------------- 317 (728)
||||||.. . ....+..++.++.++|++||+||||+|.....++...|++|+|||++.+....
T Consensus 126 in~S~G~~--~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~A 200 (441)
T 1y9z_A 126 VTMSLGGS--G---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISG 200 (441)
T ss_dssp EEECCCBS--C---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEE
T ss_pred EEeCCCCC--C---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEe
Confidence 99999983 2 22455667778999999999999999988778888899999999987764321
Q ss_pred ------eEEEcCCCc----EEeeeecCCCCCCC--Ceee--EEE------------ccCCCCC--ccCcc-CcceEEEEc
Q 004824 318 ------GSLTLGNGV----QINFKSLYPGNSSP--SQVS--LAF------------MDACDSV--TELKK-VINSIVVCR 368 (728)
Q Consensus 318 ------~~~~~~~g~----~~~g~s~~~~~~~~--~~~~--lv~------------~~~c~~~--~~~~~-~~gkiv~~~ 368 (728)
.....++++ .+.|.+++...... ..++ +.+ ...|... .++.. ++|||++|+
T Consensus 201 pG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~ 280 (441)
T 1y9z_A 201 PGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVE 280 (441)
T ss_dssp ECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEE
T ss_pred ccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEe
Confidence 111122222 23333333211000 0000 000 1347543 45555 999999999
Q ss_pred -cCC-----chhHHHHHHHHcCceEEEEecCCCccc----c--c-ccc-CccEEEeecccHHHHHHHHHhCCCCeEEEEe
Q 004824 369 -EDS-----SISSQIDNAVAAGVLGAVFISNSALLE----V--Y-IRS-SFPAAFINVNDGQTIIDYIKKCDNPTGSLQF 434 (728)
Q Consensus 369 -g~~-----~~~~~~~~~~~~Ga~g~i~~n~~~~~~----~--~-~~~-~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~ 434 (728)
+.+ .+.+|..+++++|+.|+|++|+..... . . ... .+|.+.++..+|+.|+.|+.++ ++
T Consensus 281 rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~t--- 353 (441)
T 1y9z_A 281 RVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----TT--- 353 (441)
T ss_dssp CCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----EE---
T ss_pred ccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----cc---
Confidence 765 678999999999999999999865311 1 1 112 3499999999999999876321 00
Q ss_pred eeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHH
Q 004824 435 RKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAG 514 (728)
Q Consensus 435 ~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 514 (728)
+ +... .+.|..++|||||||||||++|
T Consensus 354 --------------------------------~--------~~~~-------------~~~y~~~sGTSmAaP~VAG~aA 380 (441)
T 1y9z_A 354 --------------------------------V--------SNQG-------------NQDYEYYNGTSMATPHVSGVAT 380 (441)
T ss_dssp --------------------------------E--------EEEE-------------EESEEEECSHHHHHHHHHHHHH
T ss_pred --------------------------------c--------cccc-------------CCCceeecccccCCcccchHHH
Confidence 0 0111 2689999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCCCCceecCChhhHHHHHHhcCC
Q 004824 515 LLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNY 594 (728)
Q Consensus 515 Ll~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~~~lv~~~~~~dy~~~lc~~~~ 594 (728)
||+|+||+|+|++||++||+||+++...+ .+.+||+|+||+.+|+ ||+.|||..++
T Consensus 381 Ll~~~~p~~sp~~ik~~L~~TA~~~~~~g-------------~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~ 436 (441)
T 1y9z_A 381 LVWSYHPECSASQVRAALNATADDLSVAG-------------RDNQTGYGMINAVAAK-----------AYLDESCTGPT 436 (441)
T ss_dssp HHHHHCTTSCHHHHHHHHHHHSBCCSSSS-------------CBTTTBTCBCCHHHHH-----------HHHHHCTTCC-
T ss_pred HHHHHCCCCCHHHHHHHHHhhchhhccCC-------------CcccccccccCHHHHH-----------HHHHhhhcCCC
Confidence 99999999999999999999999886533 2458999999999996 59999999875
Q ss_pred C
Q 004824 595 K 595 (728)
Q Consensus 595 ~ 595 (728)
.
T Consensus 437 ~ 437 (441)
T 1y9z_A 437 D 437 (441)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-52 Score=478.60 Aligned_cols=347 Identities=26% Similarity=0.289 Sum_probs=256.2
Q ss_pred cccEEEEecceeeEEEEEeCH---H-HHHHHhc--CCCeEEEecCCcccccC----CC----------------------
Q 004824 38 SSKLVYTYANSIHGFSATLTV---S-ELETLKK--LPGYISSTPDRPLAVHT----TH---------------------- 85 (728)
Q Consensus 38 ~~~i~~~y~~~~ngfs~~l~~---~-~~~~L~~--~p~V~~V~~~~~~~~~~----~~---------------------- 85 (728)
+.++.+++. .+++++++++. + .+++|++ +|+|++|+|+..+++.. ..
T Consensus 52 g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (671)
T 1r6v_A 52 NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE 130 (671)
T ss_dssp TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCccccccccccccccccccccccc
Confidence 356788887 68999999864 3 3567764 89999999997665431 00
Q ss_pred -CccccCCC--CCCCC-CCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeec
Q 004824 86 -TSEFLGLS--SLSGA-WPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFF 161 (728)
Q Consensus 86 -s~~~~g~~--~~~~~-~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~ 161 (728)
....|++. ++..+ |.. ++|+||+|||||||||++||+|.++ ++..+.+
T Consensus 131 ~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTGVd~~HpdL~~~---------------------------~~~g~~~ 182 (671)
T 1r6v_A 131 LSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTGVDGTHPDLEGQ---------------------------VIAGYRP 182 (671)
T ss_dssp TGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESCCBTTSGGGTTT---------------------------BCCEEEG
T ss_pred ccccCCchhccCCchhhhhc-cCCCCCEEEEEeCCCCCCCcccccc---------------------------EEecccc
Confidence 00112221 22345 877 8899999999999999999999864 1111111
Q ss_pred cccccccCCCCccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeC------CC-CChH
Q 004824 162 NKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWR------HG-VYSS 234 (728)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~------~g-~~~~ 234 (728)
..+... ....+..|..||||||||||||..+ + .|+ .||||+|+|+.+|+++. .+ ....
T Consensus 183 ~~~~~~------p~~~d~~d~~gHGThVAGiIAa~~n-g---~gv-----~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~ 247 (671)
T 1r6v_A 183 AFDEEL------PAGTDSSYGGSAGTHVAGTIAAKKD-G---KGI-----VGVAPGAKIMPIVIFDDPALVGGNGYVGDD 247 (671)
T ss_dssp GGTEEE------CTTCBCCTTCSHHHHHHHHHHCCCS-S---SSC-----CCSCTTSEEEEEESBCCHHHHCTTSBCCHH
T ss_pred cCCCcC------CCCCCCccCCCcchhhhhhhhccCC-C---Cce-----EEECCCCEEEEEEeccCccccCCCCccCHH
Confidence 111000 0011234678999999999999742 1 233 89999999999999986 22 3456
Q ss_pred HHHHHHHHHHHCCCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEecccccc
Q 004824 235 DVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY-WTLINGAPWLLTVGAGTID 313 (728)
Q Consensus 235 ~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~ap~vitVgast~~ 313 (728)
.+++||+||+++|++|||||||.. . +...+..++..|.++|++||+||||+|... ..++...|++|+|||++.+
T Consensus 248 ~i~~ai~~A~~~gadVIN~SlG~~--~---~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~ 322 (671)
T 1r6v_A 248 YVAAGIIWATDHGAKVMNHSWGGW--G---YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYY 322 (671)
T ss_dssp HHHHHHHHHHHTTCSEEEECEEBS--C---CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCC--C---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCC
Confidence 789999999999999999999983 2 345677788889999999999999999865 5677788999999995321
Q ss_pred ceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecC
Q 004824 314 REFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISN 393 (728)
Q Consensus 314 ~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 393 (728)
..
T Consensus 323 g~------------------------------------------------------------------------------ 324 (671)
T 1r6v_A 323 GG------------------------------------------------------------------------------ 324 (671)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCc
Q 004824 394 SALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSL 473 (728)
Q Consensus 394 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~ 473 (728)
...+++||++||.. ||+|||++
T Consensus 325 --------------------------------------------------~~~~a~fSn~G~~v--------dv~APG~~ 346 (671)
T 1r6v_A 325 --------------------------------------------------TFRVAGFSSRSDGV--------SVGAPGVT 346 (671)
T ss_dssp --------------------------------------------------EEEECSSSCCCTTE--------EEEEECSS
T ss_pred --------------------------------------------------ceeeccccCCCCCe--------eEEecCCC
Confidence 01478999999864 99999999
Q ss_pred eeeccCCCCCccc-----cccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCcccc
Q 004824 474 VLASWSPISSVAE-----VQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKD 548 (728)
Q Consensus 474 I~sa~~~~~~~~~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d 548 (728)
|+++++....... .......+.|..++|||||||||||++|||+|++|+|+|.+||++|++||+++...+
T Consensus 347 I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g----- 421 (671)
T 1r6v_A 347 ILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG----- 421 (671)
T ss_dssp EEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS-----
T ss_pred EEeecCCCCccccccccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC-----
Confidence 9999875321110 001112357999999999999999999999999999999999999999999875432
Q ss_pred CCCCCCCCCCCccCCCccCccccCCCCceecCCh
Q 004824 549 ASNNNFPASPLDMGAGHINPNKALDPGLVYDATA 582 (728)
Q Consensus 549 ~~~~~~~~~~~~~G~G~in~~~Al~~~lv~~~~~ 582 (728)
.+..||+|+||+.+|++..|.++...
T Consensus 422 --------~d~~~G~G~vna~~Al~~~l~~~~~~ 447 (671)
T 1r6v_A 422 --------WDHDTGYGLVKLDAALQGPLPTQGGV 447 (671)
T ss_dssp --------CBTTTBTCBCCHHHHHHCCCCSSSEE
T ss_pred --------CCCCcccceeCHHHHhhhhcCCCCCc
Confidence 34589999999999999877655433
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-54 Score=491.47 Aligned_cols=301 Identities=22% Similarity=0.257 Sum_probs=40.8
Q ss_pred ccEEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEecCCcccccCCCCccccCCCCC------CCCCCCCCCCCCcEEEE
Q 004824 39 SKLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTHTSEFLGLSSL------SGAWPASNYGKGVIIGL 112 (728)
Q Consensus 39 ~~i~~~y~~~~ngfs~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~~~s~~~~g~~~~------~~~~~~~~~G~Gv~VgV 112 (728)
.+++++|+++|+||+++++++++++|+++|+|++|+++..++.+ ... |++.++ ...|..+.+|+||+|||
T Consensus 109 ~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~-~~p---WgL~~i~~~~~~~~~w~~~~~G~GV~VaV 184 (692)
T 2p4e_P 109 TKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQ-SIP---WNLERITPPRYRADEYQPPDGGSLVEVYL 184 (692)
T ss_dssp CEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC------------------------------------
T ss_pred cceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccC-CCC---cchhhcccccccccccccCCCCCCcEEEE
Confidence 68999999999999999999999999999999999999977542 222 333321 23688889999999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChhhHHHH
Q 004824 113 VDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSI 192 (728)
Q Consensus 113 IDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi 192 (728)
||||||++||+|.++-. |. +|+ +..+.+ + ......+.|..|||||||||
T Consensus 185 IDTGId~~HpdL~gr~~------~~-------~~~-------------~~~d~d---g--~~~~~~~~D~~GHGTHVAGi 233 (692)
T 2p4e_P 185 LDTSIQSDHREIEGRVM------VT-------DFE-------------NVPEED---G--TRFHRQASKCDSHGTHLAGV 233 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EcCCCCCCChhhcCceE------ec-------ccc-------------cccCCC---C--CcccCCCCCCCCcHHHhhhH
Confidence 99999999999986410 10 010 000000 0 00012466889999999999
Q ss_pred hccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC------CCcEEEeccccCCCCCCCh
Q 004824 193 AAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD------GVDVLSLSLGLSLNGIFLE 265 (728)
Q Consensus 193 iaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~------g~dVIN~SlG~~~~~~~~~ 265 (728)
|+|+. .||||+|+|+.+|+++..| ++.+++++||+|++++ |++|||||||+ ..
T Consensus 234 IAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg--~~---- 293 (692)
T 2p4e_P 234 VSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAG--GY---- 293 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCCC--CC----
Confidence 99873 6999999999999998876 7888999999999986 89999999998 32
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCeee
Q 004824 266 DDAIAVATFAAMEKGVLVVASAGNDGPSYW-TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVS 344 (728)
Q Consensus 266 ~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~ 344 (728)
...+..++..+.++|++||+||||+|.... ..+...|++|+|||++.+...
T Consensus 294 s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~---------------------------- 345 (692)
T 2p4e_P 294 SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP---------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc----------------------------
Confidence 345666777888999999999999997653 346788999999996432110
Q ss_pred EEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHh
Q 004824 345 LAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKK 424 (728)
Q Consensus 345 lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 424 (728)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccc
Q 004824 425 CDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSM 504 (728)
Q Consensus 425 ~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 504 (728)
...-+.||+||| ||||+|||++|+++++.. .+.|..++||||
T Consensus 346 -------------------a~~ss~fSn~G~--------~vDI~APG~~I~St~~~~-----------~~~y~~~SGTSm 387 (692)
T 2p4e_P 346 -------------------VTLGTLGTNFGR--------CVDLFAPGEDIIGASSDC-----------STCFVSQSGTSQ 387 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------cccccccCCCCC--------ceeEEecCCcEEeeccCC-----------CCceEeccchHH
Confidence 000123899997 569999999999998752 257899999999
Q ss_pred hhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCC
Q 004824 505 ATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLD 540 (728)
Q Consensus 505 AaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~ 540 (728)
|||||||++|||++++|+|+|++||++|++||.+..
T Consensus 388 AAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~~ 423 (692)
T 2p4e_P 388 AAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDV 423 (692)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999998653
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-53 Score=462.24 Aligned_cols=303 Identities=22% Similarity=0.229 Sum_probs=198.8
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceee----eeeeccccccccCCC
Q 004824 96 SGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLI----GARFFNKGLIANNPK 171 (728)
Q Consensus 96 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kii----g~~~~~~~~~~~~~~ 171 (728)
..+|.++..|++|+|||||||||++||+|.+....+....|+..++........ .+..+. ..+.+.......
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--- 96 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYA-AFQSIRDQGLKGKEKEEALEAV--- 96 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHH-HHHHHHHHTCCSHHHHHHHHHH---
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCccccc-ccccccCccccccccccccccc---
Confidence 568999998999999999999999999999876666777787655432110000 000000 000000000000
Q ss_pred CccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC------CChHHHHHHHHHHHH
Q 004824 172 LKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG------VYSSDVVAAIDQALQ 245 (728)
Q Consensus 172 ~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g------~~~~~i~~ai~~a~~ 245 (728)
..+...+.|.+||||||||||||+..+ | +.||||+|+|+.+|++.... ....++++||+||++
T Consensus 97 -~~~~~~~~D~~gHGThVAGiiag~~~~-----g-----~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~ 165 (357)
T 4h6x_A 97 -IPDTKDRIVLNDHACHVTSTIVGQEHS-----P-----VFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALE 165 (357)
T ss_dssp -CTTTHHHHHHHHHHHHHHHHHHCCTTS-----S-----CCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHH
T ss_pred -cCCCCCCcCCCCcHHHHHHHHhccCCC-----C-----ceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHH
Confidence 001123446779999999999997422 2 38999999999999975421 345678899999999
Q ss_pred CCCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCC
Q 004824 246 DGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNG 325 (728)
Q Consensus 246 ~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g 325 (728)
.|++|||||||.. .......+.+..++..+.++|++||+||||+|.....++...|++|+|||++
T Consensus 166 ~g~~Vin~S~G~~-~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~-------------- 230 (357)
T 4h6x_A 166 LGANIIHCAFCRP-TQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAK-------------- 230 (357)
T ss_dssp TTCSEEEEC------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEEC--------------
T ss_pred cCCCEEeeccccC-CccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEec--------------
Confidence 9999999999984 3334455677888889999999999999999988888888899999999843
Q ss_pred cEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCc
Q 004824 326 VQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSF 405 (728)
Q Consensus 326 ~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 405 (728)
T Consensus 231 -------------------------------------------------------------------------------- 230 (357)
T 4h6x_A 231 -------------------------------------------------------------------------------- 230 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcc
Q 004824 406 PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVA 485 (728)
Q Consensus 406 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 485 (728)
..+.+++||+||+.. .||||+|||++|+++++..
T Consensus 231 -------------------------------------~~~~~~~fSn~G~~~-----~~~di~APG~~i~s~~~~~---- 264 (357)
T 4h6x_A 231 -------------------------------------VDGTPCHFSNWGGNN-----TKEGILAPGEEILGAQPCT---- 264 (357)
T ss_dssp -------------------------------------TTSSBCTTCC---CT-----TTTEEEEECSSEEECCTTC----
T ss_pred -------------------------------------cCCcccccccCCCCC-----CccceeecCCCeEeccCCC----
Confidence 234679999999865 6899999999999998863
Q ss_pred ccccCcccCCceeeccccchhHHHHHHHHHHhhh----CCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcc
Q 004824 486 EVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAA----HPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDM 561 (728)
Q Consensus 486 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~ 561 (728)
+.|..++|||||||||||++|||+++ +|.|+++|||++|++||+++... ....+.+|
T Consensus 265 --------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~-----------~~~~~~~~ 325 (357)
T 4h6x_A 265 --------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE-----------VVEEPERC 325 (357)
T ss_dssp --------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------------------------C
T ss_pred --------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC-----------CCCCcccc
Confidence 56788999999999999999999954 66899999999999999987532 22345689
Q ss_pred CCCccCccccCC
Q 004824 562 GAGHINPNKALD 573 (728)
Q Consensus 562 G~G~in~~~Al~ 573 (728)
|+|+||+.+|++
T Consensus 326 G~G~vn~~~A~~ 337 (357)
T 4h6x_A 326 LRGFVNIPGAMK 337 (357)
T ss_dssp TTCBCCHHHHHH
T ss_pred eeEEecHHHHHH
Confidence 999999999986
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=425.31 Aligned_cols=259 Identities=32% Similarity=0.430 Sum_probs=211.2
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
...+|+.+..|+||+|||||||||++||+|.++ ++..++|.++.
T Consensus 20 ~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~---------------------------~~~~~~~~~~~--------- 63 (280)
T 1dbi_A 20 TDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDND--------- 63 (280)
T ss_dssp HHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTTB---------
T ss_pred cHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC---------------------------cccceeccCCC---------
Confidence 356999988888999999999999999999753 44455554321
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 253 (728)
..+.|..+|||||||||+|...+.. | +.||||+|+|+.+|+++..+ +..+++++||+||+++|++||||
T Consensus 64 --~~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~ 133 (280)
T 1dbi_A 64 --YDPMDLNNHGTHVAGIAAAETNNAT---G-----IAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINL 133 (280)
T ss_dssp --SCCCCSSSHHHHHHHHHHCCCSSSS---S-----CCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred --CCCCCCCCcHHHHHHHHhCcCCCCC---c-----ceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEe
Confidence 2456889999999999999864332 2 27999999999999998776 78889999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeec
Q 004824 254 SLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSL 333 (728)
Q Consensus 254 SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~ 333 (728)
|||.. . ....+..++..+.++|++||+||||+|......+...+++|+|||++
T Consensus 134 S~G~~--~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~---------------------- 186 (280)
T 1dbi_A 134 SLGCD--C---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD---------------------- 186 (280)
T ss_dssp CCSSC--C---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC----------------------
T ss_pred CCCCC--C---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeC----------------------
Confidence 99983 2 24567777888999999999999999987777788899999999843
Q ss_pred CCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecc
Q 004824 334 YPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVN 413 (728)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~ 413 (728)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T 1dbi_A 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCccc
Q 004824 414 DGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLY 493 (728)
Q Consensus 414 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 493 (728)
..+.+++||++||. |||+|||++|+++++.
T Consensus 187 -----------------------------~~~~~~~~S~~G~~--------~dv~ApG~~i~s~~~~------------- 216 (280)
T 1dbi_A 187 -----------------------------QYDRLASFSNYGTW--------VDVVAPGVDIVSTITG------------- 216 (280)
T ss_dssp -----------------------------TTSCBCTTBCCSTT--------CCEEEECSSEEEEETT-------------
T ss_pred -----------------------------CCCCcCCCCCCCCC--------ceEEEecCCeEeecCC-------------
Confidence 12367899999974 5999999999999875
Q ss_pred CCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 494 SNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 494 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
+.|..++|||||||||||++|||++ |.+++.+||++|++||+++... ...||+|+||+.+|++
T Consensus 217 ~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~---------------~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 217 NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT---------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB---------------TTTBSSEECCHHHHHT
T ss_pred CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC---------------CCcccCCEECHHHHhc
Confidence 5799999999999999999999987 8999999999999999987531 2379999999999986
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=421.20 Aligned_cols=256 Identities=34% Similarity=0.473 Sum_probs=216.2
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
.+.+|..+++|+||+|+|||||| .+||+|. +...++|..+.
T Consensus 13 ~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~-----------------------------~~~~~~~~~~~--------- 53 (269)
T 1gci_A 13 APAAHNRGLTGSGVKVAVLDTGI-STHPDLN-----------------------------IRGGASFVPGE--------- 53 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCC-CCCTTCC-----------------------------EEEEEECSTTC---------
T ss_pred cHHHHhcCCCCCCCEEEEECCCC-CCCHhhc-----------------------------ccCCcccCCCC---------
Confidence 35689999999999999999999 8999984 22334443321
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 253 (728)
..+.|..||||||||||+|... ..| +.||||+|+|+.+|+++..+ +..+++++||+||++++++||||
T Consensus 54 --~~~~d~~gHGT~vAgiia~~~~----~~~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~ 122 (269)
T 1gci_A 54 --PSTQDGNGHGTHVAGTIAALNN----SIG-----VLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANL 122 (269)
T ss_dssp --CSCSCSSSHHHHHHHHHHCCCS----SSB-----CCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEE
T ss_pred --CCCCCCCCChHHHHHHHhcCcC----CCC-----cEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 2356789999999999999731 122 38999999999999998766 67889999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeec
Q 004824 254 SLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSL 333 (728)
Q Consensus 254 SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~ 333 (728)
|||.. . ....+..++..+.++|++||+||||+|.....++...+++|+||+++
T Consensus 123 S~G~~--~---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~---------------------- 175 (269)
T 1gci_A 123 SLGSP--S---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATD---------------------- 175 (269)
T ss_dssp CCCBS--S---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC----------------------
T ss_pred CCCCC--C---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeec----------------------
Confidence 99993 2 23567777888899999999999999988778888899999999842
Q ss_pred CCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecc
Q 004824 334 YPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVN 413 (728)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~ 413 (728)
T Consensus 176 -------------------------------------------------------------------------------- 175 (269)
T 1gci_A 176 -------------------------------------------------------------------------------- 175 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCccc
Q 004824 414 DGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLY 493 (728)
Q Consensus 414 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 493 (728)
..+.+++||++||. |||+|||++|+++++.
T Consensus 176 -----------------------------~~~~~~~~S~~G~~--------~di~APG~~i~s~~~~------------- 205 (269)
T 1gci_A 176 -----------------------------QNNNRASFSQYGAG--------LDIVAPGVNVQSTYPG------------- 205 (269)
T ss_dssp -----------------------------TTSCBCTTCCCSTT--------EEEEEECSSEEEEETT-------------
T ss_pred -----------------------------CCCCCCCCCCCCCC--------cceEecCCCeEeecCC-------------
Confidence 12367899999985 4999999999999875
Q ss_pred CCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 494 SNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 494 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++. .+..||+|+||+.+|++
T Consensus 206 ~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g----------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 206 STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG----------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS----------------CHHHHTTCBCCHHHHTC
T ss_pred CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC----------------CCCCcccCccCHHHHcC
Confidence 57999999999999999999999999999999999999999999773 23489999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=423.92 Aligned_cols=257 Identities=32% Similarity=0.462 Sum_probs=215.0
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
...+|..+++|+||+|+|||||||++||+|. +...++|..+.
T Consensus 13 ~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-----------------------------~~~g~~~~~~~--------- 54 (274)
T 1r0r_E 13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAGE--------- 54 (274)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTTC---------
T ss_pred CHHHHhcCCCCCCCEEEEEcCCCCCCCHhHc-----------------------------CCCCccccCCC---------
Confidence 3568999999999999999999999999994 22333443321
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 253 (728)
....|..+|||||||||+|... ..| +.||||+|+|+.+|+++..+ +..+++++||+||++++++||||
T Consensus 55 --~~~~d~~gHGT~vAgiia~~~~----~~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~ 123 (274)
T 1r0r_E 55 --AYNTDGNGHGTHVAGTVAALDN----TTG-----VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINM 123 (274)
T ss_dssp --CTTCCSSSHHHHHHHHHHCCSS----SSB-----CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEE
T ss_pred --CCCCCCCCCHHHHHHHHHccCC----CCc-----eEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEe
Confidence 1246788999999999999731 122 38999999999999998776 67889999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC----CccccCCCceEEeccccccceeeeEEEcCCCcEEe
Q 004824 254 SLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY----WTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQIN 329 (728)
Q Consensus 254 SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~ 329 (728)
|||.. . ....+..++.++.++|++||+||||+|... ..++...|++|+||+.+
T Consensus 124 S~G~~--~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~------------------ 180 (274)
T 1r0r_E 124 SLGGA--S---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD------------------ 180 (274)
T ss_dssp CEEBS--S---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC------------------
T ss_pred CCCCC--C---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEec------------------
Confidence 99993 2 245677788889999999999999999763 34567788999999842
Q ss_pred eeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEE
Q 004824 330 FKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAF 409 (728)
Q Consensus 330 g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~ 409 (728)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T 1r0r_E 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcccccc
Q 004824 410 INVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQS 489 (728)
Q Consensus 410 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 489 (728)
..+.++.||++|| ||||+|||.+|+++++.
T Consensus 181 ---------------------------------~~~~~~~~S~~G~--------~~di~APG~~i~s~~~~--------- 210 (274)
T 1r0r_E 181 ---------------------------------SNSNRASFSSVGA--------ELEVMAPGAGVYSTYPT--------- 210 (274)
T ss_dssp ---------------------------------TTSCBCTTCCCST--------TEEEEEECSSEEEEETT---------
T ss_pred ---------------------------------CCCCcCccCCCCC--------CceEEeCCCCeEeecCC---------
Confidence 1236789999997 46999999999999875
Q ss_pred CcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCcc
Q 004824 490 GLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPN 569 (728)
Q Consensus 490 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~ 569 (728)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++. .+..||+|+||+.
T Consensus 211 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g----------------~~~~~G~G~~~~~ 270 (274)
T 1r0r_E 211 ----NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG----------------SSFYYGKGLINVE 270 (274)
T ss_dssp ----TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS----------------CHHHHTTCBCCHH
T ss_pred ----CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC----------------CCCCcccCccCHH
Confidence 57999999999999999999999999999999999999999999763 2348999999999
Q ss_pred ccCC
Q 004824 570 KALD 573 (728)
Q Consensus 570 ~Al~ 573 (728)
+|++
T Consensus 271 ~A~~ 274 (274)
T 1r0r_E 271 AAAQ 274 (274)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 9985
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-50 Score=419.96 Aligned_cols=258 Identities=34% Similarity=0.479 Sum_probs=217.6
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
+..+|+.. +|+||+|||||||||++||+|.++ ++..++|.++.
T Consensus 20 ~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~~--------- 62 (279)
T 1thm_A 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK---------------------------VVGGWDFVDND--------- 62 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEETTTTB---------
T ss_pred hHHHHhcC-CCCCCEEEEEccCCCCCCcchhcC---------------------------ccccccccCCC---------
Confidence 35688887 699999999999999999999753 44555555431
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 253 (728)
..+.|..+|||||||||+|...++ .| +.|+||+|+|+.+|+++..+ ++.+++++||+||+++|++||||
T Consensus 63 --~~~~d~~gHGT~vAgiia~~~~n~---~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~ 132 (279)
T 1thm_A 63 --STPQNGNGHGTHCAGIAAAVTNNS---TG-----IAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISL 132 (279)
T ss_dssp --SCCCCSSSHHHHHHHHHHCCCSSS---SS-----CCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred --CCCCCCCCcHHHHHHHHhCccCCC---Cc-----cEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEE
Confidence 245678999999999999986433 22 28999999999999998766 67889999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeec
Q 004824 254 SLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSL 333 (728)
Q Consensus 254 SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~ 333 (728)
|||.. . ....+..++..+.++|++||+||||+|.....++...+++|+||+++
T Consensus 133 S~G~~--~---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~---------------------- 185 (279)
T 1thm_A 133 SLGGT--V---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD---------------------- 185 (279)
T ss_dssp CCCBS--S---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC----------------------
T ss_pred ecCCC--C---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeC----------------------
Confidence 99993 2 24567778888999999999999999988777888899999999843
Q ss_pred CCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecc
Q 004824 334 YPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVN 413 (728)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~ 413 (728)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 1thm_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCccc
Q 004824 414 DGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLY 493 (728)
Q Consensus 414 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 493 (728)
..+.++.||++||. |||+|||++|+++++.
T Consensus 186 -----------------------------~~~~~~~fS~~G~~--------~dv~APG~~i~s~~~~------------- 215 (279)
T 1thm_A 186 -----------------------------QNDNKSSFSTYGSW--------VDVAAPGSSIYSTYPT------------- 215 (279)
T ss_dssp -----------------------------TTSCBCTTCCCCTT--------CCEEEECSSEEEEETT-------------
T ss_pred -----------------------------CCCCcCCcCCCCCc--------eEEEEcCCCeEEEeCC-------------
Confidence 12367899999974 5999999999999875
Q ss_pred CCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 494 SNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 494 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
+.|..++|||||||||||++||| ++|.+++.+||++|++||+++...+ ..||+|+||+.+|++
T Consensus 216 ~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~---------------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 216 STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG---------------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT---------------TTBSSEECCHHHHHH
T ss_pred CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC---------------ccccCCeeCHHHHhc
Confidence 57999999999999999999999 5799999999999999999875422 378999999999975
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-50 Score=422.17 Aligned_cols=259 Identities=31% Similarity=0.445 Sum_probs=215.4
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
...+|..+++|+||+|||||||||++||+|.. ...++|..+.
T Consensus 13 ~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~~--------- 54 (281)
T 1to2_E 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-----------------------------AGGASMVPSE--------- 54 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECCTTC---------
T ss_pred hHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC-----------------------------cCCccccCCC---------
Confidence 35689999999999999999999999999941 2223333210
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 253 (728)
.....|..+|||||||||+|... ..| +.||||+|+|+.+|++...+ +..++++++|+|+++++++||||
T Consensus 55 -~~~~~d~~gHGT~vAgiia~~~~----~~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~ 124 (281)
T 1to2_E 55 -TNPFQDNNSHGTHVAGTVAALNN----SIG-----VLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINM 124 (281)
T ss_dssp -CCTTCCSSSHHHHHHHHHHCCSS----SSS-----BCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEE
T ss_pred -CCCCCCCCCcHHHHHHHHhccCC----CCc-----ceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEE
Confidence 11236788999999999999731 122 38999999999999998766 67889999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC----CccccCCCceEEeccccccceeeeEEEcCCCcEEe
Q 004824 254 SLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY----WTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQIN 329 (728)
Q Consensus 254 SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~ 329 (728)
|||.. . ....+..++..+.++|++||+||||+|... ..++...|++|+|||.+
T Consensus 125 S~G~~--~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~------------------ 181 (281)
T 1to2_E 125 SLGGP--S---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD------------------ 181 (281)
T ss_dssp CEEBS--C---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC------------------
T ss_pred CCcCC--C---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEec------------------
Confidence 99993 2 245677788888999999999999999763 34567789999999842
Q ss_pred eeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEE
Q 004824 330 FKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAF 409 (728)
Q Consensus 330 g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~ 409 (728)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T 1to2_E 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcccccc
Q 004824 410 INVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQS 489 (728)
Q Consensus 410 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 489 (728)
..+.++.||++||. |||+|||.+|+++++.
T Consensus 182 ---------------------------------~~~~~~~fS~~G~~--------~di~APG~~i~s~~~~--------- 211 (281)
T 1to2_E 182 ---------------------------------SSNQRASFSSVGPE--------LDVMAPGVSIQSTLPG--------- 211 (281)
T ss_dssp ---------------------------------TTSCBCTTCCCSTT--------CCEEEECSSEEEEETT---------
T ss_pred ---------------------------------CCCCcCCcCCCCCC--------ceEEecCCCeEeecCC---------
Confidence 12367899999984 5999999999999875
Q ss_pred CcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCcc
Q 004824 490 GLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPN 569 (728)
Q Consensus 490 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~ 569 (728)
+.|..++|||||||+|||++|||+|++|+|++.+||++|++||+++. .++.||+|+||+.
T Consensus 212 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g----------------~~~~~G~G~v~~~ 271 (281)
T 1to2_E 212 ----NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG----------------DSFYYGKGLINVQ 271 (281)
T ss_dssp ----TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS----------------CHHHHTTCBCCHH
T ss_pred ----CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC----------------CCCCcccceecHH
Confidence 57999999999999999999999999999999999999999998773 2348999999999
Q ss_pred ccCCC
Q 004824 570 KALDP 574 (728)
Q Consensus 570 ~Al~~ 574 (728)
+|+++
T Consensus 272 ~a~~~ 276 (281)
T 1to2_E 272 AAAQH 276 (281)
T ss_dssp HHTSS
T ss_pred HHhhh
Confidence 99875
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-51 Score=428.93 Aligned_cols=265 Identities=26% Similarity=0.308 Sum_probs=211.0
Q ss_pred CCCC-CCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCC
Q 004824 102 SNYG-KGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPR 180 (728)
Q Consensus 102 ~~~G-~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 180 (728)
.++| +||+|||||||||++||+|.++ ++..+++... .......
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~---------------------------~~~~~~~~~~---------~~~~~d~ 46 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA---------------------------DLTVLPTLAP---------TAARSDG 46 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC---------------------------EEEECCCSSC---------CCCCTTC
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC---------------------------eeecCcCCCC---------CCCCCCC
Confidence 4578 6999999999999999999864 1111111111 0011223
Q ss_pred CCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC--CChHHHHHHHHHHHHCCCcEEEeccccC
Q 004824 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG--VYSSDVVAAIDQALQDGVDVLSLSLGLS 258 (728)
Q Consensus 181 d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 258 (728)
|..||||||||||+|+..+ | +.||||+|+|+.+|++.+.+ ....++++||+||++++++|||||||..
T Consensus 47 ~~~gHGT~VAGiiag~~~~-----~-----~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~ 116 (282)
T 3zxy_A 47 FMSAHGTHVASIIFGQPET-----S-----VPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGEL 116 (282)
T ss_dssp HHHHHHHHHHHHHHCCTTS-----S-----SCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEE
T ss_pred CCCCcccceeehhhccCCc-----e-----eeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccc
Confidence 4568999999999997532 2 38999999999999986543 6777899999999999999999999984
Q ss_pred CCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCC
Q 004824 259 LNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNS 338 (728)
Q Consensus 259 ~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~ 338 (728)
.........+..++..+.++|+++|+||||+|......+...|++|+|||.+
T Consensus 117 -~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~--------------------------- 168 (282)
T 3zxy_A 117 -TDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMD--------------------------- 168 (282)
T ss_dssp -ESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEEC---------------------------
T ss_pred -cccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEc---------------------------
Confidence 2233345567778888999999999999999998888888899999999842
Q ss_pred CCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHH
Q 004824 339 SPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTI 418 (728)
Q Consensus 339 ~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l 418 (728)
T Consensus 169 -------------------------------------------------------------------------------- 168 (282)
T 3zxy_A 169 -------------------------------------------------------------------------------- 168 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCcee
Q 004824 419 IDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNL 498 (728)
Q Consensus 419 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 498 (728)
..+.++.||+||+.. .||||+|||.+|+++++. +.|..
T Consensus 169 ------------------------~~~~~~~~S~~~~~~-----~~~di~ApG~~i~s~~~~-------------~~~~~ 206 (282)
T 3zxy_A 169 ------------------------DHGHPLDFSNWGSTY-----EQQGILAPGEDILGAKPG-------------GGTER 206 (282)
T ss_dssp ------------------------TTSCBCSSSCCCHHH-----HHHEEEEECSSEEEECTT-------------SCEEE
T ss_pred ------------------------CCCccccccCCCCCc-----cccceeccCcceeeecCC-------------Cceee
Confidence 223678999999865 688999999999999885 68999
Q ss_pred eccccchhHHHHHHHHHHhhhC----CCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 499 MSGTSMATPHVAGVAGLLKAAH----PDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 499 ~sGTSmAaP~VAG~aALl~~~~----p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
++|||||||||||++|||++++ |.++|++||++|++||+++.. ..+.....+|+|+||+.+|++
T Consensus 207 ~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~-----------~~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 207 LSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDD-----------DAPEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC------------------CGGGTTCBCCHHHHHH
T ss_pred cCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCC-----------CCCCccCceeeeEeCHHHHHH
Confidence 9999999999999999999874 789999999999999987653 223345589999999999986
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=432.65 Aligned_cols=264 Identities=27% Similarity=0.411 Sum_probs=214.9
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
+..+|..+++|+||+|||||||||++||+|.++ ++..++|..++..
T Consensus 30 ~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~------- 75 (327)
T 2x8j_A 30 APAVWRASAKGAGQIIGVIDTGCQVDHPDLAER---------------------------IIGGVNLTTDYGG------- 75 (327)
T ss_dssp HHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG---------------------------EEEEEECSSGGGG-------
T ss_pred hHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc---------------------------ccCCccccCCCCC-------
Confidence 466899999999999999999999999999753 4555666554311
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHH------CC
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQ------DG 247 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~------~g 247 (728)
+.....|..||||||||||+|... + .| +.||||+|+|+.+|+++..+ +..+++++||+||++ .+
T Consensus 76 ~~~~~~d~~gHGT~VAgiia~~~~-~---~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~ 146 (327)
T 2x8j_A 76 DETNFSDNNGHGTHVAGTVAAAET-G---SG-----VVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQ 146 (327)
T ss_dssp CTTCCCCSSSHHHHHHHHHHCCCC-S---SB-----CCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCC
T ss_pred CCCCCCCCCCchHHHHHHHhccCC-C---CC-----cEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCC
Confidence 112356889999999999999842 1 12 38999999999999998776 678899999999999 89
Q ss_pred CcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-----CccccCCCceEEeccccccceeeeEEEc
Q 004824 248 VDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY-----WTLINGAPWLLTVGAGTIDREFEGSLTL 322 (728)
Q Consensus 248 ~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-----~~~~~~ap~vitVgast~~~~~~~~~~~ 322 (728)
++|||||||.. . ....+..++..+.++|++||+||||+|... ..++...|++|+|||++
T Consensus 147 ~~Vin~S~G~~--~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~----------- 210 (327)
T 2x8j_A 147 MRIITMSLGGP--T---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVD----------- 210 (327)
T ss_dssp CSEEEECEEBS--C---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEEC-----------
T ss_pred ceEEEECCCcC--C---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEEC-----------
Confidence 99999999993 2 245677778888999999999999999752 35667789999999843
Q ss_pred CCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccc
Q 004824 323 GNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIR 402 (728)
Q Consensus 323 ~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 402 (728)
T Consensus 211 -------------------------------------------------------------------------------- 210 (327)
T 2x8j_A 211 -------------------------------------------------------------------------------- 210 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCC
Q 004824 403 SSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPIS 482 (728)
Q Consensus 403 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~ 482 (728)
..+.++.||++|| ||||+|||++|+++++.
T Consensus 211 ----------------------------------------~~~~~~~fS~~G~--------~~di~APG~~i~s~~~~-- 240 (327)
T 2x8j_A 211 ----------------------------------------FDLRLSDFTNTNE--------EIDIVAPGVGIKSTYLD-- 240 (327)
T ss_dssp ----------------------------------------TTCCBSCC---CC--------CCSEEEECSSEEEECST--
T ss_pred ----------------------------------------CCCCCCCccCCCC--------CceEecCcCceEeecCC--
Confidence 1236789999997 46999999999999875
Q ss_pred CccccccCcccCCceeeccccchhHHHHHHHHHHhhh-----CCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCC
Q 004824 483 SVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAA-----HPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPAS 557 (728)
Q Consensus 483 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-----~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~ 557 (728)
+.|..++|||||||+|||++|||+|+ +|.|++.+||++|++||++... +
T Consensus 241 -----------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~---------------~ 294 (327)
T 2x8j_A 241 -----------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF---------------T 294 (327)
T ss_dssp -----------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS---------------C
T ss_pred -----------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC---------------C
Confidence 57999999999999999999999999 9999999999999999997631 3
Q ss_pred CCccCCCccCccccCC
Q 004824 558 PLDMGAGHINPNKALD 573 (728)
Q Consensus 558 ~~~~G~G~in~~~Al~ 573 (728)
+..||+|+||+.+|++
T Consensus 295 ~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 295 AQAEGNGFLTLDLVER 310 (327)
T ss_dssp HHHHTTCEECTTHHHH
T ss_pred CCceeeeEECHHHHHH
Confidence 4589999999999987
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=422.73 Aligned_cols=281 Identities=32% Similarity=0.405 Sum_probs=222.6
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
...+|..+++|+||+|||||||||++||+|.++ +...++|.... ..
T Consensus 15 ~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~---------------------------~~~~~~~~~~~-------~~ 60 (310)
T 2ixt_A 15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGAT-------TP 60 (310)
T ss_dssp TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSS-------SC
T ss_pred chhhhhccCCCCCcEEEEEecCCCCCCHHHhhc---------------------------ccccccccCCC-------CC
Confidence 467999999999999999999999999999753 33444554321 01
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCC-----
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGV----- 248 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~----- 248 (728)
......|..||||||||||+|....+ ..| +.||||+|+|+.+|++...+ +..+++++||+||+++++
T Consensus 61 ~~~~~~d~~gHGT~vAgiia~~~~~n--~~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~ 133 (310)
T 2ixt_A 61 INNSCTDRNGHGTHVAGTALADGGSD--QAG-----IYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTK 133 (310)
T ss_dssp EETCCCCSSSHHHHHHHHHHCBCCTT--SCS-----CBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHhccCCCC--CCc-----eEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCC
Confidence 11235678999999999999985221 112 38999999999999998776 678899999999999887
Q ss_pred cEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC--CccccCCCceEEeccccccceeeeEEEcCCCc
Q 004824 249 DVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY--WTLINGAPWLLTVGAGTIDREFEGSLTLGNGV 326 (728)
Q Consensus 249 dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~--~~~~~~ap~vitVgast~~~~~~~~~~~~~g~ 326 (728)
+|||||||.. . ....+..++..+.++|++||+||||+|... ..++...|++|+|||.+...
T Consensus 134 ~Vin~S~G~~--~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~------------ 196 (310)
T 2ixt_A 134 TIISMSLGSS--A---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ------------ 196 (310)
T ss_dssp EEEEECCCBS--S---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE------------
T ss_pred eEEEEcCCCC--C---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc------------
Confidence 9999999993 2 245667777888999999999999999763 45667789999999853110
Q ss_pred EEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCcc
Q 004824 327 QINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFP 406 (728)
Q Consensus 327 ~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p 406 (728)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCC--ccccccCCCCCCC-CC---CCCCCcEEeCCCceeeccCC
Q 004824 407 AAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAP--MVDSYSSRGPFLS-CP---NIPKPDILAPGSLVLASWSP 480 (728)
Q Consensus 407 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSS~GP~~~-~~---~~lKPDI~APG~~I~sa~~~ 480 (728)
..+ .++.||++||... .. ...||||+|||.+|+++++.
T Consensus 197 ------------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s~~~~ 240 (310)
T 2ixt_A 197 ------------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN 240 (310)
T ss_dssp ------------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEEECTT
T ss_pred ------------------------------------cCCCeeeccccCCCCccCCccccccCCCeeEECCCCCEeeecCC
Confidence 011 5689999999532 11 12499999999999999875
Q ss_pred CCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCc
Q 004824 481 ISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLD 560 (728)
Q Consensus 481 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~ 560 (728)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||++.+..+.. ...+..++.
T Consensus 241 -------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~~------~a~~g~d~~ 301 (310)
T 2ixt_A 241 -------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY------GAAIGDDYA 301 (310)
T ss_dssp -------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST------TCCSSSBTT
T ss_pred -------------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCCc------ccccCCccc
Confidence 5899999999999999999999999999999999999999999987643311 124456779
Q ss_pred cCCCccCc
Q 004824 561 MGAGHINP 568 (728)
Q Consensus 561 ~G~G~in~ 568 (728)
+|||++|+
T Consensus 302 ~G~G~~~v 309 (310)
T 2ixt_A 302 SGFGFARV 309 (310)
T ss_dssp TBTCBCCC
T ss_pred cccceeec
Confidence 99999996
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-50 Score=428.39 Aligned_cols=271 Identities=26% Similarity=0.325 Sum_probs=218.4
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccC
Q 004824 96 SGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVR 175 (728)
Q Consensus 96 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 175 (728)
+++|+....++||+|||||||||++||+|.++ .+.+..++..+.
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~~~---------- 54 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGA--------------------------DLTRLPSLVSGE---------- 54 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTC--------------------------EEEECC----------------
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCC--------------------------cccCCCcccCCC----------
Confidence 56999988779999999999999999999864 122222222221
Q ss_pred CCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC--CChHHHHHHHHHHHHCCCcEEEe
Q 004824 176 MNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG--VYSSDVVAAIDQALQDGVDVLSL 253 (728)
Q Consensus 176 ~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~ 253 (728)
.....|..||||||||||+|+... | +.||||+|+|+.+|++.+.+ ....++++||+||++++++|||+
T Consensus 55 ~~~~~d~~gHGThVAGiiag~~~~-----~-----~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~ 124 (306)
T 4h6w_A 55 ANANGSMSTHGTHVASIIFGQHDS-----P-----VTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINV 124 (306)
T ss_dssp ----CCCCHHHHHHHHHHHCCTTS-----S-----SCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCCCCchHHHHHHHHccccC-----C-----cceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeec
Confidence 123446789999999999997421 2 38999999999999986543 67788999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeec
Q 004824 254 SLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSL 333 (728)
Q Consensus 254 SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~ 333 (728)
|||.. .........+..++..+.++|+++|+||||+|.....++...+++|+|||++
T Consensus 125 s~g~~-~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~---------------------- 181 (306)
T 4h6w_A 125 SAGQL-TDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMD---------------------- 181 (306)
T ss_dssp CCCEE-ESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEEC----------------------
T ss_pred ccccc-ccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEec----------------------
Confidence 99974 2233445667778889999999999999999988888888889999999842
Q ss_pred CCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecc
Q 004824 334 YPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVN 413 (728)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~ 413 (728)
T Consensus 182 -------------------------------------------------------------------------------- 181 (306)
T 4h6w_A 182 -------------------------------------------------------------------------------- 181 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCccc
Q 004824 414 DGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLY 493 (728)
Q Consensus 414 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 493 (728)
..+.+++||++|+.. .||||+|||.+|+++++.
T Consensus 182 -----------------------------~~~~~~~~s~~g~~~-----~~~di~APG~~i~s~~~~------------- 214 (306)
T 4h6w_A 182 -----------------------------DQGKPVDFSNWGDAY-----QKQGILAPGKDILGAKPN------------- 214 (306)
T ss_dssp -----------------------------TTSCBCSSSCBCHHH-----HHHEEEEECSSEEEECTT-------------
T ss_pred -----------------------------CCCCccccccccCCc-----CcceeecCCcCcccccCC-------------
Confidence 223568899999865 688999999999999885
Q ss_pred CCceeeccccchhHHHHHHHHHHhhh----CCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCcc
Q 004824 494 SNFNLMSGTSMATPHVAGVAGLLKAA----HPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPN 569 (728)
Q Consensus 494 ~~y~~~sGTSmAaP~VAG~aALl~~~----~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~ 569 (728)
+.|..++|||||||||||++|||+++ +|.|+|++||++|++||+++...+ ......||+|+||+.
T Consensus 215 ~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~-----------~~~~~~~G~G~ln~~ 283 (306)
T 4h6w_A 215 GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD-----------TDDQSRCLMGKLNIL 283 (306)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT-----------CSCGGGGTTCBCCHH
T ss_pred CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC-----------CCCCCCcceeecCHH
Confidence 68999999999999999999999864 699999999999999999875432 123347999999999
Q ss_pred ccCC
Q 004824 570 KALD 573 (728)
Q Consensus 570 ~Al~ 573 (728)
+|++
T Consensus 284 ~Av~ 287 (306)
T 4h6w_A 284 DAIE 287 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=425.90 Aligned_cols=265 Identities=28% Similarity=0.430 Sum_probs=217.4
Q ss_pred CCCCCCCCCCCC--CcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCC
Q 004824 95 LSGAWPASNYGK--GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKL 172 (728)
Q Consensus 95 ~~~~~~~~~~G~--Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~ 172 (728)
+..+|..+ +|+ ||+|||||||||++||+|.++ +...++|..+...
T Consensus 17 ~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~----- 63 (320)
T 2z30_A 17 APSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRGKVS----- 63 (320)
T ss_dssp CGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGGCCB-----
T ss_pred hHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc---------------------------cccCccccCCccC-----
Confidence 46789988 899 999999999999999999753 3334444432100
Q ss_pred ccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC-----
Q 004824 173 KVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD----- 246 (728)
Q Consensus 173 ~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~----- 246 (728)
.......|..||||||||||+|.. +..| +.||||+|+|+.+|+++..+ +..+++++||+||+++
T Consensus 64 -~~~~~~~d~~gHGT~vAgiia~~~----n~~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~ 133 (320)
T 2z30_A 64 -TKLRDCADQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVA 133 (320)
T ss_dssp -CCHHHHBCSSSHHHHHHHHHHCCS----SSBS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCS
T ss_pred -CCCCCCCCCCCCHHHHHHHHHccc----CCCc-----eEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCccccc
Confidence 000123578899999999999972 1123 38999999999999998776 6788999999999987
Q ss_pred ---------------CCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEecccc
Q 004824 247 ---------------GVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGT 311 (728)
Q Consensus 247 ---------------g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast 311 (728)
+++|||||||.. . ....+..++.++.++|++||+||||+|.....++...|++|+|||++
T Consensus 134 ~~~~~~~~~~~~~~~~~~Vin~S~G~~--~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~ 208 (320)
T 2z30_A 134 DKDGDGIIAGDPDDDAAEVISMSLGGP--A---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAID 208 (320)
T ss_dssp CTTSSSCCTTCTTSCCCSEEEECEEBS--C---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC
T ss_pred ccccccccccccccCCceEEEecCCCC--C---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeC
Confidence 999999999993 2 24556677778899999999999999988778888899999999843
Q ss_pred ccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEe
Q 004824 312 IDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFI 391 (728)
Q Consensus 312 ~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~ 391 (728)
T Consensus 209 -------------------------------------------------------------------------------- 208 (320)
T 2z30_A 209 -------------------------------------------------------------------------------- 208 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCC
Q 004824 392 SNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPG 471 (728)
Q Consensus 392 n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG 471 (728)
..+.++.||++|| +|+|||
T Consensus 209 ---------------------------------------------------~~~~~~~~S~~g~----------~v~APG 227 (320)
T 2z30_A 209 ---------------------------------------------------SNDNIASFSNRQP----------EVSAPG 227 (320)
T ss_dssp ---------------------------------------------------TTSCBCTTSCSSC----------SEEEEC
T ss_pred ---------------------------------------------------CCCCcCcccCCCC----------CEEeCC
Confidence 1236789999986 789999
Q ss_pred CceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhC-------------CCCCHHHHHHHHHhcccc
Q 004824 472 SLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAH-------------PDWSPAAIRSALVTTASP 538 (728)
Q Consensus 472 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-------------p~lsp~~ik~~L~~TA~~ 538 (728)
++|+++++. +.|..++|||||||||||++|||+|++ |.|++.+||++|++||++
T Consensus 228 ~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~ 294 (320)
T 2z30_A 228 VDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADD 294 (320)
T ss_dssp SSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBC
T ss_pred CCeEEeccC-------------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCcc
Confidence 999999875 579999999999999999999999998 999999999999999998
Q ss_pred CCCCCCccccCCCCCCCCCCCccCCCccCccccCCC
Q 004824 539 LDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDP 574 (728)
Q Consensus 539 ~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~~ 574 (728)
+...+ .+..||+|+||+.+|++.
T Consensus 295 ~~~~g-------------~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 295 LGPTG-------------WDADYGYGVVRAALAVQA 317 (320)
T ss_dssp CSSSS-------------SBTTTBTCBCCHHHHHHH
T ss_pred CCCCC-------------CCCCcCCceeCHHHHHHH
Confidence 74322 345899999999999863
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-50 Score=432.15 Aligned_cols=271 Identities=21% Similarity=0.188 Sum_probs=218.5
Q ss_pred CCCCCCCCCCCC--CcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCC
Q 004824 95 LSGAWPASNYGK--GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKL 172 (728)
Q Consensus 95 ~~~~~~~~~~G~--Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~ 172 (728)
...+|+. ++|+ ||+||||||||| +||+|.++ ++..++|..+. .
T Consensus 32 ~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~---------------------------~~~~~~~~~~~------~ 76 (347)
T 2iy9_A 32 LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS---------------------------EFAKFSFTQDG------S 76 (347)
T ss_dssp CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC---------------------------EEEEEECBTTC------C
T ss_pred hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC---------------------------cccCCcccCCC------C
Confidence 3668887 8899 999999999999 99999753 34445554321 1
Q ss_pred ccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHC------
Q 004824 173 KVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQD------ 246 (728)
Q Consensus 173 ~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~------ 246 (728)
+.+...+.|..||||||||||+|+ .|+ .||||+|+|+.+|+++..+.. ++++||+||+++
T Consensus 77 ~~~~~~~~d~~gHGT~vAgiia~~-------~g~-----~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~a~~~~~~~~~ 142 (347)
T 2iy9_A 77 PFPVKKSEALYIHGTAMASLIASR-------YGI-----YGVYPHALISSRRVIPDGVQD--SWIRAIESIMSNVFLAPG 142 (347)
T ss_dssp SSCCSSSHHHHHHHHHHHHHHHCS-------SSS-----CCSSTTCEEEEEECCSSBCTT--HHHHHHHHHHTCTTSCTT
T ss_pred CCCCCCCCCCCCcHHHHHHHHhcc-------cCC-----cccCCCCEEEEEEEecCCCHH--HHHHHHHHHHhhhhcccC
Confidence 111224567889999999999997 122 899999999999999775443 999999999999
Q ss_pred CCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCC-------CCccccCCC----------ceEEecc
Q 004824 247 GVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPS-------YWTLINGAP----------WLLTVGA 309 (728)
Q Consensus 247 g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~ap----------~vitVga 309 (728)
|++|||||||. .........+..++..+.++|++||+||||+|.. ...++...+ ++|+|||
T Consensus 143 ~~~Vin~S~G~--~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga 220 (347)
T 2iy9_A 143 EEKIINISGGQ--KGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAA 220 (347)
T ss_dssp EEEEEEESSCB--CCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEE
T ss_pred CceEEEecccc--CCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEE
Confidence 99999999998 3334466778888889999999999999999975 345667778 9999998
Q ss_pred ccc--cceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceE
Q 004824 310 GTI--DREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLG 387 (728)
Q Consensus 310 st~--~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g 387 (728)
++. +...
T Consensus 221 ~~~~~~g~~----------------------------------------------------------------------- 229 (347)
T 2iy9_A 221 LAQYRKGET----------------------------------------------------------------------- 229 (347)
T ss_dssp ECCCCTTSC-----------------------------------------------------------------------
T ss_pred cccCCCCce-----------------------------------------------------------------------
Confidence 643 1100
Q ss_pred EEEecCCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcE
Q 004824 388 AVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDI 467 (728)
Q Consensus 388 ~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI 467 (728)
......++.||++||+ ||||
T Consensus 230 -----------------------------------------------------~~~~~~~~~fS~~G~~-------~~di 249 (347)
T 2iy9_A 230 -----------------------------------------------------PVLHGGGITGSRFGNN-------WVDI 249 (347)
T ss_dssp -----------------------------------------------------CCBCCCSSSCBCBCTT-------TCSE
T ss_pred -----------------------------------------------------ecccCCCCCCCCCCCC-------CCEE
Confidence 0011245799999985 7899
Q ss_pred EeCCCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccc
Q 004824 468 LAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIK 547 (728)
Q Consensus 468 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~ 547 (728)
+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||++....+
T Consensus 250 ~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~---- 312 (347)
T 2iy9_A 250 AAPGQNITFLRPD-------------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV---- 312 (347)
T ss_dssp EEECSSEEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT----
T ss_pred EeCCCCeEeecCC-------------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC----
Confidence 9999999999885 68999999999999999999999999999999999999999999875422
Q ss_pred cCCCCCCCCCCCccCCCccCccccCCC
Q 004824 548 DASNNNFPASPLDMGAGHINPNKALDP 574 (728)
Q Consensus 548 d~~~~~~~~~~~~~G~G~in~~~Al~~ 574 (728)
...+|+|+||+.+|++.
T Consensus 313 ----------~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 313 ----------DKVTEGRVLNAEKAISM 329 (347)
T ss_dssp ----------TTSGGGEECCHHHHHHH
T ss_pred ----------CccccCCEecHHHHHHH
Confidence 24899999999999874
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=422.14 Aligned_cols=299 Identities=27% Similarity=0.374 Sum_probs=220.3
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCcee---eeeeeccccccccCCC
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKL---IGARFFNKGLIANNPK 171 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~ki---ig~~~~~~~~~~~~~~ 171 (728)
+..+|+.+++|+||+||||||||+ +||+|.++-. ..|+-.......+. .+.+. .....+.+.+.. ..
T Consensus 21 ~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~----~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~--~~ 90 (340)
T 3lpc_A 21 ADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVL----PGYDFISNSQISLD---GDGRDADPFDEGDWFDNWAC--GG 90 (340)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBC----CCEECCCCHHHHCS---SSSSBSCCBCCCCCBCTTTT--SC
T ss_pred HHHHHHhcCCCCCeEEEEEcCCCC-CChhhhcccc----cCccccCCcccccc---CCCccCCccccccccccccc--cC
Confidence 466999999999999999999998 9999986411 11110000000000 00000 000000000000 01
Q ss_pred CccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH------
Q 004824 172 LKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ------ 245 (728)
Q Consensus 172 ~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~------ 245 (728)
.+.+.....|..||||||||||+|...+.. | +.||||+|+|+.+|++...++..++++++|+||++
T Consensus 91 ~~~~~~~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~ 162 (340)
T 3lpc_A 91 RPDPRKERSDSSWHGSHVAGTIAAVTNNRI---G-----VAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGI 162 (340)
T ss_dssp TTCGGGSCBCCCCHHHHHHHHHHCCCSSSS---S-----CCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTS
T ss_pred CCCcccCCCCCCCCHHHHHHHHHccCCCCC---c-----ceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhccccccc
Confidence 122233467889999999999999865432 2 28999999999999999888889999999999998
Q ss_pred ----CCCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeeEE
Q 004824 246 ----DGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW-TLINGAPWLLTVGAGTIDREFEGSL 320 (728)
Q Consensus 246 ----~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~ap~vitVgast~~~~~~~~~ 320 (728)
.+++|||||||.. . .....+..++..+.++|++||+||||+|.... ..+...+++|+|||++
T Consensus 163 ~~~~~~~~Vin~S~G~~--~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~--------- 229 (340)
T 3lpc_A 163 PENRNPAKVINMSLGSD--G--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATT--------- 229 (340)
T ss_dssp CCCSSCCSEEEECCCEE--S--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEEC---------
T ss_pred ccccCCCeEEEeCcCCC--C--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCC---------
Confidence 8999999999983 2 12345666777888999999999999997653 4577889999999843
Q ss_pred EcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccc
Q 004824 321 TLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVY 400 (728)
Q Consensus 321 ~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 400 (728)
T Consensus 230 -------------------------------------------------------------------------------- 229 (340)
T 3lpc_A 230 -------------------------------------------------------------------------------- 229 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCC
Q 004824 401 IRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSP 480 (728)
Q Consensus 401 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~ 480 (728)
..+.++.||++|| ||||+|||.+|+++++.
T Consensus 230 ------------------------------------------~~~~~~~~S~~g~--------~~di~ApG~~i~s~~~~ 259 (340)
T 3lpc_A 230 ------------------------------------------SRGIRASFSNYGV--------DVDLAAPGQDILSTVDS 259 (340)
T ss_dssp ------------------------------------------TTSSBCTTCCBST--------TCCEEEECSSEEEEEES
T ss_pred ------------------------------------------CCCCcCCCCCCCC--------CceEEecCCCeecccCC
Confidence 2236789999996 67999999999999875
Q ss_pred CCCccccccCcccCCceeeccccchhHHHHHHHHHHhhh-C---CCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCC
Q 004824 481 ISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAA-H---PDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPA 556 (728)
Q Consensus 481 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-~---p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~ 556 (728)
.... ...+.|..++|||||||||||++|||+|+ + |.|++++||++|++||++... .
T Consensus 260 ~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~--------------~ 319 (340)
T 3lpc_A 260 GTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG--------------R 319 (340)
T ss_dssp CSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS--------------C
T ss_pred CCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC--------------C
Confidence 3211 11246999999999999999999999998 5 999999999999999988742 1
Q ss_pred CCCccCCCccCccccCCC
Q 004824 557 SPLDMGAGHINPNKALDP 574 (728)
Q Consensus 557 ~~~~~G~G~in~~~Al~~ 574 (728)
....||+|+||+.+||+.
T Consensus 320 ~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 320 LDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp CSSCCCSSBCCHHHHHHH
T ss_pred CCCCcccceecHHHHHHH
Confidence 344899999999999874
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-48 Score=429.98 Aligned_cols=291 Identities=26% Similarity=0.336 Sum_probs=222.9
Q ss_pred CCCCC-CCCCCCCcEEEEEccCCCC------CCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeecccccccc
Q 004824 96 SGAWP-ASNYGKGVIIGLVDTGIWP------ESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIAN 168 (728)
Q Consensus 96 ~~~~~-~~~~G~Gv~VgVIDtGid~------~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~ 168 (728)
+.+|. .+++|+||+|||||||||+ .||+|.++ ++..++|.+.
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~---------------------------i~~~~~~~~~---- 59 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK---------------------------ITALYALGRT---- 59 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC---------------------------EEEEEETTTT----
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC---------------------------EeeeccccCC----
Confidence 56887 6999999999999999999 79998753 4444455332
Q ss_pred CCCCccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCC---ChHHHHHHHHHHHH
Q 004824 169 NPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV---YSSDVVAAIDQALQ 245 (728)
Q Consensus 169 ~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~---~~~~i~~ai~~a~~ 245 (728)
..+.|..||||||||||+|+.. + +.||||+|+|+.+|+++..+. ...++.++|++|++
T Consensus 60 --------~~~~d~~gHGT~VAgiiag~g~------~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~ 120 (434)
T 1wmd_A 60 --------NNANDTNGHGTHVAGSVLGNGS------T-----NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYS 120 (434)
T ss_dssp --------TCCCCSSSHHHHHHHHHHCCSS------S-----SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHH
T ss_pred --------CCCCCCCCcHHHHHHHHHcCCC------C-----ceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHh
Confidence 2466789999999999999642 1 379999999999999987663 45689999999999
Q ss_pred CCCcEEEeccccCCCCCCChhhHHHHHHHHH-HhCCcEEEEecCCCCCCCC--ccccCCCceEEeccccccceeeeEEEc
Q 004824 246 DGVDVLSLSLGLSLNGIFLEDDAIAVATFAA-MEKGVLVVASAGNDGPSYW--TLINGAPWLLTVGAGTIDREFEGSLTL 322 (728)
Q Consensus 246 ~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~ap~vitVgast~~~~~~~~~~~ 322 (728)
+|++|||||||.. ....+ +....++.++ .++|++||+||||+|.... ..+..++++|+|||++..+...
T Consensus 121 ~g~~Vin~S~G~~--~~~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~----- 192 (434)
T 1wmd_A 121 AGARIHTNSWGAA--VNGAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF----- 192 (434)
T ss_dssp TTCSEEEECCCBC--CTTCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-----
T ss_pred cCCeEEEecCCCC--cCCcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc-----
Confidence 9999999999983 21111 2334444444 5899999999999998643 4567789999999965332100
Q ss_pred CCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccc
Q 004824 323 GNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIR 402 (728)
Q Consensus 323 ~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 402 (728)
+.
T Consensus 193 -------------~~----------------------------------------------------------------- 194 (434)
T 1wmd_A 193 -------------GS----------------------------------------------------------------- 194 (434)
T ss_dssp -------------CG-----------------------------------------------------------------
T ss_pred -------------Cc-----------------------------------------------------------------
Confidence 00
Q ss_pred cCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCC
Q 004824 403 SSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPIS 482 (728)
Q Consensus 403 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~ 482 (728)
.....+.+++||++||+.+++ +||||+|||++|+++++...
T Consensus 195 -------------------------------------~~~~~~~~a~fS~~G~~~~g~--~kpdi~ApG~~i~s~~~~~~ 235 (434)
T 1wmd_A 195 -------------------------------------YADNINHVAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLA 235 (434)
T ss_dssp -------------------------------------GGSCTTSBCTTSCCCCCTTSC--CCCCEEEECSSEEEECCTTC
T ss_pred -------------------------------------ccCCCCccccccCCCCCCCCC--CCceEEcCCCCeEecCCCCC
Confidence 011245789999999999866 99999999999999986532
Q ss_pred CccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCC-----CHHHHHHHHHhccccCCCCCCccccCCCCCCCCC
Q 004824 483 SVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDW-----SPAAIRSALVTTASPLDNTLSHIKDASNNNFPAS 557 (728)
Q Consensus 483 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~l-----sp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~ 557 (728)
....+ .....+.|..++|||||||||||++|||+|++|++ ++++||++|++||+++.. ...
T Consensus 236 ~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~-------------~~~ 301 (434)
T 1wmd_A 236 PDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-------------GYP 301 (434)
T ss_dssp CGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-------------CSS
T ss_pred CCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC-------------CCC
Confidence 11100 00113689999999999999999999999998865 899999999999987532 235
Q ss_pred CCccCCCccCccccCCCC
Q 004824 558 PLDMGAGHINPNKALDPG 575 (728)
Q Consensus 558 ~~~~G~G~in~~~Al~~~ 575 (728)
++.||||+||+.+|++..
T Consensus 302 ~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 302 NGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp CTTTTTCBCCHHHHHTCE
T ss_pred CccCCcCeEeHHHhcccc
Confidence 568999999999999754
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=396.02 Aligned_cols=236 Identities=30% Similarity=0.416 Sum_probs=201.5
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccC
Q 004824 96 SGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVR 175 (728)
Q Consensus 96 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 175 (728)
..+|..+++|+||+|||||||||++||+|.++ ++..++|.+..
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~~---------- 61 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR---------------------------SVSGYDFVDND---------- 61 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC---------------------------EEEEEETTTTB----------
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC---------------------------ccccccccCCC----------
Confidence 56899999999999999999999999999753 34445554321
Q ss_pred CCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC--CCcEEE
Q 004824 176 MNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD--GVDVLS 252 (728)
Q Consensus 176 ~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~dVIN 252 (728)
..+.|..+|||||||||+|+. .||||+|+|+.+|+++..+ +..+++++||+|++++ +++|||
T Consensus 62 -~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin 126 (284)
T 1sh7_A 62 -ADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVAN 126 (284)
T ss_dssp -SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEE
T ss_pred -CCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEE
Confidence 245678999999999999873 6999999999999998766 6788999999999984 799999
Q ss_pred eccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeeEEEcCCCcEEeee
Q 004824 253 LSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY-WTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFK 331 (728)
Q Consensus 253 ~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~ 331 (728)
||||. . ....+..++.++.++|++||+||||+|... ...+...|++|+||+++
T Consensus 127 ~S~G~--~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------------- 180 (284)
T 1sh7_A 127 MSLGG--G----QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTT-------------------- 180 (284)
T ss_dssp ECCCB--S----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEEC--------------------
T ss_pred eCCCC--C----CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEec--------------------
Confidence 99999 3 245677778889999999999999999764 34567789999999843
Q ss_pred ecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEee
Q 004824 332 SLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFIN 411 (728)
Q Consensus 332 s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~ 411 (728)
T Consensus 181 -------------------------------------------------------------------------------- 180 (284)
T 1sh7_A 181 -------------------------------------------------------------------------------- 180 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCc
Q 004824 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGL 491 (728)
Q Consensus 412 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 491 (728)
..+.+++||++||. |||+|||++|+++++.
T Consensus 181 -------------------------------~~~~~~~~S~~G~~--------~di~ApG~~i~s~~~~----------- 210 (284)
T 1sh7_A 181 -------------------------------SSDSRSSFSNWGSC--------VDLFAPGSQIKSAWYD----------- 210 (284)
T ss_dssp -------------------------------TTSBBCTTCCBSTT--------CCEEEECSSEEEECTT-----------
T ss_pred -------------------------------CCCCcCcccCCCCc--------cEEEeccCCeEEecCC-----------
Confidence 12367899999985 4999999999999875
Q ss_pred ccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCC
Q 004824 492 LYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDN 541 (728)
Q Consensus 492 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~ 541 (728)
+.|..++|||||||||||++|||+|++|+|++++||++|++||++...
T Consensus 211 --~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 258 (284)
T 1sh7_A 211 --GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKV 258 (284)
T ss_dssp --SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred --CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCc
Confidence 589999999999999999999999999999999999999999987643
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=454.66 Aligned_cols=362 Identities=24% Similarity=0.281 Sum_probs=245.0
Q ss_pred CCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC---CChHHHHHHHHHHHH-----CCCcEE
Q 004824 180 RDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG---VYSSDVVAAIDQALQ-----DGVDVL 251 (728)
Q Consensus 180 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g---~~~~~i~~ai~~a~~-----~g~dVI 251 (728)
.|+.||||||||||||.. ++. | +.||||+|+|+.+|+++..+ .....++.+|.+|++ .|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~~---g-----~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SSR---D-----VDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SSS---S-----SCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CCC---C-----ceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478899999999999986 221 2 38999999999999997643 255778888888887 799999
Q ss_pred EeccccCCCCCCChhhHHHHHHHHHH-hCCcEEEEecCCCCCCCCc--ccc--CCCceEEeccccccceeeeEEEcCCCc
Q 004824 252 SLSLGLSLNGIFLEDDAIAVATFAAM-EKGVLVVASAGNDGPSYWT--LIN--GAPWLLTVGAGTIDREFEGSLTLGNGV 326 (728)
Q Consensus 252 N~SlG~~~~~~~~~~~~~~~~~~~a~-~~Gi~vV~AAGN~g~~~~~--~~~--~ap~vitVgast~~~~~~~~~~~~~g~ 326 (728)
|||||.. ......+.+..++.++. ++|++||+||||+|....+ .+. .++++|+|||++.+.........
T Consensus 338 NmS~G~~--~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~---- 411 (1354)
T 3lxu_X 338 NMSYGEH--ANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM---- 411 (1354)
T ss_dssp EECCCCC--CSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC--------
T ss_pred EcCCccC--CCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc----
Confidence 9999994 33233456666777775 8999999999999986543 344 37999999996543221000000
Q ss_pred EEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCcc
Q 004824 327 QINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFP 406 (728)
Q Consensus 327 ~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p 406 (728)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccc
Q 004824 407 AAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAE 486 (728)
Q Consensus 407 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 486 (728)
.....+.+++|||+||+.+++ +||||+|||++|+++....
T Consensus 412 ---------------------------------~~~~~g~~asFSS~GPt~dg~--~KpDIaAPG~~I~St~~~~----- 451 (1354)
T 3lxu_X 412 ---------------------------------REKLPGNVYTWTSRDPCIDGG--QGVTVCAPGGAIASVPQFT----- 451 (1354)
T ss_dssp ---------------------------------------CCCCCCCCSCCSSSS--CCEEEEEEC---------------
T ss_pred ---------------------------------ccCCCCccccccCCCCCccCC--CcceEEecCceEEEeecCC-----
Confidence 011224789999999998866 9999999999999875532
Q ss_pred cccCcccCCceeeccccchhHHHHHHHHHHhh----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccC
Q 004824 487 VQSGLLYSNFNLMSGTSMATPHVAGVAGLLKA----AHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMG 562 (728)
Q Consensus 487 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G 562 (728)
.+.|..++|||||||||||++|||++ .+|+|++.+||++|++||++... ..++.||
T Consensus 452 ------~~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~--------------~~~~~~G 511 (1354)
T 3lxu_X 452 ------MSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY--------------VDPFAQG 511 (1354)
T ss_dssp -----------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT--------------SCTTTSS
T ss_pred ------CCceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC--------------CCccccc
Confidence 25789999999999999999999986 79999999999999999988753 2345899
Q ss_pred CCccCccccCCCCceecCChhhHHHHHHhcCCCccceeeccccccccCCCCCCCCCCceeeeccCCCCCCCCceeEEEEE
Q 004824 563 AGHINPNKALDPGLVYDATAEDYIKLLCAMNYKPEQIRIFTKSSQKCNNRSLDLNYPSFITFFNDYDSSSDEKVVKEFWR 642 (728)
Q Consensus 563 ~G~in~~~Al~~~lv~~~~~~dy~~~lc~~~~~~~~~~~~~~~~~~c~~~~~~ln~psi~~~~~~~~~~~~~~~~~t~~r 642 (728)
+|+||+.+|++..+.|+....+|+.|+|..+..... .++..... | +. . ...+++++-
T Consensus 512 ~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~r-gIylR~~~-~---------~~-----------~-~~~tv~V~p 568 (1354)
T 3lxu_X 512 HGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADK-GIHLRQGV-Q---------RN-----------S-IDYNVYIEP 568 (1354)
T ss_dssp SSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBS-SEEECSSC-C---------CS-----------C-EEEEEEEEE
T ss_pred CCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCC-ceEEeccc-c---------CC-----------c-eEEEEEEee
Confidence 999999999999999999999999999987643211 11111000 0 00 0 001222332
Q ss_pred EEEeC---CCC-Ce--EEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEeC---CCCcE
Q 004824 643 TVTNA---EEV-GT--AYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDD---DGRYE 713 (728)
Q Consensus 643 tvtn~---g~~-~~--ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~---~~~~~ 713 (728)
+..|. ... .. .-++.+...+ --|+ -|..|.+. ++.++|.|++++. ....+..++.|..-|. ..++.
T Consensus 569 ~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~-~p~~l~l~--~~~r~~~v~vDp~-~L~~G~h~~~v~~~D~~~~~~gp~ 643 (1354)
T 3lxu_X 569 IFYNDKEADPKDKFNFNVRLNLIASQ-PWVQ-CGAFLDLS--YGTRSIAVRVDPT-GLQPGVHSAVIRAYDTDCVQKGSL 643 (1354)
T ss_dssp EESSCSCSSSTTCSCCCCEEEEEESS-TTEE-ECSCEECT--TSCEEEEEEECGG-GCCSEEEEEEEEEEESSCTTSCCS
T ss_pred eecCcccCChhhccceEEEEEEecCC-Ccee-cccceeec--CCCceEEEEECCC-CCCCcceeEEEEEEEcCCcccCce
Confidence 33221 111 11 1222222221 1222 27777664 7888999999984 3566889999987764 34699
Q ss_pred EEeEEEEEeeC
Q 004824 714 VRSPIVATNLV 724 (728)
Q Consensus 714 v~~P~~~~~~~ 724 (728)
.|+||.|.-+.
T Consensus 644 f~ipvTv~~P~ 654 (1354)
T 3lxu_X 644 FEIPVTVVQPH 654 (1354)
T ss_dssp EEEEEEEEECB
T ss_pred EEeeEEEEeee
Confidence 99999987654
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=391.77 Aligned_cols=237 Identities=32% Similarity=0.411 Sum_probs=200.4
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccC
Q 004824 96 SGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVR 175 (728)
Q Consensus 96 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 175 (728)
..+|..+++|+||+|+|||||||++||+|.++ +...++|.++.
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~---------------------------~~~~~d~~~~~---------- 63 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR---------------------------ASSGYDFIDND---------- 63 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTTTB----------
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc---------------------------cccCeecCCCC----------
Confidence 46899999999999999999999999999753 33344554321
Q ss_pred CCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHH--CCCcEEE
Q 004824 176 MNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQ--DGVDVLS 252 (728)
Q Consensus 176 ~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~--~g~dVIN 252 (728)
..+.|..+|||||||||+|+. .||||+|+|+.+|++++.+ +..+++++||+|+++ .+++|||
T Consensus 64 -~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin 128 (278)
T 2b6n_A 64 -YDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVAN 128 (278)
T ss_dssp -SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEE
T ss_pred -CCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEE
Confidence 235688999999999999862 6999999999999998766 778899999999998 5999999
Q ss_pred eccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeeEEEcCCCcEEeee
Q 004824 253 LSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW-TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFK 331 (728)
Q Consensus 253 ~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~ 331 (728)
||||.. . ...+..++.++.++|++||+||||+|.... ..+...|++|+|||++
T Consensus 129 ~S~G~~--~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------------- 182 (278)
T 2b6n_A 129 MSLGGG--A----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTT-------------------- 182 (278)
T ss_dssp ECCCEE--C----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC--------------------
T ss_pred ECCCCC--c----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeC--------------------
Confidence 999993 2 356677778889999999999999997653 3567789999999843
Q ss_pred ecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEee
Q 004824 332 SLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFIN 411 (728)
Q Consensus 332 s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~ 411 (728)
T Consensus 183 -------------------------------------------------------------------------------- 182 (278)
T 2b6n_A 183 -------------------------------------------------------------------------------- 182 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCc
Q 004824 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGL 491 (728)
Q Consensus 412 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 491 (728)
..+.++.||++||. |||+|||.+|++++...
T Consensus 183 -------------------------------~~~~~~~~S~~G~~--------~di~ApG~~i~s~~~~~---------- 213 (278)
T 2b6n_A 183 -------------------------------SNDSRSSFSNYGTC--------LDIYAPGSSITSSWYTS---------- 213 (278)
T ss_dssp -------------------------------TTSBBCTTCCBSTT--------CCEEEECSSEEEECTTS----------
T ss_pred -------------------------------CCCCcCCcCCCCCC--------CeEEeCCCCeECcccCC----------
Confidence 12367899999974 59999999999988642
Q ss_pred ccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCC
Q 004824 492 LYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLD 540 (728)
Q Consensus 492 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~ 540 (728)
.+.|..++|||||||||||++|||+|++|+|++.+||++|++||++..
T Consensus 214 -~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 214 -NSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp -TTCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred -CCCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 257899999999999999999999999999999999999999998753
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=390.75 Aligned_cols=237 Identities=29% Similarity=0.394 Sum_probs=202.3
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccC
Q 004824 96 SGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVR 175 (728)
Q Consensus 96 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 175 (728)
..+|..+++|+||+|||||||||++||+|.++ +...++|..
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~------------ 61 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGR---------------------------ARVGYDALG------------ 61 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTS------------
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccC---------------------------eeccccCCC------------
Confidence 56899999999999999999999999999753 333344433
Q ss_pred CCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC--CCcEEE
Q 004824 176 MNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD--GVDVLS 252 (728)
Q Consensus 176 ~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~dVIN 252 (728)
....|..||||||||||+|.. .||||+|+|+.+|+++..+ ...++++++|+|+++. +++|||
T Consensus 62 -~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin 126 (276)
T 4dzt_A 62 -GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVAN 126 (276)
T ss_dssp -SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEE
T ss_pred -CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEE
Confidence 235678899999999999873 6999999999999998776 7888999999999987 899999
Q ss_pred eccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc-cccCCCceEEeccccccceeeeEEEcCCCcEEeee
Q 004824 253 LSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT-LINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFK 331 (728)
Q Consensus 253 ~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~ 331 (728)
||||.. . ...+..++..+.++|+++|+||||+|..... .+...+++|+|||.+
T Consensus 127 ~S~g~~--~----~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------------- 180 (276)
T 4dzt_A 127 MSLGGG--V----STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATT-------------------- 180 (276)
T ss_dssp ECCCEE--C----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC--------------------
T ss_pred ECCCCC--C----CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEEC--------------------
Confidence 999983 2 4567778888999999999999999976543 367889999999842
Q ss_pred ecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEee
Q 004824 332 SLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFIN 411 (728)
Q Consensus 332 s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~ 411 (728)
T Consensus 181 -------------------------------------------------------------------------------- 180 (276)
T 4dzt_A 181 -------------------------------------------------------------------------------- 180 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCc
Q 004824 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGL 491 (728)
Q Consensus 412 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 491 (728)
..+.+++||++||.. ||+|||.+|++++...
T Consensus 181 -------------------------------~~~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~---------- 211 (276)
T 4dzt_A 181 -------------------------------SSDARASFSNYGSCV--------DLFAPGASIPSAWYTS---------- 211 (276)
T ss_dssp -------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEECTTS----------
T ss_pred -------------------------------CCCCcCCcCCCCCCc--------eEEeCCCCeEccccCC----------
Confidence 223678999999864 9999999999998753
Q ss_pred ccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCC
Q 004824 492 LYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNT 542 (728)
Q Consensus 492 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~ 542 (728)
...|..++|||||||+|||++|||+|++|++++++||++|++||++....
T Consensus 212 -~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 261 (276)
T 4dzt_A 212 -DTATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRLS 261 (276)
T ss_dssp -SSCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCB
T ss_pred -CCceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCccC
Confidence 25799999999999999999999999999999999999999999987543
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=391.53 Aligned_cols=228 Identities=30% Similarity=0.396 Sum_probs=194.8
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCC
Q 004824 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMN 177 (728)
Q Consensus 98 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 177 (728)
.|. ..+|+||+|+|||||||++||+|.++ +...++|..
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~---------------------------~~~~~~~~~-------------- 61 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYYY-------------- 61 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESSS--------------
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc---------------------------cccccCCCC--------------
Confidence 454 37899999999999999999999753 333444431
Q ss_pred CCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCC-------c
Q 004824 178 SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGV-------D 249 (728)
Q Consensus 178 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~-------d 249 (728)
.+.|..+|||||||||+|+. .||||+|+|+.+|+++..+ +..+++++||+|++++++ +
T Consensus 62 ~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~ 127 (279)
T 2pwa_A 62 SSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGV 127 (279)
T ss_dssp CSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEE
T ss_pred CCCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCcc
Confidence 25678899999999999862 7999999999999998876 788999999999999887 9
Q ss_pred EEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeeEEEcCCCcEE
Q 004824 250 VLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW-TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQI 328 (728)
Q Consensus 250 VIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~ 328 (728)
|||||||.. ....+..++..+.++|++||+||||+|.... ..+...|++|+|||++
T Consensus 128 Vin~S~G~~------~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~----------------- 184 (279)
T 2pwa_A 128 VASLSLGGG------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD----------------- 184 (279)
T ss_dssp EEEECCCEE------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC-----------------
T ss_pred EEEecCCCC------CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEec-----------------
Confidence 999999982 2456777888899999999999999998653 4567789999999843
Q ss_pred eeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEE
Q 004824 329 NFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAA 408 (728)
Q Consensus 329 ~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~ 408 (728)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T 2pwa_A 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccc
Q 004824 409 FINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQ 488 (728)
Q Consensus 409 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 488 (728)
..+.++.||++||. |||+|||++|+++++.
T Consensus 185 ----------------------------------~~~~~~~~S~~G~~--------~di~APG~~i~s~~~~-------- 214 (279)
T 2pwa_A 185 ----------------------------------RYDRRSSFSNYGSV--------LDIFGPGTDILSTWIG-------- 214 (279)
T ss_dssp ----------------------------------TTSBBCTTCCBSTT--------CCEEEECSSEEEEETT--------
T ss_pred ----------------------------------CCCCcCCcCCCCCc--------ceEEEecCCeEEeecC--------
Confidence 12367899999985 4999999999999885
Q ss_pred cCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCC
Q 004824 489 SGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLD 540 (728)
Q Consensus 489 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~ 540 (728)
+.|..++|||||||||||++|||+|+ |++++.+||++|++||++..
T Consensus 215 -----~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~ 260 (279)
T 2pwa_A 215 -----GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGD 260 (279)
T ss_dssp -----TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESC
T ss_pred -----CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCcccc
Confidence 57899999999999999999999999 99999999999999998763
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=415.55 Aligned_cols=292 Identities=16% Similarity=0.132 Sum_probs=212.1
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
+..+|..+++|+||+|||||||||++||+|.+.-. ....++|.++. ..+.
T Consensus 27 ~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~-------------------------~~~~~d~~~~~-----~~p~ 76 (471)
T 1p8j_A 27 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD-------------------------PGASFDVNDQD-----PDPQ 76 (471)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC-------------------------GGGCEETTTTB-----SCCC
T ss_pred hHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC-------------------------ccCcccccCCC-----CCCC
Confidence 45699999999999999999999999999985300 00123333221 0111
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH-CCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ-DGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~ 253 (728)
+...+.|..+|||||||||||...++. | +.||||+|+|+.+|+++ +..+++++||+++++ ++++||||
T Consensus 77 ~~~~~~d~~gHGT~vAGiiaa~~~n~~---g-----~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~Vin~ 145 (471)
T 1p8j_A 77 PRYTQMNDNRHGTRCAGEVAAVANNGV---C-----GVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSA 145 (471)
T ss_dssp CCCCTTCTTCHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEEEE
T ss_pred CccCCCCCCCcHHHHHHHHHeeccCCC---C-----CEEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCeEEEe
Confidence 112456889999999999999754332 2 28999999999999985 446789999999999 99999999
Q ss_pred ccccCCCCCC---ChhhHHHHHHHHHH-----hCCcEEEEecCCCCCCCCc----cccCCCceEEeccccccceeeeEEE
Q 004824 254 SLGLSLNGIF---LEDDAIAVATFAAM-----EKGVLVVASAGNDGPSYWT----LINGAPWLLTVGAGTIDREFEGSLT 321 (728)
Q Consensus 254 SlG~~~~~~~---~~~~~~~~~~~~a~-----~~Gi~vV~AAGN~g~~~~~----~~~~ap~vitVgast~~~~~~~~~~ 321 (728)
|||.. .... .....+..++..+. .+|++||+||||+|..... ....++++|+|||++
T Consensus 146 S~G~~-~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~---------- 214 (471)
T 1p8j_A 146 SWGPE-DDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT---------- 214 (471)
T ss_dssp CCBSC-CSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC----------
T ss_pred ccCcC-CCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEeccc----------
Confidence 99984 1110 11223334444443 4799999999999976322 123458999999843
Q ss_pred cCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCcccccc
Q 004824 322 LGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYI 401 (728)
Q Consensus 322 ~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 401 (728)
T Consensus 215 -------------------------------------------------------------------------------- 214 (471)
T 1p8j_A 215 -------------------------------------------------------------------------------- 214 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCC
Q 004824 402 RSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPI 481 (728)
Q Consensus 402 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 481 (728)
..+.++.||++||..... .+|...+||..|+++....
T Consensus 215 -----------------------------------------~~g~~a~~S~~g~~~~~~--~~~~~~~~g~~i~st~~~~ 251 (471)
T 1p8j_A 215 -----------------------------------------QFGNVPWYSEACSSTLAT--TYSSGNQNEKQIVTTDLRQ 251 (471)
T ss_dssp -----------------------------------------TTSCCCTTCCBCTTCCEE--EECCCSTTSCCEEEEETTT
T ss_pred -----------------------------------------CCCCcccccCCCCcceEE--eCCCCCCCCCCEEEeeCCC
Confidence 123678999999987421 3445555567899987642
Q ss_pred CCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcc
Q 004824 482 SSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDM 561 (728)
Q Consensus 482 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~ 561 (728)
+.|..++|||||||||||++|||+|++|+|++++||++|++||++............ ........|
T Consensus 252 ------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~--~g~~~~~~~ 317 (471)
T 1p8j_A 252 ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNG--VGRKVSHSY 317 (471)
T ss_dssp ------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECT--TSCEEBTTT
T ss_pred ------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecC--CCcccCCCC
Confidence 568999999999999999999999999999999999999999998765332221111 111234589
Q ss_pred CCCccCccccCCCC
Q 004824 562 GAGHINPNKALDPG 575 (728)
Q Consensus 562 G~G~in~~~Al~~~ 575 (728)
|||+||+.+|++..
T Consensus 318 G~G~vda~~Av~~a 331 (471)
T 1p8j_A 318 GYGLLDAGAMVALA 331 (471)
T ss_dssp BTCBCCHHHHHHHH
T ss_pred CCEEEcHhHHHHHh
Confidence 99999999999844
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-45 Score=405.02 Aligned_cols=279 Identities=21% Similarity=0.206 Sum_probs=200.8
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCC
Q 004824 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMN 177 (728)
Q Consensus 98 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 177 (728)
.|..+++|+||+|+|||||||++||+|.++- ....+.+....+ + .....
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~--------------------------~~~~~~~v~~~d---g--~~f~~ 66 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRV--------------------------MVTDFENVPEED---G--TRFHR 66 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTE--------------------------EEEEEECCCCCC-----------
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHcccc--------------------------cccCcccccCCC---C--ccccC
Confidence 7888999999999999999999999998640 011111110000 0 00012
Q ss_pred CCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC------CCcE
Q 004824 178 SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD------GVDV 250 (728)
Q Consensus 178 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~------g~dV 250 (728)
...|..||||||||||+|+. .||||+|+|+.+|+++..| ++.+++++||+|+++. +++|
T Consensus 67 ~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~V 132 (546)
T 2qtw_B 67 QASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLV 132 (546)
T ss_dssp -CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEE
T ss_pred CCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeE
Confidence 35678999999999999873 6999999999999998776 6788999999999984 8999
Q ss_pred EEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeeEEEcCCCcEEe
Q 004824 251 LSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW-TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQIN 329 (728)
Q Consensus 251 IN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~ 329 (728)
||||||. . +...+..++..+.++|++||+||||+|.... ..+...|++|+|||++.+...
T Consensus 133 INmSlGg--~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~------------- 193 (546)
T 2qtw_B 133 VLLPLAG--G----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP------------- 193 (546)
T ss_dssp EEECEEE--E----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-------------
T ss_pred EEecCCC--C----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-------------
Confidence 9999998 2 2456777888899999999999999997643 446788999999995422110
Q ss_pred eeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEE
Q 004824 330 FKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAF 409 (728)
Q Consensus 330 g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~ 409 (728)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcccccc
Q 004824 410 INVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQS 489 (728)
Q Consensus 410 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 489 (728)
...-..||++|| ||||+|||++|+++++..
T Consensus 194 ----------------------------------a~~s~~fSn~G~--------~vDI~APG~~I~St~~~~-------- 223 (546)
T 2qtw_B 194 ----------------------------------VTLGTLGTNFGR--------CVDLFAPGEDIIGASSDC-------- 223 (546)
T ss_dssp ----------------------------------CEETTEECCBST--------TCCEEEECSSEEEECTTS--------
T ss_pred ----------------------------------ccccCCcCCCCC--------cceEEecCccEEeeccCC--------
Confidence 000123899996 569999999999998753
Q ss_pred CcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccc-------cCCCCCCCCCCCccC
Q 004824 490 GLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIK-------DASNNNFPASPLDMG 562 (728)
Q Consensus 490 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~-------d~~~~~~~~~~~~~G 562 (728)
.+.|..++|||||||||||++|||+|++|+|+|++||++|++||.+.......+. .+.....+...+.+|
T Consensus 224 ---~~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G 300 (546)
T 2qtw_B 224 ---STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAG 300 (546)
T ss_dssp ---TTCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTCC--
T ss_pred ---CCcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCccchhccCCcccccC
Confidence 2578999999999999999999999999999999999999999987543221110 000001122345678
Q ss_pred CCc--cCccccCC
Q 004824 563 AGH--INPNKALD 573 (728)
Q Consensus 563 ~G~--in~~~Al~ 573 (728)
+|+ .++..+..
T Consensus 301 ~~l~~~~~w~a~s 313 (546)
T 2qtw_B 301 WQLFCRTVWSAHS 313 (546)
T ss_dssp CCCEEEEEECCCC
T ss_pred CCcchhchhccCC
Confidence 888 77666654
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-45 Score=381.81 Aligned_cols=229 Identities=30% Similarity=0.407 Sum_probs=195.3
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCC
Q 004824 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMN 177 (728)
Q Consensus 98 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 177 (728)
+|... +|+||+|||||||||++||+|.++ +...++|..+
T Consensus 25 ~~~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~------------- 63 (279)
T 3f7m_A 25 AYDTS-AGAGACVYVIDTGVEDTHPDFEGR---------------------------AKQIKSYAST------------- 63 (279)
T ss_dssp EECTT-TTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEECSSS-------------
T ss_pred eecCC-CCCCCEEEEEcCCCCCCChhhccc---------------------------cccccCCCCC-------------
Confidence 56665 899999999999999999999753 3344444322
Q ss_pred CCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCC-------Cc
Q 004824 178 SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDG-------VD 249 (728)
Q Consensus 178 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g-------~d 249 (728)
..|..||||||||||+|+. .||||+|+|+.+|+++..+ +..+++++||+|+++++ ++
T Consensus 64 -~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~ 128 (279)
T 3f7m_A 64 -ARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRT 128 (279)
T ss_dssp -SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEE
T ss_pred -CCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCe
Confidence 2378899999999999863 6999999999999998776 78889999999999876 89
Q ss_pred EEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc-cccCCCceEEeccccccceeeeEEEcCCCcEE
Q 004824 250 VLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT-LINGAPWLLTVGAGTIDREFEGSLTLGNGVQI 328 (728)
Q Consensus 250 VIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~ap~vitVgast~~~~~~~~~~~~~g~~~ 328 (728)
|||||||. . ....+..++..+.++|++||+||||+|..... .+...|++|+|||.+
T Consensus 129 Vin~S~g~--~----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~----------------- 185 (279)
T 3f7m_A 129 VASMSLGG--G----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATD----------------- 185 (279)
T ss_dssp EEEECCCE--E----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEEC-----------------
T ss_pred EEEeCCCc--C----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecC-----------------
Confidence 99999998 2 45677778889999999999999999976543 367789999999843
Q ss_pred eeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEE
Q 004824 329 NFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAA 408 (728)
Q Consensus 329 ~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~ 408 (728)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 3f7m_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccc
Q 004824 409 FINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQ 488 (728)
Q Consensus 409 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 488 (728)
..+.++.||++||. |||+|||.+|+++++.
T Consensus 186 ----------------------------------~~~~~~~~S~~g~~--------~di~ApG~~i~s~~~~-------- 215 (279)
T 3f7m_A 186 ----------------------------------SNDVRSTFSNYGRV--------VDIFAPGTSITSTWIG-------- 215 (279)
T ss_dssp ----------------------------------TTSBBCTTCCBSTT--------CCEEEECSSEEEECGG--------
T ss_pred ----------------------------------CCCCCCCCCCCCCC--------CeEEECCCCeEeecCC--------
Confidence 22367899999984 4999999999999875
Q ss_pred cCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCC
Q 004824 489 SGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDN 541 (728)
Q Consensus 489 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~ 541 (728)
+.|..++|||||||+|||++|||+|++|. ++++||++|++||++...
T Consensus 216 -----~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~~ 262 (279)
T 3f7m_A 216 -----GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVL 262 (279)
T ss_dssp -----GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESCC
T ss_pred -----CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhcccccc
Confidence 57899999999999999999999999999 999999999999998644
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=409.57 Aligned_cols=285 Identities=21% Similarity=0.212 Sum_probs=212.6
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
+..+|..+++|+||+|||||||||++||+|.+.- + ..+.++|.++. .
T Consensus 43 ~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~------------------~~~~~d~~~~~--------~ 89 (503)
T 2id4_A 43 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------C------------------AEGSWDFNDNT--------N 89 (503)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------C------------------GGGCEETTTTB--------S
T ss_pred hHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------c------------------ccCcccCCCCC--------C
Confidence 3568999999999999999999999999998640 0 01223343321 0
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEEec
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLS 254 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S 254 (728)
......|..||||||||||||...++. | +.||||+|+|+.+|+++.. ++..++++||+|+++++ +|||||
T Consensus 90 ~~~p~~d~~gHGT~vAGiiaa~~~n~~---~-----~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin~S 159 (503)
T 2id4_A 90 LPKPRLSDDYHGTRCAGEIAAKKGNNF---C-----GVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSCS 159 (503)
T ss_dssp CCCCCSTTTTHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEEC
T ss_pred CCCCCCCCCChHHHHHHHHHhccCCCC---C-----cEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEEeC
Confidence 111235788999999999999764332 2 2799999999999998643 67888999999999998 999999
Q ss_pred cccCCCCC---CChhhHHHHHHHHHH-----hCCcEEEEecCCCCCCCC--ccc--cCCCceEEeccccccceeeeEEEc
Q 004824 255 LGLSLNGI---FLEDDAIAVATFAAM-----EKGVLVVASAGNDGPSYW--TLI--NGAPWLLTVGAGTIDREFEGSLTL 322 (728)
Q Consensus 255 lG~~~~~~---~~~~~~~~~~~~~a~-----~~Gi~vV~AAGN~g~~~~--~~~--~~ap~vitVgast~~~~~~~~~~~ 322 (728)
||.. ... ......+..++..+. .+|++||+||||+|.... .++ ..++++|+|||++
T Consensus 160 ~G~~-~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~----------- 227 (503)
T 2id4_A 160 WGPA-DDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID----------- 227 (503)
T ss_dssp EESC-CSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC-----------
T ss_pred CCcC-CCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeC-----------
Confidence 9984 111 112234555555554 489999999999997542 222 2467899999843
Q ss_pred CCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccc
Q 004824 323 GNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIR 402 (728)
Q Consensus 323 ~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 402 (728)
T Consensus 228 -------------------------------------------------------------------------------- 227 (503)
T 2id4_A 228 -------------------------------------------------------------------------------- 227 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEe----CCCceeecc
Q 004824 403 SSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILA----PGSLVLASW 478 (728)
Q Consensus 403 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~A----PG~~I~sa~ 478 (728)
..+.+++||++||.. |++| ||..|+++.
T Consensus 228 ----------------------------------------~~~~~a~~S~~g~~~--------~~~a~~~gpG~~I~st~ 259 (503)
T 2id4_A 228 ----------------------------------------HKDLHPPYSEGCSAV--------MAVTYSSGSGEYIHSSD 259 (503)
T ss_dssp ----------------------------------------TTSCCCTTCCCCTTE--------EEEEECSBTTBCEEEEC
T ss_pred ----------------------------------------CCCCcCCcCCCCCcc--------eEeecCCCCCCceEeec
Confidence 123578999999976 8887 899999985
Q ss_pred CCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCC-CCccccCCCCCCCCC
Q 004824 479 SPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNT-LSHIKDASNNNFPAS 557 (728)
Q Consensus 479 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~-g~~~~d~~~~~~~~~ 557 (728)
... +.|..++|||||||||||++|||+|++|+|++++||++|++||+++... ........ .....
T Consensus 260 ~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~--~g~~~ 325 (503)
T 2id4_A 260 ING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSA--MGKKY 325 (503)
T ss_dssp STT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECS--SSSEE
T ss_pred CCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecC--CCCcc
Confidence 432 6799999999999999999999999999999999999999999987643 11111110 11123
Q ss_pred CCccCCCccCccccCCCCc
Q 004824 558 PLDMGAGHINPNKALDPGL 576 (728)
Q Consensus 558 ~~~~G~G~in~~~Al~~~l 576 (728)
...||+|+||+.+|++...
T Consensus 326 ~~~~G~G~vda~~Av~~a~ 344 (503)
T 2id4_A 326 SHRYGFGKIDAHKLIEMSK 344 (503)
T ss_dssp BTTTBTCBCCHHHHHHHHT
T ss_pred CcccCCcEecHHHHHHHHh
Confidence 4589999999999998443
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=404.01 Aligned_cols=298 Identities=25% Similarity=0.250 Sum_probs=199.5
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
+..+|.++++|+||+|||||||||++||+|.++ ...+.++|..+.+
T Consensus 59 v~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n--------------------------~~~~~~~~~~~~~-------- 104 (600)
T 3hjr_A 59 LWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADN--------------------------VRPGSKNVVTGSD-------- 104 (600)
T ss_dssp CHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGG--------------------------BCSCCBCTTTSSS--------
T ss_pred HHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhc--------------------------cccCcceeecCCC--------
Confidence 345899999999999999999999999999853 0112223332211
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHH-HHHHHCCCcEEE
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAI-DQALQDGVDVLS 252 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai-~~a~~~g~dVIN 252 (728)
+.....|..+|||||||||||.. +..|. .||||+|+|+.+|++++.+ +..++++.|+ +++..++++|||
T Consensus 105 dp~p~~~~~gHGThVAGiIAa~~----n~~g~-----~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n 175 (600)
T 3hjr_A 105 DPTPTDPDTAHGTSVSGIIAAVD----NAIGT-----KGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFN 175 (600)
T ss_dssp CCCCCSTTCCHHHHHHHHHHCCS----SSSSC-----CCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEE
T ss_pred CCCCCCCCCChHHHHHHHHhEeC----CCCCc-----EEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEe
Confidence 11223457899999999999863 22233 7999999999999998766 6677777766 678889999999
Q ss_pred eccccCCCCCC-----ChhhHHHHHHHHH--HhCCcEEEEecCCCCCCCCc----------------------cccCCCc
Q 004824 253 LSLGLSLNGIF-----LEDDAIAVATFAA--MEKGVLVVASAGNDGPSYWT----------------------LINGAPW 303 (728)
Q Consensus 253 ~SlG~~~~~~~-----~~~~~~~~~~~~a--~~~Gi~vV~AAGN~g~~~~~----------------------~~~~ap~ 303 (728)
+|||.. .... .....+..++..+ ..+|+++|+||||.+..... .....++
T Consensus 176 ~S~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~ 254 (600)
T 3hjr_A 176 QSYGMS-VVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLDPSNSNFW 254 (600)
T ss_dssp ECCCCC-CSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTTSSGGGGSSS
T ss_pred cccCcc-ccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCcccccccCccccCc
Confidence 999974 1111 1122222222222 36899999999997643110 0111223
Q ss_pred eEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHc
Q 004824 304 LLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAA 383 (728)
Q Consensus 304 vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~ 383 (728)
+|+|||
T Consensus 255 ~IsVgA-------------------------------------------------------------------------- 260 (600)
T 3hjr_A 255 NLVVSA-------------------------------------------------------------------------- 260 (600)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ceEEee--------------------------------------------------------------------------
Confidence 333333
Q ss_pred CceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCC
Q 004824 384 GVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIP 463 (728)
Q Consensus 384 Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~l 463 (728)
....+.++.||++|+..
T Consensus 261 ---------------------------------------------------------~~~~g~~a~yS~~G~~v------ 277 (600)
T 3hjr_A 261 ---------------------------------------------------------LNADGVRSSYSSVGSNI------ 277 (600)
T ss_dssp ---------------------------------------------------------ECTTSSBCTTCCBCTTC------
T ss_pred ---------------------------------------------------------ecCCCCEeecccCCcce------
Confidence 22345789999999876
Q ss_pred CCcEEeCCCceee--------ccCCCCCc-------------cccccCcccCCceeeccccchhHHHHHHHHHHhhhCCC
Q 004824 464 KPDILAPGSLVLA--------SWSPISSV-------------AEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPD 522 (728)
Q Consensus 464 KPDI~APG~~I~s--------a~~~~~~~-------------~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ 522 (728)
+++|||..+.. ..++.... .........+.|..++|||||||||||++|||+|++|+
T Consensus 278 --~~~apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~ 355 (600)
T 3hjr_A 278 --FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPD 355 (600)
T ss_dssp --CEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTT
T ss_pred --eeccCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCC
Confidence 88899876321 11110000 00001122356889999999999999999999999999
Q ss_pred CCHHHHHHHHHhccccCCCCCCccccC---------------C---CCCCCCCCCccCCCccCccccCCCC
Q 004824 523 WSPAAIRSALVTTASPLDNTLSHIKDA---------------S---NNNFPASPLDMGAGHINPNKALDPG 575 (728)
Q Consensus 523 lsp~~ik~~L~~TA~~~~~~g~~~~d~---------------~---~~~~~~~~~~~G~G~in~~~Al~~~ 575 (728)
|+++|||++|++||++++....|.... . ..........||||+||+.+|++.+
T Consensus 356 lt~~~v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A 426 (600)
T 3hjr_A 356 LSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELA 426 (600)
T ss_dssp SCHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHH
T ss_pred CCHHHHHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHh
Confidence 999999999999999988765542110 0 0011112347999999999998743
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=246.70 Aligned_cols=97 Identities=27% Similarity=0.331 Sum_probs=78.2
Q ss_pred cccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH---CCCcEEEeccccCCCCCC---ChhhHHHHHHHHHHhCCcEEE
Q 004824 211 ARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ---DGVDVLSLSLGLSLNGIF---LEDDAIAVATFAAMEKGVLVV 284 (728)
Q Consensus 211 ~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~---~g~dVIN~SlG~~~~~~~---~~~~~~~~~~~~a~~~Gi~vV 284 (728)
+.||||+|+|+.|++. ...++++++|+||++ ++++|||+|||.. ... .+...+..++.+|..+||+||
T Consensus 274 ~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~--e~~~~~~~~~~~~~~~~~a~~~Gi~vv 347 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGP--EDSWAPASIAAMNRAFLDAAALGVTVL 347 (552)
T ss_dssp HHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEE--GGGSCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCC--cccCCHHHHHHHHHHHHHHHhCCeEEE
Confidence 4899999999999973 356789999999998 7999999999984 221 123466777778889999999
Q ss_pred EecCCCCCCC--------CccccCCCceEEecccccc
Q 004824 285 ASAGNDGPSY--------WTLINGAPWLLTVGAGTID 313 (728)
Q Consensus 285 ~AAGN~g~~~--------~~~~~~ap~vitVgast~~ 313 (728)
+||||+|... ..++..+|||++||+++..
T Consensus 348 ~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~~ 384 (552)
T 1t1e_A 348 AAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLV 384 (552)
T ss_dssp EECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEE
T ss_pred EecCCCCCCCCCCCCcccccCcccCCCEEEEeccccc
Confidence 9999999653 3456788999999997643
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-21 Score=209.90 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=81.0
Q ss_pred ccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH-CCCcEEEeccccCCCC---CCChhhHHHHHHHHHHhCCcEEEEec
Q 004824 212 RGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ-DGVDVLSLSLGLSLNG---IFLEDDAIAVATFAAMEKGVLVVASA 287 (728)
Q Consensus 212 ~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~---~~~~~~~~~~~~~~a~~~Gi~vV~AA 287 (728)
..+||+|+++.|++.+..++..++++.+|+||++ ++++|||||||.. .. ...+...+..++.+|..+||+||+||
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~-e~~~~~~~~~~~~~~~~~~a~~~Gitvv~As 168 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWC-EADANADGTLQAEDRIFATAAAQGQTFSVSS 168 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEE-HHHHHHTTHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCC-CCCCchHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 4579999999999987655778899999999998 8999999999983 10 11233566777778889999999999
Q ss_pred CCCCCCCC-------------ccccCCCceEEecccccc
Q 004824 288 GNDGPSYW-------------TLINGAPWLLTVGAGTID 313 (728)
Q Consensus 288 GN~g~~~~-------------~~~~~ap~vitVgast~~ 313 (728)
||+|...+ ..+..+|||++||+++..
T Consensus 169 Gd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 169 GDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp CSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred CCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 99997532 455678999999997654
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-10 Score=127.03 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=64.0
Q ss_pred ccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH--CCCcEEEeccccCCCC-CCChhhHHHHHHHHHHhCCcEEEEecC
Q 004824 212 RGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ--DGVDVLSLSLGLSLNG-IFLEDDAIAVATFAAMEKGVLVVASAG 288 (728)
Q Consensus 212 ~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~--~g~dVIN~SlG~~~~~-~~~~~~~~~~~~~~a~~~Gi~vV~AAG 288 (728)
.+++++..++.|-.... ....+.++..+++... +-++|||+|||..... ...+...+...+.++..+||.|++|+|
T Consensus 262 ~a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASG 340 (544)
T 3edy_A 262 MSAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASG 340 (544)
T ss_dssp HHHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 45555666555433111 1123345555554442 4589999999994111 112334566667788899999999999
Q ss_pred CCCCCC----------CccccCCCceEEeccccc
Q 004824 289 NDGPSY----------WTLINGAPWLLTVGAGTI 312 (728)
Q Consensus 289 N~g~~~----------~~~~~~ap~vitVgast~ 312 (728)
|+|... ...+..+|||++||+++.
T Consensus 341 D~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 341 DSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp SSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 999753 245678899999999764
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-08 Score=89.71 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=54.9
Q ss_pred CCccccHHHHHHHHhccccccccccccccCCcccEEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEecCCcccc
Q 004824 7 PKAYSSLYTWYLFMLCSVSESSKATATSSTISSKLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAV 81 (728)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ngfs~~l~~~~~~~L~~~p~V~~V~~~~~~~~ 81 (728)
+....+|++|+.+++.+.. .+.+++|+|++.|+||+++|+++++++|+++|+|.+|++++.++.
T Consensus 50 ~~~~~~h~~~l~s~~~~~~-----------~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 50 LSQSERTARRLQAQAARRG-----------YLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------CCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhhcc-----------cCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 3455689999999986521 247899999999999999999999999999999999999987654
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-06 Score=83.16 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=70.0
Q ss_pred cCCCCCccCcc--------CcceEEEEc-cC-CchhHHHHHHHHcCceEEEEecCCC-c---ccccc--ccCccEEEeec
Q 004824 349 DACDSVTELKK--------VINSIVVCR-ED-SSISSQIDNAVAAGVLGAVFISNSA-L---LEVYI--RSSFPAAFINV 412 (728)
Q Consensus 349 ~~c~~~~~~~~--------~~gkiv~~~-g~-~~~~~~~~~~~~~Ga~g~i~~n~~~-~---~~~~~--~~~~p~~~i~~ 412 (728)
..|.+...... .+|||+|++ |. |.|.+|..+++++||.++|++|+.. . ..+.. ...+|+++|+.
T Consensus 84 ~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~Is~ 163 (194)
T 3icu_A 84 NACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGN 163 (194)
T ss_dssp TCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEECH
T ss_pred CCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEECH
Confidence 58987664322 468999999 99 9999999999999999999999852 2 22221 22459999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEeee
Q 004824 413 NDGQTIIDYIKKCDNPTGSLQFRK 436 (728)
Q Consensus 413 ~~g~~l~~~~~~~~~~~~~i~~~~ 436 (728)
.+|+.|++.+.++...+++|.+..
T Consensus 164 ~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 164 LKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEEECCC
Confidence 999999999999888777777654
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-06 Score=72.05 Aligned_cols=47 Identities=26% Similarity=0.268 Sum_probs=43.2
Q ss_pred cccEEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEecCCcccccCCC
Q 004824 38 SSKLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHTTH 85 (728)
Q Consensus 38 ~~~i~~~y~~~~ngfs~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~~~ 85 (728)
+.+++|+|++ |+||+++++++++++|+++|+|.+|+++..++++++.
T Consensus 33 g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 33 GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSAT 79 (80)
T ss_dssp TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEECCC-
T ss_pred CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEeeec
Confidence 4789999998 9999999999999999999999999999999887654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=97.99 E-value=3e-06 Score=76.30 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=40.9
Q ss_pred cccEEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEecCCcccc
Q 004824 38 SSKLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAV 81 (728)
Q Consensus 38 ~~~i~~~y~~~~ngfs~~l~~~~~~~L~~~p~V~~V~~~~~~~~ 81 (728)
+.+++|+|++.||||+++++++++++|+++|+|.+|++++.++.
T Consensus 80 g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 80 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 47899999999999999999999999999999999999987653
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=97.63 E-value=4.9e-05 Score=62.22 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=38.8
Q ss_pred ccEEEEe-cceeeEEEEEeCHHHHHHHhcC--CCeEEEecCCcccc
Q 004824 39 SKLVYTY-ANSIHGFSATLTVSELETLKKL--PGYISSTPDRPLAV 81 (728)
Q Consensus 39 ~~i~~~y-~~~~ngfs~~l~~~~~~~L~~~--p~V~~V~~~~~~~~ 81 (728)
.++.|+| ...|+||+++++++.+++|+++ |.|.+||+++.++.
T Consensus 30 g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 30 GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 5788999 4799999999999999999999 89999999987653
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0015 Score=51.58 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=40.3
Q ss_pred CCcccEEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEecCCccc
Q 004824 36 TISSKLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLA 80 (728)
Q Consensus 36 ~~~~~i~~~y~~~~ngfs~~l~~~~~~~L~~~p~V~~V~~~~~~~ 80 (728)
..|.++.|+|. .+++++++|+++.++.|+++|+|++|+++...+
T Consensus 20 ~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 20 GIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp GGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred HCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 45899999998 799999999999999999999999999997654
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0065 Score=66.55 Aligned_cols=83 Identities=14% Similarity=0.214 Sum_probs=65.7
Q ss_pred CeeeEEEccCCCCCccCc-cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-cc-cc---cccCccEEEeecc
Q 004824 341 SQVSLAFMDACDSVTELK-KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LE-VY---IRSSFPAAFINVN 413 (728)
Q Consensus 341 ~~~~lv~~~~c~~~~~~~-~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~-~~---~~~~~p~~~i~~~ 413 (728)
..-++++...+.+.++.. +++||||+++ |.|.+.+|..+++++||.|+|++++... .. .. ....+|++.++..
T Consensus 93 v~a~lv~~~~G~~~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~ 172 (421)
T 2ek8_A 93 VTAELVYVGLGTTADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQ 172 (421)
T ss_dssp EEEEEEECTTCCTTTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHH
T ss_pred cceEEEECCCCChhhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHH
Confidence 355778876665555555 4999999999 9999999999999999999999998654 11 11 1234599999999
Q ss_pred cHHHHHHHHH
Q 004824 414 DGQTIIDYIK 423 (728)
Q Consensus 414 ~g~~l~~~~~ 423 (728)
+++.|++.+.
T Consensus 173 ~a~~L~~~l~ 182 (421)
T 2ek8_A 173 EGDALAANLR 182 (421)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999884
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0073 Score=69.26 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=63.5
Q ss_pred eeeEEEccCCCCCccCc---cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCcc-c------------------
Q 004824 342 QVSLAFMDACDSVTELK---KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSALL-E------------------ 398 (728)
Q Consensus 342 ~~~lv~~~~c~~~~~~~---~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~------------------ 398 (728)
+.++||...|...++.. +++||||+++ |.|.+.+|..+|+++||.|+|++++.... .
T Consensus 109 ~g~lV~vg~G~~~D~~~l~vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp 188 (640)
T 3kas_A 109 TGKLVHANFGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDP 188 (640)
T ss_dssp EECEEECTTCCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCS
T ss_pred EEEEEEecCCChhhHHHhhcccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCC
Confidence 57888876665555544 4999999999 99999999999999999999999975320 0
Q ss_pred -cc----------------cccCccEEEeecccHHHHHHHHH
Q 004824 399 -VY----------------IRSSFPAAFINVNDGQTIIDYIK 423 (728)
Q Consensus 399 -~~----------------~~~~~p~~~i~~~~g~~l~~~~~ 423 (728)
.+ ....+|++.|+..+++.|++.+.
T Consensus 189 ~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 189 YTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 00 01245999999999999987654
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=95.13 E-value=0.015 Score=67.32 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=44.5
Q ss_pred CeeeEEEccCCCCCccC------c-cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecC
Q 004824 341 SQVSLAFMDACDSVTEL------K-KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISN 393 (728)
Q Consensus 341 ~~~~lv~~~~c~~~~~~------~-~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~ 393 (728)
.+-++||...+...++. . +++|||+|++ |.|.+.+|..+|+++||.|+|++++
T Consensus 127 v~g~lV~v~~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~d 187 (707)
T 3fed_A 127 PEGDLVYVNYARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSD 187 (707)
T ss_dssp CEECEEECTTCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred eEEEEEEecCCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcC
Confidence 46688987666555542 3 3999999999 9999999999999999999999986
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.11 Score=46.14 Aligned_cols=74 Identities=14% Similarity=0.044 Sum_probs=53.2
Q ss_pred eeEEEEEEEEeCCCCCeEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEeCCCCcEEE
Q 004824 636 VVKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVR 715 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~~~v~ 715 (728)
.+.+.+..|+|+|+.+..|+.... .- .+++|...++. +|+++.++|+|.+.. .+.+.+.|.+.-+ +...+.
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~--~~--F~i~P~~g~L~-pg~~~~i~V~F~P~~---~g~~~~~l~v~~~-~g~~~~ 111 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTC--RP--FSIEPAIGTLN-VGESMQLEVEFEPQS---VGDHSGRLIVCYD-TGEKVF 111 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECC--TT--EEEESSEEEEC-TTCEEEEEEEECCSS---SBCCCCBCEEEES-SSCEEC
T ss_pred CeEEEEEEEEECCCCCEEEEEecC--CC--eEEECCcCEEC-CCCEEEEEEEEEcCC---CccEEEEEEEEEC-CCCEEE
Confidence 356666689999998888876653 33 55689999998 899999999999842 3456666666543 335555
Q ss_pred eEE
Q 004824 716 SPI 718 (728)
Q Consensus 716 ~P~ 718 (728)
+++
T Consensus 112 v~L 114 (122)
T 2ys4_A 112 VSL 114 (122)
T ss_dssp CEE
T ss_pred EEE
Confidence 544
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.1 Score=57.36 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=64.4
Q ss_pred CeeeEEEcc---CCCCCccCccCcceEEEEc-cCCc---------hhHH----HHHHHHcCceEEEEecCCCc-c-----
Q 004824 341 SQVSLAFMD---ACDSVTELKKVINSIVVCR-EDSS---------ISSQ----IDNAVAAGVLGAVFISNSAL-L----- 397 (728)
Q Consensus 341 ~~~~lv~~~---~c~~~~~~~~~~gkiv~~~-g~~~---------~~~~----~~~~~~~Ga~g~i~~n~~~~-~----- 397 (728)
-+-++|+.. .|.. ....+++||||+++ +.|. +..| ..++.++||+|+|++|+... .
T Consensus 106 vta~lV~v~~~~~~~~-~~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~t 184 (444)
T 3iib_A 106 LSATIVRFDTLQDLQN-AEAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHT 184 (444)
T ss_dssp EEEEEEEESSHHHHHT-SCTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCC
T ss_pred eEEEEEecCCHHHHhh-ccccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccC
Confidence 466777742 2221 11124999999999 7773 3444 35799999999999997543 1
Q ss_pred -ccc---cccCccEEEeecccHHHHHHHHHhCCCCeEEEEeee
Q 004824 398 -EVY---IRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRK 436 (728)
Q Consensus 398 -~~~---~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 436 (728)
.+. ....+|++.|+..+++.|++.+..+...++++....
T Consensus 185 g~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~~ 227 (444)
T 3iib_A 185 GMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVISLELGS 227 (444)
T ss_dssp CBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred CccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEee
Confidence 111 123459999999999999999987766666665543
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.45 E-value=0.3 Score=59.75 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=22.6
Q ss_pred CCCCCCcEEEEEccCCCCCCCCCC
Q 004824 102 SNYGKGVIIGLVDTGIWPESQSFS 125 (728)
Q Consensus 102 ~~~G~Gv~VgVIDtGid~~Hp~f~ 125 (728)
.+.|+||+|||+|||||+.+|-|.
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 678999999999999999999986
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.47 E-value=4.5 Score=34.58 Aligned_cols=68 Identities=7% Similarity=0.036 Sum_probs=47.6
Q ss_pred eEEEEEEEEeCCCCCeEEEEEEec-CCCeEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEeC
Q 004824 637 VKEFWRTVTNAEEVGTAYTAKLTG-IDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDD 708 (728)
Q Consensus 637 ~~t~~rtvtn~g~~~~ty~~~~~~-~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~ 708 (728)
..+.+.+++|.|+.+..|+..... +.+...+++|..-.+. +|++++++|+|.+.. . +.+.=.|.+.-.
T Consensus 27 ~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~-pg~~~~i~V~f~~~~-~--g~f~~~i~v~~~ 95 (112)
T 2e6j_A 27 AHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIE-PSGVQAIQISFSSII-L--GNFEEEFLVNVN 95 (112)
T ss_dssp CEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEEC-TTBCCEEEEEECCCC-C--EEEEEEECEEES
T ss_pred EEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEEC-CCCEEEEEEEEECCC-c--ceEEEEEEEEEC
Confidence 455566899999999999883211 1223466789998888 899999999999842 2 334445666653
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=80.80 E-value=1 Score=49.15 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=26.1
Q ss_pred cCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCC
Q 004824 442 KPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSP 480 (728)
Q Consensus 442 ~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~ 480 (728)
...+.++.||++||. +||+|||++|+++++.
T Consensus 181 ~~~~~~~~~S~~g~~--------vdv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 181 DSNLDHAAFSQYTDQ--------VEISGPGEAILSTVTV 211 (441)
T ss_dssp CTTCCBCTTSCCCTT--------EEEEEECSSEEEECST
T ss_pred CCCCCCCccccCCCc--------eEEEeccCCeeccccC
Confidence 345678999999974 4999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 728 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 4e-45 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 5e-15 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 3e-07 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 8e-15 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 4e-05 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-13 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-05 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 2e-13 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 6e-04 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 5e-13 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 4e-05 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 2e-12 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 7e-12 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 5e-04 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 9e-12 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 5e-04 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 1e-09 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 1e-07 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 2e-09 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 1e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 5e-04 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 1e-05 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 2e-05 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 3e-04 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 165 bits (417), Expect = 4e-45
Identities = 89/495 (17%), Positives = 161/495 (32%), Gaps = 87/495 (17%)
Query: 90 LGLSSLSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSS 149
+ + I ++D+G +
Sbjct: 8 QTFVGATVLSDSQ--AGNRTICIIDSGYDRSHNDLNA----------------------- 42
Query: 150 LCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATG 209
+ G G P + + HGTH + A G
Sbjct: 43 ---NNVTGTNNSGTG----------NWYQPGNNNAHGTHVAGTIAAI--------ANNEG 81
Query: 210 IARGIAPRACVAMYKAIW---RHGVYSSDVVAAIDQALQDG-VDVLSLSLGLSLNGIFLE 265
+ G+ P ++ YSS +VAAID + G +V+++SLG S +
Sbjct: 82 VV-GVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTER 140
Query: 266 DDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNG 325
+ GVL++A+AGN G S ++ +++V A + + +
Sbjct: 141 NA-----LNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQ 195
Query: 326 VQINFKSLYPGNSSP-SQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAG 384
V+I+ ++ + LA + V+ + +S + NA A G
Sbjct: 196 VEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATG 255
Query: 385 VLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPA 444
L ++ ++ + N+ + +++ + + + K
Sbjct: 256 ALAECTVNGTSF-----------SCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAK 304
Query: 445 PMVDSYSSRGPFLSCPNI--PKPDILAPGSLVLASWSPISSVAEVQSGLLYSN----FNL 498
++ +S P L P + DI P V + QS + + +
Sbjct: 305 GIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEY 364
Query: 499 MSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASP 558
+GTSMATPHV+GVA L+ + HP+ S + +R+AL TA L
Sbjct: 365 YNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSV-------------AGRD 411
Query: 559 LDMGAGHINPNKALD 573
G G IN A
Sbjct: 412 NQTGYGMINAVAAKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 76.2 bits (186), Expect = 5e-15
Identities = 31/132 (23%), Positives = 45/132 (34%), Gaps = 18/132 (13%)
Query: 459 CPNIPKPDILAPGSLVLASWSPISSVA-----EVQSGLLYSNFNLMSGTSMATPHVAGVA 513
+ APG +L++ S+ E ++ GTSMA PHV GV
Sbjct: 332 SSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVV 391
Query: 514 GLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573
+L P+ P IR L TA + D G G + + AL
Sbjct: 392 AVLLQKFPNAKPWQIRKLLENTAFDFNG-------------NGWDHDTGYGLVKLDAALQ 438
Query: 574 PGLVYDATAEDY 585
L E++
Sbjct: 439 GPLPTQGGVEEF 450
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 51.6 bits (122), Expect = 3e-07
Identities = 38/223 (17%), Positives = 58/223 (26%), Gaps = 53/223 (23%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
G +I+ +VDTG+ + +A P + E +G
Sbjct: 146 QLWEEASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDEELPAG-------------- 191
Query: 158 ARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
G GTH + A G+AP
Sbjct: 192 -------------------TDSSYGGSAGTHVAGTIAAKKDGK---------GIVGVAPG 223
Query: 218 ACVAMYKAIWRHG-------VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIA 270
A + V V A I A G V++ S G
Sbjct: 224 AKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSW----GGWGYSYTMKE 279
Query: 271 VATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTID 313
+A V+VV++ N S+ G P ++ V A
Sbjct: 280 AFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYY 322
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 73.1 bits (178), Expect = 8e-15
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 31/127 (24%)
Query: 446 MVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMA 505
VDS S+R F + +++APG+ V +++ + + ++GTSMA
Sbjct: 178 AVDSNSNRASF--SSVGAELEVMAPGAGVYSTYP-------------TNTYATLNGTSMA 222
Query: 506 TPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGH 565
+PHVAG A L+ + HP+ S + +R+ L +TA+ L S G G
Sbjct: 223 SPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG----------------SSFYYGKGL 266
Query: 566 INPNKAL 572
IN A
Sbjct: 267 INVEAAA 273
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 43.8 bits (102), Expect = 4e-05
Identities = 50/236 (21%), Positives = 79/236 (33%), Gaps = 59/236 (25%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
G V + ++DTGI + G G
Sbjct: 16 VQAQGFKGANVKVAVLDTGIQASHPDLNVVG----------------------------G 47
Query: 158 ARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
A F DG+GHGTH + T G+AP
Sbjct: 48 ASFVAGE------------AYNTDGNGHGTHVAGT---------VAALDNTTGVLGVAPS 86
Query: 218 ACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAA 276
+ K + G S +V+ I+ A +G+DV+++S G A+ A A
Sbjct: 87 VSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMS-----LGGASGSTAMKQAVDNA 141
Query: 277 MEKGVLVVASAGNDGPSYWT----LINGAPWLLTVGAGTIDREFEGSLTLGNGVQI 328
+GV+VVA+AGN G S T ++ VGA + ++G +++
Sbjct: 142 YARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEV 197
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 69.5 bits (169), Expect = 1e-13
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 31/128 (24%)
Query: 446 MVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMA 505
VDS + R F S P+ D++APG + ++ + + +GTSMA
Sbjct: 179 AVDSSNQRASFSSVG--PELDVMAPGVSIQSTLPG-------------NKYGAYNGTSMA 223
Query: 506 TPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGH 565
+PHVAG A L+ + HP+W+ +RS+L T + L + G G
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD----------------SFYYGKGL 267
Query: 566 INPNKALD 573
IN A
Sbjct: 268 INVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 44.9 bits (105), Expect = 1e-05
Identities = 39/247 (15%), Positives = 77/247 (31%), Gaps = 55/247 (22%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
G V + ++D+GI
Sbjct: 16 LHSQGYTGSNVKVAVIDSGIDS-------------------------------------- 37
Query: 158 ARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
++P LKV + S + + G +V G+ + G+AP
Sbjct: 38 ----------SHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAALNNSIGVLGVAPS 87
Query: 218 ACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAA 276
A + K + G S ++ I+ A+ + +DV+++SLG L+ + A +
Sbjct: 88 ASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAA-VDKAVASG 146
Query: 277 MEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQ-----INFK 331
+ + S P ++ VGA + ++G + ++ +
Sbjct: 147 VVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQ 206
Query: 332 SLYPGNS 338
S PGN
Sbjct: 207 STLPGNK 213
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 69.9 bits (169), Expect = 2e-13
Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 19/125 (15%)
Query: 443 PAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGT 502
A +I APGS V ++W +N +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG-------------GYNTISGT 249
Query: 503 SMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMG 562
SMATPHV+G+A + A +P S +RS L A +D + ++ G
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDY------ASG 303
Query: 563 AGHIN 567
G
Sbjct: 304 FGFAR 308
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 40.2 bits (92), Expect = 6e-04
Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 7/152 (4%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFS-------DEGMAKVPPRWKGECMSGVQFNSSL 150
++ G G+ I ++DTG+ D A P +G + +
Sbjct: 18 TLTSTTGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCTDRNGHGTHVAG 77
Query: 151 CNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGI 210
G+ +A + L GSG+ ++ + ++
Sbjct: 78 TALADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIIS 137
Query: 211 ARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQ 242
+ + A+ +VAA
Sbjct: 138 MSLGSSANNSLISSAVNYAYSKGVLIVAAAGN 169
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 67.6 bits (164), Expect = 5e-13
Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 44/164 (26%)
Query: 409 FINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDIL 468
+ N G I Y + N V T S+S G DI+
Sbjct: 149 AASGNSGAGSISYPARYANAM-------AVGATDQNNNRASFSQYGA--------GLDIV 193
Query: 469 APGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAI 528
APG V +++ + + ++GTSMATPHVAG A L+K +P WS I
Sbjct: 194 APGVNVQSTYPGSTYAS-------------LNGTSMATPHVAGAAALVKQKNPSWSNVQI 240
Query: 529 RSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKAL 572
R+ L TA+ L S N + G+G +N A
Sbjct: 241 RNHLKNTATSLG---------STNLY-------GSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 43.8 bits (102), Expect = 4e-05
Identities = 54/232 (23%), Positives = 80/232 (34%), Gaps = 56/232 (24%)
Query: 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIG 157
A G GV + ++DTGI + G G
Sbjct: 16 AHNRGLTGSGVKVAVLDTGISTH-PDLNIRG----------------------------G 46
Query: 158 ARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPR 217
A F S +DG+GHGTH + G+ + G+AP
Sbjct: 47 ASFVPGE------------PSTQDGNGHGTHVA---------GTIAALNNSIGVLGVAPS 85
Query: 218 ACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAA 276
A + K + G S + ++ A +G+ V +LSLG LE A +A
Sbjct: 86 AELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ-----AVNSA 140
Query: 277 MEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQI 328
+GVLVVA++GN G + + VGA + G G+ I
Sbjct: 141 TSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDI 192
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.1 bits (162), Expect = 2e-12
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 495 NFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNF 554
+GTS + P AG+ L A+ + + ++ +V T+ P
Sbjct: 252 CTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRK 311
Query: 555 PASPLDMGAGHINPNKALD 573
+ G G ++ +
Sbjct: 312 VSH--SYGYGLLDAGAMVA 328
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.2 bits (157), Expect = 7e-12
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 494 SNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNN 553
N GTS A P AGV LL A+P+ + ++ + +A L+ S
Sbjct: 255 RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMG 314
Query: 554 FPASPLDMGAGHINPNKALD 573
S G G I+ +K ++
Sbjct: 315 KKYSH-RYGFGKIDAHKLIE 333
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.5 bits (93), Expect = 5e-04
Identities = 32/208 (15%), Positives = 59/208 (28%), Gaps = 50/208 (24%)
Query: 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKK 154
+ W + G GV+ +VD G+ E++ D N
Sbjct: 35 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKD-------------------------NFC 69
Query: 155 LIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGI 214
G+ FN + + G+
Sbjct: 70 AEGSWDFN----------------DNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFCGVGV 113
Query: 215 APRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLE-------DD 267
A ++ + + + + D A++ L D D+ S S G + +G L+
Sbjct: 114 GYNAKISGIRILS-GDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKA 171
Query: 268 AIAVATFAAMEKGVLVVASAGNDGPSYW 295
+ T KG + V ++GN G
Sbjct: 172 LVKGVTEGRDSKGAIYVFASGNGGTRGD 199
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 64.5 bits (155), Expect = 9e-12
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 458 SCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLK 517
+ KPD++APG+ +L++ S ++ + + + M GTSMATP VAG L+
Sbjct: 211 TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMATPIVAGNVAQLR 269
Query: 518 AAHPD-----WSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKAL 572
P+ +++AL+ A+ + + G G + +K+L
Sbjct: 270 EHFVKNRGITPKPSLLKAALIAGAADIGL-------------GYPNGNQGWGRVTLDKSL 316
Query: 573 D 573
+
Sbjct: 317 N 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 50/203 (24%)
Query: 98 AWPASNY-GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLI 156
A + G+G I+ + DTG+ S ++G K+
Sbjct: 13 AQSSYGLYGQGQIVAVADTGLDTGRNDSSM------HEAFRG---------------KIT 51
Query: 157 GARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAP 216
+ N+ D +GHGTH + +G+AP
Sbjct: 52 ALYALGRT------------NNANDTNGHGTHVAGS-----------VLGNGSTNKGMAP 88
Query: 217 RACVAMYKAIWRHG---VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVAT 273
+A + + G S++ QA G + + S
Sbjct: 89 QANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNS--WGAAVNGAYTTDSRNVD 146
Query: 274 FAAMEKGVLVVASAGNDGPSYWT 296
+ + ++ +AGN+GP+ T
Sbjct: 147 DYVRKNDMTILFAAGNEGPNGGT 169
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 57.3 bits (137), Expect = 1e-09
Identities = 49/216 (22%), Positives = 74/216 (34%), Gaps = 52/216 (24%)
Query: 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKK 154
AW + G I ++DTG+ + +
Sbjct: 20 TDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDP------------- 66
Query: 155 LIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGI 214
D + HGTH + IAA + G+
Sbjct: 67 -------------------------MDLNNHGTHVAGIAAAETNNATGI--------AGM 93
Query: 215 APRACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVAT 273
AP + +A+ R+G SD+ AI A G +V++LSLG + LE+ A
Sbjct: 94 APNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN-----AV 148
Query: 274 FAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGA 309
A KG +VVA+AGN+G S ++ VGA
Sbjct: 149 NYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGA 184
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 51.5 bits (122), Expect = 1e-07
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 17/75 (22%)
Query: 499 MSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASP 558
MSGTSMA+PHVAG+A LL + IR A+ TA + +
Sbjct: 222 MSGTSMASPHVAGLAALLA--SQGRNNIEIRQAIEQTADKI---------------SGTG 264
Query: 559 LDMGAGHINPNKALD 573
G IN A+
Sbjct: 265 TYFKYGRINSYNAVT 279
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 57.4 bits (137), Expect = 2e-09
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 495 NFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNT 542
+ +SGTSMATPHVAG+A L + +A R + TA+ D +
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLS 262
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 51.6 bits (122), Expect = 1e-07
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 493 YSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNN 552
S + +SGTSMATPHVAGVAGLL + S + IR+A+ TA + T
Sbjct: 215 TSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISGT---------- 262
Query: 553 NFPASPLDMGAGHINPNKALD 573
G +N KA+
Sbjct: 263 -----GTYWAKGRVNAYKAVQ 278
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 40.5 bits (93), Expect = 5e-04
Identities = 40/245 (16%), Positives = 70/245 (28%), Gaps = 53/245 (21%)
Query: 97 GAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLI 156
AW + G G I +VDTG+ + + + + + C
Sbjct: 22 QAWDIAE-GSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTHCA---- 76
Query: 157 GARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAP 216
++ + G AP
Sbjct: 77 ------------------------------------------GIAAAVTNNSTGIAGTAP 94
Query: 217 RACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFA 275
+A + + + G + V I A G V+SLS G + + + A
Sbjct: 95 KASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLS-----LGGTVGNSGLQQAVNY 149
Query: 276 AMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYP 335
A KG +VVA+AGN G + + V + + T G+ V +
Sbjct: 150 AWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSFSTYGSWVDVAAPGSSI 209
Query: 336 GNSSP 340
++ P
Sbjct: 210 YSTYP 214
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 45.9 bits (107), Expect = 1e-05
Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 45/198 (22%)
Query: 99 WPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGA 158
+P G+G I ++ G + S +
Sbjct: 17 FPEGLDGQGQCIAIIALGGGYDETSLAQ-------------------------------- 44
Query: 159 RFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRA 218
F + G+ A G + G + A +AP A
Sbjct: 45 YFASLGVSAPQV-------VSVSVDGATNQPTGDPNGPDGEVELDIEVAG----ALAPGA 93
Query: 219 CVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLE-DDAIAVATFAAM 277
+A+Y A + + + A+ ++S+S G + A+ A A
Sbjct: 94 KIAVYFAPNTDAGFLNAITTAVHDP-THKPSIVSISWGGPEDSWAPASIAAMNRAFLDAA 152
Query: 278 EKGVLVVASAGNDGPSYW 295
GV V+A+AG+ G +
Sbjct: 153 ALGVTVLAAAGDSGSTDG 170
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 45.0 bits (105), Expect = 2e-05
Identities = 47/287 (16%), Positives = 87/287 (30%), Gaps = 21/287 (7%)
Query: 308 GAGTIDREFEGSLTLGNGVQINF-KSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVV 366
G G D + + + G + ++S + + S K + S+
Sbjct: 76 GQGEWDLDSQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGW 135
Query: 367 CRED---SSISSQIDNAVAAGVLGAVFISNSALLEV--------YIRSSFPAAFINVNDG 415
C D D A S S+ E Y S + +
Sbjct: 136 CEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSP 195
Query: 416 QTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVL 475
I + +TV +++ G + + P + G+
Sbjct: 196 NVIAVGGTTLYTTSAGAYSNETVWNEGLDSNGKLWATGGGYSVYESKPSWQSVVSGTPGR 255
Query: 476 ASWSPISSVAEVQSGLLYSN---FNLMSGTSMATPHVAGVAGLLKAAHPD---WSPAAIR 529
IS A +G L N + GTS+A+P G+ L++A+ + + A+
Sbjct: 256 RLLPDISFDAAQGTGALIYNYGQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFY 315
Query: 530 SALVTTASPLDNTLSHIKDASNNNFPASP---LDMGAGHINPNKALD 573
SA+ +T S + + S + A G G ++ K
Sbjct: 316 SAISSTPSLVHDVKSGNNGYGGYGYNAGTGWDYPTGWGSLDIAKLSA 362
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 27/216 (12%), Positives = 56/216 (25%), Gaps = 49/216 (22%)
Query: 92 LSSLSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLC 151
++ A A +G++ G ++
Sbjct: 12 FPTIYDASSAPT-AANTTVGIITIGGVSQTLQ---------------------------- 42
Query: 152 NKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIA 211
+ GL + N + + + + +
Sbjct: 43 ---DLQQFTSANGLASVNT---QTIQTGSSNGDYSDDQQGQGEWDLD---------SQSI 87
Query: 212 RGIAPRACVAMYKAIWRHGV-YSSDVVAAIDQALQD-GVDVLSLSLGLSLNGIFLED--D 267
G A A + + ++ + A +QA+ D V+++SLG +
Sbjct: 88 VGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQ 147
Query: 268 AIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPW 303
A A +G S+G++G Y G P
Sbjct: 148 AEDRIFATAAAQGQTFSVSSGDEG-VYECNNRGYPD 182
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 728 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.95 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 97.81 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 97.26 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.18 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.18 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 95.86 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=3.7e-50 Score=466.93 Aligned_cols=342 Identities=25% Similarity=0.249 Sum_probs=248.8
Q ss_pred cccEEEEecceeeEEEEEeCHHHH----HH--HhcCCCeEEEecCCcccccCC----CCcc-------------------
Q 004824 38 SSKLVYTYANSIHGFSATLTVSEL----ET--LKKLPGYISSTPDRPLAVHTT----HTSE------------------- 88 (728)
Q Consensus 38 ~~~i~~~y~~~~ngfs~~l~~~~~----~~--L~~~p~V~~V~~~~~~~~~~~----~s~~------------------- 88 (728)
+.++++++. .++.+.++++...+ +. +..+|+|++|+|+...++... ..+.
T Consensus 52 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (671)
T d1r6va_ 52 NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE 130 (671)
T ss_dssp TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCcc
Confidence 356777776 46777787764322 22 235899999999865443210 0000
Q ss_pred ----ccCCCC--CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeecc
Q 004824 89 ----FLGLSS--LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFN 162 (728)
Q Consensus 89 ----~~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~ 162 (728)
.|+++. +..+|.+..+|+||+|||||||||++||+|.++ ++..+++.
T Consensus 131 ~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~~---------------------------~~~~~~~~ 183 (671)
T d1r6va_ 131 LSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQ---------------------------VIAGYRPA 183 (671)
T ss_dssp TGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSGGGTTT---------------------------BCCEEEGG
T ss_pred ccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCChhhcCC---------------------------cccCcccc
Confidence 112211 122333456899999999999999999999864 22222222
Q ss_pred ccccccCCCCccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeC------CC-CChHH
Q 004824 163 KGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWR------HG-VYSSD 235 (728)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~------~g-~~~~~ 235 (728)
.+.+. ....++.|..||||||||||||+..+ .| +.||||+|+|+++|++++ .+ .....
T Consensus 184 ~~~~~------~~~~~~~d~~gHGT~VAGiiaa~~~~----~g-----~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~ 248 (671)
T d1r6va_ 184 FDEEL------PAGTDSSYGGSAGTHVAGTIAAKKDG----KG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDY 248 (671)
T ss_dssp GTEEE------CTTCBCCTTCSHHHHHHHHHHCCCSS----SS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHH
T ss_pred ccCCC------CCCCcCcccCCCCccccceeeeeccc----cc-----eeeecCcceEEEEEecccccccCCCCcccHHH
Confidence 21110 01134567889999999999997532 12 379999999999999974 23 56778
Q ss_pred HHHHHHHHHHCCCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccc
Q 004824 236 VVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY-WTLINGAPWLLTVGAGTIDR 314 (728)
Q Consensus 236 i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~ap~vitVgast~~~ 314 (728)
+++||+||+++|++|||||||+. .....+..++..+.++|+++|+||||++... ...+...|++|+|||.+.+.
T Consensus 249 i~~ai~~a~~~g~~Vin~S~g~~-----~~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~ 323 (671)
T d1r6va_ 249 VAAGIIWATDHGAKVMNHSWGGW-----GYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG 323 (671)
T ss_dssp HHHHHHHHHHTTCSEEEECEEBS-----CCCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET
T ss_pred HHHHHHHHHhCCCcEEecccccc-----cCChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC
Confidence 99999999999999999999983 2345566777889999999999999998754 46677889999999854211
Q ss_pred eeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCC
Q 004824 315 EFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNS 394 (728)
Q Consensus 315 ~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 394 (728)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCce
Q 004824 395 ALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLV 474 (728)
Q Consensus 395 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 474 (728)
....+++||+|||.. ||+|||++|
T Consensus 324 ------------------------------------------------~~~~~a~fS~~g~~~--------dv~APG~~i 347 (671)
T d1r6va_ 324 ------------------------------------------------GTFRVAGFSSRSDGV--------SVGAPGVTI 347 (671)
T ss_dssp ------------------------------------------------TEEEECSSSCCCTTE--------EEEEECSSE
T ss_pred ------------------------------------------------CcceeeeccCCCCCc--------eEEecCCCe
Confidence 111568999999864 999999999
Q ss_pred eeccCCCCCccc-----cccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccC
Q 004824 475 LASWSPISSVAE-----VQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDA 549 (728)
Q Consensus 475 ~sa~~~~~~~~~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~ 549 (728)
+++++....... .......+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++...+
T Consensus 348 ~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g------ 421 (671)
T d1r6va_ 348 LSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG------ 421 (671)
T ss_dssp EEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS------
T ss_pred EeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC------
Confidence 999875332111 111123468999999999999999999999999999999999999999999875432
Q ss_pred CCCCCCCCCCccCCCccCccccCCCCc
Q 004824 550 SNNNFPASPLDMGAGHINPNKALDPGL 576 (728)
Q Consensus 550 ~~~~~~~~~~~~G~G~in~~~Al~~~l 576 (728)
.+..||||+||+.+||+..+
T Consensus 422 -------~~~~~G~G~vna~~Av~~~~ 441 (671)
T d1r6va_ 422 -------WDHDTGYGLVKLDAALQGPL 441 (671)
T ss_dssp -------CBTTTBTCBCCHHHHHHCCC
T ss_pred -------CCCCcccChhCHHHHhhCcC
Confidence 34589999999999998544
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=5.4e-49 Score=437.08 Aligned_cols=362 Identities=25% Similarity=0.274 Sum_probs=236.0
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccC
Q 004824 96 SGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVR 175 (728)
Q Consensus 96 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 175 (728)
+.+|. .+|+||+|||||||||++||+|.++ ++..+++... .+
T Consensus 14 ~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~---------------------------~~~~~~~~~~---------~~ 55 (435)
T d1v6ca_ 14 TVLSD--SQAGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT---------GN 55 (435)
T ss_dssp GGSCC--TTGGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS---------CC
T ss_pred chhhh--cCCCCcEEEEEcCCCCCCChhhccC---------------------------eeeeeccCCC---------CC
Confidence 44555 4799999999999999999999754 2233333221 11
Q ss_pred CCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccC--CCeEEEEEeeeCCC-CChHHHHHHHHHHHH-CCCcEE
Q 004824 176 MNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAP--RACVAMYKAIWRHG-VYSSDVVAAIDQALQ-DGVDVL 251 (728)
Q Consensus 176 ~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP--~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~-~g~dVI 251 (728)
...+.|++||||||||||||+..+ .| +.|||| +++|+.+|++.... +...++++||+++++ .|++||
T Consensus 56 ~~~~~d~~gHGThvAgiiag~~~~----~g-----~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vi 126 (435)
T d1v6ca_ 56 WYQPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVV 126 (435)
T ss_dssp TTCCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEE
T ss_pred CCCCCCCCCcHHHHHHHHhccCCC----Cc-----eEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEE
Confidence 235678899999999999998532 23 389999 89999999998765 677789999999996 599999
Q ss_pred EeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEE--e
Q 004824 252 SLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQI--N 329 (728)
Q Consensus 252 N~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~--~ 329 (728)
|+|||.. . ....+..++..+.++|+++|+||||+|....++++.++++|+||+++.+......-..+....+ .
T Consensus 127 n~S~g~~--~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~ap 201 (435)
T d1v6ca_ 127 TMSLGGS--G---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGP 201 (435)
T ss_dssp EECCCBS--C---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEE
T ss_pred ecccCCC--C---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeec
Confidence 9999993 2 2344556777888999999999999999988889999999999998765432111000100000 0
Q ss_pred eeecC---C-CC------------CC---CCeeeEEEccCCCC--------------------CccCcc-CcceEEEEc-
Q 004824 330 FKSLY---P-GN------------SS---PSQVSLAFMDACDS--------------------VTELKK-VINSIVVCR- 368 (728)
Q Consensus 330 g~s~~---~-~~------------~~---~~~~~lv~~~~c~~--------------------~~~~~~-~~gkiv~~~- 368 (728)
|..++ . +. .. ......+....|.. ..+... +.+++.++.
T Consensus 202 G~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (435)
T d1v6ca_ 202 GEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVER 281 (435)
T ss_dssp CSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEEC
T ss_pred ccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeec
Confidence 00000 0 00 00 00000000011100 001111 444555554
Q ss_pred c-C----CchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccC
Q 004824 369 E-D----SSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKP 443 (728)
Q Consensus 369 g-~----~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 443 (728)
. . .....+...+...++.+++.+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 311 (435)
T d1v6ca_ 282 VGNQGSSYPEINSTKACKTAGAKGIIVYSN-------------------------------------------------- 311 (435)
T ss_dssp CSCSSSSCTHHHHHHHHHHTTCSEEEEECC--------------------------------------------------
T ss_pred cCCccccceeeeeceeecccCCcceEEecc--------------------------------------------------
Confidence 1 1 12344445555555555544432
Q ss_pred CCccccccCCCCCCCC--CCCCCCcEEeCCCceeeccCCCC----CccccccCcccCCceeeccccchhHHHHHHHHHHh
Q 004824 444 APMVDSYSSRGPFLSC--PNIPKPDILAPGSLVLASWSPIS----SVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLK 517 (728)
Q Consensus 444 ~~~~a~fSS~GP~~~~--~~~lKPDI~APG~~I~sa~~~~~----~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 517 (728)
+.+|.... ....||||.+||..|.++..... .............|..++|||||||||||++|||+
T Consensus 312 --------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~ 383 (435)
T d1v6ca_ 312 --------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVW 383 (435)
T ss_dssp --------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHH
T ss_pred --------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHH
Confidence 22222211 12278999999998876532110 00001111223679999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCCCCceecCChhhHHHHHHh
Q 004824 518 AAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALDPGLVYDATAEDYIKLLCA 591 (728)
Q Consensus 518 ~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~~~lv~~~~~~dy~~~lc~ 591 (728)
|+||+|+++|||++||+||+++.. ++.+++||+|+||+.+|++ ||...|.
T Consensus 384 q~~P~~s~~~vk~~L~~TA~~~~~-------------~~~~~~~G~G~vn~~~A~~-----------~l~~~~~ 433 (435)
T d1v6ca_ 384 SYHPECSASQVRAALNATADDLSV-------------AGRDNQTGYGMINAVAAKA-----------YLDESCT 433 (435)
T ss_dssp HHCTTSCHHHHHHHHHHHSBCCSS-------------SSCBTTTBTCBCCHHHHHH-----------HHHHCTT
T ss_pred HHCCCCCHHHHHHHHHhhCcccCC-------------CCCCCCcccceecHHHHHH-----------HHHhcCC
Confidence 999999999999999999987742 3456799999999999964 8887775
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=3.3e-48 Score=405.14 Aligned_cols=259 Identities=31% Similarity=0.417 Sum_probs=209.1
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
++.+|+++++|+||+|||||||||++||+|.++ ++..++|...
T Consensus 20 ~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~---------------------------~~~~~~~~~~---------- 62 (280)
T d1dbia_ 20 TDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDN---------- 62 (280)
T ss_dssp HHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTT----------
T ss_pred HHHHHhccCCCCCeEEEEEccCcCCCChhhcCC---------------------------eeecccccCC----------
Confidence 367999999999999999999999999999753 4444554432
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 253 (728)
...+.|..+|||||||+|+|...+. +.+.||||+|+|+.+|+++..+ +...++++||+|++++|++|||+
T Consensus 63 -~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~ 133 (280)
T d1dbia_ 63 -DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINL 133 (280)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred -CCccccccccccceeEeeeccccCC--------CceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeec
Confidence 1346688999999999999975432 2248999999999999998766 78899999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeec
Q 004824 254 SLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSL 333 (728)
Q Consensus 254 SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~ 333 (728)
|||.. . ..+....+...+.++|+++|+||||+|......+...+++|+||+.+
T Consensus 134 S~g~~--~---~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~---------------------- 186 (280)
T d1dbia_ 134 SLGCD--C---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD---------------------- 186 (280)
T ss_dssp CCSSC--C---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC----------------------
T ss_pred ccccc--c---cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeec----------------------
Confidence 99983 2 23344556668889999999999999988777888899999999842
Q ss_pred CCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecc
Q 004824 334 YPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVN 413 (728)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~ 413 (728)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T d1dbia_ 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCccc
Q 004824 414 DGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLY 493 (728)
Q Consensus 414 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 493 (728)
..+.++.||++||.. |++|||.+|++....
T Consensus 187 -----------------------------~~~~~a~~S~~g~~~--------d~~apg~~i~~~~~~------------- 216 (280)
T d1dbia_ 187 -----------------------------QYDRLASFSNYGTWV--------DVVAPGVDIVSTITG------------- 216 (280)
T ss_dssp -----------------------------TTSCBCTTBCCSTTC--------CEEEECSSEEEEETT-------------
T ss_pred -----------------------------CCCCcCCcCCCCCcc--------cccCCccceeccccC-------------
Confidence 233678999999854 999999999998875
Q ss_pred CCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 494 SNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 494 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
..|..++|||||||+|||++|||++. .+++.+||++|++||+++.. ....||+|+||+.+||+
T Consensus 217 ~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~---------------~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 217 NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG---------------TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT---------------BTTTBSSEECCHHHHHT
T ss_pred cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC---------------CCCcCCCCeEcHHHHcC
Confidence 58999999999999999999999995 55899999999999987642 23379999999999985
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=2.9e-47 Score=398.00 Aligned_cols=258 Identities=33% Similarity=0.480 Sum_probs=217.5
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
++.+|+.+ +|+||+|+|||||||++||+|.++ ++..++|.++.
T Consensus 20 a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~---------------------------~~~~~~~~~~~--------- 62 (279)
T d1thma_ 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK---------------------------VVGGWDFVDND--------- 62 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEETTTTB---------
T ss_pred HHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC---------------------------eeccccccccC---------
Confidence 46789887 899999999999999999999754 45555555431
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 253 (728)
..+.|..+||||||++|++...++. .+.|+||+|+|+.+|++...+ +...+++++|+++++.+++|+|+
T Consensus 63 --~~~~d~~~HGT~vag~i~~~~~~~~--------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~ 132 (279)
T d1thma_ 63 --STPQNGNGHGTHCAGIAAAVTNNST--------GIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISL 132 (279)
T ss_dssp --SCCCCSSSHHHHHHHHHHCCCSSSS--------SCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred --cccccccccccccceeeeeccCCCc--------cccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceecc
Confidence 3466788999999999999864332 238999999999999998776 78889999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeec
Q 004824 254 SLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSL 333 (728)
Q Consensus 254 SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~ 333 (728)
|||.. ........+...+.++|+++|+|+||+|......+...|++++|||++
T Consensus 133 S~G~~-----~~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~---------------------- 185 (279)
T d1thma_ 133 SLGGT-----VGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD---------------------- 185 (279)
T ss_dssp CCCBS-----SCCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC----------------------
T ss_pred ccCcc-----ccchhHHHHHHHHHhcCceEEEeccccccCCCcccccccccccccccc----------------------
Confidence 99993 233445566678889999999999999998888888899999999843
Q ss_pred CCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecc
Q 004824 334 YPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVN 413 (728)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~ 413 (728)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d1thma_ 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCccc
Q 004824 414 DGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLY 493 (728)
Q Consensus 414 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 493 (728)
..+.++.||++|+.. ||+|||.+|+++.+.
T Consensus 186 -----------------------------~~~~~~~~S~~G~~~--------di~Apg~~i~~~~~~------------- 215 (279)
T d1thma_ 186 -----------------------------QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT------------- 215 (279)
T ss_dssp -----------------------------TTSCBCTTCCCCTTC--------CEEEECSSEEEEETT-------------
T ss_pred -----------------------------CCCCCccccCCCceE--------EEeeeeeccccccCc-------------
Confidence 223679999999865 999999999999886
Q ss_pred CCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 494 SNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 494 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
+.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++.. .+..||+|+||+.+||+
T Consensus 216 ~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g---------------~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 216 STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG---------------TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT---------------BTTTBSSEECCHHHHHH
T ss_pred ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC---------------CCCcceeeeEcHHHhhC
Confidence 5799999999999999999999999765 799999999999987642 23479999999999975
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=4e-47 Score=395.81 Aligned_cols=257 Identities=32% Similarity=0.464 Sum_probs=212.3
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
+..+|.++++|+||+|||||||||++||+|. +...++|..+.
T Consensus 13 ~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-----------------------------~~~~~~~~~~~--------- 54 (274)
T d1r0re_ 13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAGE--------- 54 (274)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTTC---------
T ss_pred hHHHHHcCCCCCCeEEEEECCCCCCCChhhc-----------------------------ccCCccccCCC---------
Confidence 3668999999999999999999999999995 23334444321
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 253 (728)
..+.|..+|||||||||++..... | ..|+||+|+|+.+|+++..+ ...+++++||+++.+++++|+|+
T Consensus 55 --~~~~d~~gHGT~vAgii~~~~~~~----~-----~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~ 123 (274)
T d1r0re_ 55 --AYNTDGNGHGTHVAGTVAALDNTT----G-----VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINM 123 (274)
T ss_dssp --CTTCCSSSHHHHHHHHHHCCSSSS----B-----CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEE
T ss_pred --CCCCCccccccccccccccccccc----c-----ccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceecc
Confidence 235578899999999999875322 2 37999999999999998876 67889999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC----ccccCCCceEEeccccccceeeeEEEcCCCcEEe
Q 004824 254 SLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW----TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQIN 329 (728)
Q Consensus 254 SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~ 329 (728)
|||.. . ..........++.++++++|+||||+|.... ..+...+++|+|||.+
T Consensus 124 S~~~~--~---~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~------------------ 180 (274)
T d1r0re_ 124 SLGGA--S---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVD------------------ 180 (274)
T ss_dssp CEEBS--S---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEEC------------------
T ss_pred ccccc--c---chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeEC------------------
Confidence 99983 2 2233444556788999999999999986532 3456678999999843
Q ss_pred eeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEE
Q 004824 330 FKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAF 409 (728)
Q Consensus 330 g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~ 409 (728)
T Consensus 181 -------------------------------------------------------------------------------- 180 (274)
T d1r0re_ 181 -------------------------------------------------------------------------------- 180 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcccccc
Q 004824 410 INVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQS 489 (728)
Q Consensus 410 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 489 (728)
..+.+++||++|| ||||+|||.+|+++.+.
T Consensus 181 ---------------------------------~~~~~~~~s~~g~--------~~di~APG~~i~~~~~~--------- 210 (274)
T d1r0re_ 181 ---------------------------------SNSNRASFSSVGA--------ELEVMAPGAGVYSTYPT--------- 210 (274)
T ss_dssp ---------------------------------TTSCBCTTCCCST--------TEEEEEECSSEEEEETT---------
T ss_pred ---------------------------------CCCCcccccCCCC--------CEEEEecCCCcccccCC---------
Confidence 2236789999996 56999999999999875
Q ss_pred CcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCcc
Q 004824 490 GLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPN 569 (728)
Q Consensus 490 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~ 569 (728)
+.|..++|||||||+|||++|||+|++|+|++.+||++|++||+++. +...||+|+||+.
T Consensus 211 ----~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~----------------~~~~~G~G~ln~~ 270 (274)
T d1r0re_ 211 ----NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG----------------SSFYYGKGLINVE 270 (274)
T ss_dssp ----TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS----------------CHHHHTTCBCCHH
T ss_pred ----CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC----------------CCCceEcCeecHH
Confidence 57899999999999999999999999999999999999999998763 2348999999999
Q ss_pred ccCC
Q 004824 570 KALD 573 (728)
Q Consensus 570 ~Al~ 573 (728)
+|++
T Consensus 271 ~A~~ 274 (274)
T d1r0re_ 271 AAAQ 274 (274)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 9986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=8e-47 Score=395.03 Aligned_cols=260 Identities=30% Similarity=0.433 Sum_probs=213.8
Q ss_pred CCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCc
Q 004824 94 SLSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLK 173 (728)
Q Consensus 94 ~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~ 173 (728)
+++.+|.++++|+||+|||||||||++||+|... ..+++....
T Consensus 12 ~a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~-----------------------------~~~~~~~~~-------- 54 (281)
T d1to2e_ 12 KAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA-----------------------------GGASMVPSE-------- 54 (281)
T ss_dssp THHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-----------------------------EEEECCTTC--------
T ss_pred CcHHHHHCCCCCCCeEEEEECCCCCCCChhhhhc-----------------------------CCccccCCC--------
Confidence 3467999999999999999999999999999632 223332211
Q ss_pred cCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEE
Q 004824 174 VRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLS 252 (728)
Q Consensus 174 ~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN 252 (728)
.....+..+|||||||||+|..... ...|+||+|+|+.+|++...+ ....++++||+|+++.+++|+|
T Consensus 55 --~~~~~~~~~HGT~vAgiiag~~~~~---------~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n 123 (281)
T d1to2e_ 55 --TNPFQDNNSHGTHVAGTVAALNNSI---------GVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVIN 123 (281)
T ss_dssp --CCTTCCSSSHHHHHHHHHHCCSSSS---------SBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEE
T ss_pred --CCCCcCcCCCCceeecccccCCCCC---------CcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccc
Confidence 1123346789999999999974321 137999999999999998776 6788899999999999999999
Q ss_pred eccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC----CccccCCCceEEeccccccceeeeEEEcCCCcEE
Q 004824 253 LSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY----WTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQI 328 (728)
Q Consensus 253 ~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~ 328 (728)
+|||.. .....+..++..+.++|+++|+||||+|... ...+...+++|+||+.+
T Consensus 124 ~S~g~~-----~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~----------------- 181 (281)
T d1to2e_ 124 MSLGGP-----SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD----------------- 181 (281)
T ss_dssp ECEEBS-----CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEEC-----------------
T ss_pred cccCCC-----cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeec-----------------
Confidence 999983 3445666777888999999999999998753 23456778999999843
Q ss_pred eeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEE
Q 004824 329 NFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAA 408 (728)
Q Consensus 329 ~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~ 408 (728)
T Consensus 182 -------------------------------------------------------------------------------- 181 (281)
T d1to2e_ 182 -------------------------------------------------------------------------------- 181 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccc
Q 004824 409 FINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQ 488 (728)
Q Consensus 409 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 488 (728)
..+.++.||++||.. |++|||.+|+++.+.
T Consensus 182 ----------------------------------~~~~~~~~S~~G~~~--------d~~apG~~i~s~~~~-------- 211 (281)
T d1to2e_ 182 ----------------------------------SSNQRASFSSVGPEL--------DVMAPGVSIQSTLPG-------- 211 (281)
T ss_dssp ----------------------------------TTSCBCTTCCCSTTC--------CEEEECSSEEEEETT--------
T ss_pred ----------------------------------CCCCCCcccCCCCCc--------cccCCCCCceeecCC--------
Confidence 123678999999865 999999999998875
Q ss_pred cCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCc
Q 004824 489 SGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINP 568 (728)
Q Consensus 489 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~ 568 (728)
+.|..++|||||||+|||++|||+|++|.|++++||++|++||+++.. +..||+|+||+
T Consensus 212 -----~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~----------------~~~~G~G~ld~ 270 (281)
T d1to2e_ 212 -----NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD----------------SFYYGKGLINV 270 (281)
T ss_dssp -----TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC----------------HHHHTTCBCCH
T ss_pred -----CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC----------------CCCcccCcccH
Confidence 578999999999999999999999999999999999999999987632 23789999999
Q ss_pred cccCCC
Q 004824 569 NKALDP 574 (728)
Q Consensus 569 ~~Al~~ 574 (728)
.+|++.
T Consensus 271 ~~A~~~ 276 (281)
T d1to2e_ 271 QAAAQH 276 (281)
T ss_dssp HHHTSS
T ss_pred HHHHhh
Confidence 999983
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=2e-46 Score=389.43 Aligned_cols=257 Identities=33% Similarity=0.447 Sum_probs=214.3
Q ss_pred CCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCc
Q 004824 94 SLSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLK 173 (728)
Q Consensus 94 ~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~ 173 (728)
++..+|..+++|+||+||||||||+ +||+|... ..++|..+
T Consensus 12 ~~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~-----------------------------~~~~~~~~--------- 52 (269)
T d1gcia_ 12 QAPAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR-----------------------------GGASFVPG--------- 52 (269)
T ss_dssp THHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE-----------------------------EEEECSTT---------
T ss_pred CcHHHHhCCCCCCCeEEEEECCCCC-CCcccCcc-----------------------------ccccccCC---------
Confidence 3467999999999999999999998 89998532 22333322
Q ss_pred cCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEE
Q 004824 174 VRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLS 252 (728)
Q Consensus 174 ~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN 252 (728)
...+.|..+|||||||+|++.... +...|+||+|+|+.+|++...+ .....+.++|+++...++++||
T Consensus 53 --~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in 121 (269)
T d1gcia_ 53 --EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVAN 121 (269)
T ss_dssp --CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEE
T ss_pred --CCCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhccccccc
Confidence 124567889999999999987532 2237999999999999998776 6777889999999999999999
Q ss_pred eccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeee
Q 004824 253 LSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKS 332 (728)
Q Consensus 253 ~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s 332 (728)
+|||.. ........+...+.++|+++|+||||+|.....++...|++|+||+.+
T Consensus 122 ~s~g~~-----~~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~--------------------- 175 (269)
T d1gcia_ 122 LSLGSP-----SPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATD--------------------- 175 (269)
T ss_dssp ECCCBS-----SCCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC---------------------
T ss_pred cccccc-----cccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEc---------------------
Confidence 999983 223334456678899999999999999988888888899999999843
Q ss_pred cCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeec
Q 004824 333 LYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINV 412 (728)
Q Consensus 333 ~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~ 412 (728)
T Consensus 176 -------------------------------------------------------------------------------- 175 (269)
T d1gcia_ 176 -------------------------------------------------------------------------------- 175 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcc
Q 004824 413 NDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLL 492 (728)
Q Consensus 413 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 492 (728)
..+.++.||++||.. ||+|||.++.+..+.
T Consensus 176 ------------------------------~~~~~~~~S~~G~~~--------di~Apg~~~~~~~~~------------ 205 (269)
T d1gcia_ 176 ------------------------------QNNNRASFSQYGAGL--------DIVAPGVNVQSTYPG------------ 205 (269)
T ss_dssp ------------------------------TTSCBCTTCCCSTTE--------EEEEECSSEEEEETT------------
T ss_pred ------------------------------cCCCcccccCCCCCc--------eEEEeeecceeccCC------------
Confidence 123678999999864 999999999998875
Q ss_pred cCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccC
Q 004824 493 YSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKAL 572 (728)
Q Consensus 493 ~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al 572 (728)
..|..++|||||||+|||++|||+|++|+|++++||++|++||+++.. +..||+|+||+++|+
T Consensus 206 -~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~----------------~~~~G~G~ln~~~Av 268 (269)
T d1gcia_ 206 -STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS----------------TNLYGSGLVNAEAAT 268 (269)
T ss_dssp -TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC----------------HHHHTTCBCCHHHHT
T ss_pred -CceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC----------------CCCcccCeEcHHHhc
Confidence 589999999999999999999999999999999999999999987632 237899999999998
Q ss_pred C
Q 004824 573 D 573 (728)
Q Consensus 573 ~ 573 (728)
+
T Consensus 269 k 269 (269)
T d1gcia_ 269 R 269 (269)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=2.1e-42 Score=365.90 Aligned_cols=288 Identities=30% Similarity=0.354 Sum_probs=216.1
Q ss_pred CCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCc
Q 004824 94 SLSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLK 173 (728)
Q Consensus 94 ~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~ 173 (728)
+++.+|..+++|+||+|+|||||||++||+|.++ +...++|.....
T Consensus 14 ~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~---------------------------~~~~~~~~~~~~------- 59 (309)
T d2ixta1 14 YNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT------- 59 (309)
T ss_dssp HTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS-------
T ss_pred CChhhhccCCCCCCeEEEEEccCCCCCChhHhcc---------------------------ccccccccCCCC-------
Confidence 3577999999999999999999999999999854 344444443211
Q ss_pred cCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCC-----
Q 004824 174 VRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDG----- 247 (728)
Q Consensus 174 ~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g----- 247 (728)
.......|..+|||||||||+|....+. ..+.||||+|+|+.+|++...+ +..++++.+++++++.+
T Consensus 60 ~~~~~~~d~~gHGT~VAgiiaa~~~~~~-------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 132 (309)
T d2ixta1 60 PINNSCTDRNGHGTHVAGTALADGGSDQ-------AGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGT 132 (309)
T ss_dssp CEETCCCCSSSHHHHHHHHHHCBCCTTS-------CSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCccccccccccccccccccccccc-------hhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccc
Confidence 1123456788999999999999754321 2238999999999999998766 77888999999988653
Q ss_pred CcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc--cccCCCceEEeccccccceeeeEEEcCCC
Q 004824 248 VDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT--LINGAPWLLTVGAGTIDREFEGSLTLGNG 325 (728)
Q Consensus 248 ~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~ap~vitVgast~~~~~~~~~~~~~g 325 (728)
..|+|+|++.. ........++..+.++|+++|+||||++..... .+...+++++|++.+........
T Consensus 133 ~~v~~~s~~~~-----~~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~------ 201 (309)
T d2ixta1 133 KTIISMSLGSS-----ANNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY------ 201 (309)
T ss_dssp CEEEEECCCBS-----SCCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEE------
T ss_pred ccccccccccc-----ccccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccc------
Confidence 46999999983 233444556668889999999999999876543 34456888888874322110000
Q ss_pred cEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCc
Q 004824 326 VQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSF 405 (728)
Q Consensus 326 ~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 405 (728)
T Consensus 202 -------------------------------------------------------------------------------- 201 (309)
T d2ixta1 202 -------------------------------------------------------------------------------- 201 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcc
Q 004824 406 PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVA 485 (728)
Q Consensus 406 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 485 (728)
..........++++|+..... .||||+|||.+++++...
T Consensus 202 ----------------------------------~~~~~~~~~~~~~~~~~~~~~--~~vdi~apG~~~~s~~~~----- 240 (309)
T d2ixta1 202 ----------------------------------RVADYSSRGYISTAGDYVIQE--GDIEISAPGSSVYSTWYN----- 240 (309)
T ss_dssp ----------------------------------EECTTSCCCCTTTTTSSSCCT--TCCCEEEECSSEEEECTT-----
T ss_pred ----------------------------------cccccccccccccccccccCC--CcceeecCCCceeeecCC-----
Confidence 001112345567777766544 799999999999999875
Q ss_pred ccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCc
Q 004824 486 EVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGH 565 (728)
Q Consensus 486 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~ 565 (728)
..|..++|||||||+|||++|||+|++|+|++.+||++|++||++++..+... .....++.+|+|+
T Consensus 241 --------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~g------~~~~~~~~~g~G~ 306 (309)
T d2ixta1 241 --------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYG------AAIGDDYASGFGF 306 (309)
T ss_dssp --------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTT------CCSSSBTTTBTCB
T ss_pred --------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcC------CccCCCcccCCCE
Confidence 68999999999999999999999999999999999999999999876543211 2334567889999
Q ss_pred cCc
Q 004824 566 INP 568 (728)
Q Consensus 566 in~ 568 (728)
+|+
T Consensus 307 ~~v 309 (309)
T d2ixta1 307 ARV 309 (309)
T ss_dssp CCC
T ss_pred ecC
Confidence 884
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=2.4e-41 Score=352.90 Aligned_cols=237 Identities=31% Similarity=0.405 Sum_probs=191.7
Q ss_pred CCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCC
Q 004824 101 ASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPR 180 (728)
Q Consensus 101 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 180 (728)
...+|+||+|+|||||||++||+|.++ +...+.+. ..+.
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~---------------------------~~~~~~~~--------------~~~~ 64 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYY--------------YSSR 64 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESS--------------SCSS
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC---------------------------ceeccCCC--------------CCcc
Confidence 455899999999999999999999854 11111111 1345
Q ss_pred CCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCC-------CcEEE
Q 004824 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDG-------VDVLS 252 (728)
Q Consensus 181 d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g-------~dVIN 252 (728)
|..+|||||||||+|+. .|+||+|+|+.+|++.... ...+.+..+++++.... ++|+|
T Consensus 65 d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n 130 (279)
T d2pwaa1 65 DGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVAS 130 (279)
T ss_dssp CSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEE
T ss_pred cccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheeccccccccccccccee
Confidence 77899999999999863 6999999999999988765 67788889999988643 45999
Q ss_pred eccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeeEEEcCCCcEEeee
Q 004824 253 LSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW-TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFK 331 (728)
Q Consensus 253 ~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~ 331 (728)
+|||.. ..+.+..++..+.++|+++|+||||++.... ..+...|++|+|||.+
T Consensus 131 ~s~g~~------~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~-------------------- 184 (279)
T d2pwaa1 131 LSLGGG------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD-------------------- 184 (279)
T ss_dssp ECCCEE------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC--------------------
T ss_pred ccCCCc------cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEe--------------------
Confidence 999982 3455666777889999999999999987643 3556789999999842
Q ss_pred ecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEee
Q 004824 332 SLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFIN 411 (728)
Q Consensus 332 s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~ 411 (728)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T d2pwaa1 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCc
Q 004824 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGL 491 (728)
Q Consensus 412 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 491 (728)
..+.+++||++||.. ||+|||.+|+++++.
T Consensus 185 -------------------------------~~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~----------- 214 (279)
T d2pwaa1 185 -------------------------------RYDRRSSFSNYGSVL--------DIFGPGTDILSTWIG----------- 214 (279)
T ss_dssp -------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEEETT-----------
T ss_pred -------------------------------ecCCCccccCCCCcc--------ccccccccccccccC-----------
Confidence 234679999999864 999999999999885
Q ss_pred ccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCc
Q 004824 492 LYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINP 568 (728)
Q Consensus 492 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~ 568 (728)
+.|..++|||||||+|||++|||+|++|.++++++|. |++||++.. ...+|+|++|+
T Consensus 215 --~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~-----------------~~~~g~g~~n~ 271 (279)
T d2pwaa1 215 --GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD-----------------LSNIPFGTVNL 271 (279)
T ss_dssp --TEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC-----------------CBSCCTTSCCE
T ss_pred --CcccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC-----------------CCCCCCCChhh
Confidence 6899999999999999999999999999999887775 777887532 22679999985
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=8.7e-41 Score=354.78 Aligned_cols=296 Identities=26% Similarity=0.326 Sum_probs=219.2
Q ss_pred CCCCCC-CCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 96 SGAWPA-SNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 96 ~~~~~~-~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
+.+|.. |++|+||+|||||||||++||+|.... + ...++...+.+...
T Consensus 11 ~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~----------------~-----~~~~~~~~~~~~~~---------- 59 (318)
T d1wmda2 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE----------------A-----FRGKITALYALGRT---------- 59 (318)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT----------------T-----TTTCEEEEEETTTT----------
T ss_pred hhHHHccCccccCeEEEEEcCCcCCCCcccccCc----------------c-----cCCcEEeecCCCCC----------
Confidence 456765 999999999999999999999997430 0 12334444433221
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC---CChHHHHHHHHHHHHCCCcEE
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG---VYSSDVVAAIDQALQDGVDVL 251 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVI 251 (728)
..+.|..||||||||||+|+... ..||||+|+|+.+|++...+ .....+..+++++...+++|+
T Consensus 60 --~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (318)
T d1wmda2 60 --NNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIH 126 (318)
T ss_dssp --TCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEE
T ss_pred --CCCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCcee
Confidence 34567899999999999997432 27999999999999998765 344557789999999999999
Q ss_pred EeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccc--cCCCceEEeccccccceeeeEEEcCCCcEEe
Q 004824 252 SLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLI--NGAPWLLTVGAGTIDREFEGSLTLGNGVQIN 329 (728)
Q Consensus 252 N~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~--~~ap~vitVgast~~~~~~~~~~~~~g~~~~ 329 (728)
|+|||.. ...........+...+.++++++|+|+||.|.....+. ...++++++.+.........
T Consensus 127 ~~S~g~~--~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------- 193 (318)
T d1wmda2 127 TNSWGAA--VNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFG----------- 193 (318)
T ss_dssp EECCCBC--CTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGC-----------
T ss_pred ecccccc--cccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccccc-----------
Confidence 9999983 43444455555666778999999999999998765543 34567777765321110000
Q ss_pred eeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEE
Q 004824 330 FKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAF 409 (728)
Q Consensus 330 g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~ 409 (728)
T Consensus 194 -------------------------------------------------------------------------------- 193 (318)
T d1wmda2 194 -------------------------------------------------------------------------------- 193 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcccccc
Q 004824 410 INVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQS 489 (728)
Q Consensus 410 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 489 (728)
........+..||++||..... .|||++|||.+|+++...........
T Consensus 194 -----------------------------~~~~~~~~~~~~s~~G~~~~~~--~~~~~~a~G~~i~~~~~~~~~~~~~~- 241 (318)
T d1wmda2 194 -----------------------------SYADNINHVAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSFW- 241 (318)
T ss_dssp -----------------------------GGGSCTTSBCTTSCCCCCTTSC--CCCCEEEECSSEEEECCTTCCGGGSS-
T ss_pred -----------------------------cccccccccccccccCCCcCCC--cccceeecCceEEeccccccccCccc-
Confidence 0012233678899999988765 89999999999999887643322111
Q ss_pred CcccCCceeeccccchhHHHHHHHHHHhhhC-----CCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCC
Q 004824 490 GLLYSNFNLMSGTSMATPHVAGVAGLLKAAH-----PDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAG 564 (728)
Q Consensus 490 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G 564 (728)
......|..++|||||||+|||++|||+|++ +.|++.+||++|++||++... +.+...||||
T Consensus 242 ~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~-------------~~~~~~~G~G 308 (318)
T d1wmda2 242 ANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-------------GYPNGNQGWG 308 (318)
T ss_dssp EEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-------------CSSCTTTTTC
T ss_pred cCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC-------------CCCCCCeeec
Confidence 1123578899999999999999999999975 468899999999999987643 2345589999
Q ss_pred ccCccccCC
Q 004824 565 HINPNKALD 573 (728)
Q Consensus 565 ~in~~~Al~ 573 (728)
+||+.+||+
T Consensus 309 ~ld~~~Al~ 317 (318)
T d1wmda2 309 RVTLDKSLN 317 (318)
T ss_dssp BCCHHHHHT
T ss_pred eecHHHHhC
Confidence 999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-38 Score=340.26 Aligned_cols=284 Identities=17% Similarity=0.177 Sum_probs=192.7
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeecc-ccccccCCCCc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFN-KGLIANNPKLK 173 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~-~~~~~~~~~~~ 173 (728)
++.+|..+++|+||+|||||||||++||+|.++- ...+.|. .+.+ ...
T Consensus 26 ~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~---------------------------~~~~~~~~~~~~----~~~ 74 (334)
T d1p8ja2 26 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY---------------------------DPGASFDVNDQD----PDP 74 (334)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB---------------------------CGGGCEETTTTB----SCC
T ss_pred HHHHHhcCCCCCCeEEEEEccCCCCCChhHhhcc---------------------------ccCCCccccCCC----Ccc
Confidence 3569999999999999999999999999998641 0011111 0000 001
Q ss_pred cCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH-CCCcEEE
Q 004824 174 VRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ-DGVDVLS 252 (728)
Q Consensus 174 ~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN 252 (728)
.+.....|..+|||||||||+|...++.. ..|+||+++++.+|++.. ...+.+.++.++++ .+++++|
T Consensus 75 ~~~~~~~~~~gHGT~vAgiia~~~~n~~~--------~~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n 143 (334)
T d1p8ja2 75 QPRYTQMNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLDG---EVTDAVEARSLGLNPNHIHIYS 143 (334)
T ss_dssp CCCCCTTCTTCHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSSS---CCCHHHHHHHHTSCTTTCCEEE
T ss_pred ccccccccCccchhhhhhhhhhccccccc--------cccccccccccchhhccc---cccchHHHHHHHhhhcCCcEEe
Confidence 11233457889999999999998654322 279999999999998753 34456677777775 6799999
Q ss_pred eccccCCCCCCC--------hhhHHHHHHHHHHhCCcEEEEecCCCCCCCCcccc----CCCceEEeccccccceeeeEE
Q 004824 253 LSLGLSLNGIFL--------EDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLIN----GAPWLLTVGAGTIDREFEGSL 320 (728)
Q Consensus 253 ~SlG~~~~~~~~--------~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~----~ap~vitVgast~~~~~~~~~ 320 (728)
+|||.. ..... ....+......+..+|+++|+||||++........ ..+.+++|++.+
T Consensus 144 ~S~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~--------- 213 (334)
T d1p8ja2 144 ASWGPE-DDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT--------- 213 (334)
T ss_dssp ECCBSC-CSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC---------
T ss_pred CCCCCC-CcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccc---------
Confidence 999984 11111 11222333445668999999999998765433221 234455555422
Q ss_pred EcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccc
Q 004824 321 TLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVY 400 (728)
Q Consensus 321 ~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 400 (728)
T Consensus 214 -------------------------------------------------------------------------------- 213 (334)
T d1p8ja2 214 -------------------------------------------------------------------------------- 213 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCc-----ee
Q 004824 401 IRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSL-----VL 475 (728)
Q Consensus 401 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~-----I~ 475 (728)
..+..+.||++|+.. ..+..+||.. +.
T Consensus 214 ------------------------------------------~~g~~~~~s~~~~~~------~~~~~~~~~~~~~~~~~ 245 (334)
T d1p8ja2 214 ------------------------------------------QFGNVPWYSEACSST------LATTYSSGNQNEKQIVT 245 (334)
T ss_dssp ------------------------------------------TTSCCCTTCCBCTTC------CEEEECCCSTTSCCEEE
T ss_pred ------------------------------------------cCCceeeecccCCcc------ccccccccccccccccc
Confidence 223456677777654 2355555533 22
Q ss_pred eccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCC
Q 004824 476 ASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFP 555 (728)
Q Consensus 476 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~ 555 (728)
+... ...|..++|||||||+|||++|||+|++|+|++.|||++|++||++............ ...
T Consensus 246 ~~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~--~~~ 310 (334)
T d1p8ja2 246 TDLR-------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNG--VGR 310 (334)
T ss_dssp EETT-------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECT--TSC
T ss_pred cccC-------------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccccccC--CCc
Confidence 2222 2578899999999999999999999999999999999999999998765443222221 122
Q ss_pred CCCCccCCCccCccccCC
Q 004824 556 ASPLDMGAGHINPNKALD 573 (728)
Q Consensus 556 ~~~~~~G~G~in~~~Al~ 573 (728)
..+..||+|+||+.+||+
T Consensus 311 ~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 311 KVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp EEBTTTBTCBCCHHHHHH
T ss_pred ccCCCCcceEeCHHHHHH
Confidence 234478999999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.8e-39 Score=342.84 Aligned_cols=287 Identities=21% Similarity=0.197 Sum_probs=202.0
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
+..+|..+++|+||+|||||||||++||+|.++-. .-+.++|.+.. .
T Consensus 35 ~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~-------------------------~~~~~~~~~~~--------~ 81 (339)
T d2id4a2 35 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------------------------AEGSWDFNDNT--------N 81 (339)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------------------------GGGCEETTTTB--------S
T ss_pred HHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc-------------------------cccccccccCC--------C
Confidence 45689999999999999999999999999986410 00122232211 1
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEEec
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLS 254 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S 254 (728)
......+..+||||||++|+|....+.. ..|+||+|+|+.++++.. .....++..++.+++.. .+|+|+|
T Consensus 82 ~~~~~~~~~~HGT~vag~iaa~~~~~~~--------~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~s 151 (339)
T d2id4a2 82 LPKPRLSDDYHGTRCAGEIAAKKGNNFC--------GVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDIYSCS 151 (339)
T ss_dssp CCCCCSTTTTHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSEEEEC
T ss_pred ccCCCcccccccceeeeccccccccccc--------ccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCEEecc
Confidence 1123456789999999999997543322 379999999999998753 36677778888877665 4899999
Q ss_pred cccCCCCCC-------ChhhHH-HHHHHHHHhCCcEEEEecCCCCCCCCcc--cc--CCCceEEeccccccceeeeEEEc
Q 004824 255 LGLSLNGIF-------LEDDAI-AVATFAAMEKGVLVVASAGNDGPSYWTL--IN--GAPWLLTVGAGTIDREFEGSLTL 322 (728)
Q Consensus 255 lG~~~~~~~-------~~~~~~-~~~~~~a~~~Gi~vV~AAGN~g~~~~~~--~~--~ap~vitVgast~~~~~~~~~~~ 322 (728)
||.. .... .....+ ..+...+..+|+++|+||||.+...... +. ..+.+++|+++
T Consensus 152 ~g~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~------------ 218 (339)
T d2id4a2 152 WGPA-DDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI------------ 218 (339)
T ss_dssp EESC-CSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE------------
T ss_pred CCCC-CCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc------------
Confidence 9974 1111 111222 2333456679999999999987654322 11 23344444442
Q ss_pred CCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccc
Q 004824 323 GNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIR 402 (728)
Q Consensus 323 ~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 402 (728)
T Consensus 219 -------------------------------------------------------------------------------- 218 (339)
T d2id4a2 219 -------------------------------------------------------------------------------- 218 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCC
Q 004824 403 SSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPIS 482 (728)
Q Consensus 403 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~ 482 (728)
...+..+.||++|+... ..++..+||..+.+.....
T Consensus 219 ---------------------------------------~~~g~~~~~s~~~~~~~----~~~~~~~~g~~~~s~~~~~- 254 (339)
T d2id4a2 219 ---------------------------------------DHKDLHPPYSEGCSAVM----AVTYSSGSGEYIHSSDING- 254 (339)
T ss_dssp ---------------------------------------CTTSCCCTTCCCCTTEE----EEEECSBTTBCEEEECSTT-
T ss_pred ---------------------------------------cccccccccccccCccc----eeeeeeccccccceeccCC-
Confidence 22335677788887653 4467778899998776542
Q ss_pred CccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCcc-ccCCCCCCCCCCCcc
Q 004824 483 SVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHI-KDASNNNFPASPLDM 561 (728)
Q Consensus 483 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~-~d~~~~~~~~~~~~~ 561 (728)
..|..++|||||||||||++|||+|++|+|++.|||.+|+.||+.+....... .+.. ..+.....|
T Consensus 255 -----------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~--~~~~~~~~~ 321 (339)
T d2id4a2 255 -----------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSA--MGKKYSHRY 321 (339)
T ss_dssp -----------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECS--SSSEEBTTT
T ss_pred -----------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccC--CCCCcCCCc
Confidence 57889999999999999999999999999999999999999999876543221 1111 223345579
Q ss_pred CCCccCccccCCC
Q 004824 562 GAGHINPNKALDP 574 (728)
Q Consensus 562 G~G~in~~~Al~~ 574 (728)
|||+||+.+||+.
T Consensus 322 G~G~ln~~~Av~~ 334 (339)
T d2id4a2 322 GFGKIDAHKLIEM 334 (339)
T ss_dssp BTCBCCHHHHHHH
T ss_pred cchhhCHHHHHHH
Confidence 9999999999874
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.95 E-value=4.8e-29 Score=267.57 Aligned_cols=316 Identities=17% Similarity=0.153 Sum_probs=181.0
Q ss_pred CCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCC
Q 004824 100 PASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSP 179 (728)
Q Consensus 100 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 179 (728)
..+++|+||+|||||||||++||+|.+. |+. |.. ... ...+
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~-------~~~-----------~~~-------------~~~~ 58 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FAS-------LGV-----------SAP-------------QVVS 58 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH-------TTC-----------CCC-------------CEEE
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh-------cCC-----------CCC-------------CCce
Confidence 4689999999999999999999999742 100 000 000 0112
Q ss_pred CCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH---CCCcEEEeccc
Q 004824 180 RDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ---DGVDVLSLSLG 256 (728)
Q Consensus 180 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~---~g~dVIN~SlG 256 (728)
.+..+|+||+++++++...... .....+.||||+|+|+.+|++.. ...++.+|++++. .+++|||+|||
T Consensus 59 ~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~----~~~~~~~i~~~~~~~~~~~~Vin~S~G 130 (357)
T d1t1ga_ 59 VSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNT----DAGFLNAITTAVHDPTHKPSIVSISWG 130 (357)
T ss_dssp EESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSS----HHHHHHHHHHHHHCTTTCCSEEEECCC
T ss_pred eCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccC----CCchHHHHHHHHHhhhcCCeEEecccc
Confidence 2345677777666654321100 00112489999999999999643 3455666666664 58999999999
Q ss_pred cCCCCC--CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC--------ccccCCCceEEeccccccceeeeEEEcCCCc
Q 004824 257 LSLNGI--FLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW--------TLINGAPWLLTVGAGTIDREFEGSLTLGNGV 326 (728)
Q Consensus 257 ~~~~~~--~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~--------~~~~~ap~vitVgast~~~~~~~~~~~~~g~ 326 (728)
.. ... ......+...+..+..+|+++|+|+||+|.... ..+...+++++|++....... +.
T Consensus 131 ~~-~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~ 201 (357)
T d1t1ga_ 131 GP-EDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASA--------GR 201 (357)
T ss_dssp EE-GGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECS--------SC
T ss_pred cC-cCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCC--------Cc
Confidence 83 111 122344556666778899999999999985432 223356788888875332110 00
Q ss_pred EEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCcc
Q 004824 327 QINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFP 406 (728)
Q Consensus 327 ~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p 406 (728)
....+.+.... .. .....|.
T Consensus 202 -~~~~~~~~~~~----------------------------------------~~-~~~~~g~------------------ 221 (357)
T d1t1ga_ 202 -IERETVWNDGP----------------------------------------DG-GSTGGGV------------------ 221 (357)
T ss_dssp -EEEEEECBCHH----------------------------------------HH-CBCCCEE------------------
T ss_pred -cccceeccccc----------------------------------------cc-ccccCCc------------------
Confidence 00000000000 00 0000000
Q ss_pred EEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCcee--eccCCCCCc
Q 004824 407 AAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVL--ASWSPISSV 484 (728)
Q Consensus 407 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~--sa~~~~~~~ 484 (728)
+..+ ............+++.+++...+ .|||+.+++.... +....
T Consensus 222 ------------------------s~~~---~~p~~~~~~~~~~~~~~~~~~~~--~~pd~~~~~~~~~~~~~~~~---- 268 (357)
T d1t1ga_ 222 ------------------------SRIF---PLPSWQERANVPPSANPGAGSGR--GVPDVAGNADPATGYEVVID---- 268 (357)
T ss_dssp ------------------------CSSS---CCCGGGTTSCCCCCSSTTCCCCC--EECSEEEECCTTEEEEEEET----
T ss_pred ------------------------cccc---ccCcccccccccccccCCCCCCc--eecceecccCCCCceEEecC----
Confidence 0000 00011223556777888777666 9999999976654 33332
Q ss_pred cccccCcccCCceeeccccchhHHHHHHHHHHhhhCCC---CCHHHHHHHHHhccccCCCCCCcc--ccCCCCCCCCCCC
Q 004824 485 AEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPD---WSPAAIRSALVTTASPLDNTLSHI--KDASNNNFPASPL 559 (728)
Q Consensus 485 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~---lsp~~ik~~L~~TA~~~~~~g~~~--~d~~~~~~~~~~~ 559 (728)
+.|..++|||||||||||++|||+|+++. +...+++++...+..+........ ........+..+.
T Consensus 269 ---------~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d~ 339 (357)
T d1t1ga_ 269 ---------GETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDP 339 (357)
T ss_dssp ---------TEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSBT
T ss_pred ---------CceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcccCccCCCC
Confidence 68999999999999999999999998643 223344433333322221100000 0000012334566
Q ss_pred ccCCCccCccccCC
Q 004824 560 DMGAGHINPNKALD 573 (728)
Q Consensus 560 ~~G~G~in~~~Al~ 573 (728)
.+|+|++|+.++++
T Consensus 340 ~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 340 CTGLGSPIGIRLLQ 353 (357)
T ss_dssp TTBTCEECHHHHHH
T ss_pred CccCchhhHHHHHH
Confidence 88999999887765
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=5.8e-28 Score=261.04 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=93.2
Q ss_pred CCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHH-CCCcEEEeccccC
Q 004824 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQ-DGVDVLSLSLGLS 258 (728)
Q Consensus 181 d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~-~g~dVIN~SlG~~ 258 (728)
+..+||||+++++.+... ...+.|+||+|+|+.++++.+.+ ....+++++|+||++ .+++|||+|||..
T Consensus 66 ~~~~~~~~~~~~~e~~ld---------~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~ 136 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDLD---------SQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWC 136 (369)
T ss_dssp TTSCCCBCHHHHHHHHHH---------HHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEE
T ss_pred CCCCCCCCCCcceeeccc---------cccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeecccccc
Confidence 466899999999876531 11247999999999999998876 677889999999996 5799999999983
Q ss_pred C--CCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-------------ccccCCCceEEecccc
Q 004824 259 L--NGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW-------------TLINGAPWLLTVGAGT 311 (728)
Q Consensus 259 ~--~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~-------------~~~~~ap~vitVgast 311 (728)
. .......+.+..++.++..+|++||+||||+|.... ..+...+++++|+++.
T Consensus 137 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 137 EADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred ccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 0 011234456667777888999999999999986432 2334568999999854
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=97.81 E-value=1e-05 Score=63.25 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=39.8
Q ss_pred CcccEEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEecCCccc
Q 004824 37 ISSKLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLA 80 (728)
Q Consensus 37 ~~~~i~~~y~~~~ngfs~~l~~~~~~~L~~~p~V~~V~~~~~~~ 80 (728)
.|.+|.++|. .||||+++|++++++.|+++|+|.+|++++.++
T Consensus 27 ~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~ 69 (71)
T d1scjb_ 27 KGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAH 69 (71)
T ss_dssp TTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEE
T ss_pred cCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEE
Confidence 3689999998 799999999999999999999999999998765
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=97.26 E-value=0.00012 Score=57.24 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=34.7
Q ss_pred cccEEEEec-ceeeEEEEEeCHHHHHHHhcCCC--eEEEecCC
Q 004824 38 SSKLVYTYA-NSIHGFSATLTVSELETLKKLPG--YISSTPDR 77 (728)
Q Consensus 38 ~~~i~~~y~-~~~ngfs~~l~~~~~~~L~~~p~--V~~V~~~~ 77 (728)
+.++.+.|. +.|+||+++|+++.+++|+++|+ |.+||++.
T Consensus 29 ~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 29 GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 356778887 68999999999999999999665 99999986
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0012 Score=61.02 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=47.0
Q ss_pred eeeEEEccCCCCCccCc---cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCC
Q 004824 342 QVSLAFMDACDSVTELK---KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSA 395 (728)
Q Consensus 342 ~~~lv~~~~c~~~~~~~---~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 395 (728)
+-++||...|...++.. +++|||+|++ |.+.+.+|..+|+.+||.|+|+|.+..
T Consensus 40 ~g~lVy~n~G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~ 97 (193)
T d1de4c2 40 TGKLVHANFGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQT 97 (193)
T ss_dssp EECEEECSTTCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTT
T ss_pred eEEEEEccCCCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCcc
Confidence 56899998887766542 3999999999 999999999999999999999998754
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.18 E-value=0.027 Score=46.52 Aligned_cols=89 Identities=9% Similarity=-0.054 Sum_probs=62.1
Q ss_pred CCCCceeeeccCCCCCCCCceeEEEEEEEEeCCCCCeE-EEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccC
Q 004824 616 LNYPSFITFFNDYDSSSDEKVVKEFWRTVTNAEEVGTA-YTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLL 694 (728)
Q Consensus 616 ln~psi~~~~~~~~~~~~~~~~~t~~rtvtn~g~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 694 (728)
+..|++++.-. .+.+++.+|+|.|....+ -++.+..|.|=+++. ....+. +|++++++++++++...
T Consensus 6 ~t~p~~~v~pG---------~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~--~~~~L~-pG~s~~~~~~Vt~p~~a 73 (103)
T d1w8oa1 6 FTIPDVALEPG---------QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQG--SVEPLM-PGRQAKGQVTITVPAGT 73 (103)
T ss_dssp EECCCEEECTT---------CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEE--EECCBC-TTCEEEEEEEEECCTTC
T ss_pred ccCcceeeCCC---------CeEEEEEEEEeCCCCceeeeeEEEcCCCCccccC--cceeeC-CCCcEEEEEEEECCCCC
Confidence 45677777432 578899999999977644 467788999988754 445565 89999999999998665
Q ss_pred CCceEEEEEEEEeCCCCcEEEeEE
Q 004824 695 EKDVVYGSISWVDDDGRYEVRSPI 718 (728)
Q Consensus 695 ~~~~~~G~i~~~~~~~~~~v~~P~ 718 (728)
..+.|.=.+..++ +.......+
T Consensus 74 ~~G~Y~i~~~a~~--~~~~~s~t~ 95 (103)
T d1w8oa1 74 TPGRYRVGATLRT--SAGNASTTF 95 (103)
T ss_dssp CCEEEEEEEEEEE--TTEEEEEEE
T ss_pred CCceEEEEEEEEe--CCcceEEEE
Confidence 5444444566777 334333333
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0027 Score=60.52 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=47.5
Q ss_pred CeeeEEEccCCCCCccC------c-cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCC
Q 004824 341 SQVSLAFMDACDSVTEL------K-KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSA 395 (728)
Q Consensus 341 ~~~~lv~~~~c~~~~~~------~-~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 395 (728)
-+-++||...|...++. . +++|||+|++ |.+.+.+|..+|+..||.|+|+|++..
T Consensus 53 v~g~~VyvnyG~~~Df~~L~~~~gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP~ 115 (233)
T d3bi1a2 53 PEGDLVYVNYARTEDFFKLERDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPA 115 (233)
T ss_dssp CEECEEECTTCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHH
T ss_pred eeEEEEEecCCcHHHHHHHHHhcCCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecChH
Confidence 35689999999877753 2 2999999999 999999999999999999999999743
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