Citrus Sinensis ID: 004829

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------73
Protein Sequence
MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKSPRSPLSPQSPRSDSLDLAIDGIVETSIEQLYLNICEMESSEQSPSRASYGSYGEESRIDSELRHLVGDIGEVEITKNVVVEKNEDSRSNGGEFTPKIVSESPDRRAVKKGKKKYSQLNISEASTKSSSQGKSSNERPPADKRYEKGRRKQNNIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKEDAIEVS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccEEEEEEEEEEEcccccccccccccccccccccccEEcccccccccccccccccccccccccHccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mpglamdalngdsggvyeanggymgykdsfvqqksprsplspqsprsdsldlAIDGIVETSIEQLYLNICEmesseqspsrasygsygeesriDSELRHLVGDIGEVEITKNVVveknedsrsnggeftpkivsespdrravkkGKKKYSQLNIseastksssqgkssnerppadkryekgrrKQNNIFSARKQRKFASLIAKFQngaedplaaglgnpalgpflLKQTREMISSGENPQKALELAKRAMKSFEicangkpslEQVMCLHVLAAIHCSlgqyneaipvlersveipvledgqdHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIhrentspasiEEAADRRLMGLICDSKGDYEAALEHYVLASMSmaangheldvasidcSIGDAYLSLARFDEAIFSYHKALTAfksakgenhpaVASVFVRLADLYHkigklrdsksYCENALKiygkpnhgipseeiASGLIDIAAIYQSMNELEQAVKLLNKALKIygktpgqqstiAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEkeygpyhhdtlgvysnlagtydamGRIDDAIEILEYVVGMREeklgtanpdvEDEKRRLAELLKEAGrvrnrksrSLVTFLDsnsqnlkedaievs
Flexible Loop (DISEMBL)
MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKSPrsplspqsprsdSLDLAIDGIVETSIEQLYLNICEmesseqspsRASYGSYGEESRIDSELRHLVgdigeveitknvvveknedsrsnggeftpkivsespdrravkkgkkkysqlniseastksssqgkssnerppadkryekgrrkqnnifsarkQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIhrentspasieEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAfksakgenhPAVASVFVRLADLYHKIGKLRDSKSYCENALKIygkpnhgipSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGktpgqqstiAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEklgtanpdvedeKRRLAELLkeagrvrnrksrslvtfldsnsqnlkedaievs
Low Complexity Region (SEG)
MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKsprsplspqsprsdsldlAIDGIVETSIEQLYLNICEMESSEQSPSRASYGSYGEESRIDSELRHLVGDIGEVEITKNVVVEKNEDSRSNGGEFTPKIVSESPDRRAVKKGKKKYSQLNIseastksssqgkssNERPPADKRYEKGRRKQNNIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKEDAIEVS
Disordered region (IsUnstruct)
*********************GYM**************************DLAIDGIVETSIEQLYLNICE*************************LRHLVGDIGEVEITKNVVV**********************************************************************************ASLIAKFQ********AGLGNPALGPFLL************************KSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR************DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR*******************************************************
Disordered Region (DISOPRED)
*PGLA***************************************************IVETSIEQLYLNIC**********************IDSELRHLVGDIGEVE*********************************************************************YEKGRRKQNNIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVT*****************
Disordered Region (DISEMBL)
MPGLAMDALNGDSGGVYEANGGYMGYKDSFV*****************SLDLAIDGIVETSIEQLYLNICE*********************IDSELRHLVGDIGEVEITKNVVVEK*********EFTPKIVSE******************************************YEKGRRKQNNIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKEDAIEVS
Disordered Region (DISPRO)
*PGLAMDALNGDSGGVY*******************************SLDLAIDGIVETSIEQLYLNICEMES****************SRIDSELRHLVGDIGEVEITKNVVVEKN***********************************************************YEKGRRKQNNIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKSPRSPLSPQSPRSDSLDLAIDGIVETSIEQLYLNICEMESSEQSPSRASYGSYGEESRIDSELRHLVGDIGEVEITKNVVVEKNEDSRSNGGEFTPKIVSESPDRRAVKKGKKKYSQLNISEASTKSSSQGKSSNERPPADKRYEKGRRKQNNIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDxxxxxxxxxxxxxxxxxxxxxxxxxxxxPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDxxxxxxxxxxxxxxxxxxxxxKSRSLVTFLDSNSQNLKEDAIEVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	728	2.2.26 [Sep-21-2011]
Q7Z494	1330	Nephrocystin-3 OS=Homo sa	yes	no	0.321	0.175	0.238	5e-14
Q6AZT7	1300	Nephrocystin-3 OS=Xenopus	N/A	no	0.358	0.200	0.229	2e-12
Q7TNH6	1325	Nephrocystin-3 OS=Mus mus	yes	no	0.335	0.184	0.222	3e-11
P0CI65	1303	Nephrocystin-3 OS=Danio r	yes	no	0.362	0.202	0.240	4e-11
A0JM23	1311	Nephrocystin-3 OS=Xenopus	yes	no	0.358	0.199	0.223	3e-10
P46822	540	Kinesin light chain OS=Ca	no	no	0.326	0.440	0.265	1e-09
P46824	508	Kinesin light chain OS=Dr	yes	no	0.263	0.377	0.284	3e-09
Q9NSK0	619	Kinesin light chain 4 OS=	no	no	0.263	0.310	0.262	2e-08
Q9H0B6	622	Kinesin light chain 2 OS=	no	no	0.263	0.308	0.267	2e-08
P46825	571	Kinesin light chain OS=Do	N/A	no	0.278	0.355	0.266	3e-08

>sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 124/289 (42%), Gaps = 55/289 (19%)

Query: 439  IGDAYLSLARF-------DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKL 491
            + D Y +L RF        +AI    ++L   ++A   +HP VA    +LA +Y +  K 
Sbjct: 942  LADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKF 1001

Query: 492  RDSKSYCENALKI----YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
             +++   + AL+I    YG  +H   + E+ +    +A +YQ  N+ EQA     K+ KI
Sbjct: 1002 GNAEQLYKQALEISENAYGA-DHPYTARELEA----LATLYQKQNKYEQAEHFRKKSFKI 1056

Query: 548  YGKTPGQQSTIAGIEA-------------------------QMGVMYYMTGNYSDSYNTL 582
            + K   ++  + G                            ++GV+YY+  N       L
Sbjct: 1057 HQKAIKKKGNLYGFALLRRRALQLEELTLGKDTPDNARTLNELGVLYYLQNN-------L 1109

Query: 583  KSAISKFRTSGEKKSALFGI-------ALNQMGLACVQRYTINEAADLFEEARTILEKEY 635
            ++A    + S E +  + G        +LN +   C ++   ++A +L+E A  I  +  
Sbjct: 1110 ETADQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYDKAEELYERALDIRRRAL 1169

Query: 636  GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDV 684
             P H        +LA  Y  MG++D A+ + E  V +R++  G  +P V
Sbjct: 1170 APDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSV 1218

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling which regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.
Homo sapiens (taxid: 9606)

>sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 138/336 (41%), Gaps = 75/336 (22%)

Query: 438  SIGDAYLSLARF-------DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK 490
            S+ D Y +L RF        +A+    ++L   ++A   +HP+VA    +LA +Y +  K
Sbjct: 914  SLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYMQSKK 973

Query: 491  LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550
              +++   + AL+I  +  +G     +A  L  +A +YQ  N+ EQA +L  K+LKI  K
Sbjct: 974  FGNAEQLYKQALEI-SENAYGSEHLRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQK 1032

Query: 551  TPGQQSTIAGIEA-------------------------QMGVMYYMTGNYSDSYNTLK-- 583
            +  ++ ++ G                            ++GV+YY+  N   +   LK  
Sbjct: 1033 SARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRS 1092

Query: 584  ----------------------SAISKFRTSGEKKSALFGIALN---------------- 605
                                  +A+   +   +K   L+  AL+                
Sbjct: 1093 LEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYT 1152

Query: 606  --QMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI 663
               + +   ++  +++A  L+E A  I +K +GP H        NLA  Y  M + DDA+
Sbjct: 1153 VKHLAVLYKRKGKLDKAVPLYELAVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDAL 1212

Query: 664  EILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG 699
             + E  + + E+ LG  +P V +  + LA L  E G
Sbjct: 1213 PLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEG 1248

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus laevis (taxid: 8355)

>sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 116/279 (41%), Gaps = 35/279 (12%)

Query: 439  IGDAYLSLARF-------DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKL 491
            + D Y +L RF        +A+    ++L   ++A   +HP VA    +LA +Y +  K 
Sbjct: 937  LADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHPRVAQSLHQLAGVYVQWKKF 996

Query: 492  RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551
             D++   + AL+I  +  +G      A  L  +A +Y   N+ EQA     K++ I  + 
Sbjct: 997  GDAEQLYKQALEI-SENAYGADHPHAARELEALATLYHKQNKYEQAEHFRKKSVIIRQQA 1055

Query: 552  PGQQSTIAGIEA-------------------------QMGVMYYMTGNYSDSYNTLKSAI 586
              ++ ++ G                            ++GV+Y++  N   +   LK ++
Sbjct: 1056 TRRKGSLYGFALLRRRALQLEELTLGKDKPENARTLNELGVLYFLQNNLETAEQFLKRSL 1115

Query: 587  S-KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV 645
              + R  G         +LN +   C ++    +A +L+E A  I  +   P H      
Sbjct: 1116 EMRERVLGPDHPDC-AQSLNNLAALCNEKKQYEKAEELYERALDIRRRALAPDHPSLAYT 1174

Query: 646  YSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDV 684
              +LA  Y   G++D A+ + E  V +R++  G  +P V
Sbjct: 1175 VKHLAILYKKTGKVDKAVPLYELAVEIRQKSFGPKHPSV 1213

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Mus musculus (taxid: 10090)

>sp|P0CI65|NPHP3_DANRE Nephrocystin-3 OS=Danio rerio GN=nphp3 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 139/354 (39%), Gaps = 90/354 (25%)

Query: 420  SMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV 479
            SMS  AN +E        ++G     L    +A+    ++L   ++A   +HP+VA    
Sbjct: 916  SMSRLANLYE--------TLGRFLKDLGLLSQAVAPLQRSLEIRETALDPDHPSVAQSLH 967

Query: 480  RLADLYHKIGKL-------RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMN 532
            +LA +Y    K        + +   CENA   YG P H   + E+ S    ++ +YQ  N
Sbjct: 968  QLAGVYVHWRKFGNAEQLYKQAMEICENA---YG-PEHSTVARELDS----LSLLYQKQN 1019

Query: 533  ELEQAVKLLNKALKIYGKTPGQQSTIAGIEA-------------------------QMGV 567
            + EQA KL  +++KI  KT  Q+  + G                            ++GV
Sbjct: 1020 KYEQAEKLRKRSVKIRQKTARQKGHMYGFALLKRRALQLEELTLGKDSTDCAKTLNELGV 1079

Query: 568  MYYMTGNY-------------------------SDSYNTLKSAISK---FRTSGE----- 594
            +YY+  N                          + S N L +  S+   + ++ E     
Sbjct: 1080 LYYLQNNLDAAKLFLTRSLEMRQRVLGPDHPDCAQSLNNLAALHSERKEYESAEELYERA 1139

Query: 595  ---KKSAL------FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV 645
               +K AL          L  + +   +R  + +A  L+E A  I EK +GP H      
Sbjct: 1140 LDIRKRALAPDHPSLAYTLKHLAMLYKRRGKLEKAVPLYELALEIREKSFGPKHPSVATA 1199

Query: 646  YSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG 699
              NLA  Y  + +  DA+ + E  + + E+ LG  +P V +  + LA L  E G
Sbjct: 1200 LVNLAVLYCQLKQHSDALPLYERALKVYEDSLGRLHPRVGETLKNLAVLSYEEG 1253

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Danio rerio (taxid: 7955)

>sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 136/336 (40%), Gaps = 75/336 (22%)

Query: 438  SIGDAYLSLARF-------DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK 490
            S+ D Y +L RF        +A+    ++L   ++A   +HP+VA    +LA +Y +  K
Sbjct: 925  SLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVQSKK 984

Query: 491  LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550
              +++   + AL+I  +  +G     +A  L  +A +YQ  N+ EQA +L  K+LKI  K
Sbjct: 985  FGNAEQLYKQALEI-SENAYGSEHMRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQK 1043

Query: 551  TPGQQSTIAGIEA-------------------------QMGVMYYMTGNYSDSYNTLK-- 583
            +  ++ ++ G                            ++GV+YY+  N   +   LK  
Sbjct: 1044 SARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRS 1103

Query: 584  ----------------------SAISKFRTSGEKKSALFGIALN---------------- 605
                                  +A+   +   +K   L+  AL+                
Sbjct: 1104 LEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYT 1163

Query: 606  --QMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI 663
               + +   ++  +++A  L+E A  I +K +GP H        NLA  Y  M +  +A 
Sbjct: 1164 VKHLAVLYKRKGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQMKKQAEAS 1223

Query: 664  EILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG 699
             + E  + + E+ LG  +P V +  + LA L  E G
Sbjct: 1224 PLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEG 1259

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus tropicalis (taxid: 8364)

>sp|P46822|KLC_CAEEL Kinesin light chain OS=Caenorhabditis elegans GN=klc-2 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 359 EAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICD--SKGDYEAA--LE 414
           E  + + QF++     QMA   +     PA +     R L  L+    S+G YE A  L 
Sbjct: 175 EEDMNASQFNQPTPANQMAASANVGYEIPARL-----RTLHNLVIQYASQGRYEVAVPLC 229

Query: 415 HYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV 474
              L  +   +     DVA++   +   Y    ++ EA    ++AL+  +   GE+HPAV
Sbjct: 230 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAANLLNEALSIREKCLGESHPAV 289

Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534
           A+    LA L+ K GK +D++  C+ AL+I  K   G    ++A  L ++A + Q+  + 
Sbjct: 290 AATLNNLAVLFGKRGKFKDAEPLCKRALEIREKV-LGDDHPDVAKQLNNLALLCQNQGKY 348

Query: 535 EQAVKLLNKALKIYGKTPG-QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF---- 589
           E+  K   +AL+IY    G     +A  +  +   Y   G Y ++    K  +++     
Sbjct: 349 EEVEKYYKRALEIYESKLGPDDPNVAKTKNNLSSAYLKQGKYKEAEELYKQILTRAHERE 408

Query: 590 --RTSGEKKSALFGIA 603
             + SGE K  ++ IA
Sbjct: 409 FGQISGENK-PIWQIA 423

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|P46824|KLC_DROME Kinesin light chain OS=Drosophila melanogaster GN=Klc PE=1 SV=1

 Score = 64.7 bits (156), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 86/197 (43%), Gaps = 5/197 (2%)

Query: 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN-HGIPSEEIASGLIDIAAIYQS 530
           PA       L   Y   G+   +   C+ AL+   + + H  P  ++A+ L  +A +Y+ 
Sbjct: 183 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHP--DVATMLNILALVYRD 240

Query: 531 MNELEQAVKLLNKALKIYGKTPGQ-QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF 589
            N+ ++A  LLN AL I GKT G+    +A     + V+Y   G Y D+    K A+   
Sbjct: 241 QNKYKEAANLLNDALSIRGKTLGENHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALEIR 300

Query: 590 RTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNL 649
                K        LN + L C  +   +E    ++ A  I E + GP   +     +NL
Sbjct: 301 EKVLGKDHPDVAKQLNNLALLCQNQGKYDEVEKYYQRALDIYESKLGPDDPNVAKTKNNL 360

Query: 650 AGTYDAMGRIDDAIEIL 666
           AG Y   GR  +A EIL
Sbjct: 361 AGCYLKQGRYTEA-EIL 376

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Drosophila melanogaster (taxid: 7227)

>sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 6/198 (3%)

Query: 396 RRLMGLICD--SKGDYEAA--LEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDE 451
           R L  L+    ++G YE A  L    L  +   +     DVA++   +   Y    ++ E
Sbjct: 212 RTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKE 271

Query: 452 AIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511
           A    + AL+  +S  G +HPAVA+    LA LY K GK ++++  C+ AL+I  K   G
Sbjct: 272 AAHLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKV-LG 330

Query: 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY-GKTPGQQSTIAGIEAQMGVMYY 570
               ++A  L ++A + Q+  + E   +   +AL IY G+       +A  +  +   Y 
Sbjct: 331 TNHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYL 390

Query: 571 MTGNYSDSYNTLKSAISK 588
             G Y+++    K  +++
Sbjct: 391 KQGKYAEAETLYKEILTR 408

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q9H0B6|KLC2_HUMAN Kinesin light chain 2 OS=Homo sapiens GN=KLC2 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 6/198 (3%)

Query: 396 RRLMGLICD--SKGDYEAA--LEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDE 451
           R L  L+    S+G YE A  L    L  +   +     DVA++   +   Y    ++ E
Sbjct: 199 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKE 258

Query: 452 AIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511
           A    + AL   +   G++HPAVA+    LA LY K GK ++++  C+ AL+I  K   G
Sbjct: 259 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK-VLG 317

Query: 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPG-QQSTIAGIEAQMGVMYY 570
               ++A  L ++A + Q+  + E+      +AL+IY    G     +A  +  +   Y 
Sbjct: 318 KFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 377

Query: 571 MTGNYSDSYNTLKSAISK 588
             G Y D+    K  +++
Sbjct: 378 KQGKYQDAETLYKEILTR 395

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Homo sapiens (taxid: 9606)

>sp|P46825|KLC_DORPE Kinesin light chain OS=Doryteuthis pealeii PE=2 SV=1

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 15/218 (6%)

Query: 385 TSPASIEEAAD---------RRLMGLICD--SKGDYEAA--LEHYVLASMSMAANGHELD 431
           T P+++ +AA          R L  L+    S+G YE A  L    L  +   +     D
Sbjct: 201 TQPSAMAQAASGGCEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD 260

Query: 432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKL 491
           VA++   +   Y    ++ EA    + AL   +   G +HPAVA+    LA LY K GK 
Sbjct: 261 VATMLNILALVYRDQGKYKEAANLLNDALGIREKTLGPDHPAVAATLNNLAVLYGKRGKY 320

Query: 492 RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551
           +D++  C+ AL I  K   G    ++A  L ++A + Q+  + E+  +   +AL+IY K 
Sbjct: 321 KDAEPLCKRALVIREKV-LGKDHPDVAKQLNNLALLCQNQGKYEEVERYYQRALEIYQKE 379

Query: 552 PG-QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588
            G     +A  +  +   Y   G Y  +    K  +++
Sbjct: 380 LGPDDPNVAKTKNNLASAYLKQGKYKQAEILYKEVLTR 417

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Loligo pealeii (taxid: 1051067)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	728
359488843	710	PREDICTED: uncharacterized protein LOC10	0.968	0.992	0.716	0.0
359491584	757	PREDICTED: uncharacterized protein LOC10	0.994	0.956	0.691	0.0
356511660	702	PREDICTED: uncharacterized protein LOC10	0.958	0.994	0.719	0.0
296087669	670	unnamed protein product [Vitis vinifera]	0.917	0.997	0.693	0.0
270342119	711	kinesin light chain-like protein [Phaseo	0.973	0.997	0.707	0.0
356571352	700	PREDICTED: uncharacterized protein LOC10	0.954	0.992	0.716	0.0
255540685	767	kinesin light chain, putative [Ricinus c	0.997	0.946	0.667	0.0
449477406	736	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.994	0.983	0.654	0.0
449440678	736	PREDICTED: uncharacterized protein LOC10	0.987	0.976	0.651	0.0
255552570	621	kinesin light chain, putative [Ricinus c	0.829	0.972	0.773	0.0

>gi|359488843|ref|XP_002274441.2| PREDICTED: uncharacterized protein LOC100254332 [Vitis vinifera]

 Score = 1048 bits (2711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/731 (71%), Positives = 597/731 (81%), Gaps = 26/731 (3%)

Query: 1   MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKSPRSPLSPQSPRSDSLDLAIDGIVET 60
           MPGL MD L+ D    Y    G+           SP S LSPQS  S S+DL IDG++ T
Sbjct: 1   MPGLVMDGLHRDGMANYTPKEGF---------SNSPVSALSPQSHESGSIDLVIDGVINT 51

Query: 61  SIEQLYLNICEMESSEQSPSRASYGSYGEESRIDSELRHLVGDI-GEVEITKNVVVEKN- 118
           SIEQLY N+CEM+SS+QSPSR S+ SYG ESRIDSEL HLVG + G+ E+ K VV+ KN 
Sbjct: 52  SIEQLYHNVCEMQSSDQSPSRRSFISYGNESRIDSELYHLVGGLFGDAEVMKEVVMMKNK 111

Query: 119 -EDSRSNGGEFTPKIVSESPDRRAVKKGKKKYSQLNI-SEASTKSSSQGKSSNERPPADK 176
            ED+  N  +F       + ++       K+ S L++ SE S KS+      NERPP DK
Sbjct: 112 GEDNEGNLTQF-------ASEKSVPSLQWKRPSHLHLESEGSPKSNP-----NERPPIDK 159

Query: 177 RYEKGRRKQNNIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSG 236
           R E+  RK N +   RKQ+ FAS + KF NG ED L AGL NP LGPFLLKQTR++ISSG
Sbjct: 160 RRERNLRKPNGVIPIRKQKNFASGV-KFHNGTEDLLEAGLDNPDLGPFLLKQTRDLISSG 218

Query: 237 ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIP 296
           ENPQKALELA RA+KSFEI  NGKP+LE VMCLHV+AAI+CSLGQY+EAIP LERS+EIP
Sbjct: 219 ENPQKALELALRAVKSFEITGNGKPNLELVMCLHVIAAIYCSLGQYDEAIPSLERSIEIP 278

Query: 297 VLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY 356
           V+E+GQ+HALAKF GCMQLGDTYAM+GQIENSILCYTAGLEIQRQVLGE D R GETCRY
Sbjct: 279 VIEEGQNHALAKFVGCMQLGDTYAMIGQIENSILCYTAGLEIQRQVLGEMDSRFGETCRY 338

Query: 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY 416
           +AEAHVQ+LQFDEA+K+CQMAL+IH++N +PAS+EEAADRRLM LICDSKGDYEAALEHY
Sbjct: 339 LAEAHVQALQFDEAKKLCQMALNIHKKNGTPASLEEAADRRLMALICDSKGDYEAALEHY 398

Query: 417 VLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVAS 476
           VLA M+MAANG E+D ASIDCSIGD YLSLAR+DEA+FSY KALT FKS KGENHP VAS
Sbjct: 399 VLAGMAMAANGQEIDAASIDCSIGDTYLSLARYDEAVFSYQKALTVFKSTKGENHPTVAS 458

Query: 477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQ 536
           VFVRLADLY+K+GKLR+SKSYCENAL++YGKPN GIPSEEIASGLIDI+AI++SMNELEQ
Sbjct: 459 VFVRLADLYNKVGKLRESKSYCENALRLYGKPNPGIPSEEIASGLIDISAIFESMNELEQ 518

Query: 537 AVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK 596
           A+KLL KALKIYG  PGQQSTIAGIEAQMGV+YYM GNYS SYN+   AISK R SGEKK
Sbjct: 519 ALKLLQKALKIYGNAPGQQSTIAGIEAQMGVIYYMMGNYSASYNSFSCAISKLRASGEKK 578

Query: 597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM 656
           SA  GIALNQMGLACVQRY I EAA+LFEEAR+ILEKEYGP H DTLG+YSNLAGTYDAM
Sbjct: 579 SAFLGIALNQMGLACVQRYAIGEAAELFEEARSILEKEYGPCHPDTLGIYSNLAGTYDAM 638

Query: 657 GRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN 716
           GR++DAIEILEYVVG+REEKLGTANPDV+DEKRRL ELL EAGRVR+RK+RSL TFLD+N
Sbjct: 639 GRLEDAIEILEYVVGVREEKLGTANPDVDDEKRRLTELLTEAGRVRSRKTRSLQTFLDTN 698

Query: 717 SQNLKEDAIEV 727
            Q    DAI+V
Sbjct: 699 PQTTINDAIKV 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491584|ref|XP_002279663.2| PREDICTED: uncharacterized protein LOC100255253 [Vitis vinifera]

 Score = 1017 bits (2630), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/739 (69%), Positives = 593/739 (80%), Gaps = 15/739 (2%)

Query: 1   MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKSPRSPLSPQSP-RSDSLDLAIDGIVE 59
           MPG+ M+ +N D G   E NG    +K++    KSP+S L  QSP RS  ++  ++G+++
Sbjct: 1   MPGVVMEGVNED-GVANELNGSSTAFKENSASNKSPKSNLGLQSPPRSAGVEFPMNGVID 59

Query: 60  TSIEQLYLNICEMESSEQSPSRASYGSYGEESRIDSELRHLVGDIGEVEITKNVVVEK-N 118
           TSIEQLY N+CEM+SS+QSPSR S+GS GEESRIDSELRHLVG            VEK  
Sbjct: 60  TSIEQLYDNVCEMQSSDQSPSRVSFGSEGEESRIDSELRHLVGGEMREVEIMEEEVEKPG 119

Query: 119 EDSRSNGG----------EFTPKIVSESPDRRAVKKGKKKYSQLNISEASTKSSSQGKSS 168
           ++SRS+ G          +F     SE   +       KK SQL  SE S+KS+ + +S 
Sbjct: 120 DNSRSDSGSKKESLSAGKQFGKMDKSELSSKSVSPVHSKKNSQLE-SEVSSKSNPKSRSP 178

Query: 169 NERPPADKRYEKGRRKQN-NIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLK 227
             +PP+DKR EK  R  N  +   +KQR       K QNG +D   AGL NP LG FLLK
Sbjct: 179 QGKPPSDKRSEKNLRNPNAGVTPLKKQRNSPLGGVKLQNGTDDSSEAGLDNPNLGRFLLK 238

Query: 228 QTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIP 287
           Q R++ISSG+NPQKALELA RA KS+E CANGKPSLEQVMCLHV AAI+C+LGQYNEAIP
Sbjct: 239 QARDLISSGDNPQKALELALRATKSYEKCANGKPSLEQVMCLHVTAAIYCNLGQYNEAIP 298

Query: 288 VLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETD 347
           VLE S+EIPV+E+GQDHALAKFAG MQLGDTYAM+GQ+ENSILCYT GL +Q+QVLG+TD
Sbjct: 299 VLEHSIEIPVIEEGQDHALAKFAGHMQLGDTYAMVGQLENSILCYTTGLGVQKQVLGDTD 358

Query: 348 HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKG 407
            RVGETCRY+AEAHVQ+LQFDEAEK+CQMALDIHREN SPAS+EEAADRRLMGLIC+ KG
Sbjct: 359 PRVGETCRYLAEAHVQALQFDEAEKLCQMALDIHRENGSPASLEEAADRRLMGLICEMKG 418

Query: 408 DYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467
           D+EAALEH +LASM+M ANG E++VAS+DCSIGD YLSL+R+DEAIF+Y KALT FK+ K
Sbjct: 419 DHEAALEHLILASMAMVANGQEIEVASVDCSIGDTYLSLSRYDEAIFAYQKALTVFKTTK 478

Query: 468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAI 527
           GENHP+VASVFVRLADLY+K GKLR+SKSYCENAL+IYGKP  GIP EEIASGL D++AI
Sbjct: 479 GENHPSVASVFVRLADLYNKTGKLRESKSYCENALRIYGKPIPGIPPEEIASGLTDVSAI 538

Query: 528 YQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS 587
           Y+SM+ELEQA+ LL KALKIY   PGQQST AGIEAQMGVMYYM GNYSDSYN+ K+AIS
Sbjct: 539 YESMDELEQALSLLQKALKIYNDAPGQQSTTAGIEAQMGVMYYMLGNYSDSYNSFKNAIS 598

Query: 588 KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYS 647
           K R SGEKKSA FGIALNQMGLACVQRY INEAA+LFEEAR ILE+EYGPYH DTLGVYS
Sbjct: 599 KLRASGEKKSAFFGIALNQMGLACVQRYAINEAAELFEEARDILEQEYGPYHPDTLGVYS 658

Query: 648 NLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSR 707
           NLAGTYDA+GR+DDAIEILE+VVGMREEKLGTANPDV+DEKRRLAELLKEAG+VRNRK+R
Sbjct: 659 NLAGTYDAVGRLDDAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGKVRNRKAR 718

Query: 708 SLVTFLDSNSQNLKEDAIE 726
           SL T LD NSQ +  D I+
Sbjct: 719 SLETLLDVNSQTVNNDDIK 737

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511660|ref|XP_003524541.1| PREDICTED: uncharacterized protein LOC100781737 [Glycine max]

 Score = 1010 bits (2611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/730 (71%), Positives = 595/730 (81%), Gaps = 32/730 (4%)

Query: 1   MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKSPRSPLSPQSPRSDSLDLAIDGIVET 60
           MPGLAMD LN +S    E +G Y   K++F QQ SPRS LSP+S +SDS+DLAIDG+V+T
Sbjct: 1   MPGLAMDELNVNSAA-EEPSGSY---KENFAQQASPRSTLSPRSIQSDSIDLAIDGVVDT 56

Query: 61  SIEQLYLNICEMESSEQSPSRASYGSYGE--ESRIDSELRHLVGDIGEVEITKNVVVEKN 118
           SIEQLY N+CEM SS+ SPSRAS+ SY    ESRIDSEL HL GDI ++EITK VV E  
Sbjct: 57  SIEQLYHNVCEMRSSDHSPSRASFYSYDYDGESRIDSELGHLAGDIVDLEITKEVVTENK 116

Query: 119 EDSRSNGGEFTPKIVSESPDRRAVKKGKKKYSQLNISEASTKSSSQGKSSNERPPADKRY 178
           EDS +N  +    +VS+  D        K      + E S+K++             KR 
Sbjct: 117 EDSNANAEK--DAVVSKKDDNNQSSPNTK------VIEGSSKATP------------KRS 156

Query: 179 EKGRRKQNNIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGEN 238
           EKG RK N  +  R+ R+   L      G E+ +AAGL NP LGPFLLKQTR+MISSGEN
Sbjct: 157 EKGVRKANGTYRTRRNRRELGL-----KGIEERIAAGLDNPELGPFLLKQTRDMISSGEN 211

Query: 239 PQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL 298
           P+KAL+LA RA+KSFEICA+GKPSL+ VMCLHVLA I+C+LGQYNEAIPVLERS++IPVL
Sbjct: 212 PRKALDLAVRALKSFEICADGKPSLDMVMCLHVLATIYCNLGQYNEAIPVLERSIDIPVL 271

Query: 299 EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVA 358
           EDGQ+HALAKFAGCMQLGDTYAM+GQIENS+L Y AGLEIQ QVLGETD R GETCRYVA
Sbjct: 272 EDGQEHALAKFAGCMQLGDTYAMMGQIENSLLFYAAGLEIQGQVLGETDPRFGETCRYVA 331

Query: 359 EAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVL 418
           EAHVQ+LQFDEAEK+CQMALDIHR N +PASIEEAADRRLMGLICDSKGDYEAALEHYVL
Sbjct: 332 EAHVQALQFDEAEKLCQMALDIHRGNGAPASIEEAADRRLMGLICDSKGDYEAALEHYVL 391

Query: 419 ASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVF 478
           ASM++AAN HE DVAS+DCSIGDAYL+LAR+DEA+FSY KALT FKS KGENHP VASV+
Sbjct: 392 ASMAIAANDHEADVASVDCSIGDAYLALARYDEAVFSYQKALTVFKSTKGENHPTVASVY 451

Query: 479 VRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV 538
           VRLADLY+KIGK ++SKSYCENAL+I+GK   GIPSEEIASGLID+AAIYQSMN+LE+ +
Sbjct: 452 VRLADLYNKIGKFKESKSYCENALRIFGKIKPGIPSEEIASGLIDVAAIYQSMNDLEKGL 511

Query: 539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA 598
           KLL KALKIYG  PGQQST+AGIEAQMGVMYY+ GNYSDSYN  KSAI+KFR SGEKK+A
Sbjct: 512 KLLKKALKIYGNAPGQQSTVAGIEAQMGVMYYLLGNYSDSYNIFKSAIAKFRASGEKKTA 571

Query: 599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGR 658
           LFGIALNQMGLACVQ Y INEAADLFEEA+TILEKEY PYH DTLGVYSNLAGTYDAMGR
Sbjct: 572 LFGIALNQMGLACVQCYAINEAADLFEEAKTILEKEYAPYHPDTLGVYSNLAGTYDAMGR 631

Query: 659 IDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG-RVRNRKSRSLVTFLDSNS 717
           +DDAIEILEYVVGMREEKLGTANPDV+DE+RRL ELLKEAG     R  RSL T LD+NS
Sbjct: 632 VDDAIEILEYVVGMREEKLGTANPDVDDERRRLEELLKEAGRARNRRSRRSLETLLDTNS 691

Query: 718 QNLKEDAIEV 727
           Q +K + I V
Sbjct: 692 QLIKNNGITV 701

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087669|emb|CBI34925.3| unnamed protein product [Vitis vinifera]

 Score = 1004 bits (2595), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/728 (69%), Positives = 570/728 (78%), Gaps = 60/728 (8%)

Query: 1   MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKSPRSPLSPQSPRSDSLDLAIDGIVET 60
           MPGL MD L+ D    Y    G+           SP S LSPQS  S S+DL IDG++ T
Sbjct: 1   MPGLVMDGLHRDGMANYTPKEGF---------SNSPVSALSPQSHESGSIDLVIDGVINT 51

Query: 61  SIEQLYLNICEMESSEQSPSRASYGSYGEESRIDSELRHLVGDI-GEVEITKNVVVEKNE 119
           SIEQLY N+CEM+SS+QSPSR S+ SYG ESRIDSEL HLVG + G+ E+ K VV+ KN+
Sbjct: 52  SIEQLYHNVCEMQSSDQSPSRRSFISYGNESRIDSELYHLVGGLFGDAEVMKEVVMMKNK 111

Query: 120 DSRSNGGEFTPKIVSESPDRRAVKKGKKKYSQLNISEASTKSSSQGKSSNERPPADKRYE 179
               N G    +  + S DRR   K K ++       AS KS                  
Sbjct: 112 -GEDNEGNLVSEKENGSVDRRTGIKDKTQF-------ASEKS------------------ 145

Query: 180 KGRRKQNNIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGENP 239
                                   F NG ED L AGL NP LGPFLLKQTR++ISSGENP
Sbjct: 146 ------------------------FHNGTEDLLEAGLDNPDLGPFLLKQTRDLISSGENP 181

Query: 240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE 299
           QKALELA RA+KSFEI  NGKP+LE VMCLHV+AAI+CSLGQY+EAIP LERS+EIPV+E
Sbjct: 182 QKALELALRAVKSFEITGNGKPNLELVMCLHVIAAIYCSLGQYDEAIPSLERSIEIPVIE 241

Query: 300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAE 359
           +GQ+HALAKF GCMQLGDTYAM+GQIENSILCYTAGLEIQRQVLGE D R GETCRY+AE
Sbjct: 242 EGQNHALAKFVGCMQLGDTYAMIGQIENSILCYTAGLEIQRQVLGEMDSRFGETCRYLAE 301

Query: 360 AHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA 419
           AHVQ+LQFDEA+K+CQMAL+IH++N +PAS+EEAADRRLM LICDSKGDYEAALEHYVLA
Sbjct: 302 AHVQALQFDEAKKLCQMALNIHKKNGTPASLEEAADRRLMALICDSKGDYEAALEHYVLA 361

Query: 420 SMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV 479
            M+MAANG E+D ASIDCSIGD YLSLAR+DEA+FSY KALT FKS KGENHP VASVFV
Sbjct: 362 GMAMAANGQEIDAASIDCSIGDTYLSLARYDEAVFSYQKALTVFKSTKGENHPTVASVFV 421

Query: 480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVK 539
           RLADLY+K+GKLR+SKSYCENAL++YGKPN GIPSEEIASGLIDI+AI++SMNELEQA+K
Sbjct: 422 RLADLYNKVGKLRESKSYCENALRLYGKPNPGIPSEEIASGLIDISAIFESMNELEQALK 481

Query: 540 LLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL 599
           LL KALKIYG  PGQQSTIAGIEAQMGV+YYM GNYS SYN+   AISK R SGEKKSA 
Sbjct: 482 LLQKALKIYGNAPGQQSTIAGIEAQMGVIYYMMGNYSASYNSFSCAISKLRASGEKKSAF 541

Query: 600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI 659
            GIALNQMGLACVQRY I EAA+LFEEAR+ILEKEYGP H DTLG+YSNLAGTYDAMGR+
Sbjct: 542 LGIALNQMGLACVQRYAIGEAAELFEEARSILEKEYGPCHPDTLGIYSNLAGTYDAMGRL 601

Query: 660 DDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN 719
           +DAIEILEYVVG+REEKLGTANPDV+DEKRRL ELL EAGRVR+RK+RSL TFLD+N Q 
Sbjct: 602 EDAIEILEYVVGVREEKLGTANPDVDDEKRRLTELLTEAGRVRSRKTRSLQTFLDTNPQT 661

Query: 720 LKEDAIEV 727
              DAI+V
Sbjct: 662 TINDAIKV 669

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270342119|gb|ACZ74702.1| kinesin light chain-like protein [Phaseolus vulgaris]

 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/728 (70%), Positives = 595/728 (81%), Gaps = 19/728 (2%)

Query: 1   MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKSPRSPLSPQSPRSDSLDLAIDGIVET 60
           MPGLAMD  N +S    E +G Y  +KD F QQ SPRS LSP+S +SDS+DLAIDG+V+T
Sbjct: 1   MPGLAMDEFNVNSAA-EEPSGSYTPHKDYFAQQASPRSTLSPRSTQSDSIDLAIDGVVDT 59

Query: 61  SIEQLYLNICEMESSEQSPSRASYGSYGEESRIDSELRHLVGDIGEVEITKNVVVEKNED 120
           SIEQLY N+CEM SS+ SPSRAS+ SY  ESRIDSEL HLVGDI ++EITK VVV +N++
Sbjct: 60  SIEQLYHNVCEMRSSDHSPSRASFYSYDGESRIDSELGHLVGDIVDLEITKEVVVTENKE 119

Query: 121 SRSNGGEFTPKIVSESPDRRAVKKGKKKYSQLNISEASTKSSSQGKSSNERPPADKRYEK 180
                 +F       +P++  V +GK+  +  N   + T    +G S     P  ++ EK
Sbjct: 120 ------DFNANASGTTPEKGVVSRGKEPSN--NSQSSPTTRVIEGSSK----PTPRKNEK 167

Query: 181 GRRKQNNIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQ 240
           G RK N ++  RK R+   +        E+ +AAGL NP LGPFLLKQTR+MISSGENP+
Sbjct: 168 GVRKANGVYHIRKHRRNPGM-----KEIEERIAAGLDNPDLGPFLLKQTRDMISSGENPR 222

Query: 241 KALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLED 300
           KA +LA RA+KSFEICA+GKP+L+ VMCLHVLA I+ +LGQYNEAIP+LERS++IPVLED
Sbjct: 223 KARDLALRALKSFEICADGKPNLDMVMCLHVLATIYSNLGQYNEAIPILERSIDIPVLED 282

Query: 301 GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEA 360
           GQDHALAKFAGCMQLGDTYAM+GQIENS+L YTAGLEIQ QVLGETD R GETCRYVAEA
Sbjct: 283 GQDHALAKFAGCMQLGDTYAMMGQIENSLLFYTAGLEIQGQVLGETDPRFGETCRYVAEA 342

Query: 361 HVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLAS 420
           HVQ+LQFD+AEK+CQ+ALDIHR N  PASIEEAADRRLMGLICDSKGDYEAALEHYVLAS
Sbjct: 343 HVQALQFDDAEKLCQVALDIHRGNGEPASIEEAADRRLMGLICDSKGDYEAALEHYVLAS 402

Query: 421 MSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR 480
           M+MAANGHE DVAS+DCSIGDAYL+L+R+DEA+FSY KALT FKS KGENHP VASV+VR
Sbjct: 403 MAMAANGHEADVASVDCSIGDAYLALSRYDEAVFSYQKALTVFKSTKGENHPTVASVYVR 462

Query: 481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKL 540
           LADLY+KIGK +++KSYCENAL+I+GK   GI  EEIASGLID+AAIYQSMN+L++ +KL
Sbjct: 463 LADLYNKIGKFKEAKSYCENALRIFGKIKPGISLEEIASGLIDVAAIYQSMNDLQKGLKL 522

Query: 541 LNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALF 600
           L KALKIY   PGQQST+AGIEAQMGVMYYM GN+SDSYN  KSAI+KFR SGEKK+ALF
Sbjct: 523 LKKALKIYVNAPGQQSTVAGIEAQMGVMYYMLGNFSDSYNIFKSAIAKFRASGEKKNALF 582

Query: 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRID 660
           GIALNQMGLACVQ Y INEAADLFEEA+TILEKEYGPYH DTLGV SNLAGTYDAMGR+D
Sbjct: 583 GIALNQMGLACVQCYAINEAADLFEEAKTILEKEYGPYHPDTLGVCSNLAGTYDAMGRVD 642

Query: 661 DAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG-RVRNRKSRSLVTFLDSNSQN 719
           DAIEILEYVVGMREEKLGTANPDV+DEKRRL ELLKEAG     R  RSL T L++NSQ 
Sbjct: 643 DAIEILEYVVGMREEKLGTANPDVDDEKRRLEELLKEAGRARNRRSRRSLETLLETNSQI 702

Query: 720 LKEDAIEV 727
           +K   I+V
Sbjct: 703 IKNSGIKV 710

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571352|ref|XP_003553842.1| PREDICTED: uncharacterized protein LOC100786477 [Glycine max]

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/731 (71%), Positives = 593/731 (81%), Gaps = 36/731 (4%)

Query: 1   MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKSPRSPLSPQSPRSDSLDLAIDGIVET 60
           MPGLAMD  N ++    E +G Y   K++F QQ SPRS LSP+S +SDS+DLAIDG+V+T
Sbjct: 1   MPGLAMDEFNVNNAA-EEPSGSY---KENFAQQASPRSTLSPRSIQSDSIDLAIDGVVDT 56

Query: 61  SIEQLYLNICEMESSEQSPSRASYGSYGE--ESRIDSELRHLVGDIGEVEITKNVVVEKN 118
           SIEQLY N+CEM SS+ SPSRAS+ SY    ESRIDSEL HL GDI ++EITK VV E  
Sbjct: 57  SIEQLYHNVCEMRSSDHSPSRASFYSYDYDGESRIDSELGHLAGDIVDLEITKEVVTENK 116

Query: 119 EDSRSNGGEFTPKIVSESPDRRAVKKGKKKYSQLNISEASTKSSSQGKSSNERPPADKRY 178
           ED   N    TP+      D    KK +K      + E S+K++             KR 
Sbjct: 117 EDYNGNASGKTPE-----KDVVVSKKDEK------VIEGSSKATP------------KRS 153

Query: 179 EKGRRKQNNI-FSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGE 237
           EKG +K N+  +   K R+   L A      E+ +AAGL NP LGPFLLKQTR+MISSGE
Sbjct: 154 EKGVKKANSANYRTGKHRRHLGLKA-----IEERIAAGLDNPDLGPFLLKQTRDMISSGE 208

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
           NP+K L+ A RA+KSFEICA+GKPSL+ VMCLHVLA I+C+LGQYNEAIPVLERS++IPV
Sbjct: 209 NPRKTLDFALRALKSFEICADGKPSLDMVMCLHVLATIYCNLGQYNEAIPVLERSIDIPV 268

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357
           LEDGQDHALAKFAGCMQLGDTYAM+GQIENS+L YTAGLEIQ QVLGETD R GETCRYV
Sbjct: 269 LEDGQDHALAKFAGCMQLGDTYAMMGQIENSLLFYTAGLEIQGQVLGETDPRFGETCRYV 328

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417
           AEAHVQ+LQFDEAEK+CQMALDIHR N +PASIEEAADRRLMGLICDSKGDYEAALEHYV
Sbjct: 329 AEAHVQALQFDEAEKLCQMALDIHRGNGAPASIEEAADRRLMGLICDSKGDYEAALEHYV 388

Query: 418 LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASV 477
           LASM+MAAN HE+DVAS+DCSIGDAYL+LAR+DEA+FSY KALT FKS KGENHP VASV
Sbjct: 389 LASMAMAANDHEVDVASVDCSIGDAYLALARYDEAVFSYQKALTVFKSTKGENHPTVASV 448

Query: 478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537
           +VRLADLY+KIGK ++SKSYCENAL+I+GK   G+PSEEIASGLID+AAIYQSMN+LE+ 
Sbjct: 449 YVRLADLYNKIGKFKESKSYCENALRIFGKIKPGVPSEEIASGLIDVAAIYQSMNDLEKG 508

Query: 538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS 597
           +KLL KALKIYG  PGQQST+AGIEAQMGVMYYM GNYSDSYN  KSAI+KFR SGEKK+
Sbjct: 509 LKLLKKALKIYGNAPGQQSTVAGIEAQMGVMYYMLGNYSDSYNIFKSAIAKFRASGEKKT 568

Query: 598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG 657
           ALFGIALNQMGLACVQ Y INEAADLFEEARTILEKEYGPYH DTLGVYSNLAGTYDAMG
Sbjct: 569 ALFGIALNQMGLACVQCYAINEAADLFEEARTILEKEYGPYHPDTLGVYSNLAGTYDAMG 628

Query: 658 RIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE-AGRVRNRKSRSLVTFLDSN 716
           R+DDAIEILEYVVGMREEKLGTANPDV+DEKRRL ELLKE       R  RSL T LD++
Sbjct: 629 RVDDAIEILEYVVGMREEKLGTANPDVDDEKRRLEELLKESGRARNRRSRRSLETLLDTH 688

Query: 717 SQNLKEDAIEV 727
           SQ +K + I+V
Sbjct: 689 SQLVKNNGIKV 699

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540685|ref|XP_002511407.1| kinesin light chain, putative [Ricinus communis] gi|223550522|gb|EEF52009.1| kinesin light chain, putative [Ricinus communis]

 Score =  986 bits (2549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/767 (66%), Positives = 599/767 (78%), Gaps = 41/767 (5%)

Query: 1   MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKSPRSPLSPQSPRSDSLDLAIDGI--- 57
           MPG+ MD  N +   V E N   +  K++ +  KSPRS LSPQSP S+S+DL   G+   
Sbjct: 1   MPGIVMDG-NNEEAIVNEMNDNSVPIKENAMSNKSPRSTLSPQSPCSNSVDLPAGGVPVG 59

Query: 58  ----------------------VETSIEQLYLNICEMESSEQSPSRASYGSYGEESRIDS 95
                                 V+TSIEQLY N+C+M+SS+ SPSR S+GS GEESRIDS
Sbjct: 60  ELTVDEVVVNEVAADETSVHGGVDTSIEQLYENVCDMQSSDLSPSRHSFGSDGEESRIDS 119

Query: 96  ELRHLVG-DIGEVEITKNVVVEKNE-DSRSNGGEFTP------------KIVSESPDRRA 141
           ELRHLVG ++ EVEI +   V+K E D+ SN                  K  S S +  +
Sbjct: 120 ELRHLVGGEMREVEIMQEEEVDKPENDTHSNSSSKKGSSSGSKKSGKLNKNQSASSNSIS 179

Query: 142 VKKGKKKYSQLNISEASTKSSSQGKSSNERPPADKRYEKGRRKQNN-IFSARKQRKFASL 200
               KK    +  SEAS+K S + KS  E+PP DKR +K  +K N  + S +K R     
Sbjct: 180 SNTSKKDSHIILDSEASSKLSPKSKSPPEKPPIDKRNDKNFKKANGGVKSTKKWRNSPLG 239

Query: 201 IAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGK 260
             K QNG ED   +GLGNP LG FLLKQ+R++ISSG+NPQKALELA RA KSFEICANGK
Sbjct: 240 GKKLQNGVEDSSDSGLGNPDLGRFLLKQSRDLISSGDNPQKALELALRASKSFEICANGK 299

Query: 261 PSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYA 320
           PSLE VM LHV+AAI+CS+GQYNEAIPVLE+S+EIPV+E+GQ+HALAKFAG MQLGDTYA
Sbjct: 300 PSLELVMSLHVVAAIYCSVGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYA 359

Query: 321 MLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDI 380
           MLGQ+ENS  CYT GLE+Q+QVLGETD RVGETCRY+AEAHVQ+LQFD+A+++CQMALDI
Sbjct: 360 MLGQLENSTKCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFDDAKRLCQMALDI 419

Query: 381 HRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIG 440
           HREN +PAS EEAADRRLMGLIC++KGD+EAALEH VLASM+M ANG E +VAS+DCSIG
Sbjct: 420 HRENGAPASPEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQEAEVASVDCSIG 479

Query: 441 DAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCEN 500
           D YLSL+R+DEA+F+Y KALTAFK+ KGENHPAVA+VFVRLADLY+K GKLRDSKSYCEN
Sbjct: 480 DTYLSLSRYDEAVFAYQKALTAFKTTKGENHPAVAAVFVRLADLYNKTGKLRDSKSYCEN 539

Query: 501 ALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG 560
           AL+IY KP  GIP EEIASGL D++AIY+SMNELEQA+KLL KALKIY   PGQQSTIAG
Sbjct: 540 ALRIYEKPAPGIPPEEIASGLTDVSAIYESMNELEQAIKLLQKALKIYNDAPGQQSTIAG 599

Query: 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEA 620
           IEAQMGVMYYM GNYS+SYNT K+A+SK R SGE+KSA FGIALNQMGLACVQRY+INEA
Sbjct: 600 IEAQMGVMYYMLGNYSESYNTFKNAVSKLRASGERKSAFFGIALNQMGLACVQRYSINEA 659

Query: 621 ADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA 680
           A+LFEEA++ILE+E GPYH DTLGVYSNLAGTYDAMGR+DDAIEILE VVGMREEKLGTA
Sbjct: 660 AELFEEAKSILEQECGPYHPDTLGVYSNLAGTYDAMGRLDDAIEILELVVGMREEKLGTA 719

Query: 681 NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKEDAIEV 727
           NPDV+DEK+RLAELLKEAGRVR+RK RSL   LDSNS ++ +  I V
Sbjct: 720 NPDVDDEKKRLAELLKEAGRVRSRKGRSLENLLDSNSHSIDKAGIPV 766

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477406|ref|XP_004155014.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101208453 [Cucumis sativus]

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/739 (65%), Positives = 590/739 (79%), Gaps = 15/739 (2%)

Query: 1   MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKSPRSPLSPQSPRSDSLDLAIDGIVET 60
           MPG+ MD +N +   V + NG  +  ++S+ + KSPRS LS QSP S  +D  +DG+V+T
Sbjct: 1   MPGIVMDEIN-EERAVNKHNGSSIHIEESY-ENKSPRSGLSLQSPGSVHVDFPVDGLVDT 58

Query: 61  SIEQLYLNICEMESSEQSPSRASYGSYGEESRIDSELRHLVG-DIGEVEITKNV--VVEK 117
           SIE+LY N+C+M+SS+QSPSR S+GS GEESRIDSEL HLVG ++ EVEI K    + EK
Sbjct: 59  SIEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEEDIAEK 118

Query: 118 NED-------SRSNGGEFTPKIVSESPDRRAVKKGKKK-YSQLNISEASTKSSSQGKSSN 169
           +E        + S   +   K  +  P       G+K  + QL+  E S KSS +GK   
Sbjct: 119 HEHDFPVDSMNHSPSADKKEKAENSQPGSSKRPSGRKSPHLQLD-HETSPKSSPRGKGLM 177

Query: 170 ERPPADKRYEKGRRKQNNIFSARKQRKFASLI-AKFQNGAEDPLAAGLGNPALGPFLLKQ 228
           ++PP  ++ EK  +K +   +  K++K + L  +K QNG+ED   + L NP LGPFLLKQ
Sbjct: 178 DKPPISRKNEKNSKKXSPGAAQLKKQKDSPLRGSKMQNGSEDFEESMLDNPDLGPFLLKQ 237

Query: 229 TREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPV 288
            R ++SSGEN QKAL +A RA K+FE+ ANGKP+LE VMCLHV AAI+CSLGQY+EAIP+
Sbjct: 238 ARNLVSSGENLQKALLIALRAAKAFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAIPL 297

Query: 289 LERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH 348
           LE S+EIP +E+G +HALAKFAG MQLGDTYAMLGQ+ENS++CYT GLE+Q+QVLGETD 
Sbjct: 298 LEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGETDP 357

Query: 349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGD 408
           RVGET RY+AEAHVQ+L+FDEAEK CQMALDIH++N  PAS+EEA DRRLMGLIC++KGD
Sbjct: 358 RVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAGDRRLMGLICETKGD 417

Query: 409 YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG 468
           +EAALEH VLASM+M ANG E DVA++DCSIGD+YLSL+R+DEA+F+Y KALT FK+ KG
Sbjct: 418 HEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKG 477

Query: 469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIY 528
           ENHPAV SVFVRLADLY+K GK+R+S SYCENAL+IY KP  GIP EEIASGL DIAAIY
Sbjct: 478 ENHPAVGSVFVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAAIY 537

Query: 529 QSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588
           +SMNE+EQAVKLL+KALKIY   PGQQ+TIAGIEAQMGV+YYM GNYS+SYN+  +AI K
Sbjct: 538 ESMNEVEQAVKLLHKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYNSFNNAIPK 597

Query: 589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSN 648
            R SGEKKSA FGIALNQMGL CVQ+Y INEA +LFEEA++ILE+EYGPYH DTLGVYSN
Sbjct: 598 LRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVYSN 657

Query: 649 LAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRS 708
           LAGTYDA+GR+DDAIEILEYVVGMREEKLGTANPDV+DEKRRL+ELLKEAGRVR+RK+RS
Sbjct: 658 LAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARS 717

Query: 709 LVTFLDSNSQNLKEDAIEV 727
           L T LD+N+  +    I+V
Sbjct: 718 LETLLDANAHTVNSKGIQV 736

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440678|ref|XP_004138111.1| PREDICTED: uncharacterized protein LOC101208453 [Cucumis sativus]

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/744 (65%), Positives = 589/744 (79%), Gaps = 25/744 (3%)

Query: 1   MPGLAMDALNGDSGGVYEANGGYMGYKDSFVQQKSPRSPLSPQSPRSDSLDLAIDGIVET 60
           MPG+ MD +N +   V + NG  +  ++S+   KSPRS LS QSP S  +D  +DG+V+T
Sbjct: 1   MPGIVMDEIN-EERAVNKHNGSSIHIEESY-GNKSPRSGLSLQSPGSVHVDFPVDGLVDT 58

Query: 61  SIEQLYLNICEMESSEQSPSRASYGSYGEESRIDSELRHLVG-DIGEVEITKNVVVEKNE 119
           SIE+LY N+C+M+SS+QSPSR S+GS GEESRIDSEL HLVG ++ EVEI K    E+ +
Sbjct: 59  SIEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIK----EEED 114

Query: 120 DSRSNGGEFTPKIVSESPDRRAVKKGKKKYSQLNIS---------------EASTKSSSQ 164
            +  +  +F    ++ SP   A KK K + SQ   S               E S KSS +
Sbjct: 115 IAEKHEHDFPVDSMNHSPS--ADKKEKAENSQPGSSKRPSGRKSPHLQLEHETSPKSSPR 172

Query: 165 GKSSNERPPADKRYEKGRRKQNNIFSARKQRKFASLI-AKFQNGAEDPLAAGLGNPALGP 223
           GK   ++PP  ++ EK  +K +   +  K++K + L  +K QNG+ED     L NP LGP
Sbjct: 173 GKGLMDKPPISRKNEKNSKKNSPGAAQLKKQKDSPLRGSKMQNGSEDFEELMLDNPDLGP 232

Query: 224 FLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYN 283
           FLLKQ R ++SSGEN QKAL +A RA K+FE+ ANGKP+LE VMCLHV AAI+CSLGQY+
Sbjct: 233 FLLKQARNLVSSGENLQKALLIALRAAKAFELSANGKPNLELVMCLHVTAAIYCSLGQYS 292

Query: 284 EAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVL 343
           EAIP+LE S+EIP +E+G +HALAKFAG MQLGDTYAMLGQ+ENS++CYT GLE+Q+QVL
Sbjct: 293 EAIPLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVL 352

Query: 344 GETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLIC 403
           GETD RVGET RY+AEAHVQ+L+FDEAEK CQMALDIH++N  PAS+EEA DRRLMGLIC
Sbjct: 353 GETDPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAGDRRLMGLIC 412

Query: 404 DSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAF 463
           ++KGD+EAALEH VLASM+M ANG E DVA++DCSIGD+YLSL+R+DEA+F+Y KALT F
Sbjct: 413 ETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVF 472

Query: 464 KSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLID 523
           K+ KGENHPAV SVFVRLADLY+K GK+R+S SYCENAL+IY KP  GIP EEIASGL D
Sbjct: 473 KTTKGENHPAVGSVFVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTD 532

Query: 524 IAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLK 583
           IAAIY+SMNE+EQAVKLL+KALKIY   PGQQ+TIAGIEAQMGV+YYM GNYS+SYN+  
Sbjct: 533 IAAIYESMNEVEQAVKLLHKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYNSFN 592

Query: 584 SAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTL 643
           +AI K R SGEKKSA FGIALNQMGL CVQ+Y INEA +LFEEA++ILE+EYGPYH DTL
Sbjct: 593 NAIPKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTL 652

Query: 644 GVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRN 703
           GVYSNLAGTYDA+GR+DDAIEILEYVVGMREEKLGTANPDV+DEKRRL+ELLKEAGRVR+
Sbjct: 653 GVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRS 712

Query: 704 RKSRSLVTFLDSNSQNLKEDAIEV 727
           RK+RSL T LD+N+  +    I+V
Sbjct: 713 RKARSLETLLDANAHTVNSKGIQV 736

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552570|ref|XP_002517328.1| kinesin light chain, putative [Ricinus communis] gi|223543339|gb|EEF44870.1| kinesin light chain, putative [Ricinus communis]

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/615 (77%), Positives = 535/615 (86%), Gaps = 11/615 (1%)

Query: 123 SNGGEFTPKIVSESPDRRAVKKGKKKYSQLNIS--------EASTKSSSQGKSSNERPPA 174
           +N G+FTP   ++S D+ +  K + + + L           +AS KSS + +S  ++PP+
Sbjct: 9   NNVGDFTPTKDNDSTDQSSANKDRSRAASLKKQLFRLQSDLQASVKSSPKSRSLCDKPPS 68

Query: 175 DKRYEKGRRKQNNIFSARKQ-RKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTREMI 233
           D+R +K  RK+N   + +KQ R FAS  AKFQN  EDPL +GL NP LGPFLLKQT++MI
Sbjct: 69  DRRSDKNMRKRNAGLNMKKQQRNFASAGAKFQN--EDPLESGLENPDLGPFLLKQTKDMI 126

Query: 234 SSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSV 293
           SSGENPQK LE A RA KSFE+CANGKP+LE VM LHVLAA++CSLGQYNEAIPVLERS+
Sbjct: 127 SSGENPQKTLEFALRATKSFEVCANGKPNLELVMSLHVLAALYCSLGQYNEAIPVLERSI 186

Query: 294 EIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGET 353
           EIPV+EDGQ+HALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE DHRVGET
Sbjct: 187 EIPVIEDGQNHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGEMDHRVGET 246

Query: 354 CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAAL 413
           CRYVAEAHVQ+LQFDEAE +CQ+AL+IHR  + PAS+EEAADRRLMGLIC++KGDYEAAL
Sbjct: 247 CRYVAEAHVQALQFDEAENLCQIALNIHRHKSGPASLEEAADRRLMGLICEAKGDYEAAL 306

Query: 414 EHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPA 473
           EHYVLASMSMAANG ++DVASIDCSIGDAYLSLAR+DEAIF+Y K LT FKS+KGENHPA
Sbjct: 307 EHYVLASMSMAANGLDIDVASIDCSIGDAYLSLARYDEAIFAYQKGLTVFKSSKGENHPA 366

Query: 474 VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE 533
           VASVFVRLADLY++IGK RDSKSYCENAL+IY K N GIP+EEIASGLID++AIYQSMNE
Sbjct: 367 VASVFVRLADLYNRIGKFRDSKSYCENALRIYEKSNPGIPAEEIASGLIDVSAIYQSMNE 426

Query: 534 LEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG 593
             QA+KLL KALKIYGKTPGQQSTIAGIEAQMGVMYYM GNY+DSYNT KSA+SKFR SG
Sbjct: 427 FNQALKLLKKALKIYGKTPGQQSTIAGIEAQMGVMYYMMGNYADSYNTFKSAVSKFRASG 486

Query: 594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY 653
           EKKSALFGIALNQMGLACVQRY INEAADLFEEAR+ILEKEYGP H DTLGVYSNLAGTY
Sbjct: 487 EKKSALFGIALNQMGLACVQRYAINEAADLFEEARSILEKEYGPCHPDTLGVYSNLAGTY 546

Query: 654 DAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFL 713
           DAMGR+DDAIEIL+YVVGMREEKLGTANPDV+DEKRRL ELLK+AG+VRNRKSRSLVT L
Sbjct: 547 DAMGRLDDAIEILDYVVGMREEKLGTANPDVDDEKRRLGELLKDAGKVRNRKSRSLVTLL 606

Query: 714 DSNSQNLKEDAIEVS 728
           D   Q +  DAIEVS
Sbjct: 607 DRELQIIPGDAIEVS 621

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	728
TAIR|locus:2086834	663	KLCR2 "kinesin light chain-rel	0.688	0.755	0.740	5.8e-201
TAIR|locus:2015959	650	KLCR3 "AT1G27500" [Arabidopsis	0.740	0.829	0.644	1.5e-184
TAIR|locus:2123411	609	KLCR1 "kinesin light chain-rel	0.703	0.840	0.628	3.8e-172
TAIR|locus:2042506	617	AT2G31240 "AT2G31240" [Arabido	0.662	0.781	0.286	4.5e-44
ASPGD|ASPL0000018313	1288	AN3547 [Emericella nidulans (t	0.589	0.333	0.220	4.5e-19
UNIPROTKB|Q5LU72	374	SPO1186 "TPR domain protein" [	0.380	0.740	0.255	4.2e-15
TIGR_CMR|SPO_1186	374	SPO_1186 "TPR domain protein"	0.380	0.740	0.255	4.2e-15
UNIPROTKB|Q21592	516	klc-1 "Protein KLC-1, isoform	0.326	0.461	0.263	2.4e-11
WB|WBGene00002214	536	klc-1 [Caenorhabditis elegans	0.326	0.444	0.263	2.5e-11
WB|WBGene00002215	540	klc-2 [Caenorhabditis elegans	0.537	0.724	0.208	2.6e-11

TAIR|locus:2086834 KLCR2 "kinesin light chain-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1945 (689.7 bits), Expect = 5.8e-201, P = 5.8e-201
 Identities = 374/505 (74%), Positives = 438/505 (86%)

Query:   218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSL--EQVMCLHVLAAI 275
             +P LG  LLKQ RE++SSGEN  KAL+LA RA+K FE C  G+  L    VM LH+LAAI
Sbjct:   150 SPELGVVLLKQARELVSSGENLNKALDLALRAVKVFEKCGEGEKQLGLNLVMSLHILAAI 209

Query:   276 HCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAG 335
             +  LG+YN+A+PVLERS+EIP++EDG+DHALAKFAGCMQLGD Y ++GQ+ENSI+ YTAG
Sbjct:   210 YAGLGRYNDAVPVLERSIEIPMIEDGEDHALAKFAGCMQLGDMYGLMGQVENSIMLYTAG 269

Query:   336 LEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN--TSPASIEEA 393
             LEIQRQVLGE+D RVGETCRY+AEAHVQ++QF+EA ++CQMALDIH+EN   + ASIEEA
Sbjct:   270 LEIQRQVLGESDARVGETCRYLAEAHVQAMQFEEASRLCQMALDIHKENGAAATASIEEA 329

Query:   394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAI 453
             ADR+LMGLICD+KGDYE ALEHYVLASM+M++  H  DVA++DCSIGDAY+SLARFDEAI
Sbjct:   330 ADRKLMGLICDAKGDYEVALEHYVLASMAMSSQNHREDVAAVDCSIGDAYMSLARFDEAI 389

Query:   454 FSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIP 513
             F+Y KAL  FK  KGE H +VA V+VRLADLY+KIGK RDSKSYCENALKIY KP  G P
Sbjct:   390 FAYQKALAVFKQGKGETHSSVALVYVRLADLYNKIGKTRDSKSYCENALKIYLKPTPGTP 449

Query:   514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG 573
              EE+A+G I+I+AIYQSMNEL+QA+KLL +ALKIY   PGQQ+TIAGIEAQMGV+ YM G
Sbjct:   450 MEEVATGFIEISAIYQSMNELDQALKLLRRALKIYANAPGQQNTIAGIEAQMGVVTYMMG 509

Query:   574 NYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK 633
             NYS+SY+  KSAISKFR SGEKK+ALFGIALNQMGLACVQRY INEAADLFEEA+TILEK
Sbjct:   510 NYSESYDIFKSAISKFRNSGEKKTALFGIALNQMGLACVQRYAINEAADLFEEAKTILEK 569

Query:   634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAE 693
             E GPYH DTL VYSNLAGTYDAMGR+DDAIEILEYVVG REEKLGTANP+VEDEK+RLA 
Sbjct:   570 ECGPYHPDTLAVYSNLAGTYDAMGRLDDAIEILEYVVGTREEKLGTANPEVEDEKQRLAA 629

Query:   694 LLKEAGRVRNRKSRSLVTFLDSNSQ 718
             LLKEAGR R++++R+L+T LD+N +
Sbjct:   630 LLKEAGRGRSKRNRALLTLLDNNPE 654

GO:0005886 "plasma membrane" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IEP

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2015959 KLCR3 "AT1G27500" [Arabidopsis thaliana (taxid:3702)]

 Score = 1790 (635.2 bits), Expect = 1.5e-184, P = 1.5e-184
 Identities = 353/548 (64%), Positives = 436/548 (79%)

Query:   173 PADKRYEKGRRK--QNNI-FSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQT 229
             P D   + G++   ++N+     +++K      K QNG E+P +    N  L  FLL Q 
Sbjct:   100 PRDMEKQTGKKNVTKSNVGVGGMRKKKVGG--TKLQNGNEEPSSE---NVELARFLLNQA 154

Query:   230 REMISSGENPQKALELAKRAMKSFEICA-NGKPSLEQVMCLHVLAAIHCSLGQYNEAIPV 288
             R ++SSG++  KALEL  RA K FE  A NGKP LE +MCLHV AA+HC L +YNEAIPV
Sbjct:   155 RNLVSSGDSTHKALELTHRAAKLFEASAENGKPCLEWIMCLHVTAAVHCKLKEYNEAIPV 214

Query:   289 LERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH 348
             L+RSVEIPV+E+G++HALAKFAG MQLGDTYAM+GQ+E+SI CYT GL IQ++VLGE D 
Sbjct:   215 LQRSVEIPVVEEGEEHALAKFAGLMQLGDTYAMVGQLESSISCYTEGLNIQKKVLGENDP 274

Query:   349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGD 408
             RVGETCRY+AEA VQ+L+FDEA+++C+ AL IHRE+  P SI EAADRRLMGLIC++KGD
Sbjct:   275 RVGETCRYLAEALVQALRFDEAQQVCETALSIHRESGLPGSIAEAADRRLMGLICETKGD 334

Query:   409 YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG 468
             +E ALEH VLASM+MAANG E +VA +D SIGD+YLSL+RFDEAI +Y K+LTA K+AKG
Sbjct:   335 HENALEHLVLASMAMAANGQESEVAFVDTSIGDSYLSLSRFDEAICAYQKSLTALKTAKG 394

Query:   469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIY 528
             ENHPAV SV++RLADLY++ GK+R++KSYCENAL+IY   N  I  EEIASGL DI+ I 
Sbjct:   395 ENHPAVGSVYIRLADLYNRTGKVREAKSYCENALRIYESHNLEISPEEIASGLTDISVIC 454

Query:   529 QSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588
             +SMNE+EQA+ LL KALKIY  +PGQ+  IAGIEAQMGV+YYM G Y +SYNT KSAISK
Sbjct:   455 ESMNEVEQAITLLQKALKIYADSPGQKIMIAGIEAQMGVLYYMMGKYMESYNTFKSAISK 514

Query:   589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSN 648
              R +G+K+S  FGIALNQMGLAC+Q   I EA +LFEEA+ ILE+E GPYH +TLG+YSN
Sbjct:   515 LRATGKKQSTFFGIALNQMGLACIQLDAIEEAVELFEEAKCILEQECGPYHPETLGLYSN 574

Query:   649 LAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRS 708
             LAG YDA+GR+DDAI++L +VVG+REEKLGTANP  EDEKRRLA+LLKEAG V  RK++S
Sbjct:   575 LAGAYDAIGRLDDAIKLLGHVVGVREEKLGTANPVTEDEKRRLAQLLKEAGNVTGRKAKS 634

Query:   709 LVTFLDSN 716
             L T +DS+
Sbjct:   635 LKTLIDSD 642

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2123411 KLCR1 "kinesin light chain-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1673 (594.0 bits), Expect = 3.8e-172, P = 3.8e-172
 Identities = 331/527 (62%), Positives = 415/527 (78%)

Query:   209 EDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEIC-----------A 257
             +DP    L NP LGPFLLK  R+ I+SGE P KAL+ A RA KSFE C           +
Sbjct:    75 DDP---SLDNPDLGPFLLKLARDAIASGEGPNKALDYAIRATKSFERCCAAVAPPIPGGS 131

Query:   258 NGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD 317
             +G P L+  M LHVLAAI+CSLG+++EA+P LER++++P    G DH+LA F+G MQLGD
Sbjct:   132 DGGPVLDLAMSLHVLAAIYCSLGRFDEAVPPLERAIQVPDPTRGPDHSLAAFSGHMQLGD 191

Query:   318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA 377
             T +MLGQI+ SI CY  GL+IQ Q LG+TD RVGETCRY+AEA+VQ++QF++AE++C+  
Sbjct:   192 TLSMLGQIDRSIACYEEGLKIQIQTLGDTDPRVGETCRYLAEAYVQAMQFNKAEELCKKT 251

Query:   378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDC 437
             L+IHR ++ PAS+EEAADRRLM +IC++KGDYE ALEH VLASM+M A+G E +VASID 
Sbjct:   252 LEIHRAHSEPASLEEAADRRLMAIICEAKGDYENALEHLVLASMAMIASGQESEVASIDV 311

Query:   438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
             SIG+ Y+SL RFDEA+FSY KALT FK++KGE HP VASVFVRLA+LYH+ GKLR+SKSY
Sbjct:   312 SIGNIYMSLCRFDEAVFSYQKALTVFKASKGETHPTVASVFVRLAELYHRTGKLRESKSY 371

Query:   498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST 557
             CENAL+IY KP  G   EEIA GL +I+AIY+S++E E+A+KLL K++K+    PGQQS 
Sbjct:   372 CENALRIYNKPVPGTTVEEIAGGLTEISAIYESVDEPEEALKLLQKSMKLLEDKPGQQSA 431

Query:   558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI 617
             IAG+EA+MGVMYY  G Y D+ N  +SA++K R +GEK SA FG+ LNQMGLACVQ + I
Sbjct:   432 IAGLEARMGVMYYTVGRYEDARNAFESAVTKLRAAGEK-SAFFGVVLNQMGLACVQLFKI 490

Query:   618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKL 677
             +EA +LFEEAR ILE+E GP   DTLGVYSNLA TYDAMGRI+DAIEILE V+ +REEKL
Sbjct:   491 DEAGELFEEARGILEQERGPCDQDTLGVYSNLAATYDAMGRIEDAIEILEQVLKLREEKL 550

Query:   678 GTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKEDA 724
             GTANPD EDEK+RLAELLKEAGR RN K++SL   +D N++  K+++
Sbjct:   551 GTANPDFEDEKKRLAELLKEAGRSRNYKAKSLQNLIDPNARPPKKES 597

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2042506 AT2G31240 "AT2G31240" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 4.5e-44, P = 4.5e-44
 Identities = 142/496 (28%), Positives = 237/496 (47%)

Query:   217 GNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIH 276
             GN  LG   LK    +   GE+P+K L  A +A+KSF+   N KP+L   M   ++ + +
Sbjct:   114 GNE-LGLSALKLGLHLDREGEDPEKVLSYADKALKSFDGDGN-KPNLLVAMASQLMGSAN 171

Query:   277 CSLGQYNEAIPVLERSVEIPV-LE-DG----QDHALAKFAGCMQLGDTYAMLGQIENSIL 330
               L ++++++  L R+  I V LE DG    +D      A  ++L +    +G+ E +I 
Sbjct:   172 YGLKRFSDSLGYLNRANRILVKLEADGDCVVEDVRPVLHAVQLELANVKNAMGRREEAIE 231

Query:   331 CYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI 390
                  LEI+     E    +G   R +A+A+V  L F+EA      AL+IH++     S 
Sbjct:   232 NLKKSLEIKEMTFDEDSKEMGVANRSLADAYVAVLNFNEALPYALKALEIHKKELGNNSA 291

Query:   391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD 450
             E A DRRL+G+I      ++ ALE   L+   +   G +L++   +    +  ++L +++
Sbjct:   292 EVAQDRRLLGVIYSGLEQHDKALEQNRLSQRVLKNWGMKLELIRAEIDAANMKVALGKYE 351

Query:   451 EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510
             EAI      L +      ++    A VF+ ++       K  +SK   E A +I  K   
Sbjct:   352 EAI----DILKSVVQQTDKDSEMRAMVFISMSKALVNQQKFAESKRCLEFACEILEKKET 407

Query:   511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYY 570
              +P E +A    ++A  Y+SMNE E A+ LL K L I  K P +Q +   + A++G +  
Sbjct:   408 ALPVE-VAEAYSEVAMQYESMNEFETAISLLQKTLGILEKLPQEQHSEGSVSARIGWLLL 466

Query:   571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630
              +G  S +   L+SA  + + S   K    G   N +G A ++      AA +F  A+ I
Sbjct:   467 FSGRVSQAVPYLESAAERLKESFGAKHFGVGYVYNNLGAAYLELGRPQSAAQMFAVAKDI 526

Query:   631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR 690
             ++   GP H D++    NL+  Y  MG    A+E  + V+   +    +A  ++++ KR 
Sbjct:   527 MDVSLGPNHVDSIDACQNLSKAYAGMGNYSLAVEFQQRVINAWDNHGDSAKDEMKEAKRL 586

Query:   691 LAEL-LKEAGRVRNRK 705
             L +L LK  G V   K
Sbjct:   587 LEDLRLKARGGVSTNK 602

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006457 "protein folding" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

ASPGD|ASPL0000018313 AN3547 [Emericella nidulans (taxid:162425)]

 Score = 266 (98.7 bits), Expect = 4.5e-19, P = 4.5e-19
 Identities = 99/449 (22%), Positives = 198/449 (44%)

Query:   240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE 299
             ++A ++ +RA+   E  A G      +  ++ L  ++   G+  EA  + +R++      
Sbjct:   812 KEAEKMYQRALAGKEK-ALGPDHTSTLDTVNNLGILYSDQGKLKEAEEMYQRALAGYEKA 870

Query:   300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAE 359
              G DH  +       LG+ Y+  G+++ +   Y   L+   + LG       +T   +  
Sbjct:   871 LGPDHT-STLVTVNNLGNLYSDQGKLKEAEKMYQQALKGYEKALGPDHTSTLDTVNNLGS 929

Query:   360 AHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY--V 417
              +    +  EAE++ Q AL    +   P           +G++  ++G  + A E Y   
Sbjct:   930 LYKNQGKLKEAEEMYQQALAGKEKALGPDHTSTLDTVNNLGILYKNQGKLKEAEEMYQRA 989

Query:   418 LASMSMAAN-GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVAS 476
             LA    A    H   + +++ ++G  Y    +  EA   Y +AL  ++ A G +H +   
Sbjct:   990 LAGKEKALGPDHTSTLMTVN-NLGSLYSDQGKLKEAEKMYQQALAGYEKALGPDHTSTLI 1048

Query:   477 VFVRLADLYHKIGKLRDSKSYCENALKIYGK---PNHGIPSEEIASGLIDIAAIYQSMNE 533
                 L +LY   GKL++++   + AL  Y K   P+H   +  + + + ++  +Y    +
Sbjct:  1049 TVNNLGNLYSDQGKLKEAEKMYQQALAGYEKALGPDH---TSTLVT-VNNLGNLYSDQGK 1104

Query:   534 LEQAVKLLNKALKIYGKT--PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591
             L++A K+  +AL  Y K   P   ST+  +   +G++Y   G   ++    + A++ +  
Sbjct:  1105 LKEAEKMYQQALAGYEKAVGPDHTSTLDTVN-NLGILYSDQGKLKEAEKMYQQALAGYEK 1163

Query:   592 --SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNL 649
               S +  S L  + +N +G     +  + EA +++++A    EK  GP H  TL   +NL
Sbjct:  1164 ALSPDHTSTL--MTVNNLGSLYKNQGKLKEAEEMYQQALAGKEKALGPDHTSTLMTVNNL 1221

Query:   650 AGTYDAMGRIDDAIEILEYVVGMREEKLG 678
                Y   G++ +A E+ +  +    + LG
Sbjct:  1222 GILYSDQGKLKEAEEMFQRALAGYGKALG 1250

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|Q5LU72 SPO1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 219 (82.2 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 74/290 (25%), Positives = 130/290 (44%)

Query:   416 YVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA 475
             + L+ +S A  G++ +  +++  +   YL+ ARF EA   Y + L +F    G NHP  A
Sbjct:    51 FTLSRLS-AVGGYDYENEALE--VAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYA 107

Query:   476 SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELE 535
             +    LA++     +  +++S    AL+I  +   G+   +    L+++A +       E
Sbjct:   108 TRLNNLAEVLRATARYDEAESLYRQALEI-DREALGLEHPDYGIDLLNLAGLLHDRGRYE 166

Query:   536 QAVKLLNKALKIYGKTPGQQS-TIAGIEAQM-GVMYYMTGNYSDSYNTLKSAIS-KFRTS 592
              A  L  +A+ I GK  G++    A  +  + G++  M   + ++    + A+    +T 
Sbjct:   167 AAEPLYREAMTIIGKVVGEEHYRYATAQNNLAGLLQDML-RFEEAEALCRQALEITSKTL 225

Query:   593 GEKKSALFGIALNQMG--LACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA 650
             GE  S ++   LN +   L   +RY   EA  L+ +A  I +K  G  H D     +NLA
Sbjct:   226 GESHS-VYATRLNNLAELLGTTERY--GEAEPLYRQALEITQKTLGEEHPDFAIRLNNLA 282

Query:   651 GTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700
                 A GR ++A  +    + +    LG A+PD        A LL    R
Sbjct:   283 VLLKATGRYEEAEPLYRQALEITHRTLGEAHPDYATRLNNFAGLLDSTER 332

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1186 SPO_1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 219 (82.2 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 74/290 (25%), Positives = 130/290 (44%)

Query:   416 YVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA 475
             + L+ +S A  G++ +  +++  +   YL+ ARF EA   Y + L +F    G NHP  A
Sbjct:    51 FTLSRLS-AVGGYDYENEALE--VAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYA 107

Query:   476 SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELE 535
             +    LA++     +  +++S    AL+I  +   G+   +    L+++A +       E
Sbjct:   108 TRLNNLAEVLRATARYDEAESLYRQALEI-DREALGLEHPDYGIDLLNLAGLLHDRGRYE 166

Query:   536 QAVKLLNKALKIYGKTPGQQS-TIAGIEAQM-GVMYYMTGNYSDSYNTLKSAIS-KFRTS 592
              A  L  +A+ I GK  G++    A  +  + G++  M   + ++    + A+    +T 
Sbjct:   167 AAEPLYREAMTIIGKVVGEEHYRYATAQNNLAGLLQDML-RFEEAEALCRQALEITSKTL 225

Query:   593 GEKKSALFGIALNQMG--LACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA 650
             GE  S ++   LN +   L   +RY   EA  L+ +A  I +K  G  H D     +NLA
Sbjct:   226 GESHS-VYATRLNNLAELLGTTERY--GEAEPLYRQALEITQKTLGEEHPDFAIRLNNLA 282

Query:   651 GTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700
                 A GR ++A  +    + +    LG A+PD        A LL    R
Sbjct:   283 VLLKATGRYEEAEPLYRQALEITHRTLGEAHPDYATRLNNFAGLLDSTER 332

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q21592 klc-1 "Protein KLC-1, isoform a" [Caenorhabditis elegans (taxid:6239)]

 Score = 189 (71.6 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 69/262 (26%), Positives = 120/262 (45%)

Query:   426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY 485
             N H LDVA++   +   Y +   F +A     KAL+      GENH +VA+    LA  Y
Sbjct:   237 NVH-LDVATMLNVLAIVYRNQENFKDAAIYLEKALSIRVQCCGENHHSVAATLNNLAIAY 295

Query:   486 HKIGKLRDSKSYCENALKIYGK---PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN 542
              K GK ++S+  C+ AL+I      PNH  P  ++A  L ++  + Q + + E+      
Sbjct:   296 GKRGKYKESEPLCKRALEIRKNLLGPNH--P--DVAKQLTNLGIVTQQLEKYEETENYFK 351

Query:   543 KALKIYGKT-PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG 601
             +AL IY +  P     +   + Q+  ++   G Y ++    K+ +SK   +G K   ++ 
Sbjct:   352 QALSIYNRAFPENHQNVIKTKNQLASVFLKQGKYQEAEEMYKNILSKVAITGNKP--IWR 409

Query:   602 IALNQMGLACVQRYTINEAAD-LFE-EARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI 659
             IA ++      QR  I +  D  F     T+++        + +    NLA  Y   G+ 
Sbjct:   410 IAEDREER---QRNGIPKVDDESFNVNPTTVMDS-------NVMSTIKNLAAVYRKQGK- 458

Query:   660 DDAIEILEYVVGMREEKLGTAN 681
             ++A   LE  +G +++  G A+
Sbjct:   459 EEAAGTLEEALGAKKQINGGAD 480

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00002214 klc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 189 (71.6 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 69/262 (26%), Positives = 120/262 (45%)

Query:   426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY 485
             N H LDVA++   +   Y +   F +A     KAL+      GENH +VA+    LA  Y
Sbjct:   257 NVH-LDVATMLNVLAIVYRNQENFKDAAIYLEKALSIRVQCCGENHHSVAATLNNLAIAY 315

Query:   486 HKIGKLRDSKSYCENALKIYGK---PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN 542
              K GK ++S+  C+ AL+I      PNH  P  ++A  L ++  + Q + + E+      
Sbjct:   316 GKRGKYKESEPLCKRALEIRKNLLGPNH--P--DVAKQLTNLGIVTQQLEKYEETENYFK 371

Query:   543 KALKIYGKT-PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG 601
             +AL IY +  P     +   + Q+  ++   G Y ++    K+ +SK   +G K   ++ 
Sbjct:   372 QALSIYNRAFPENHQNVIKTKNQLASVFLKQGKYQEAEEMYKNILSKVAITGNKP--IWR 429

Query:   602 IALNQMGLACVQRYTINEAAD-LFE-EARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI 659
             IA ++      QR  I +  D  F     T+++        + +    NLA  Y   G+ 
Sbjct:   430 IAEDREER---QRNGIPKVDDESFNVNPTTVMDS-------NVMSTIKNLAAVYRKQGK- 478

Query:   660 DDAIEILEYVVGMREEKLGTAN 681
             ++A   LE  +G +++  G A+
Sbjct:   479 EEAAGTLEEALGAKKQINGGAD 500

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0051295 "establishment of meiotic spindle localization" evidence=IGI;IMP

GO:0040038 "polar body extrusion after meiotic divisions" evidence=IGI;IMP

WB|WBGene00002215 klc-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 189 (71.6 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 88/423 (20%), Positives = 176/423 (41%)

Query:   193 KQRKFASLIAKFQNGAEDPLAAGLGNPALGPF-LLKQTREMISSGENPQKALELAK--RA 249
             K  K+ + I +F +G +      +    +GP  +  +T + +  G   ++ +  ++  + 
Sbjct:   130 KHLKYMASIKQFDDGTQSDTKTSVD---VGPQPVTNETLQELGFGPEDEEDMNASQFNQP 186

Query:   250 MKSFEICANGKPSLE---QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA- 305
               + ++ A+     E   ++  LH L   + S G+Y  A+P+ ++++E      G DH  
Sbjct:   187 TPANQMAASANVGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD 246

Query:   306 LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL 365
             +A     + L   Y    + + +       L I+ + LGE+   V  T   +A    +  
Sbjct:   247 VATMLNILAL--VYRDQNKYKEAANLLNEALSIREKCLGESHPAVAATLNNLAVLFGKRG 304

Query:   366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY--VLASMSM 423
             +F +AE +C+ AL+I  +       + A     + L+C ++G YE   ++Y   L     
Sbjct:   305 KFKDAEPLCKRALEIREKVLGDDHPDVAKQLNNLALLCQNQGKYEEVEKYYKRALEIYES 364

Query:   424 AANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA-----FKSAKGENHPAVASVF 478
                  + +VA    ++  AYL   ++ EA   Y + LT      F    GEN P +  + 
Sbjct:   365 KLGPDDPNVAKTKNNLSSAYLKQGKYKEAEELYKQILTRAHEREFGQISGENKP-IWQIA 423

Query:   479 VRLADLYHK-IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537
                 +  HK  G   + ++    A K+         S  + + L ++ A+Y+   + E A
Sbjct:   424 EEREENKHKGEGATANEQAGWAKAAKV--------DSPTVTTTLKNLGALYRRQGKYEAA 475

Query:   538 VKLLNKALKIYGK-TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK 596
               L + AL+   +  P +   + GI+     M  M      S N++ ++ S+     +  
Sbjct:   476 ETLEDVALRAKKQHEPLRSGAMGGIDEMSQSM--MASTIGGSRNSMTTSTSQTGLKNKLM 533

Query:   597 SAL 599
             +AL
Sbjct:   534 NAL 536

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0016938 "kinesin I complex" evidence=IPI

GO:0019894 "kinesin binding" evidence=IPI

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048489 "synaptic vesicle transport" evidence=IMP

GO:0048675 "axon extension" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0051295 "establishment of meiotic spindle localization" evidence=IGI;IMP

GO:0040038 "polar body extrusion after meiotic divisions" evidence=IGI;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	728
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	9e-10
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-09
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	8e-09
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-08
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-04
pfam13374	42	pfam13374, TPR_10, Tetratricopeptide repeat	2e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	7e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 17/111 (15%)

Query: 437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKS 496
            ++G+ Y  L  +DEA+  Y KAL        E  P  A  +  LA  Y+K+GK  ++  
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKAL--------ELDPDNADAYYNLAAAYYKLGKYEEALE 55

Query: 497 YCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
             E AL++   P++       A    ++   Y  + + E+A++   KAL++
Sbjct: 56  DYEKALEL--DPDN-------AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG 489
            D+A+   ++      L  +DEA+    KAL   +   GE+HP  A     LA LY  +G
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELAREL-GEDHPETARALNNLARLYLALG 60

Query: 490 KLRDSKSYCENALKIYGK 507
              ++  Y E AL +   
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK--PNHGIPSEEIASGLIDIAAIY 528
           HP +A+    LA +  ++G   ++    E AL++  +   +H     E A  L ++A +Y
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHP----ETARALNNLARLY 56

Query: 529 QSMNELEQAVKLLNKALKIYGK 550
            ++ + ++A++ L KAL +   
Sbjct: 57  LALGDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDA 662
           ALN + L   +    +EA +L E+A  +   E G  H +T    +NLA  Y A+G  D+A
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 663 IEILEYVVGMREE 675
           +E LE  + +RE 
Sbjct: 66  LEYLEKALALREA 78

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 52.5 bits (124), Expect = 2e-07
 Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 19/267 (7%)

Query: 282 YNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ 341
             EA+ +LE  + +  L      AL      ++L     + G +    L       ++  
Sbjct: 19  LAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEA 78

Query: 342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGL 401
           +         E    +AEA +      EA    + AL++  +  +     + A+  L   
Sbjct: 79  LELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138

Query: 402 ICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALT 461
                GDYE ALE Y  A          L++      + +A L+L    EA+  Y +AL 
Sbjct: 139 ALYELGDYEEALELYEKA----------LELDPELNELAEALLALGALLEALGRYEEALE 188

Query: 462 AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGL 521
             + A   N    A   + L  LY K+GK  ++  Y E AL++           + A  L
Sbjct: 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD---------PDNAEAL 239

Query: 522 IDIAAIYQSMNELEQAVKLLNKALKIY 548
            ++A +   +   E+A++ L KAL++ 
Sbjct: 240 YNLALLLLELGRYEEALEALEKALELD 266

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 16/108 (14%)

Query: 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAE 371
            + LG+ Y  LG  + ++  Y   LE+        D    +    +A A+ +  +++EA 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEAL 54

Query: 372 KICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA 419
           +  + AL++  +N              +GL     G YE ALE Y  A
Sbjct: 55  EDYEKALELDPDNAKA--------YYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 15/113 (13%)

Query: 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN 580
           L+++  +Y  + + ++A++   KAL++           A     +   YY  G Y ++  
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDN-------ADAYYNLAAAYYKLGKYEEALE 55

Query: 581 TLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK 633
             + A+     + +        A   +GLA  +     EA + +E+A  +   
Sbjct: 56  DYEKALELDPDNAK--------AYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKL 540
           L +LY+K+G   ++  Y E AL++        P    A    ++AA Y  + + E+A++ 
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELD-------PDNADA--YYNLAAAYYKLGKYEEALED 56

Query: 541 LNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591
             KAL++           A     +G+ YY  G Y ++    + A+     
Sbjct: 57  YEKALELD-------PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 15/76 (19%), Positives = 39/76 (51%)

Query: 515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN 574
            ++A+ L ++A + + + + ++A++LL KAL++  +        A     +  +Y   G+
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61

Query: 575 YSDSYNTLKSAISKFR 590
           Y ++   L+ A++   
Sbjct: 62  YDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAML 322
            +    L+ LA +   LG Y+EA+ +LE+++E+           A+      L   Y  L
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALN--NLARLYLAL 59

Query: 323 GQIENSILCYTAGLEIQRQ 341
           G  + ++      L ++  
Sbjct: 60  GDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 642 TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD 683
           T    +NLA    A GR ++A E+LE  + +R   LG  +PD
Sbjct: 1   TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPDHPD 42

Length = 42

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 18/97 (18%)

Query: 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA 425
            +DEA +  + AL++  +N              +       G YE ALE Y  A      
Sbjct: 15  DYDEALEYYEKALELDPDNADA--------YYNLAAAYYKLGKYEEALEDYEKAL----- 61

Query: 426 NGHELDVASIDC--SIGDAYLSLARFDEAIFSYHKAL 460
              ELD  +     ++G AY  L +++EA+ +Y KAL
Sbjct: 62  ---ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 237 ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI 295
            +  +ALEL ++A++         P  E    L+ LA ++ +LG Y+EA+  LE+++ +
Sbjct: 19  GDYDEALELLEKALELARELGEDHP--ETARALNNLARLYLALGDYDEALEYLEKALAL 75

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 399 MGLICDSKGDYEAALEHYVLA-SMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYH 457
           + L+    GDY+ ALE    A  ++        + A    ++   YL+L  +DEA+    
Sbjct: 11  LALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLE 70

Query: 458 KALTAFKS 465
           KAL   ++
Sbjct: 71  KALALREA 78

Length = 78

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 59/350 (16%), Positives = 109/350 (31%), Gaps = 81/350 (23%)

Query: 368 DEAEKICQMALDIHREN----TSPASIEEAADRRLMGLICDSKGDYEAALEHY------- 416
            +A +  + AL I  +      + A I+            D+   +E  L          
Sbjct: 482 AKAREAFEKALSIEPDFFPAAANLARIDIQEGN-----PDDAIQRFEKVLTIDPKNLRAI 536

Query: 417 -VLASMSMAANGHELDVASIDCSIG------DAYLSLARFDEAIFSYHKALTAFKSAKGE 469
             LA + +     E  VA ++ +        +  L+LA++        KAL     A   
Sbjct: 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD- 595

Query: 470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ 529
             P     ++ L       G L  + S  +  L +  +P+  +        L+ +A  Y 
Sbjct: 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALA-------LLLLADAYA 646

Query: 530 SMNELEQAVKLLNKALKIY-----------------GKTPGQQSTIAGIEAQ-------- 564
            M    +A+  L +AL++                   +T   +     ++ Q        
Sbjct: 647 VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF 706

Query: 565 --MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTIN--EA 620
              G +Y    +Y  +    + A+ +  +S            N + L      + N  EA
Sbjct: 707 ELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ-----------NAIKLHRALLASGNTAEA 755

Query: 621 ADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV 670
               E             H +   + + LA  Y A    D AI+  + VV
Sbjct: 756 VKTLEAWLKT--------HPNDAVLRTALAELYLAQKDYDKAIKHYQTVV 797

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKI 373
            L      LG  + ++      LE+ R+ LGE           +A  ++    +DEA + 
Sbjct: 10  NLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLALGDYDEALEY 68

Query: 374 CQMALDIHRE 383
            + AL +   
Sbjct: 69  LEKALALREA 78

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.6 bits (93), Expect = 0.002
 Identities = 63/289 (21%), Positives = 113/289 (39%), Gaps = 39/289 (13%)

Query: 413 LEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP 472
                LA +  A      +  ++  +       L    EA+    +AL      +   + 
Sbjct: 3   DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEAL------ELLPNS 56

Query: 473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMN 532
            +A + + LA    K+G+L ++    E AL++   PN       +A  L+++  + +++ 
Sbjct: 57  DLAGLLLLLALALLKLGRLEEALELLEKALELELLPN-------LAEALLNLGLLLEALG 109

Query: 533 ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS 592
           + E+A++LL KAL +          +A     +G +Y + G+Y ++    + A+      
Sbjct: 110 KYEEALELLEKALALD-----PDPDLAEALLALGALYEL-GDYEEALELYEKALELDPEL 163

Query: 593 GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT 652
            E   AL  +                EA   +EEA  +LEK       D      NL   
Sbjct: 164 NELAEALLALGALL------------EALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211

Query: 653 YDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRV 701
           Y  +G+ ++A+E          EK    +PD  +    LA LL E GR 
Sbjct: 212 YLKLGKYEEALEYY--------EKALELDPDNAEALYNLALLLLELGRY 252

Length = 291

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 350 VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDY 409
           +      +A    +   +DEA ++ + AL++          E A     +  +  + GDY
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALEL-ARELGEDHPETARALNNLARLYLALGDY 62

Query: 410 EAALEHY 416
           + ALE+ 
Sbjct: 63  DEALEYL 69

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	728
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.98
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.95
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.95
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.95
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.93
KOG2003	840	consensus TPR repeat-containing protein [General f	99.92
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.92
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.91
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.91
PRK14574	822	hmsH outer membrane protein; Provisional	99.9
KOG1126	638	consensus DNA-binding cell division cycle control	99.9
KOG2003	840	consensus TPR repeat-containing protein [General f	99.9
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
KOG1126	638	consensus DNA-binding cell division cycle control	99.89
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.89
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.88
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.87
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.87
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.87
KOG2076	895	consensus RNA polymerase III transcription factor	99.86
PLN03218	1060	maturation of RBCL 1; Provisional	99.86
KOG2076	895	consensus RNA polymerase III transcription factor	99.86
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.83
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.83
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.83
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.83
PRK14574	822	hmsH outer membrane protein; Provisional	99.82
PRK04841	903	transcriptional regulator MalT; Provisional	99.82
PLN03218	1060	maturation of RBCL 1; Provisional	99.81
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.8
KOG1129	478	consensus TPR repeat-containing protein [General f	99.79
PLN03077	857	Protein ECB2; Provisional	99.78
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.78
KOG1129	478	consensus TPR repeat-containing protein [General f	99.77
PRK04841	903	transcriptional regulator MalT; Provisional	99.77
PLN03077	857	Protein ECB2; Provisional	99.77
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.76
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.75
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.75
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.73
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.73
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.72
PRK12370	553	invasion protein regulator; Provisional	99.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.72
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.72
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.72
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.71
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.71
PRK12370	553	invasion protein regulator; Provisional	99.71
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.7
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.69
PRK11189	296	lipoprotein NlpI; Provisional	99.69
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.69
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.69
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.68
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.68
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.67
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.67
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.67
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.67
PRK11189	296	lipoprotein NlpI; Provisional	99.67
KOG1125	579	consensus TPR repeat-containing protein [General f	99.66
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.66
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.66
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.65
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.64
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.63
KOG1125	579	consensus TPR repeat-containing protein [General f	99.61
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.61
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.61
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.58
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.58
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.54
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.5
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.49
PLN02789	320	farnesyltranstransferase	99.46
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.45
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.45
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.44
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.43
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.43
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.41
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.39
PLN02789	320	farnesyltranstransferase	99.39
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.35
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.32
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.31
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	99.3
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.28
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.28
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.26
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.23
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.23
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.22
PRK15359	144	type III secretion system chaperone protein SscB;	99.2
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.19
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.18
PRK15359	144	type III secretion system chaperone protein SscB;	99.17
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.16
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.13
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.11
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.07
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.04
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.04
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.03
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.03
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	99.02
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.02
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	99.01
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.99
KOG0553	304	consensus TPR repeat-containing protein [General f	98.99
KOG0553	304	consensus TPR repeat-containing protein [General f	98.98
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.97
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.95
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.95
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.94
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.94
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.92
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.89
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.88
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.87
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.87
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.86
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.86
KOG1585	308	consensus Protein required for fusion of vesicles	98.86
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.83
KOG1585	308	consensus Protein required for fusion of vesicles	98.83
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.83
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.83
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.81
KOG2471	696	consensus TPR repeat-containing protein [General f	98.81
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.8
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.8
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.75
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.74
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.73
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.73
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.72
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.71
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.7
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.67
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.65
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.61
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.6
KOG1586	288	consensus Protein required for fusion of vesicles	98.6
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.59
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.59
KOG1586	288	consensus Protein required for fusion of vesicles	98.58
KOG2471	696	consensus TPR repeat-containing protein [General f	98.58
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.57
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.57
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.56
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.56
PRK10803	263	tol-pal system protein YbgF; Provisional	98.55
PF12688	120	TPR_5: Tetratrico peptide repeat	98.53
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.52
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.52
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.5
PF12688	120	TPR_5: Tetratrico peptide repeat	98.49
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.48
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.45
COG5159	421	RPN6 26S proteasome regulatory complex component [	98.45
PRK10803	263	tol-pal system protein YbgF; Provisional	98.45
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.45
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.44
KOG1463	411	consensus 26S proteasome regulatory complex, subun	98.44
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.43
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.42
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.36
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.33
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.33
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.28
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.26
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.25
KOG4234	271	consensus TPR repeat-containing protein [General f	98.24
KOG4234	271	consensus TPR repeat-containing protein [General f	98.24
PRK11906	458	transcriptional regulator; Provisional	98.23
KOG4555	175	consensus TPR repeat-containing protein [Function	98.23
KOG4555	175	consensus TPR repeat-containing protein [Function	98.23
PRK15331	165	chaperone protein SicA; Provisional	98.21
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.21
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.2
PRK11906	458	transcriptional regulator; Provisional	98.2
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.19
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.16
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.16
COG5159	421	RPN6 26S proteasome regulatory complex component [	98.15
PF13512	142	TPR_18: Tetratricopeptide repeat	98.14
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.14
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.14
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.14
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.13
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.13
PRK15331	165	chaperone protein SicA; Provisional	98.13
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.1
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.09
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.07
PF13512	142	TPR_18: Tetratricopeptide repeat	98.04
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.04
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.01
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.97
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.95
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.94
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.91
PF13371	73	TPR_9: Tetratricopeptide repeat	97.88
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.88
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.87
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.86
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.84
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.84
KOG1463	411	consensus 26S proteasome regulatory complex, subun	97.79
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.78
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.77
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.76
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.74
PF13371	73	TPR_9: Tetratricopeptide repeat	97.73
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.72
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.71
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.65
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.63
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.62
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.57
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.54
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.5
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.48
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.48
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.47
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.45
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.44
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.44
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.42
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.38
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.38
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.37
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.37
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.36
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.34
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.28
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.24
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.22
KOG3783	546	consensus Uncharacterized conserved protein [Funct	97.22
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.2
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.19
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.19
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.16
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.12
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.11
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.06
PF13428	44	TPR_14: Tetratricopeptide repeat	97.02
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.0
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.95
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.95
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.92
PF13428	44	TPR_14: Tetratricopeptide repeat	96.87
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.85
PF13431	34	TPR_17: Tetratricopeptide repeat	96.83
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.82
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.73
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.65
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.63
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.55
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.51
PF13431	34	TPR_17: Tetratricopeptide repeat	96.43
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.42
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	96.41
KOG1258	577	consensus mRNA processing protein [RNA processing	96.41
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.4
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.39
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.37
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.34
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.32
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.25
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.24
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.15
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.95
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.86
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	95.81
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.78
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.75
KOG2581	493	consensus 26S proteasome regulatory complex, subun	95.71
PRK14707	2710	hypothetical protein; Provisional	95.67
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.65
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.64
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.57
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.48
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.48
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	95.46
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.46
KOG3783	546	consensus Uncharacterized conserved protein [Funct	95.43
PRK14707	2710	hypothetical protein; Provisional	95.41
KOG1258	577	consensus mRNA processing protein [RNA processing	95.4
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	95.28
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.26
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.13
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	94.99
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.97
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.94
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.71
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.57
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	94.42
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.31
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.21
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.16
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	94.09
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.09
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.96
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.94
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.9
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.73
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.66
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.65
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.64
COG5187	412	RPN7 26S proteasome regulatory complex component,	93.4
COG5187	412	RPN7 26S proteasome regulatory complex component,	93.39
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.33
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.33
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.29
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.23
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	93.08
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	92.65
KOG0687	393	consensus 26S proteasome regulatory complex, subun	92.52
PRK10941	269	hypothetical protein; Provisional	92.52
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	92.43
KOG0687	393	consensus 26S proteasome regulatory complex, subun	92.38
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	92.25
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.09
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.04
COG3947	361	Response regulator containing CheY-like receiver a	91.94
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	91.75
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	91.61
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.08
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.97
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.96
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	90.85
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	90.77
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.52
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	90.21
KOG2422	665	consensus Uncharacterized conserved protein [Funct	89.98
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	89.97
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	89.95
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	89.71
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.49
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	89.36
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.31
KOG3364	149	consensus Membrane protein involved in organellar	89.25
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.98
KOG4014	248	consensus Uncharacterized conserved protein (conta	88.88
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.82
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	88.51
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	88.45
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.12
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	87.94
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	87.92
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.91
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.85
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.49
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	87.05
PRK10941	269	hypothetical protein; Provisional	86.77
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	86.64
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	86.3
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	86.09
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	85.95
COG4976	287	Predicted methyltransferase (contains TPR repeat)	85.58
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.49
KOG1310	758	consensus WD40 repeat protein [General function pr	85.39
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	85.38
COG4976	287	Predicted methyltransferase (contains TPR repeat)	85.28
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	84.99
KOG2422	665	consensus Uncharacterized conserved protein [Funct	84.83
KOG4014	248	consensus Uncharacterized conserved protein (conta	84.62
PF04212	69	MIT: MIT (microtubule interacting and transport) d	84.47
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	84.44
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	84.36
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	84.33
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	83.96
KOG2908	380	consensus 26S proteasome regulatory complex, subun	83.83
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	83.42
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	83.38
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.31
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	83.22
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.1
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	81.68
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	81.39
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	81.15
COG3947	361	Response regulator containing CheY-like receiver a	80.74
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	80.61
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	80.19

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-42  Score=347.37  Aligned_cols=410  Identities=19%  Similarity=0.256  Sum_probs=370.8

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhh
Q 004829          216 LGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI  295 (728)
Q Consensus       216 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  295 (728)
                      ...|..++.+-.+|+.+..+| +++.|+.+|+.++.+         .|+.+.+|.++|.++...|+.+.|..+|..++++
T Consensus       110 r~~~q~ae~ysn~aN~~kerg-~~~~al~~y~~aiel---------~p~fida~inla~al~~~~~~~~a~~~~~~alql  179 (966)
T KOG4626|consen  110 RKNPQGAEAYSNLANILKERG-QLQDALALYRAAIEL---------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL  179 (966)
T ss_pred             hccchHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhc---------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence            456778899999999999997 999999999999986         3777999999999999999999999999999988


Q ss_pred             hhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829          296 PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQ  375 (728)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  375 (728)
                      .     +..    +-+...+|.++..+|+..+|..+|.+|++.        .|..+.+|.+||.++..+|+...|+..|+
T Consensus       180 n-----P~l----~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~~Gei~~aiq~y~  242 (966)
T KOG4626|consen  180 N-----PDL----YCARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNAQGEIWLAIQHYE  242 (966)
T ss_pred             C-----cch----hhhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhhcchHHHHHHHHH
Confidence            6     222    234788999999999999999999999998        88999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 004829          376 MALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFS  455 (728)
Q Consensus       376 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  455 (728)
                      +|+.+.|...        .+|.+||.+|-..+.|++|+..|.+|+.+      .|..+.++.++|.+|+.+|..+-|+..
T Consensus       243 eAvkldP~f~--------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l------rpn~A~a~gNla~iYyeqG~ldlAI~~  308 (966)
T KOG4626|consen  243 EAVKLDPNFL--------DAYINLGNVYKEARIFDRAVSCYLRALNL------RPNHAVAHGNLACIYYEQGLLDLAIDT  308 (966)
T ss_pred             HhhcCCCcch--------HHHhhHHHHHHHHhcchHHHHHHHHHHhc------CCcchhhccceEEEEeccccHHHHHHH
Confidence            9999876654        46999999999999999999999999865      688899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHH
Q 004829          456 YHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELE  535 (728)
Q Consensus       456 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  535 (728)
                      |++++++        .|....++.+||.++...|+..+|..+|.+++.+         .+..+.++++||.+|..+|.++
T Consensus       309 Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---------~p~hadam~NLgni~~E~~~~e  371 (966)
T KOG4626|consen  309 YKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---------CPNHADAMNNLGNIYREQGKIE  371 (966)
T ss_pred             HHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---------CCccHHHHHHHHHHHHHhccch
Confidence            9999999        9999999999999999999999999999999999         3556788999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC
Q 004829          536 QAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY  615 (728)
Q Consensus       536 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  615 (728)
                      +|..+|.+++++++..       +....+||.+|..+|++++|+.+|++++.+        .+..+.++.++|..|..+|
T Consensus       372 ~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g  436 (966)
T KOG4626|consen  372 EATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMG  436 (966)
T ss_pred             HHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhh
Confidence            9999999999998776       677889999999999999999999999998        6778999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829          616 TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL  695 (728)
Q Consensus       616 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  695 (728)
                      +...|+.+|.+|+.+        +|..+++..+||.+|...|+..+|+..|+.++.+.        |+..+++.+|+.++
T Consensus       437 ~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk--------PDfpdA~cNllh~l  500 (966)
T KOG4626|consen  437 DVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK--------PDFPDAYCNLLHCL  500 (966)
T ss_pred             hHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC--------CCCchhhhHHHHHH
Confidence            999999999999999        99999999999999999999999999999999964        88888999999988


Q ss_pred             HHhCChhHHHHHHHHHHHhh
Q 004829          696 KEAGRVRNRKSRSLVTFLDS  715 (728)
Q Consensus       696 ~~~g~~~~A~~~~l~~ll~~  715 (728)
                      .-.-+|.+-- +.+.++...
T Consensus       501 q~vcdw~D~d-~~~~kl~si  519 (966)
T KOG4626|consen  501 QIVCDWTDYD-KRMKKLVSI  519 (966)
T ss_pred             HHHhcccchH-HHHHHHHHH
Confidence            8777766644 444444443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-42  Score=347.19  Aligned_cols=418  Identities=20%  Similarity=0.270  Sum_probs=376.6

Q ss_pred             CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhh
Q 004829          215 GLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVE  294 (728)
Q Consensus       215 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  294 (728)
                      ...+|.....++-++..+++.. +++.....-..+++.         .+..+.+|.++|.++...|++++|+.+|+.+++
T Consensus        75 ~~~d~t~~~~llll~ai~~q~~-r~d~s~a~~~~a~r~---------~~q~ae~ysn~aN~~kerg~~~~al~~y~~aie  144 (966)
T KOG4626|consen   75 GQEDPTNTERLLLLSAIFFQGS-RLDKSSAGSLLAIRK---------NPQGAEAYSNLANILKERGQLQDALALYRAAIE  144 (966)
T ss_pred             hccCCCcccceeeehhhhhccc-chhhhhhhhhhhhhc---------cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh
Confidence            3445554455555555555552 566655555555543         366789999999999999999999999999998


Q ss_pred             hhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829          295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC  374 (728)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  374 (728)
                      +.     ++    .+.+|.++|.++...|+.+.|..+|..++++        +|...-+...+|.++...|+..+|..+|
T Consensus       145 l~-----p~----fida~inla~al~~~~~~~~a~~~~~~alql--------nP~l~ca~s~lgnLlka~Grl~ea~~cY  207 (966)
T KOG4626|consen  145 LK-----PK----FIDAYINLAAALVTQGDLELAVQCFFEALQL--------NPDLYCARSDLGNLLKAEGRLEEAKACY  207 (966)
T ss_pred             cC-----ch----hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--------CcchhhhhcchhHHHHhhcccchhHHHH
Confidence            85     33    3456999999999999999999999999999        8999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 004829          375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIF  454 (728)
Q Consensus       375 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  454 (728)
                      .+|++..+..        +.+|.+||.++..+|+...|+.+|++|+.+      +|....+|.+||.+|...+.|+.|+.
T Consensus       208 lkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAvkl------dP~f~dAYiNLGnV~ke~~~~d~Avs  273 (966)
T KOG4626|consen  208 LKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKL------DPNFLDAYINLGNVYKEARIFDRAVS  273 (966)
T ss_pred             HHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhhcC------CCcchHHHhhHHHHHHHHhcchHHHH
Confidence            9999877633        457999999999999999999999999866      89999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829          455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL  534 (728)
Q Consensus       455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  534 (728)
                      .|.+|+.+        .|..+.++.++|.+|+.+|..+-|+..|++++++         .|....++++||..+...|+.
T Consensus       274 ~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---------~P~F~~Ay~NlanALkd~G~V  336 (966)
T KOG4626|consen  274 CYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---------QPNFPDAYNNLANALKDKGSV  336 (966)
T ss_pred             HHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc---------CCCchHHHhHHHHHHHhccch
Confidence            99999998        9999999999999999999999999999999998         566788999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc
Q 004829          535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR  614 (728)
Q Consensus       535 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  614 (728)
                      .+|..+|.+++.+.+..       +.+.++||.+|..+|.+++|..+|.++++.        .+..+.++.+||.+|.++
T Consensus       337 ~ea~~cYnkaL~l~p~h-------adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqq  401 (966)
T KOG4626|consen  337 TEAVDCYNKALRLCPNH-------ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQ  401 (966)
T ss_pred             HHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhc
Confidence            99999999999997766       678899999999999999999999999998        566789999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 004829          615 YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAEL  694 (728)
Q Consensus       615 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~  694 (728)
                      |++++|+.+|++++.+        .|..++++.++|..|..+|+...|+.+|.+|+.+        +|..++++.+||.+
T Consensus       402 gnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi  465 (966)
T KOG4626|consen  402 GNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASI  465 (966)
T ss_pred             ccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHH
Confidence            9999999999999999        9999999999999999999999999999999994        69999999999999


Q ss_pred             HHHhCChhHHHHHHHHHHHhhccccccc
Q 004829          695 LKEAGRVRNRKSRSLVTFLDSNSQNLKE  722 (728)
Q Consensus       695 ~~~~g~~~~A~~~~l~~ll~~~~~~~~~  722 (728)
                      |...|+..+|+ ..+++.+...|+..+.
T Consensus       466 ~kDsGni~~AI-~sY~~aLklkPDfpdA  492 (966)
T KOG4626|consen  466 YKDSGNIPEAI-QSYRTALKLKPDFPDA  492 (966)
T ss_pred             hhccCCcHHHH-HHHHHHHccCCCCchh
Confidence            99999999999 9999999999987653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=2.8e-30  Score=269.11  Aligned_cols=421  Identities=40%  Similarity=0.500  Sum_probs=359.3

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh
Q 004829          218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV  297 (728)
Q Consensus       218 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  297 (728)
                      .+.....++..++.....++.+.+.+....++++..++....    .....+......+...+.+++|....++......
T Consensus        84 ~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~----~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~  159 (508)
T KOG1840|consen   84 SEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVAQ----LEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPV  159 (508)
T ss_pred             cchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhhhcccccccccch
Confidence            456667788888888888878889999888888887665321    1112355566677777788888877776554320


Q ss_pred             hhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA  377 (728)
Q Consensus       298 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  377 (728)
                                    .-.++..+...-+.+..+..+...+.+..+..+..+|....+...++..|..+|+|+.|+..++.+
T Consensus       160 --------------~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~A  225 (508)
T KOG1840|consen  160 --------------KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQA  225 (508)
T ss_pred             --------------hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                          112333333333444667777777777777888889999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829          378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYH  457 (728)
Q Consensus       378 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  457 (728)
                      +++..+..+.                                        .++.+......+|.+|..++++.+|+..|+
T Consensus       226 l~~l~k~~G~----------------------------------------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~  265 (508)
T KOG1840|consen  226 LRILEKTSGL----------------------------------------KHLVVASMLNILALVYRSLGKYDEAVNLYE  265 (508)
T ss_pred             HHHHHHccCc----------------------------------------cCHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            9885544321                                        234445556689999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829          458 KALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA  537 (728)
Q Consensus       458 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  537 (728)
                      +|+.+.+..+|.++|..+.++.+||.+|...|++++|..++++|+++.++. .+..++.....+.+++.++..++++++|
T Consensus       266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-~~~~~~~v~~~l~~~~~~~~~~~~~Eea  344 (508)
T KOG1840|consen  266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-LGASHPEVAAQLSELAAILQSMNEYEEA  344 (508)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHHhcchhHH
Confidence            999999999999999999999999999999999999999999999999984 4778999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCC
Q 004829          538 VKLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT  616 (728)
Q Consensus       538 ~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  616 (728)
                      ..+++++++++.+.++... .++.++.+||.+|+.+|+|.+|.++|++|+.+.+...+.........+..||..|.+.++
T Consensus       345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~  424 (508)
T KOG1840|consen  345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK  424 (508)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence            9999999999998888877 899999999999999999999999999999999999888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829          617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLK  696 (728)
Q Consensus       617 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~  696 (728)
                      +.+|..+|.++..+. ...|+++|++...|.+||.+|..+|++++|+++.++++..++..+|..+|.....-..++....
T Consensus       425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (508)
T KOG1840|consen  425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADLSK  503 (508)
T ss_pred             cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999999998887777776654


Q ss_pred             Hh
Q 004829          697 EA  698 (728)
Q Consensus       697 ~~  698 (728)
                      ..
T Consensus       504 ~~  505 (508)
T KOG1840|consen  504 EA  505 (508)
T ss_pred             Hh
Confidence            43

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.3e-30  Score=292.95  Aligned_cols=421  Identities=18%  Similarity=0.181  Sum_probs=314.3

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhc
Q 004829          221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLED  300 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  300 (728)
                      .+..+..+|..++..| +|++|+.+|++++.+.       ++   ...+.++|.||..+|++++|+..+++++++.    
T Consensus       126 ~a~~~k~~G~~~~~~~-~~~~Ai~~y~~al~~~-------p~---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----  190 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNK-DFNKAIKLYSKAIECK-------PD---PVYYSNRAACHNALGDWEKVVEDTTAALELD----  190 (615)
T ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC-------Cc---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----
Confidence            4667899999999997 9999999999999852       22   3468899999999999999999999999875    


Q ss_pred             CCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829          301 GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDI  380 (728)
Q Consensus       301 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  380 (728)
                       ++..    .+++.+|.+|..+|++++|+..|..+....     ..........  +...+ .    ..+...+..++..
T Consensus       191 -p~~~----~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-----~~~~~~~~~~--~~~~l-~----~~a~~~~~~~l~~  253 (615)
T TIGR00990       191 -PDYS----KALNRRANAYDGLGKYADALLDLTASCIID-----GFRNEQSAQA--VERLL-K----KFAESKAKEILET  253 (615)
T ss_pred             -CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccHHHHHH--HHHHH-H----HHHHHHHHHHHhc
Confidence             4433    359999999999999999999997665441     0011110000  00000 0    0111111111111


Q ss_pred             HHHcCC-------------------------CCcHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHhcCCChhH
Q 004829          381 HRENTS-------------------------PASIEEAADRRLMGLIC---DSKGDYEAALEHYVLASMSMAANGHELDV  432 (728)
Q Consensus       381 ~~~~~~-------------------------~~~~~~a~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~  432 (728)
                      .+....                         .........+..++..+   ...+++++|+..|++++...   ...+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~---~~~~~~  330 (615)
T TIGR00990       254 KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG---KLGEKE  330 (615)
T ss_pred             CCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC---CCChhh
Confidence            100000                         00000011223333332   23478999999999887542   235677


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829          433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI  512 (728)
Q Consensus       433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (728)
                      +.++..+|.++..+|++++|+..|++++++        .|....++..+|.++...|++++|+.+|++++++.       
T Consensus       331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------  395 (615)
T TIGR00990       331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-------  395 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------
Confidence            889999999999999999999999999998        88888999999999999999999999999999882       


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS  592 (728)
Q Consensus       513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  592 (728)
                        |....++..+|.++...|++++|+.+|++++.+.+..       ...+..+|.++..+|++++|+..|++++..    
T Consensus       396 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~----  462 (615)
T TIGR00990       396 --SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCKKN----  462 (615)
T ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence              3346789999999999999999999999999886554       456789999999999999999999999986    


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          593 GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       593 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                          .+....++..+|.++...|++++|+..|++++.+..... ..+......+...+.++...|++++|+.++++++.+
T Consensus       463 ----~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l  537 (615)
T TIGR00990       463 ----FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALALFQWKQDFIEAENLCEKALII  537 (615)
T ss_pred             ----CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence                233457889999999999999999999999999832210 001111222222333445579999999999999984


Q ss_pred             HHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          673 REEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       673 ~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                              +|+...++..||.++..+|++++|+ ..++.+++..+.
T Consensus       538 --------~p~~~~a~~~la~~~~~~g~~~eAi-~~~e~A~~l~~~  574 (615)
T TIGR00990       538 --------DPECDIAVATMAQLLLQQGDVDEAL-KLFERAAELART  574 (615)
T ss_pred             --------CCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHhcc
Confidence                    4677778999999999999999999 888888877654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.98  E-value=8.8e-29  Score=294.65  Aligned_cols=409  Identities=18%  Similarity=0.181  Sum_probs=246.0

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh
Q 004829          218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV  297 (728)
Q Consensus       218 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  297 (728)
                      .|.....+..+|..+...| ++++|+.+|++++...         |....++..+|.++...|++++|+..|++++... 
T Consensus       461 ~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-  529 (899)
T TIGR02917       461 QPDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIE---------PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-  529 (899)
T ss_pred             CCCCcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence            4555566677777777775 7777777777776541         2334456667777777777777777777776543 


Q ss_pred             hhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA  377 (728)
Q Consensus       298 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  377 (728)
                          +.+    ..++..++.++...|++++|+.++++++..        .|.....+..++.+|...|++++|+..++++
T Consensus       530 ----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  593 (899)
T TIGR02917       530 ----PKN----LRAILALAGLYLRTGNEEEAVAWLEKAAEL--------NPQEIEPALALAQYYLGKGQLKKALAILNEA  593 (899)
T ss_pred             ----cCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                222    223666677777777777777777776655        4445556666666677777777777776666


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829          378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYH  457 (728)
Q Consensus       378 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  457 (728)
                      +...+..        ..++..+|.++...|++++|+..|++++..      .+....++..+|.++...|++++|+.+|+
T Consensus       594 ~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  659 (899)
T TIGR02917       594 ADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLADAYAVMKNYAKAITSLK  659 (899)
T ss_pred             HHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5433221        234666777777777777777777766543      23344566677777777777777777777


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829          458 KALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA  537 (728)
Q Consensus       458 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  537 (728)
                      +++..        .|....++..++.++...|++++|+.+++.+....         +.....+..+|.++...|++++|
T Consensus       660 ~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~A  722 (899)
T TIGR02917       660 RALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---------PKAALGFELEGDLYLRQKDYPAA  722 (899)
T ss_pred             HHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------cCChHHHHHHHHHHHHCCCHHHH
Confidence            77665        44445555566666666666666666665554441         12234455566666666666666


Q ss_pred             HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829          538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI  617 (728)
Q Consensus       538 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  617 (728)
                      +..|++++...+..        ..+..++.++...|++++|+..+++++..        .+....++..+|.+|...|++
T Consensus       723 ~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~  786 (899)
T TIGR02917       723 IQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKT--------HPNDAVLRTALAELYLAQKDY  786 (899)
T ss_pred             HHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCH
Confidence            66666666553322        23345566666666666666666665553        111234556666666666666


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829          618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE  697 (728)
Q Consensus       618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~  697 (728)
                      ++|+.+|+++++.        +|....++..++.++...|+ .+|+.++++++.+.        |+....+..+|.++..
T Consensus       787 ~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~  849 (899)
T TIGR02917       787 DKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--------PNIPAILDTLGWLLVE  849 (899)
T ss_pred             HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHH
Confidence            6666666666655        44445555566666666666 55666666655532        3333344555566666


Q ss_pred             hCChhHHHHHHHHHHHhhccc
Q 004829          698 AGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       698 ~g~~~~A~~~~l~~ll~~~~~  718 (728)
                      .|++++|. ..++.+++..|.
T Consensus       850 ~g~~~~A~-~~~~~a~~~~~~  869 (899)
T TIGR02917       850 KGEADRAL-PLLRKAVNIAPE  869 (899)
T ss_pred             cCCHHHHH-HHHHHHHhhCCC
Confidence            66666666 555555555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.98  E-value=1e-28  Score=294.13  Aligned_cols=408  Identities=18%  Similarity=0.213  Sum_probs=352.4

Q ss_pred             CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhh
Q 004829          215 GLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVE  294 (728)
Q Consensus       215 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  294 (728)
                      ...+|.....+..++..+...| ++++|+.+|++++...         |....++..++.++...|++++|+.++++++.
T Consensus       492 ~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  561 (899)
T TIGR02917       492 LSIEPDFFPAAANLARIDIQEG-NPDDAIQRFEKVLTID---------PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE  561 (899)
T ss_pred             HhhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC---------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456778888999999999997 9999999999998752         34466788999999999999999999999987


Q ss_pred             hhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829          295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC  374 (728)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  374 (728)
                      ..     +...    ..+..++.+|...|++++|+.++++++..        .|....++..+|.++...|++++|+.+|
T Consensus       562 ~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~  624 (899)
T TIGR02917       562 LN-----PQEI----EPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLAAGDLNKAVSSF  624 (899)
T ss_pred             hC-----ccch----hHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            64     2222    34788999999999999999999999876        5666788999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 004829          375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIF  454 (728)
Q Consensus       375 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  454 (728)
                      ++++...+..        ..++..+|.++...|++++|+..|++++..      .|....++..++.++...|++++|+.
T Consensus       625 ~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~  690 (899)
T TIGR02917       625 KKLLALQPDS--------ALALLLLADAYAVMKNYAKAITSLKRALEL------KPDNTEAQIGLAQLLLAAKRTESAKK  690 (899)
T ss_pred             HHHHHhCCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999875432        235888999999999999999999998754      45566788999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829          455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL  534 (728)
Q Consensus       455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  534 (728)
                      +++.+...        .|.....+..+|.++...|++++|+..|++++.....      .    ..+..++.++...|++
T Consensus       691 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------~----~~~~~l~~~~~~~g~~  752 (899)
T TIGR02917       691 IAKSLQKQ--------HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS------S----QNAIKLHRALLASGNT  752 (899)
T ss_pred             HHHHHHhh--------CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------c----hHHHHHHHHHHHCCCH
Confidence            99988776        6666778889999999999999999999999987322      1    4677899999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc
Q 004829          535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR  614 (728)
Q Consensus       535 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  614 (728)
                      ++|+..+++++...+..       ..++..+|.+|...|++++|+.+|+++++.        .+....++..+|.++...
T Consensus       753 ~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~  817 (899)
T TIGR02917       753 AEAVKTLEAWLKTHPND-------AVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLEL  817 (899)
T ss_pred             HHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhc
Confidence            99999999999875443       567889999999999999999999999986        233457889999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 004829          615 YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAEL  694 (728)
Q Consensus       615 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~  694 (728)
                      |+ .+|+.++++++.+        .|+....+..+|.++...|++++|+.+|+++++.        .|....++..++.+
T Consensus       818 ~~-~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~  880 (899)
T TIGR02917       818 KD-PRALEYAEKALKL--------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALA  880 (899)
T ss_pred             Cc-HHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHH
Confidence            99 8899999999998        5566667889999999999999999999999984        35677889999999


Q ss_pred             HHHhCChhHHHHHHHHHHHh
Q 004829          695 LKEAGRVRNRKSRSLVTFLD  714 (728)
Q Consensus       695 ~~~~g~~~~A~~~~l~~ll~  714 (728)
                      +...|++++|+ ..++.+++
T Consensus       881 ~~~~g~~~~A~-~~~~~~~~  899 (899)
T TIGR02917       881 LLATGRKAEAR-KELDKLLN  899 (899)
T ss_pred             HHHcCCHHHHH-HHHHHHhC
Confidence            99999999999 88887763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.97  E-value=1.3e-28  Score=276.68  Aligned_cols=401  Identities=16%  Similarity=0.137  Sum_probs=298.5

Q ss_pred             ccCCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhH
Q 004829          205 QNGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNE  284 (728)
Q Consensus       205 ~~~~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  284 (728)
                      ...+..+.......|+ ...+..+|.++...| ++++|+..+.+++.+         +|....+++.+|.+|..+|++++
T Consensus       144 ~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l---------~p~~~~a~~~~a~a~~~lg~~~e  212 (615)
T TIGR00990       144 NKAIKLYSKAIECKPD-PVYYSNRAACHNALG-DWEKVVEDTTAALEL---------DPDYSKALNRRANAYDGLGKYAD  212 (615)
T ss_pred             HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcCCHHH
Confidence            3444445555555565 568999999999997 999999999999986         25567889999999999999999


Q ss_pred             HHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------HHc--------
Q 004829          285 AIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQR-------------QVL--------  343 (728)
Q Consensus       285 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------~~~--------  343 (728)
                      |+..|..++.+..    .....  ......  ..+.     ..+...+..++....             ..+        
T Consensus       213 A~~~~~~~~~~~~----~~~~~--~~~~~~--~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (615)
T TIGR00990       213 ALLDLTASCIIDG----FRNEQ--SAQAVE--RLLK-----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG  279 (615)
T ss_pred             HHHHHHHHHHhCC----CccHH--HHHHHH--HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence            9999987654421    11100  000000  0000     011111111111000             000        


Q ss_pred             ----CCCChHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829          344 ----GETDHRVGETCRYVAEAH---VQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY  416 (728)
Q Consensus       344 ----~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~  416 (728)
                          ...++.....+..++..+   ...++|++|+.+|++++....     ..+..+.++..+|.++...|++++|+..|
T Consensus       280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~  354 (615)
T TIGR00990       280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKCLKGKHLEALADL  354 (615)
T ss_pred             hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                000222233334444333   234789999999999987641     12344567999999999999999999999


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHH
Q 004829          417 VLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKS  496 (728)
Q Consensus       417 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  496 (728)
                      ++++.+      .|....++..+|.++...|++++|+.+|++++++        .|....++..+|.++...|++++|+.
T Consensus       355 ~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~  420 (615)
T TIGR00990       355 SKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGK  420 (615)
T ss_pred             HHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999866      5677889999999999999999999999999998        77778899999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 004829          497 YCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS  576 (728)
Q Consensus       497 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  576 (728)
                      +|++++.+         .|.....+..+|.++..+|++++|+..|++++...+..       ..++..+|.++..+|+++
T Consensus       421 ~~~kal~l---------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~  484 (615)
T TIGR00990       421 DYQKSIDL---------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------PDVYNYYGELLLDQNKFD  484 (615)
T ss_pred             HHHHHHHc---------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHccCHH
Confidence            99999998         34456778999999999999999999999999886654       567889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004829          577 DSYNTLKSAISKFRTSGEKKSALFGIALNQMGL-ACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA  655 (728)
Q Consensus       577 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~  655 (728)
                      +|+..|++++.+........ .. ...+...+. ++...|++++|+.+|++++.+        +|+...++..+|.++..
T Consensus       485 ~A~~~~~~Al~l~p~~~~~~-~~-~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~  554 (615)
T TIGR00990       485 EAIEKFDTAIELEKETKPMY-MN-VLPLINKALALFQWKQDFIEAENLCEKALII--------DPECDIAVATMAQLLLQ  554 (615)
T ss_pred             HHHHHHHHHHhcCCcccccc-cc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHH
Confidence            99999999998744322111 11 122333333 344479999999999999998        77777789999999999


Q ss_pred             cCChHHHHHHHHHHHHHHH
Q 004829          656 MGRIDDAIEILEYVVGMRE  674 (728)
Q Consensus       656 ~g~~~~A~~~~~~al~~~~  674 (728)
                      +|++++|+.+|++++++.+
T Consensus       555 ~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       555 QGDVDEALKLFERAAELAR  573 (615)
T ss_pred             ccCHHHHHHHHHHHHHHhc
Confidence            9999999999999999764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.6e-28  Score=257.94  Aligned_cols=454  Identities=18%  Similarity=0.196  Sum_probs=359.7

Q ss_pred             CccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHH
Q 004829          208 AEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIP  287 (728)
Q Consensus       208 ~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  287 (728)
                      ...+......++..+.++..++..++..| +|+.++.++..|+...      ...+..+..++.+|.+|..+|+|++|..
T Consensus       256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~  328 (1018)
T KOG2002|consen  256 VQLLQRAYKENNENPVALNHLANHFYFKK-DYERVWHLAEHAIKNT------ENKSIKAESFYQLGRSYHAQGDFEKAFK  328 (1018)
T ss_pred             HHHHHHHHhhcCCCcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            33455566678899999999999999997 9999999999998863      3335668889999999999999999999


Q ss_pred             HHHHhhhhhhhhcCCch-hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC-
Q 004829          288 VLERSVEIPVLEDGQDH-ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL-  365 (728)
Q Consensus       288 ~~~~al~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-  365 (728)
                      +|.+++...     +++ ..    .++.+|..|...|+++.|+.+|++++..        .|....+...||.+|...+ 
T Consensus       329 yY~~s~k~~-----~d~~~l----~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~  391 (1018)
T KOG2002|consen  329 YYMESLKAD-----NDNFVL----PLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAK  391 (1018)
T ss_pred             HHHHHHccC-----CCCccc----cccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhh
Confidence            999999865     222 23    3899999999999999999999999998        7888899999999998876 


Q ss_pred             ---CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004829          366 ---QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDA  442 (728)
Q Consensus       366 ---~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  442 (728)
                         ..+.|..++.+++...+..        ..+|..++.++....-+. ++.+|..|+.++...... --..+++++|..
T Consensus       392 ~~~~~d~a~~~l~K~~~~~~~d--------~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~-ip~E~LNNvasl  461 (1018)
T KOG2002|consen  392 KQEKRDKASNVLGKVLEQTPVD--------SEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQ-IPPEVLNNVASL  461 (1018)
T ss_pred             hhHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCC-CCHHHHHhHHHH
Confidence               5677788888877665332        456888888877655554 499999999887766655 556789999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHH
Q 004829          443 YLSLARFDEAIFSYHKALTAFKSAKGENH--PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASG  520 (728)
Q Consensus       443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  520 (728)
                      ++..|.+.+|..+|..|+..+......+.  .......+++|.++..+++++.|.+.|...+..         +|....+
T Consensus       462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---------hp~YId~  532 (1018)
T KOG2002|consen  462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---------HPGYIDA  532 (1018)
T ss_pred             HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------CchhHHH
Confidence            99999999999999999998654332222  233557899999999999999999999999988         6778899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-----------------------------cHHHHHHHHHHHHHH
Q 004829          521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-----------------------------TIAGIEAQMGVMYYM  571 (728)
Q Consensus       521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------------~~~~~~~~la~~~~~  571 (728)
                      +..+|.+....+...+|...+..++.+....+....                             .-+.++..||.+|+.
T Consensus       533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~  612 (1018)
T KOG2002|consen  533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ  612 (1018)
T ss_pred             HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence            999998888889999999999988876554422111                             112334456666653


Q ss_pred             c-----CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829          572 T-----GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY  646 (728)
Q Consensus       572 ~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  646 (728)
                      .     .+.+.+...+.+|++++.+.... +|....+-+.+|.++...|++.+|...|.++.+-.        .+...+|
T Consensus       613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--------~~~~dv~  683 (1018)
T KOG2002|consen  613 ALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--------SDFEDVW  683 (1018)
T ss_pred             HhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--------hhCCcee
Confidence            2     23345666666666665554333 34457788999999999999999999999998873        2345589


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829          647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      .+||.||..+|+|..|++.|+.++..+.      ..+...++..||.+|...|++.+|. ..+..++...|.+.
T Consensus       684 lNlah~~~e~~qy~~AIqmYe~~lkkf~------~~~~~~vl~~Lara~y~~~~~~eak-~~ll~a~~~~p~~~  750 (1018)
T KOG2002|consen  684 LNLAHCYVEQGQYRLAIQMYENCLKKFY------KKNRSEVLHYLARAWYEAGKLQEAK-EALLKARHLAPSNT  750 (1018)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHhc------ccCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCCccc
Confidence            9999999999999999999999998652      2345678889999999999999999 87777777777653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=1e-27  Score=286.47  Aligned_cols=423  Identities=14%  Similarity=0.063  Sum_probs=318.1

Q ss_pred             HcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh-------------hc
Q 004829          234 SSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL-------------ED  300 (728)
Q Consensus       234 ~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------~~  300 (728)
                      ..| ++++|+..+++++...         |....++..+|.+++..|++++|+..+++++.....             ..
T Consensus       159 ~~g-~~~~A~~~L~~ll~~~---------P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~  228 (1157)
T PRK11447        159 LPA-QRPEAINQLQRLNADY---------PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDM  228 (1157)
T ss_pred             CCc-cHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhcc
Confidence            345 8999999999988752         444667888999999999999999999987653210             00


Q ss_pred             C----------------CchhH-hHHH---------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          301 G----------------QDHAL-AKFA---------------GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH  348 (728)
Q Consensus       301 ~----------------~~~~~-~~~~---------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  348 (728)
                      .                +.... ....               ....+|.++...|++++|+..|+++++.        .|
T Consensus       229 ~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--------~P  300 (1157)
T PRK11447        229 PVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--------NP  300 (1157)
T ss_pred             CCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CC
Confidence            0                00000 0000               0124488899999999999999999998        78


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI------EEAADRRLMGLICDSKGDYEAALEHYVLASMS  422 (728)
Q Consensus       349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~  422 (728)
                      ....++..+|.+|...|++++|+.+|++++++.+........      ........+|.++...|++++|+..|++++.+
T Consensus       301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~  380 (1157)
T PRK11447        301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV  380 (1157)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            888999999999999999999999999999887654321100      01112345688899999999999999999876


Q ss_pred             HHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh----------cCCCCHH-------------------
Q 004829          423 MAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA----------KGENHPA-------------------  473 (728)
Q Consensus       423 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~-------------------  473 (728)
                            .|....++..+|.++...|++++|+.+|++++++....          +....+.                   
T Consensus       381 ------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~  454 (1157)
T PRK11447        381 ------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD  454 (1157)
T ss_pred             ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence                  45666789999999999999999999999999762110          0000000                   


Q ss_pred             -----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          474 -----VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY  548 (728)
Q Consensus       474 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  548 (728)
                           ....+..+|.++...|++++|+.+|++++++.         |....++..+|.+|...|++++|+..|+++++..
T Consensus       455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~  525 (1157)
T PRK11447        455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK  525 (1157)
T ss_pred             HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                 01123346677778899999999999999883         3345678999999999999999999999998765


Q ss_pred             hcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------------HHHHH
Q 004829          549 GKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAI-------------------------------------SKFRT  591 (728)
Q Consensus       549 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------------~~~~~  591 (728)
                      +..       ...++.++.++...+++++|+..++++.                                     .+++.
T Consensus       526 P~~-------~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~  598 (1157)
T PRK11447        526 PND-------PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ  598 (1157)
T ss_pred             CCC-------HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            543       2344555666666666666666655421                                     11111


Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                           .+.....+..+|.++...|++++|+..|++++..        .|+...++..++.+|...|++++|+.+|++++.
T Consensus       599 -----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        599 -----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             -----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence                 1112346788999999999999999999999998        788888999999999999999999999998876


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          672 MREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       672 ~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                              ..|+...++..+|.++..+|++++|+ ..++.++...+.
T Consensus       666 --------~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~~~~~  703 (1157)
T PRK11447        666 --------TANDSLNTQRRVALAWAALGDTAAAQ-RTFNRLIPQAKS  703 (1157)
T ss_pred             --------cCCCChHHHHHHHHHHHhCCCHHHHH-HHHHHHhhhCcc
Confidence                    34666778888999999999999999 888888876544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=9.5e-28  Score=286.83  Aligned_cols=418  Identities=14%  Similarity=0.126  Sum_probs=306.5

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchh-
Q 004829          227 KQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA-  305 (728)
Q Consensus       227 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-  305 (728)
                      .+|..++..| ++++|+..|++++...         |....++..+|.+|...|++++|+.+|++++++.+........ 
T Consensus       274 ~~G~~~~~~g-~~~~A~~~l~~aL~~~---------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~  343 (1157)
T PRK11447        274 AQGLAAVDSG-QGGKAIPELQQAVRAN---------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE  343 (1157)
T ss_pred             HHHHHHHHCC-CHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence            4478888897 9999999999999862         4456779999999999999999999999999875321111000 


Q ss_pred             ----HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829          306 ----LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH  381 (728)
Q Consensus       306 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  381 (728)
                          .........+|.++...|++++|+.+|++++.+        +|....++..+|.++...|++++|+.+|++++++.
T Consensus       344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~  415 (1157)
T PRK11447        344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD  415 (1157)
T ss_pred             HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence                001223456788999999999999999999998        67778899999999999999999999999999886


Q ss_pred             HHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829          382 RENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG---HELDVASIDCSIGDAYLSLARFDEAIFSYHK  458 (728)
Q Consensus       382 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  458 (728)
                      +...        .++..++.++. .+++++|+.++...........   ........+..+|.++...|++++|+..|++
T Consensus       416 p~~~--------~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~  486 (1157)
T PRK11447        416 PGNT--------NAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ  486 (1157)
T ss_pred             CCCH--------HHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5432        24566666664 3567777776654321110000   0011123456677777778888888888888


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829          459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV  538 (728)
Q Consensus       459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  538 (728)
                      ++++        .|....+++.+|.+|...|++++|+..+++++....         .....++.++.++...+++++|+
T Consensus       487 Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P---------~~~~~~~a~al~l~~~~~~~~Al  549 (1157)
T PRK11447        487 RLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP---------NDPEQVYAYGLYLSGSDRDRAAL  549 (1157)
T ss_pred             HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            7777        666667777788888888888888888877776521         12233444444455555555555


Q ss_pred             HHHHHH-------------------------------------HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829          539 KLLNKA-------------------------------------LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNT  581 (728)
Q Consensus       539 ~~~~~a-------------------------------------l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  581 (728)
                      .+++++                                     +.++...+.    ...++..+|.++...|++++|+.+
T Consensus       550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~----~~~~~~~La~~~~~~g~~~~A~~~  625 (1157)
T PRK11447        550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP----STRIDLTLADWAQQRGDYAAARAA  625 (1157)
T ss_pred             HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC----CchHHHHHHHHHHHcCCHHHHHHH
Confidence            444331                                     111111111    134567899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004829          582 LKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD  661 (728)
Q Consensus       582 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~  661 (728)
                      |+++++.        .+....++..++.+|...|++++|+..|++++..        .|+...++..+|.++..+|++++
T Consensus       626 y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~e  689 (1157)
T PRK11447        626 YQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAA  689 (1157)
T ss_pred             HHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHH
Confidence            9999987        3334678999999999999999999999998876        66667788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829          662 AIEILEYVVGMREEKLGTANP---DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD  714 (728)
Q Consensus       662 A~~~~~~al~~~~~~~~~~~p---~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~  714 (728)
                      |+.+|++++...     +.+|   ....++..+|.++...|++++|+ ..++.++.
T Consensus       690 A~~~~~~al~~~-----~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~y~~Al~  739 (1157)
T PRK11447        690 AQRTFNRLIPQA-----KSQPPSMESALVLRDAARFEAQTGQPQQAL-ETYKDAMV  739 (1157)
T ss_pred             HHHHHHHHhhhC-----ccCCcchhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence            999999998753     1222   24566778899999999999999 77777764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.97  E-value=2.9e-27  Score=246.59  Aligned_cols=295  Identities=20%  Similarity=0.283  Sum_probs=274.3

Q ss_pred             HhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          424 AANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALK  503 (728)
Q Consensus       424 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (728)
                      ......|....+...++..|..+|+|+.|+..++.++++..+..|.+++.....+..+|.+|..++++.+|+..|++|+.
T Consensus       190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~  269 (508)
T KOG1840|consen  190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT  269 (508)
T ss_pred             hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34456788888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829          504 IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTL  582 (728)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~  582 (728)
                      +.+... |.+++..+.++.+||.+|...|++++|..++++|++|.....+..+ .++..+.+++.++...+++++|..++
T Consensus       270 i~e~~~-G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~  348 (508)
T KOG1840|consen  270 IREEVF-GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL  348 (508)
T ss_pred             HHHHhc-CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            999877 7889999999999999999999999999999999999998666544 67778899999999999999999999


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004829          583 KSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDA  662 (728)
Q Consensus       583 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A  662 (728)
                      +++++++....+..++..+..+.+||.+|..+|++++|.++|++|+.+.++..+..++.....+.+||..|.+.+++.+|
T Consensus       349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a  428 (508)
T KOG1840|consen  349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA  428 (508)
T ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence            99999999888777878899999999999999999999999999999999999888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          663 IEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       663 ~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                      ...|.++..+. ...|++||++...+.+|+.+|..+|++++|+ ++.+.++........
T Consensus       429 ~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~-~~~~~~~~~~~~~~~  485 (508)
T KOG1840|consen  429 EQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAE-ELEEKVLNAREQRLG  485 (508)
T ss_pred             HHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHHHcCC
Confidence            99999999999 9999999999999999999999999999999 988888866554433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.1e-27  Score=231.11  Aligned_cols=398  Identities=16%  Similarity=0.153  Sum_probs=310.7

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829          220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE  299 (728)
Q Consensus       220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  299 (728)
                      ..+..+...|+.++..| +|++||.+|.+|+.+.         |+....|.+++.||...|+|++.++...+++++.   
T Consensus       113 k~A~~lK~~GN~~f~~k-kY~eAIkyY~~AI~l~---------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~---  179 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNK-KYDEAIKYYTQAIELC---------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN---  179 (606)
T ss_pred             HHHHHHHhhhhhhhhcc-cHHHHHHHHHHHHhcC---------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence            46778999999999997 9999999999999974         2235569999999999999999999999999986   


Q ss_pred             cCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHH------------------HHHHH-----HHHHcCC-CChHH-----
Q 004829          300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYT------------------AGLEI-----QRQVLGE-TDHRV-----  350 (728)
Q Consensus       300 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~~-----~~~~~~~-~~~~~-----  350 (728)
                        +++    ..++++.+.++..+|++.+|+....                  +.|..     ....++. ..|..     
T Consensus       180 --P~Y----~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f  253 (606)
T KOG0547|consen  180 --PDY----VKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF  253 (606)
T ss_pred             --cHH----HHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence              333    4569999999999999999875432                  22211     1112221 11111     


Q ss_pred             HHHHH--------------------HHHHH--HHHhC---CHHHHHHHHHHHHHHHHHcCCC-----CcHHHHHHHHHHH
Q 004829          351 GETCR--------------------YVAEA--HVQSL---QFDEAEKICQMALDIHRENTSP-----ASIEEAADRRLMG  400 (728)
Q Consensus       351 ~~~~~--------------------~la~~--~~~~g---~~~~A~~~~~~al~~~~~~~~~-----~~~~~a~~~~~lg  400 (728)
                      ...|+                    .+...  +...+   .|..|...+.+...........     ..-..+.++...|
T Consensus       254 i~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g  333 (606)
T KOG0547|consen  254 IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG  333 (606)
T ss_pred             HHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence            11111                    01111  11112   4666666666555443332221     1233467788899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004829          401 LICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR  480 (728)
Q Consensus       401 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  480 (728)
                      ..++..|++-.|...|..++.+      ++.....|..+|.+|....+.++....|.+|..+        +|....+|+.
T Consensus       334 tF~fL~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyH  399 (606)
T KOG0547|consen  334 TFHFLKGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYH  399 (606)
T ss_pred             hhhhhcCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHh
Confidence            9999999999999999999876      4555556899999999999999999999999999        8999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829          481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG  560 (728)
Q Consensus       481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  560 (728)
                      .|++++-+++|++|+..|++++.+         .|..+..+..++.+.+++++++++...|+.+...++..       +.
T Consensus       400 RgQm~flL~q~e~A~aDF~Kai~L---------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~-------~E  463 (606)
T KOG0547|consen  400 RGQMRFLLQQYEEAIADFQKAISL---------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC-------PE  463 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc---------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------ch
Confidence            999999999999999999999999         67788999999999999999999999999999998887       46


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACV-QRYTINEAADLFEEARTILEKEYGPYH  639 (728)
Q Consensus       561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~  639 (728)
                      ++...|.++..+++|++|++.|..|+++-.......  ..+..+...|.+.. -.+++..|+.++++|+++        +
T Consensus       464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~--v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------D  533 (606)
T KOG0547|consen  464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII--VNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------D  533 (606)
T ss_pred             HHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc--ccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------C
Confidence            788899999999999999999999999854321110  01223333333332 247999999999999999        9


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829          640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK  676 (728)
Q Consensus       640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~  676 (728)
                      |..-.++..||.+..++|+.++|+++|++++.+.+..
T Consensus       534 pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~  570 (606)
T KOG0547|consen  534 PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE  570 (606)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999987653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.9e-25  Score=235.07  Aligned_cols=434  Identities=14%  Similarity=0.170  Sum_probs=353.4

Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHH
Q 004829          210 DPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVL  289 (728)
Q Consensus       210 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  289 (728)
                      .|.-....+|.....|+..|...+..| +|..|+.+|.+++.+.+...   ++     ....+|.|++.+|+.+.|+..|
T Consensus       152 ~F~~Vl~~sp~Nil~LlGkA~i~ynkk-dY~~al~yyk~al~inp~~~---aD-----~rIgig~Cf~kl~~~~~a~~a~  222 (1018)
T KOG2002|consen  152 QFHFVLKQSPDNILALLGKARIAYNKK-DYRGALKYYKKALRINPACK---AD-----VRIGIGHCFWKLGMSEKALLAF  222 (1018)
T ss_pred             HHHHHHhhCCcchHHHHHHHHHHhccc-cHHHHHHHHHHHHhcCcccC---CC-----ccchhhhHHHhccchhhHHHHH
Confidence            455566788999999999999999997 99999999999998765432   22     2446799999999999999999


Q ss_pred             HHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829          290 ERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLG---QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQ  366 (728)
Q Consensus       290 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  366 (728)
                      ++++++.     +.    .+.++..||.+-....   .+..+...+.++...        .+..+.++..|+..|+..|+
T Consensus       223 ~ralqLd-----p~----~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--------n~~nP~~l~~LAn~fyfK~d  285 (1018)
T KOG2002|consen  223 ERALQLD-----PT----CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--------NNENPVALNHLANHFYFKKD  285 (1018)
T ss_pred             HHHHhcC-----hh----hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHhhccc
Confidence            9999986     32    3345667776665544   456666777766666        66777899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 004829          367 FDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSL  446 (728)
Q Consensus       367 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  446 (728)
                      |..+..+...++....     .....+..++.+|..|..+|+|++|..+|.+++...     +......++.+|.+|+..
T Consensus       286 y~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~~~l~~~GlgQm~i~~  355 (1018)
T KOG2002|consen  286 YERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDNFVLPLVGLGQMYIKR  355 (1018)
T ss_pred             HHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCCccccccchhHHHHHh
Confidence            9999999998886542     234556789999999999999999999999987542     122466788999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829          447 ARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG----KLRDSKSYCENALKIYGKPNHGIPSEEIASGLI  522 (728)
Q Consensus       447 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  522 (728)
                      |+++.|+.+|++++..        .|....++..||.+|...+    ..+.|..++.+++..         .+....+|.
T Consensus       356 ~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---------~~~d~~a~l  418 (1018)
T KOG2002|consen  356 GDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ---------TPVDSEAWL  418 (1018)
T ss_pred             chHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---------ccccHHHHH
Confidence            9999999999999998        8888899999999999886    567788888888777         345678999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc--HHH
Q 004829          523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS--ALF  600 (728)
Q Consensus       523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~  600 (728)
                      .++.++....-+. ++.+|..|+.++......  .-..+++++|..++..|++.+|...|.+|+..+........  ...
T Consensus       419 ~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~  495 (1018)
T KOG2002|consen  419 ELAQLLEQTDPWA-SLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN  495 (1018)
T ss_pred             HHHHHHHhcChHH-HHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence            9999988765554 499999999888776333  33678899999999999999999999999998553322211  223


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA  680 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  680 (728)
                      ....+++|.++...++++.|.+.|...+..        ||....++..||......+...+|..++..++.+.       
T Consensus       496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-------  560 (1018)
T KOG2002|consen  496 LTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-------  560 (1018)
T ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-------
Confidence            456899999999999999999999999998        99999999999988888999999999999999853       


Q ss_pred             ChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829          681 NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN  716 (728)
Q Consensus       681 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~  716 (728)
                       ...+.++..+|.++.....+..|. +-++..+...
T Consensus       561 -~~np~arsl~G~~~l~k~~~~~a~-k~f~~i~~~~  594 (1018)
T KOG2002|consen  561 -SSNPNARSLLGNLHLKKSEWKPAK-KKFETILKKT  594 (1018)
T ss_pred             -cCCcHHHHHHHHHHHhhhhhcccc-cHHHHHHhhh
Confidence             445567778899999999999998 6556555443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.95  E-value=8.1e-25  Score=244.89  Aligned_cols=362  Identities=14%  Similarity=0.029  Sum_probs=281.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH  348 (728)
Q Consensus       269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  348 (728)
                      +...+..+...|++++|+..++.++...     +.++..    ++.+|.+....|++++|+..|++++..        +|
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----p~~~~~----l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P  107 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTA-----KNGRDL----LRRWVISPLASSQPDAVLQVVNKLLAV--------NV  107 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhC-----CCchhH----HHHHhhhHhhcCCHHHHHHHHHHHHHh--------CC
Confidence            4445777888899999999999888765     555443    888888888999999999999999988        78


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 004829          349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH  428 (728)
Q Consensus       349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  428 (728)
                      ....++..+|.++...|++++|+..|++++.+.+..        ..++..++.++...|++++|+..+.+++..      
T Consensus       108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~--------~~a~~~la~~l~~~g~~~eA~~~~~~~~~~------  173 (656)
T PRK15174        108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN--------SQIFALHLRTLVLMDKELQAISLARTQAQE------  173 (656)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHCCChHHHHHHHHHHHHh------
Confidence            888889999999999999999999999999876543        235778899999999999999988866543      


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      .|....++..++ .+...|++++|+..+++++...       .+........++.++...|++++|+..|++++...   
T Consensus       174 ~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---  242 (656)
T PRK15174        174 VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---  242 (656)
T ss_pred             CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence            222333444443 4788899999999988887651       11222334566788889999999999999998872   


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          509 NHGIPSEEIASGLIDIAAIYQSMNELEQ----AVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS  584 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  584 (728)
                            |....++..+|.++...|++++    |+..|++++.+.+..       ..++..+|.++..+|++++|+.++++
T Consensus       243 ------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~  309 (656)
T PRK15174        243 ------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-------VRIVTLYADALIRTGQNEKAIPLLQQ  309 (656)
T ss_pred             ------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                  3346778889999999999885    788999998876544       56778899999999999999999999


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004829          585 AISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE  664 (728)
Q Consensus       585 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~  664 (728)
                      ++.+        .+....++..+|.++...|++++|+..|++++..        +|.....+..+|.++...|++++|+.
T Consensus       310 al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~  373 (656)
T PRK15174        310 SLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAES  373 (656)
T ss_pred             HHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHH
Confidence            9886        2334567888999999999999999999998887        66666666777889999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHH
Q 004829          665 ILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNR  704 (728)
Q Consensus       665 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A  704 (728)
                      .|+++++......   .+...++...+...+...+...+.
T Consensus       374 ~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~  410 (656)
T PRK15174        374 VFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPER  410 (656)
T ss_pred             HHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccch
Confidence            9999998754432   233445666666666666655544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.95  E-value=4.5e-25  Score=246.93  Aligned_cols=339  Identities=12%  Similarity=0.079  Sum_probs=290.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE  391 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  391 (728)
                      +...+..+...|++++|+..++..+..        .|....++..+|.+....|++++|+..|++++.+.|...      
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------  110 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------  110 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------
Confidence            456677788899999999999999988        788889999999999999999999999999999877653      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                        .++..+|.++...|++++|+..|++++.+      .|....++..++.++...|++++|+..+++++..        .
T Consensus       111 --~a~~~la~~l~~~g~~~~Ai~~l~~Al~l------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--------~  174 (656)
T PRK15174        111 --EDVLLVASVLLKSKQYATVADLAEQAWLA------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--------V  174 (656)
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------C
Confidence              35889999999999999999999999876      5667788999999999999999999999988776        4


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      |.....+..++ .+...|++++|+..+++++.....        ........++.++...|++++|+..|++++...+..
T Consensus       175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~--------~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~  245 (656)
T PRK15174        175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFAL--------ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG  245 (656)
T ss_pred             CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC--------cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            44455555554 478899999999999998776311        112234567888999999999999999999875443


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          552 PGQQSTIAGIEAQMGVMYYMTGNYSD----SYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA  627 (728)
Q Consensus       552 ~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  627 (728)
                             ..++..+|.+|...|++++    |+..|++++.+        .+....++..+|.++...|++++|+.+|+++
T Consensus       246 -------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a  310 (656)
T PRK15174        246 -------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQS  310 (656)
T ss_pred             -------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                   5677899999999999996    89999999987        3345688999999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHH
Q 004829          628 RTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSR  707 (728)
Q Consensus       628 l~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~  707 (728)
                      +.+        +|+...++..+|.+|...|++++|+..|++++..        +|.....+..++.++...|++++|+ .
T Consensus       311 l~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~-~  373 (656)
T PRK15174        311 LAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAE-S  373 (656)
T ss_pred             HHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHH-H
Confidence            998        7788889999999999999999999999999883        4666667777899999999999999 9


Q ss_pred             HHHHHHhhcccccc
Q 004829          708 SLVTFLDSNSQNLK  721 (728)
Q Consensus       708 ~l~~ll~~~~~~~~  721 (728)
                      .++.++..+|....
T Consensus       374 ~l~~al~~~P~~~~  387 (656)
T PRK15174        374 VFEHYIQARASHLP  387 (656)
T ss_pred             HHHHHHHhChhhch
Confidence            99999999888653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.95  E-value=7.7e-24  Score=242.20  Aligned_cols=438  Identities=11%  Similarity=-0.011  Sum_probs=329.2

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhh
Q 004829          216 LGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI  295 (728)
Q Consensus       216 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  295 (728)
                      ...|.....+.....++...| ++++|+..|.++...         .+..+.++..+|.++...|++++|+.+|++++++
T Consensus         9 ~~~~~~~~~~~d~~~ia~~~g-~~~~A~~~~~~~~~~---------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~   78 (765)
T PRK10049          9 LKSALSNNQIADWLQIALWAG-QDAEVITVYNRYRVH---------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL   78 (765)
T ss_pred             hccCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345556666677777888887 999999999888753         1334666889999999999999999999999987


Q ss_pred             hhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829          296 PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQ  375 (728)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  375 (728)
                      .     +..+.    ++..++.++...|++++|+..+++++..        .|.... +..+|.++...|++++|+..++
T Consensus        79 ~-----P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~  140 (765)
T PRK10049         79 E-----PQNDD----YQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMT  140 (765)
T ss_pred             C-----CCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence            5     44433    3789999999999999999999999998        677777 9999999999999999999999


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH-----HhCCH-
Q 004829          376 MALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYL-----SLARF-  449 (728)
Q Consensus       376 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~-  449 (728)
                      +++.+.|...        .++..++.++...|..+.|+..++++.... .. ...........+..++.     ..+++ 
T Consensus       141 ~al~~~P~~~--------~~~~~la~~l~~~~~~e~Al~~l~~~~~~p-~~-~~~l~~~~~~~~~r~~~~~~~~~~~r~~  210 (765)
T PRK10049        141 QALPRAPQTQ--------QYPTEYVQALRNNRLSAPALGAIDDANLTP-AE-KRDLEADAAAELVRLSFMPTRSEKERYA  210 (765)
T ss_pred             HHHHhCCCCH--------HHHHHHHHHHHHCCChHHHHHHHHhCCCCH-HH-HHHHHHHHHHHHHHhhcccccChhHHHH
Confidence            9999876542        346678999999999999999887654210 00 00000111122222222     22345 


Q ss_pred             --HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH
Q 004829          450 --DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAI  527 (728)
Q Consensus       450 --~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  527 (728)
                        ++|+..++.++...... ....+....+......++...|++++|+..|+++++...      ..|..+..  .+|.+
T Consensus       211 ~ad~Al~~~~~ll~~~~~~-p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~------~~P~~a~~--~la~~  281 (765)
T PRK10049        211 IADRALAQYDALEALWHDN-PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ------IIPPWAQR--WVASA  281 (765)
T ss_pred             HHHHHHHHHHHHHhhcccC-CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC------CCCHHHHH--HHHHH
Confidence              67888888887664322 112334444444423344677999999999999877621      12333333  36889


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------CCCCcHHH
Q 004829          528 YQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS-------GEKKSALF  600 (728)
Q Consensus       528 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~  600 (728)
                      |..+|++++|+.+|+++++..+..   ..........++.++..+|++++|+.+++++.......       ........
T Consensus       282 yl~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~  358 (765)
T PRK10049        282 YLKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW  358 (765)
T ss_pred             HHhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence            999999999999999988643221   11112344567778899999999999999988753210       00001123


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA  680 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  680 (728)
                      ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++.+        
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------  422 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------  422 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------
Confidence            457788999999999999999999999998        7888889999999999999999999999999994        


Q ss_pred             ChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829          681 NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       681 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      +|+...+++.+|.++..+|++++|. ..++.++...|++.
T Consensus       423 ~Pd~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd~~  461 (765)
T PRK10049        423 EPRNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQDP  461 (765)
T ss_pred             CCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCCCH
Confidence            4888889999999999999999999 99999999988764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8.6e-24  Score=208.53  Aligned_cols=389  Identities=18%  Similarity=0.143  Sum_probs=296.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE  345 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  345 (728)
                      +..+-+.|.-++..|+|++||.+|.+|+++.     ++.|..    |.+++.||...|+|++.++...+++++       
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epiF----YsNraAcY~~lgd~~~Vied~TkALEl-------  178 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPIF----YSNRAACYESLGDWEKVIEDCTKALEL-------  178 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCchh----hhhHHHHHHHHhhHHHHHHHHHHHhhc-------
Confidence            4446678999999999999999999999987     444443    899999999999999999999999999       


Q ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHH------------------HHHH---------HHHcCCCC--cHHHHHHH
Q 004829          346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQM------------------ALDI---------HRENTSPA--SIEEAADR  396 (728)
Q Consensus       346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------------al~~---------~~~~~~~~--~~~~a~~~  396 (728)
                       +|....+++..+.++..+|++++|+.-..-                  .|..         ...+..+.  .......|
T Consensus       179 -~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy  257 (606)
T KOG0547|consen  179 -NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY  257 (606)
T ss_pred             -CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence             899999999999999999999998764321                  1111         01011110  00001111


Q ss_pred             HH--------------------H--HHHHHHcC---CHHHHHHHHHHHHHHHHhcCC-------ChhHHHHHHHHHHHHH
Q 004829          397 RL--------------------M--GLICDSKG---DYEAALEHYVLASMSMAANGH-------ELDVASIDCSIGDAYL  444 (728)
Q Consensus       397 ~~--------------------l--g~~~~~~g---~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~la~~~~  444 (728)
                      +.                    +  +.-+...+   .|..|...+.+..........       -...+.++...|..++
T Consensus       258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f  337 (606)
T KOG0547|consen  258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF  337 (606)
T ss_pred             HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence            10                    0  01111111   455555555554433221111       1234778888999999


Q ss_pred             HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Q 004829          445 SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI  524 (728)
Q Consensus       445 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  524 (728)
                      ..|++-.|...|++++.+        +|.....|..+|.+|....+.++-...|.+|.++         +|..+.+|+..
T Consensus       338 L~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l---------dp~n~dvYyHR  400 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL---------DPENPDVYYHR  400 (606)
T ss_pred             hcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc---------CCCCCchhHhH
Confidence            999999999999999998        7777777999999999999999999999999998         45566789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Q 004829          525 AAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIAL  604 (728)
Q Consensus       525 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  604 (728)
                      |.+++-++++++|+.-|++++.+.+..       +..+..++.+.+++++++++...|+.+...+        |..+.++
T Consensus       401 gQm~flL~q~e~A~aDF~Kai~L~pe~-------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~~Evy  465 (606)
T KOG0547|consen  401 GQMRFLLQQYEEAIADFQKAISLDPEN-------AYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNCPEVY  465 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCchHH
Confidence            999999999999999999999987766       5677889999999999999999999999874        3345788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 004829          605 NQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY-DAMGRIDDAIEILEYVVGMREEKLGTANPD  683 (728)
Q Consensus       605 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~p~  683 (728)
                      ...|.++..++++++|++.|..|+++-.....- +. .+..+.+-|.+. .-.+++..|+.++++|+++        +|.
T Consensus       466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpk  535 (606)
T KOG0547|consen  466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPK  535 (606)
T ss_pred             HHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------Cch
Confidence            899999999999999999999999983221100 00 122222222222 1248999999999999984        599


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829          684 VEDEKRRLAELLKEAGRVRNRKSRSLVTFLD  714 (728)
Q Consensus       684 ~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~  714 (728)
                      ...++..||.+..++|+.++|+ .+++....
T Consensus       536 ce~A~~tlaq~~lQ~~~i~eAi-elFEksa~  565 (606)
T KOG0547|consen  536 CEQAYETLAQFELQRGKIDEAI-ELFEKSAQ  565 (606)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHH
Confidence            9999999999999999999999 77776543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.93  E-value=2.3e-22  Score=229.71  Aligned_cols=447  Identities=12%  Similarity=0.013  Sum_probs=324.6

Q ss_pred             CCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHH
Q 004829          207 GAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAI  286 (728)
Q Consensus       207 ~~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  286 (728)
                      .++.+.....-+|+...+++.++..++..| ++++|+.++++++..         +|.....+..++.+    +++++|+
T Consensus        63 A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g-~~~~A~~~~~kAv~l---------dP~n~~~~~~La~i----~~~~kA~  128 (987)
T PRK09782         63 AIREFEYIHQQVPDNIPLTLYLAEAYRHFG-HDDRARLLLEDQLKR---------HPGDARLERSLAAI----PVEVKSV  128 (987)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhc---------CcccHHHHHHHHHh----ccChhHH
Confidence            345666777788988999999999999997 999999999999985         23334444445554    8899999


Q ss_pred             HHHHHhhhhhhhhcCCchhHh-------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          287 PVLERSVEIPVLEDGQDHALA-------------------------------KFAGCMQLGDTYAMLGQIENSILCYTAG  335 (728)
Q Consensus       287 ~~~~~al~~~~~~~~~~~~~~-------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a  335 (728)
                      ..|++++...+..........                               .....+.++.+|..+|++++|+..+.+.
T Consensus       129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L  208 (987)
T PRK09782        129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA  208 (987)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            999998877532111110000                               0112445588999999999999999887


Q ss_pred             HHHHH--------------HH---------cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC----
Q 004829          336 LEIQR--------------QV---------LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA----  388 (728)
Q Consensus       336 l~~~~--------------~~---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----  388 (728)
                      ++...              ..         ..+.-.....++..++..|...|+.++|...+++.-...+..+...    
T Consensus       209 ~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~  288 (987)
T PRK09782        209 RQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY  288 (987)
T ss_pred             HhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence            65410              00         0000012233445677778888888888877655322211100000    


Q ss_pred             -----------------------------------------------------c--------------------------
Q 004829          389 -----------------------------------------------------S--------------------------  389 (728)
Q Consensus       389 -----------------------------------------------------~--------------------------  389 (728)
                                                                           .                          
T Consensus       289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  368 (987)
T PRK09782        289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL  368 (987)
T ss_pred             HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence                                                                 0                          


Q ss_pred             ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HH-------Hhc----------------------
Q 004829          390 ----IEEAADRRLMGLICDSKGDYEAALEHYVLASM----------SM-------AAN----------------------  426 (728)
Q Consensus       390 ----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~----------~~-------~~~----------------------  426 (728)
                          +.....+..++......|++++|...|+++..          +.       ...                      
T Consensus       369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  448 (987)
T PRK09782        369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR  448 (987)
T ss_pred             HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence                00012234455666678888888888876643          11       000                      


Q ss_pred             --------------------CCChh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004829          427 --------------------GHELD--VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL  484 (728)
Q Consensus       427 --------------------~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  484 (728)
                                          +..|.  ...+++++|.++.. +++.+|+..|.+++..        .|.. .....+|.+
T Consensus       449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--------~Pd~-~~~L~lA~a  518 (987)
T PRK09782        449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--------QPDA-WQHRAVAYQ  518 (987)
T ss_pred             HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------CCch-HHHHHHHHH
Confidence                                01123  56678889988887 8999999999999887        4543 236667788


Q ss_pred             HHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 004829          485 YHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ  564 (728)
Q Consensus       485 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  564 (728)
                      +...|++++|+..|++++...      ..    ...+..+|.++...|++++|+.+|++++...+..       ...+..
T Consensus       519 l~~~Gr~eeAi~~~rka~~~~------p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-------~~l~~~  581 (987)
T PRK09782        519 AYQVEDYATALAAWQKISLHD------MS----NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-------NALYWW  581 (987)
T ss_pred             HHHCCCHHHHHHHHHHHhccC------CC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-------HHHHHH
Confidence            889999999999999875441      11    1236788999999999999999999998764322       334445


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004829          565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG  644 (728)
Q Consensus       565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  644 (728)
                      ++......|++++|+..|++++++        .+. ..++..+|.++.+.|++++|+..|++++.+        +|+...
T Consensus       582 La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~  644 (987)
T PRK09782        582 LHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSN  644 (987)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence            666666779999999999999987        233 578899999999999999999999999999        888889


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829          645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      ++.++|.++...|++++|+.+|++++++        +|+...++.++|.++..+|++++|+ ..++.+++..|...
T Consensus       645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~-~~l~~Al~l~P~~a  711 (987)
T PRK09782        645 YQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQ-HYARLVIDDIDNQA  711 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCCCCc
Confidence            9999999999999999999999999994        4888899999999999999999999 99999999988754

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.92  E-value=8.9e-24  Score=205.84  Aligned_cols=423  Identities=14%  Similarity=0.089  Sum_probs=235.1

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhc
Q 004829          221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLED  300 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  300 (728)
                      .-.+|+.++..|-.. +.+.+|+..|+-.++       ..-.|.....-.++|.++++..+|.+|+.+|+.++...+.  
T Consensus       200 tfsvl~nlaqqy~~n-dm~~ealntyeiivk-------nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps--  269 (840)
T KOG2003|consen  200 TFSVLFNLAQQYEAN-DMTAEALNTYEIIVK-------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS--  269 (840)
T ss_pred             hHHHHHHHHHHhhhh-HHHHHHhhhhhhhhc-------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc--
Confidence            356788899888777 378888888877664       3333444555668999999999999999999999976432  


Q ss_pred             CCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829          301 GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDI  380 (728)
Q Consensus       301 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  380 (728)
                        ......+.++.++|..+.+.|+|+.|+..|+.+++.        .|... +-++|..|++..|+-++-.+.|++.+.+
T Consensus       270 --ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~i  338 (840)
T KOG2003|consen  270 --INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNFI-AALNLIICAFAIGDAEKMKEAFQKLIDI  338 (840)
T ss_pred             --cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--------CccHH-hhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence              222446678999999999999999999999999988        56654 4456778888999999999999888765


Q ss_pred             HHHcC---------CCCcHHHH----------------------------------------------------------
Q 004829          381 HRENT---------SPASIEEA----------------------------------------------------------  393 (728)
Q Consensus       381 ~~~~~---------~~~~~~~a----------------------------------------------------------  393 (728)
                      -....         +++.....                                                          
T Consensus       339 p~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la  418 (840)
T KOG2003|consen  339 PGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELA  418 (840)
T ss_pred             CCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhh
Confidence            32111         11100000                                                          


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhcCCC
Q 004829          394 -ADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA--RFDEAIFSYHKALTAFKSAKGEN  470 (728)
Q Consensus       394 -~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~  470 (728)
                       ..-.+.+..+.+.|+++.|++.+.-.    .. .+......+-.+|..+++.+|  ++..|..+...++.+        
T Consensus       419 ~dlei~ka~~~lk~~d~~~aieilkv~----~~-kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------  485 (840)
T KOG2003|consen  419 IDLEINKAGELLKNGDIEGAIEILKVF----EK-KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------  485 (840)
T ss_pred             hhhhhhHHHHHHhccCHHHHHHHHHHH----Hh-ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------
Confidence             00112234556777777777665321    11 111111222233333333322  333444444444333        


Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      +...+.++.+.|.+-+..|++++|.+.|++++.-         +.....+++++|..+..+|+.++|+.+|-+.-.+...
T Consensus       486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n---------dasc~ealfniglt~e~~~~ldeald~f~klh~il~n  556 (840)
T KOG2003|consen  486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN---------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN  556 (840)
T ss_pred             cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh
Confidence            3333444444455555555555555555555433         2233445555555555555555555555554444443


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      .       +.++..++.+|..+.+..+|++++-++..+.        +....++..||.+|-+.|+..+|..++-.....
T Consensus       557 n-------~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksqafq~~ydsyry  621 (840)
T KOG2003|consen  557 N-------AEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY  621 (840)
T ss_pred             h-------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence            3       3444555555555555555555555544431        111234444555555555555555444444443


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004829          631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLV  710 (728)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~  710 (728)
                              .|...++..+||..|....-+++|+.+|+++.-+        .|........++.++.+.|+|..|. ..++
T Consensus       622 --------fp~nie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~-d~yk  684 (840)
T KOG2003|consen  622 --------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAF-DLYK  684 (840)
T ss_pred             --------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHH-HHHH
Confidence                    3444444444555555555555555555554432        2444444445555555555555555 4444


Q ss_pred             HHHhhccc
Q 004829          711 TFLDSNSQ  718 (728)
Q Consensus       711 ~ll~~~~~  718 (728)
                      ......|+
T Consensus       685 ~~hrkfpe  692 (840)
T KOG2003|consen  685 DIHRKFPE  692 (840)
T ss_pred             HHHHhCcc
Confidence            44444444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.92  E-value=6.1e-22  Score=226.63  Aligned_cols=402  Identities=13%  Similarity=0.011  Sum_probs=304.0

Q ss_pred             cccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004829          212 LAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLER  291 (728)
Q Consensus       212 ~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  291 (728)
                      ......+|..+..+..+|..+...| ++++|+.+|++++...         |....++..++.++...|++++|+..+++
T Consensus        39 ~~~~~~~~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~---------P~~~~a~~~la~~l~~~g~~~eA~~~l~~  108 (765)
T PRK10049         39 NRYRVHMQLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLE---------PQNDDYQRGLILTLADAGQYDEALVKAKQ  108 (765)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3334456778888999999999997 9999999999999862         33455677899999999999999999999


Q ss_pred             hhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHH
Q 004829          292 SVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAE  371 (728)
Q Consensus       292 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  371 (728)
                      ++...     +..+    . +..+|.++...|++++|+..++++++.        .|....++..++.++...+..++|+
T Consensus       109 ~l~~~-----P~~~----~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al  170 (765)
T PRK10049        109 LVSGA-----PDKA----N-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPAL  170 (765)
T ss_pred             HHHhC-----CCCH----H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHH
Confidence            99875     3332    3 778899999999999999999999999        7888888889999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHH
Q 004829          372 KICQMALDIHRENTSPASIEEAADRRLMGLICD-----SKGDY---EAALEHYVLASMSMAANGH-ELDVASIDCSIGDA  442 (728)
Q Consensus       372 ~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~-----~~g~~---~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~  442 (728)
                      ..++++.. .|....   .........+..+..     ..+++   ++|+..++.++........ .+....+.......
T Consensus       171 ~~l~~~~~-~p~~~~---~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~  246 (765)
T PRK10049        171 GAIDDANL-TPAEKR---DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA  246 (765)
T ss_pred             HHHHhCCC-CHHHHH---HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence            98887664 221100   000001112222222     22334   7788888887765433322 23334444442334


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829          443 YLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI  522 (728)
Q Consensus       443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  522 (728)
                      +...|++++|+..|++++..     +...|..+..  .+|.+|..+|++++|+.+|++++.....     ..........
T Consensus       247 Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~~p~-----~~~~~~~~~~  314 (765)
T PRK10049        247 LLARDRYKDVISEYQRLKAE-----GQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYHPET-----IADLSDEELA  314 (765)
T ss_pred             HHHhhhHHHHHHHHHHhhcc-----CCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhcCCC-----CCCCChHHHH
Confidence            46789999999999998875     1112444443  3689999999999999999998864211     1011134566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCC-------CC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829          523 DIAAIYQSMNELEQAVKLLNKALKIYGKTP-------GQ-QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE  594 (728)
Q Consensus       523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  594 (728)
                      .++.++...|++++|+.+++++....+...       .. ......++..++.++...|++++|+..+++++..      
T Consensus       315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~------  388 (765)
T PRK10049        315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN------  388 (765)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            777788999999999999999987754211       11 1123456678999999999999999999999887      


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          595 KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       595 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                        .|....++..+|.++...|++++|+..+++++.+        .|+...+++.+|.++...|++++|+..++++++..
T Consensus       389 --~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~  457 (765)
T PRK10049        389 --APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE  457 (765)
T ss_pred             --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence              3334679999999999999999999999999999        88888899999999999999999999999999853

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.91  E-value=2.3e-22  Score=194.12  Aligned_cols=329  Identities=16%  Similarity=0.163  Sum_probs=278.4

Q ss_pred             HHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHH
Q 004829          272 LAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVG  351 (728)
Q Consensus       272 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  351 (728)
                      -|.-+++.|++...+.+|+.|++.-     .+.......+|..||.+|+.+++|++|+++..--+.+.+.+  .+....+
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvG-----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEA   95 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVG-----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEA   95 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhc-----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccc
Confidence            4777899999999999999999764     44444455679999999999999999999988877776554  2233445


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCC--------------------HHH
Q 004829          352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGD--------------------YEA  411 (728)
Q Consensus       352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------------------~~~  411 (728)
                      .+.-+||..+...|.|++|+.++.+-+.+.++.++  ....+.+++++|.+|...|+                    ++.
T Consensus        96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgD--rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~  173 (639)
T KOG1130|consen   96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGD--RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN  173 (639)
T ss_pred             cccccccchhhhhcccchHHHHHHHHhHHHHHHhH--HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence            67788999999999999999999999999998874  45667889999999998775                    567


Q ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCh
Q 004829          412 ALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKL  491 (728)
Q Consensus       412 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  491 (728)
                      |.++|..-+.+....++......++-+||..|+.+|+|+.|+.+.+.-|.+.++.  ++....-.++.+||.+|..+|++
T Consensus       174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~sNlgN~hiflg~f  251 (639)
T KOG1130|consen  174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHSNLGNCHIFLGNF  251 (639)
T ss_pred             HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhcccchhhhhhccc
Confidence            7888888888888888888889999999999999999999999999999998877  45666778999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Q 004829          492 RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYM  571 (728)
Q Consensus       492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  571 (728)
                      +.|+++|+..+.+..++.   +....+...+.||..|.-..++++|+.|+++-+.|.+.. ++......+++.||..|..
T Consensus       252 e~A~ehYK~tl~LAielg---~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~~a  327 (639)
T KOG1130|consen  252 ELAIEHYKLTLNLAIELG---NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAFNA  327 (639)
T ss_pred             HhHHHHHHHHHHHHHHhc---chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHh
Confidence            999999999999887765   345577888999999999999999999999999998877 6666667888999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829          572 TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI  617 (728)
Q Consensus       572 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  617 (728)
                      .|..++|+.+.++.+++..+..+....  ..+..++...-...|..
T Consensus       328 lg~h~kAl~fae~hl~~s~ev~D~sge--lTar~Nlsdl~~~lG~~  371 (639)
T KOG1130|consen  328 LGEHRKALYFAELHLRSSLEVNDTSGE--LTARDNLSDLILELGQE  371 (639)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCcchh--hhhhhhhHHHHHHhCCC
Confidence            999999999999999999888776533  23455566555555543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.91  E-value=2e-22  Score=194.45  Aligned_cols=331  Identities=16%  Similarity=0.186  Sum_probs=281.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 004829          357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID  436 (728)
Q Consensus       357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  436 (728)
                      -|.-+++.|++...+.+|+.|++.-.+..    .....+|..||..|+.+++|++|+++...-+.+.+..++....+...
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvGTeDl----~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss   98 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVGTEDL----STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS   98 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhcchHH----HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence            35567889999999999999998754432    34456799999999999999999999988888888888888888899


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--------------------hHHHHH
Q 004829          437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK--------------------LRDSKS  496 (728)
Q Consensus       437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~  496 (728)
                      .+||.++...|.|++|+.++.+-|.+.++.  ++......++++||.+|...|+                    ++.|.+
T Consensus        99 gNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~  176 (639)
T KOG1130|consen   99 GNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK  176 (639)
T ss_pred             ccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence            999999999999999999999999998887  4566778999999999998875                    456777


Q ss_pred             HHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 004829          497 YCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS  576 (728)
Q Consensus       497 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  576 (728)
                      +|..-+++.++..   +......++.+||..|+.+|+|++|+..-+.-+.+.++. |+....-.++.++|.+|.-.|+++
T Consensus       177 fy~eNL~l~~~lg---Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~fe  252 (639)
T KOG1130|consen  177 FYMENLELSEKLG---DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGNFE  252 (639)
T ss_pred             HHHHHHHHHHHhh---hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcccH
Confidence            8888788777654   344567889999999999999999999999999998887 777777788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829          577 DSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       577 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~  656 (728)
                      .|+++|+.++.+..++++..  ..+...+.||..|.-..++++|+.|+++-+.|.+....  ......+++.||..|...
T Consensus       253 ~A~ehYK~tl~LAielg~r~--vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLgna~~al  328 (639)
T KOG1130|consen  253 LAIEHYKLTLNLAIELGNRT--VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLGNAFNAL  328 (639)
T ss_pred             hHHHHHHHHHHHHHHhcchh--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhh
Confidence            99999999999999988763  35788899999999999999999999999999887643  334567899999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhH
Q 004829          657 GRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRN  703 (728)
Q Consensus       657 g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~  703 (728)
                      |..++|+.+.++.+++..++-.+  .....+..+|..+....|..+.
T Consensus       329 g~h~kAl~fae~hl~~s~ev~D~--sgelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  329 GEHRKALYFAELHLRSSLEVNDT--SGELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCc--chhhhhhhhhHHHHHHhCCCcc
Confidence            99999999999999988777332  2245667778888787777554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.90  E-value=1.3e-19  Score=202.98  Aligned_cols=443  Identities=12%  Similarity=-0.014  Sum_probs=328.9

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHH
Q 004829          211 PLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLE  290 (728)
Q Consensus       211 ~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  290 (728)
                      +.....-.|..+...+..+...++.| ++..|+..++++++..         |........+..++...|++++|+.+++
T Consensus        23 ~~~~~~~~p~~~~~~y~~aii~~r~G-d~~~Al~~L~qaL~~~---------P~~~~av~dll~l~~~~G~~~~A~~~~e   92 (822)
T PRK14574         23 FISGFVVNPAMADTQYDSLIIRARAG-DTAPVLDYLQEESKAG---------PLQSGQVDDWLQIAGWAGRDQEVIDVYE   92 (822)
T ss_pred             HHcccccCccchhHHHHHHHHHHhCC-CHHHHHHHHHHHHhhC---------ccchhhHHHHHHHHHHcCCcHHHHHHHH
Confidence            33345567778889999999999998 9999999999999862         2222112267788888899999999999


Q ss_pred             HhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHH
Q 004829          291 RSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEA  370 (728)
Q Consensus       291 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  370 (728)
                      +++.-.     +..    ...+..+|.+|...|++++|+..|+++++.        +|....++..++.+|...++.++|
T Consensus        93 ka~~p~-----n~~----~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eA  155 (822)
T PRK14574         93 RYQSSM-----NIS----SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVV  155 (822)
T ss_pred             HhccCC-----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHH
Confidence            998311     111    123566688999999999999999999998        777788888999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHH
Q 004829          371 EKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD  450 (728)
Q Consensus       371 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  450 (728)
                      +..++++....+...         .+..++.++...++..+|+..|++++..      .|....++..+..++...|-..
T Consensus       156 l~~l~~l~~~dp~~~---------~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~  220 (822)
T PRK14574        156 LKQATELAERDPTVQ---------NYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVE  220 (822)
T ss_pred             HHHHHHhcccCcchH---------HHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcH
Confidence            999999987765421         1334455555577777799999988765      3333444444444444444333


Q ss_pred             HHHH-----------------------------------------HHHHHHHHHHHhcC------CCCHHHHHHHHHHHH
Q 004829          451 EAIF-----------------------------------------SYHKALTAFKSAKG------ENHPAVASVFVRLAD  483 (728)
Q Consensus       451 ~A~~-----------------------------------------~~~~al~~~~~~~~------~~~~~~~~~~~~la~  483 (728)
                      .|.+                                         ..++++..+...+.      +.++....+....-.
T Consensus       221 ~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~  300 (822)
T PRK14574        221 PALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG  300 (822)
T ss_pred             HHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence            3332                                         23334444443332      223344556667777


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 004829          484 LYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEA  563 (728)
Q Consensus       484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  563 (728)
                      ++...|++.+++..|+........      .|.  .+...+|..|...+++++|+.+|+.++.-.+..... +.......
T Consensus       301 aL~~r~r~~~vi~~y~~l~~~~~~------~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~-~~~~~~~~  371 (822)
T PRK14574        301 ALLVRHQTADLIKEYEAMEAEGYK------MPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRN-SDDLLDAD  371 (822)
T ss_pred             HHHHhhhHHHHHHHHHHhhhcCCC------CCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCC-CcchHHHH
Confidence            788899999999999876544212      232  356778999999999999999999987654322111 11122235


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHH----h---CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829          564 QMGVMYYMTGNYSDSYNTLKSAISKFRT----S---GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG  636 (728)
Q Consensus       564 ~la~~~~~~g~~~~A~~~~~~al~~~~~----~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  636 (728)
                      .|...|...++|++|..++++..+...-    .   ....++....+...++.++...|++.+|++.+++.+..      
T Consensus       372 ~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~------  445 (822)
T PRK14574        372 DLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST------  445 (822)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            6788899999999999999998873220    0   11234456688888999999999999999999999888      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829          637 PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN  716 (728)
Q Consensus       637 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~  716 (728)
                        .|....++..+|.++...|.+.+|...++.+..        .+|+...+...++.++..+|++++|. ..+..++...
T Consensus       446 --aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--------l~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~  514 (822)
T PRK14574        446 --APANQNLRIALASIYLARDLPRKAEQELKAVES--------LAPRSLILERAQAETAMALQEWHQME-LLTDDVISRS  514 (822)
T ss_pred             --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--------hCCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhC
Confidence              788888999999999999999999999988776        36888999999999999999999999 8889998888


Q ss_pred             ccccc
Q 004829          717 SQNLK  721 (728)
Q Consensus       717 ~~~~~  721 (728)
                      |+...
T Consensus       515 Pe~~~  519 (822)
T PRK14574        515 PEDIP  519 (822)
T ss_pred             CCchh
Confidence            87653

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.3e-22  Score=208.79  Aligned_cols=310  Identities=15%  Similarity=0.093  Sum_probs=248.3

Q ss_pred             HHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 004829          352 ETCRYVAEAHVQSL--QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE  429 (728)
Q Consensus       352 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  429 (728)
                      ..+..+|..|...-  +..+|+..|++.-...        .....++..+|..|+.+++|++|..+|+.+-++      .
T Consensus       318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~--------~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~------~  383 (638)
T KOG1126|consen  318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHH--------YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI------E  383 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhc--------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------c
Confidence            34455555554433  4567888887722221        112357889999999999999999999987654      2


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829          430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN  509 (728)
Q Consensus       430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  509 (728)
                      |....-.-....+++.+.+--+---+.+..++.        .|..+.+|..+|.+|..+++++.|+++|++|+++     
T Consensus       384 p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~--------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-----  450 (638)
T KOG1126|consen  384 PYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT--------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-----  450 (638)
T ss_pred             cccccchhHHHHHHHHHHhhHHHHHHHHHHHhh--------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----
Confidence            222222222233333333322222222333333        7788889999999999999999999999999999     


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF  589 (728)
Q Consensus       510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  589 (728)
                          +|..+.+|..+|.-+....+++.|..+|+.|+.+.++.       ..+|+.+|.+|.++++++.|.-+|++|+++ 
T Consensus       451 ----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-  518 (638)
T KOG1126|consen  451 ----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-  518 (638)
T ss_pred             ----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-------hHHHHhhhhheeccchhhHHHHHHHhhhcC-
Confidence                56678899999999999999999999999999877666       578999999999999999999999999998 


Q ss_pred             HHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          590 RTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV  669 (728)
Q Consensus       590 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a  669 (728)
                             .|....++..+|.++.+.|+.++|+.+|++|+.+        +|...-..+..|.++..++++++|+..+++.
T Consensus       519 -------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeL  583 (638)
T KOG1126|consen  519 -------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEEL  583 (638)
T ss_pred             -------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence                   5666788999999999999999999999999999        7777778999999999999999999999999


Q ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccccCCc
Q 004829          670 VGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKEDAI  725 (728)
Q Consensus       670 l~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~~~~i  725 (728)
                      .++.        |+...+++.+|.+|.+.|+.+.|+ .-+-.+.+.+|...+ ..|
T Consensus       584 k~~v--------P~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ldpkg~~-i~~  629 (638)
T KOG1126|consen  584 KELV--------PQESSVFALLGKIYKRLGNTDLAL-LHFSWALDLDPKGAQ-IQI  629 (638)
T ss_pred             HHhC--------cchHHHHHHHHHHHHHHccchHHH-HhhHHHhcCCCccch-hhH
Confidence            8865        899999999999999999999999 888899999998766 443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.90  E-value=1.5e-21  Score=190.46  Aligned_cols=407  Identities=16%  Similarity=0.170  Sum_probs=313.6

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh
Q 004829          218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV  297 (728)
Q Consensus       218 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  297 (728)
                      -|+.+.+-...|+.++... +|.+|+.+|+-|+...+.+.    ..-....+.++|..+.+.|+|+.|+..|+..++.. 
T Consensus       233 f~nag~lkmnigni~~kkr-~fskaikfyrmaldqvpsin----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~-  306 (840)
T KOG2003|consen  233 FPNAGILKMNIGNIHFKKR-EFSKAIKFYRMALDQVPSIN----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA-  306 (840)
T ss_pred             cCCCceeeeeecceeeehh-hHHHHHHHHHHHHhhccccc----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC-
Confidence            3555666677889999884 89999999999998755432    12346678899999999999999999999988754 


Q ss_pred             hhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHc------CCCChH----------------------
Q 004829          298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVL------GETDHR----------------------  349 (728)
Q Consensus       298 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~----------------------  349 (728)
                          +     .+.+-++|..|++..|+-++-.+.|.+.+.+-...-      ..++|.                      
T Consensus       307 ----p-----n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka  377 (840)
T KOG2003|consen  307 ----P-----NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKA  377 (840)
T ss_pred             ----c-----cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhh
Confidence                1     223456777788888887777777777654311000      000000                      


Q ss_pred             ----------------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc
Q 004829          350 ----------------------------------------VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS  389 (728)
Q Consensus       350 ----------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  389 (728)
                                                              ....-.+.+-.|.+.|+++.|++.+.-.-    ...   .
T Consensus       378 ~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~----~kd---n  450 (840)
T KOG2003|consen  378 DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE----KKD---N  450 (840)
T ss_pred             hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH----hcc---c
Confidence                                                    01111233445677888888877654322    221   1


Q ss_pred             HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829          390 IEEAADRRLMGLICDSKG--DYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK  467 (728)
Q Consensus       390 ~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  467 (728)
                      .....+-++|..+++.+|  ++.+|..+-..++.+      +...+.++.+.|.+.+..|++++|.+.|+++|.-     
T Consensus       451 k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n-----  519 (840)
T KOG2003|consen  451 KTASAAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN-----  519 (840)
T ss_pred             hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC-----
Confidence            112234556666666644  688888888888754      4555778889999999999999999999999885     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI  547 (728)
Q Consensus       468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  547 (728)
                         +.....+++++|..+..+|++++|+.+|-+.-.+...         .+.++..++.+|..+.+..+|+++|.++..+
T Consensus       520 ---dasc~ealfniglt~e~~~~ldeald~f~klh~il~n---------n~evl~qianiye~led~aqaie~~~q~~sl  587 (840)
T KOG2003|consen  520 ---DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---------NAEVLVQIANIYELLEDPAQAIELLMQANSL  587 (840)
T ss_pred             ---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence               7778899999999999999999999999998888543         6789999999999999999999999999887


Q ss_pred             HhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          548 YGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA  627 (728)
Q Consensus       548 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  627 (728)
                      .+..       ..++..||.+|-+.|+-.+|.+++-.....+        +.......+||..|....-+++|+.+|+++
T Consensus       588 ip~d-------p~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayyidtqf~ekai~y~eka  652 (840)
T KOG2003|consen  588 IPND-------PAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSEKAINYFEKA  652 (840)
T ss_pred             CCCC-------HHHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            7665       4678899999999999999999988776653        334567788999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829          628 RTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR  700 (728)
Q Consensus       628 l~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  700 (728)
                      .-+        .|........++.|+.+.|+|.+|.+.|+....-        .|...+++.-|..+...+|-
T Consensus       653 ali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  653 ALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             Hhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CccchHHHHHHHHHhccccc
Confidence            888        8888888899999999999999999999987763        48888888888888777774

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=4.3e-20  Score=185.77  Aligned_cols=392  Identities=20%  Similarity=0.250  Sum_probs=264.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829          223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ  302 (728)
Q Consensus       223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  302 (728)
                      .-+...|+..+..| +|+.|+.+|..|+.+-         |.....|.+...+|..+|+|++|+..-.+.+++.     +
T Consensus         3 ~e~k~kgnaa~s~~-d~~~ai~~~t~ai~l~---------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p   67 (539)
T KOG0548|consen    3 VELKEKGNAAFSSG-DFETAIRLFTEAIMLS---------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----P   67 (539)
T ss_pred             hHHHHHHHhhcccc-cHHHHHHHHHHHHccC---------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----C
Confidence            44677899999997 9999999999999862         3356678999999999999999999999999886     4


Q ss_pred             chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC-----------------
Q 004829          303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL-----------------  365 (728)
Q Consensus       303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------------  365 (728)
                      +.+    ..|..+|..+.-+|+|++|+..|.+.|+.        +|.....+..|+.++...-                 
T Consensus        68 ~w~----kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~  135 (539)
T KOG0548|consen   68 DWA----KGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN  135 (539)
T ss_pred             chh----hHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc
Confidence            433    45999999999999999999999999998        7777777777777662220                 


Q ss_pred             ----CHHHHHHHHHHHHHHHHHcC---------------------------------------CC------------Cc-
Q 004829          366 ----QFDEAEKICQMALDIHRENT---------------------------------------SP------------AS-  389 (728)
Q Consensus       366 ----~~~~A~~~~~~al~~~~~~~---------------------------------------~~------------~~-  389 (728)
                          ++-.....|...+...+..+                                       .+            +. 
T Consensus       136 ~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~  215 (539)
T KOG0548|consen  136 LPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNT  215 (539)
T ss_pred             ChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhH
Confidence                01111112222222221110                                       00            00 


Q ss_pred             -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          390 -----IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFK  464 (728)
Q Consensus       390 -----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  464 (728)
                           ...+.-...+|...+...++..|+++|..++.+.       .....+.+.+.+|+..|.+.+++..+.++++...
T Consensus       216 ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr  288 (539)
T KOG0548|consen  216 EERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR  288 (539)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH
Confidence                 0124456778999999999999999999998773       4456678888999999999999988888877644


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          465 SAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA  544 (728)
Q Consensus       465 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  544 (728)
                      .... +...++.++..+|..|...++++.|+.+|++++...+.                 ..+.......++++......
T Consensus       289 e~ra-d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----------------~~~ls~lk~~Ek~~k~~e~~  350 (539)
T KOG0548|consen  289 ELRA-DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----------------PDLLSKLKEAEKALKEAERK  350 (539)
T ss_pred             HHHH-HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----------------HHHHHHHHHHHHHHHHHHHH
Confidence            3210 12235566677888999999999999999998876443                 12222333333443333332


Q ss_pred             HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829          545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLF  624 (728)
Q Consensus       545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  624 (728)
                      .-+.+.       .+.-...-|..++..|+|..|+..|.+|+..        .|..+..|.+.|.||..+|.+..|+...
T Consensus       351 a~~~pe-------~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da  415 (539)
T KOG0548|consen  351 AYINPE-------KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDA  415 (539)
T ss_pred             HhhChh-------HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHH
Confidence            222111       1233334466666667777777777666654        3444566666677777777777777766


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829          625 EEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE  697 (728)
Q Consensus       625 ~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~  697 (728)
                      +.++++        +|....+|..-|.++..+.+|++|++.|+++++        .+|...++...+..++..
T Consensus       416 ~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale--------~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  416 KKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--------LDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCchhHHHHHHHHHHHHH
Confidence            666666        666666666666677666777777766666666        235555555555555554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=2.9e-20  Score=198.57  Aligned_cols=308  Identities=16%  Similarity=0.129  Sum_probs=245.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh
Q 004829          352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD  431 (728)
Q Consensus       352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  431 (728)
                      ...+.+|..+...|++++|+..|++++...+..        ..++..+|.++...|++++|+..+++++...  ......
T Consensus        36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~  105 (389)
T PRK11788         36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET--------VELHLALGNLFRRRGEVDRAIRIHQNLLSRP--DLTREQ  105 (389)
T ss_pred             cHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc--------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--CCCHHH
Confidence            445667888899999999999999999875432        3468899999999999999999999876421  011123


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG  511 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  511 (728)
                      ...++..+|.+|...|++++|+.+|.++++.        .+....++..++.++...|++++|+..+++++......   
T Consensus       106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---  174 (389)
T PRK11788        106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS---  174 (389)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc---
Confidence            3467899999999999999999999999876        66677889999999999999999999999988764221   


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT  591 (728)
Q Consensus       512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  591 (728)
                       ........+..+|.++...|++++|+.+|+++++..+..       ..++..+|.++...|++++|+.++++++...  
T Consensus       175 -~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--  244 (389)
T PRK11788        175 -LRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQD--  244 (389)
T ss_pred             -chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
Confidence             122345567889999999999999999999999875443       4567889999999999999999999998761  


Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                           +.....++..++.+|...|++++|+..+++++..        +|+.. .+..++.++...|++++|+.+++++++
T Consensus       245 -----p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~  310 (389)
T PRK11788        245 -----PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQLR  310 (389)
T ss_pred             -----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                 2223467788999999999999999999999887        55543 348899999999999999999999998


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHH--hCChhHHHHHHHHHHH
Q 004829          672 MREEKLGTANPDVEDEKRRLAELLKE--AGRVRNRKSRSLVTFL  713 (728)
Q Consensus       672 ~~~~~~~~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~ll  713 (728)
                      .        +|+.......++..+..  .|+.++|+ ..++.++
T Consensus       311 ~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~-~~~~~~~  345 (389)
T PRK11788        311 R--------HPSLRGFHRLLDYHLAEAEEGRAKESL-LLLRDLV  345 (389)
T ss_pred             h--------CcCHHHHHHHHHHhhhccCCccchhHH-HHHHHHH
Confidence            4        46666544344433322  45888888 5555544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.90  E-value=1.1e-20  Score=216.08  Aligned_cols=378  Identities=13%  Similarity=0.024  Sum_probs=294.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829          238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD  317 (728)
Q Consensus       238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  317 (728)
                      .+.+|...+....+.         .|.....+..++......|++++|..+|+++.......  .-    .......++.
T Consensus       357 ~~~~~~~~~~~~y~~---------~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~----~~~l~~~l~~  421 (987)
T PRK09782        357 NKAEALRLARLLYQQ---------EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA--RL----SQTLMARLAS  421 (987)
T ss_pred             chhHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc--cc----CHHHHHHHHH
Confidence            677777776664432         13345668889999999999999999999999752111  11    1112447777


Q ss_pred             HHHHhCC---HHHHHHH----------------------HHHHHHHHHHHcCCCChH--HHHHHHHHHHHHHHhCCHHHH
Q 004829          318 TYAMLGQ---IENSILC----------------------YTAGLEIQRQVLGETDHR--VGETCRYVAEAHVQSLQFDEA  370 (728)
Q Consensus       318 ~~~~~g~---~~~A~~~----------------------~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A  370 (728)
                      +|...+.   ..+++.+                      +..+...    ++ ..|.  ...++..+|.++.. +++.+|
T Consensus       422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----l~-~~p~~~~~~a~~~LG~~l~~-~~~~eA  495 (987)
T PRK09782        422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL----LG-DMSPSYDAAAWNRLAKCYRD-TLPGVA  495 (987)
T ss_pred             HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh----cc-cCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence            7777655   3333222                      2222222    22 2455  78899999999987 899999


Q ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHH
Q 004829          371 EKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD  450 (728)
Q Consensus       371 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  450 (728)
                      +..+.+++...|..         .....+|.++...|++++|+..|+++...      .+. ...+..+|.++...|+++
T Consensus       496 i~a~~~Al~~~Pd~---------~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~la~all~~Gd~~  559 (987)
T PRK09782        496 LYAWLQAEQRQPDA---------WQHRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLAAANTAQAAGNGA  559 (987)
T ss_pred             HHHHHHHHHhCCch---------HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHHHHHHHHHCCCHH
Confidence            99999998776531         13556777888999999999999986432      122 234678899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH
Q 004829          451 EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS  530 (728)
Q Consensus       451 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~  530 (728)
                      +|+.+|++++..        .|.....+..++..+...|++++|+..|++++++         .|. ...+.++|.++..
T Consensus       560 eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---------~P~-~~a~~~LA~~l~~  621 (987)
T PRK09782        560 ARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---------APS-ANAYVARATIYRQ  621 (987)
T ss_pred             HHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCC-HHHHHHHHHHHHH
Confidence            999999999987        5655666666777777789999999999999988         233 6788999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 004829          531 MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA  610 (728)
Q Consensus       531 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  610 (728)
                      .|++++|+..|++++.+.+..       ..++.++|.++...|++++|+..|++++++        .|....++.++|.+
T Consensus       622 lG~~deA~~~l~~AL~l~Pd~-------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~a  686 (987)
T PRK09782        622 RHNVPAAVSDLRAALELEPNN-------SNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYV  686 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            999999999999999987665       568899999999999999999999999987        44456899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829          611 CVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR  690 (728)
Q Consensus       611 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~  690 (728)
                      +...|++++|+.+|++++++        .|+...+....|.+.....+++.|.+.+.++..+.        |... +...
T Consensus       687 l~~lGd~~eA~~~l~~Al~l--------~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~--------~~~~-a~~~  749 (987)
T PRK09782        687 NQRLDDMAATQHYARLVIDD--------IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS--------FDSS-IGLR  749 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHhc--------CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC--------ccch-hccc
Confidence            99999999999999999999        88888899999999999999999999998887742        4433 6666


Q ss_pred             HHHHHHHhCChh
Q 004829          691 LAELLKEAGRVR  702 (728)
Q Consensus       691 La~~~~~~g~~~  702 (728)
                      .+.++...+++-
T Consensus       750 ~g~~~~~~~~~~  761 (987)
T PRK09782        750 SGAMSTANNNVG  761 (987)
T ss_pred             cchHhhhccccc
Confidence            777777766653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=3.5e-20  Score=198.02  Aligned_cols=308  Identities=14%  Similarity=0.101  Sum_probs=248.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829          311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI  390 (728)
Q Consensus       311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  390 (728)
                      ..+.+|..+...|++++|+..|++++..        +|....++..+|.++...|++++|+..+++++..    ......
T Consensus        37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~~~~  104 (389)
T PRK11788         37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR----PDLTRE  104 (389)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC----CCCCHH
Confidence            3677789999999999999999999988        6778889999999999999999999999988762    111222


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN  470 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  470 (728)
                      ....++..+|.+|...|++++|+..|.+++..      .+....++..++.++...|++++|+..+++++.....   ..
T Consensus       105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~  175 (389)
T PRK11788        105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SL  175 (389)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cc
Confidence            33457889999999999999999999998743      4555678899999999999999999999998875211   01


Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .......+..+|.++...|++++|+.+|+++++..         +....++..+|.++...|++++|+.+|++++...+.
T Consensus       176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        176 RVEIAHFYCELAQQALARGDLDAARALLKKALAAD---------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence            12244567789999999999999999999999873         334567889999999999999999999999876432


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                            ....++..++.+|...|++++|+..+++++...     ++.    ..+..++.++...|++++|+..|+++++.
T Consensus       247 ------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~  311 (389)
T PRK11788        247 ------YLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-----PGA----DLLLALAQLLEEQEGPEAAQALLREQLRR  311 (389)
T ss_pred             ------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc----hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence                  224566789999999999999999999998761     111    23478999999999999999999999998


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 004829          631 LEKEYGPYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEYVVG  671 (728)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~al~  671 (728)
                              .|+.......++..+..  .|+..+|+..+++.++
T Consensus       312 --------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        312 --------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             --------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence                    77766444344433322  5689999999998886

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=9.2e-22  Score=202.60  Aligned_cols=301  Identities=16%  Similarity=0.170  Sum_probs=246.7

Q ss_pred             HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829          310 AGCMQLGDTYAML--GQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP  387 (728)
Q Consensus       310 ~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  387 (728)
                      ..+..+|..|...  -+..+|+..|++.-..        ++....++..+|.+|+.+++|++|..+|+.+-++.|-....
T Consensus       318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h--------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~  389 (638)
T KOG1126|consen  318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSH--------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG  389 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            3456666666544  4567888888883333        67777899999999999999999999999998776644332


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829          388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK  467 (728)
Q Consensus       388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  467 (728)
                      -.        ....+++.+.+ +-++.++.+  .+.   ..++.....|+.+|.||..+++++.|+++|++|+++     
T Consensus       390 me--------iyST~LWHLq~-~v~Ls~Laq--~Li---~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-----  450 (638)
T KOG1126|consen  390 ME--------IYSTTLWHLQD-EVALSYLAQ--DLI---DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-----  450 (638)
T ss_pred             hh--------HHHHHHHHHHh-hHHHHHHHH--HHH---hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----
Confidence            11        11222222211 122223222  122   335666789999999999999999999999999999     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI  547 (728)
Q Consensus       468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  547 (728)
                         +|..+.+|..+|.=+....+++.|..+|+.|+.+         .+....+|+.+|.+|.++++++.|+-+|++|+++
T Consensus       451 ---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I  518 (638)
T KOG1126|consen  451 ---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI  518 (638)
T ss_pred             ---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC
Confidence               9999999999999999999999999999999988         5667889999999999999999999999999998


Q ss_pred             HhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          548 YGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA  627 (728)
Q Consensus       548 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  627 (728)
                      .+..       ..+...+|.++.+.|+.++|+.+|++|+.+        ++......+..|.+++..+++++|+..+++.
T Consensus       519 NP~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeL  583 (638)
T KOG1126|consen  519 NPSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEEL  583 (638)
T ss_pred             Cccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence            7765       456678999999999999999999999987        3444567889999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          628 RTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       628 l~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      .++        .|+...+++.+|.+|.++|+.+.|+..|--|..+
T Consensus       584 k~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  584 KEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            988        8999999999999999999999999999988875

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.8e-19  Score=175.91  Aligned_cols=306  Identities=17%  Similarity=0.156  Sum_probs=242.4

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE  391 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  391 (728)
                      -+.++.+|....+.++++.-++......       -|.....-...|.+.+...++++|+..|+..++..|     ..+.
T Consensus       230 ~~F~~~a~~el~q~~e~~~k~e~l~~~g-------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP-----YRl~  297 (559)
T KOG1155|consen  230 KFFLKKAYQELHQHEEALQKKERLSSVG-------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP-----YRLD  297 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-----Ccch
Confidence            4556777777778888877777665551       345555666778889999999999999998876433     2222


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                      ....   ...+++-..+-. .+.++.+  .....   +.....+.+.+|..|...++.++|+.+|++|+++        +
T Consensus       298 dmdl---ySN~LYv~~~~s-kLs~LA~--~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------N  360 (559)
T KOG1155|consen  298 DMDL---YSNVLYVKNDKS-KLSYLAQ--NVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------N  360 (559)
T ss_pred             hHHH---HhHHHHHHhhhH-HHHHHHH--HHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------C
Confidence            2222   333333333211 1222211  11111   2333456778899999999999999999999999        9


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      |....++..+|.-|..+.+...|+..|++|+++         .|....+|+.||+.|..++.+.=|+-+|++|+++.+..
T Consensus       361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD  431 (559)
T KOG1155|consen  361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND  431 (559)
T ss_pred             cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc---------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999999999999         45677999999999999999999999999999886655


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL  631 (728)
Q Consensus       552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  631 (728)
                             ..++..||.+|.++++.++|+++|.+++..        ......++..||.+|.+.++.++|..+|++.++..
T Consensus       432 -------sRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  432 -------SRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             -------hHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                   578889999999999999999999999987        33346799999999999999999999999999976


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          632 EKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       632 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                       ..-|...+....+...||..+.+.+++++|..+..+++.
T Consensus       497 -~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  497 -ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             -HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence             334555777888888899999999999999999988876

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2e-19  Score=176.96  Aligned_cols=373  Identities=12%  Similarity=0.064  Sum_probs=266.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE  345 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  345 (728)
                      ...++..|.++...|....|+..|..++...     |    ....+|..|+.+...       ++.......-     ..
T Consensus       164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-----P----~~W~AWleL~~lit~-------~e~~~~l~~~-----l~  222 (559)
T KOG1155|consen  164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-----P----WFWSAWLELSELITD-------IEILSILVVG-----LP  222 (559)
T ss_pred             hHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-----C----cchHHHHHHHHhhch-------HHHHHHHHhc-----Cc
Confidence            3445566777777777777777666665432     1    112234444443221       1111111100     00


Q ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDI-HRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMA  424 (728)
Q Consensus       346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  424 (728)
                       .......-..++.++....+.++++.-++....+ ++..        ...-...|.+...+.++++|+..|+.....  
T Consensus       223 -~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~--------~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--  291 (559)
T KOG1155|consen  223 -SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNS--------MYIKTQIAAASYNQRDFDQAESVFEEIRKN--  291 (559)
T ss_pred             -ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--
Confidence             0122333445566666666777776666655544 2111        123456788888899999999999876532  


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          425 ANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       425 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                          +|....-......+++-..+-.+---+.+.+..+        +.....+...+|+.|...++.++|+.+|++|+++
T Consensus       292 ----DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL  359 (559)
T KOG1155|consen  292 ----DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL  359 (559)
T ss_pred             ----CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc
Confidence                3333333333344444444433333333444444        4455666778899999999999999999999999


Q ss_pred             HcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS  584 (728)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  584 (728)
                               +|....+|..+|.-|..+.+...|+..|++|+++.+..       .++|+.||++|..++...=|+-+|++
T Consensus       360 ---------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-------yRAWYGLGQaYeim~Mh~YaLyYfqk  423 (559)
T KOG1155|consen  360 ---------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-------YRAWYGLGQAYEIMKMHFYALYYFQK  423 (559)
T ss_pred             ---------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-------HHHHhhhhHHHHHhcchHHHHHHHHH
Confidence                     56678899999999999999999999999999998766       57899999999999999999999999


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004829          585 AISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE  664 (728)
Q Consensus       585 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~  664 (728)
                      |+..        .|.....|..||.||.+.++.++|+.+|.+|+..        ......++..||.+|..+++..+|..
T Consensus       424 A~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  424 ALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             HHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHH
Confidence            9987        3445689999999999999999999999999987        33345689999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829          665 ILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN  716 (728)
Q Consensus       665 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~  716 (728)
                      +|++.++.. ..-|...|.+..+..-||.-+.+.+++++|. .+...++...
T Consensus       488 ~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~~~  537 (559)
T KOG1155|consen  488 YYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS-YYATLVLKGE  537 (559)
T ss_pred             HHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhcCC
Confidence            999999976 4556777888899999999999999999999 7666665543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.4e-19  Score=180.92  Aligned_cols=438  Identities=14%  Similarity=0.128  Sum_probs=305.9

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCch
Q 004829          225 LLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDH  304 (728)
Q Consensus       225 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  304 (728)
                      +..+.+.+..+. .|.-|+-+.+++..+      + .+|..   .+.+|++++-.|+|..|......-. +.        
T Consensus        19 ~~~~~r~~l~q~-~y~~a~f~adkV~~l------~-~dp~d---~~~~aq~l~~~~~y~ra~~lit~~~-le--------   78 (611)
T KOG1173|consen   19 YRRLVRDALMQH-RYKTALFWADKVAGL------T-NDPAD---IYWLAQVLYLGRQYERAAHLITTYK-LE--------   78 (611)
T ss_pred             HHHHHHHHHHHH-hhhHHHHHHHHHHhc------c-CChHH---HHHHHHHHHhhhHHHHHHHHHHHhh-hh--------
Confidence            334444555553 789999998888765      2 34443   4568999999999999988776531 11        


Q ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHc----------------CCCCh--HHHHHHHHHHHHHHHhCC
Q 004829          305 ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVL----------------GETDH--RVGETCRYVAEAHVQSLQ  366 (728)
Q Consensus       305 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~~~--~~~~~~~~la~~~~~~g~  366 (728)
                       ...+.+.+..+.++....++++|..++..+ .+....+                +.+.+  .....++..|.+|....+
T Consensus        79 -~~d~~cryL~~~~l~~lk~~~~al~vl~~~-~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n  156 (611)
T KOG1173|consen   79 -KRDIACRYLAAKCLVKLKEWDQALLVLGRG-HVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDN  156 (611)
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhcc
Confidence             223456888899999999999999888744 1111000                00001  123356677888999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-HHHH---------HcCCHHHHHHHHHHHHHHH-------HhcC--
Q 004829          367 FDEAEKICQMALDIHRENTSPASIEEAADRRLMG-LICD---------SKGDYEAALEHYVLASMSM-------AANG--  427 (728)
Q Consensus       367 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg-~~~~---------~~g~~~~A~~~~~~al~~~-------~~~~--  427 (728)
                      +++|...|.+|+.........-..... .+...+ ..+.         ..+...+-++.+-++....       ...+  
T Consensus       157 ~~~ar~~Y~~Al~~D~~c~Ea~~~lvs-~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~  235 (611)
T KOG1173|consen  157 REEARDKYKEALLADAKCFEAFEKLVS-AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE  235 (611)
T ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHH-HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence            999999999998654333211000000 000000 0000         0111111111111110000       0000  


Q ss_pred             ---CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------------------------hcCCCCHHHHHHH
Q 004829          428 ---HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS--------------------------AKGENHPAVASVF  478 (728)
Q Consensus       428 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------------------------~~~~~~~~~~~~~  478 (728)
                         .......+....+..++..++|.+..+.+...++...-                          .+-...|..+..|
T Consensus       236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW  315 (611)
T KOG1173|consen  236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSW  315 (611)
T ss_pred             hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcch
Confidence               01123455666667777777777777766665553210                          0012367777889


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcH
Q 004829          479 VRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTI  558 (728)
Q Consensus       479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  558 (728)
                      +.+|..|...|++.+|..+|.++-.+         ++..+.+|...|..|...|+.++|+..|..|-++.+...      
T Consensus       316 ~aVg~YYl~i~k~seARry~SKat~l---------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h------  380 (611)
T KOG1173|consen  316 FAVGCYYLMIGKYSEARRYFSKATTL---------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH------  380 (611)
T ss_pred             hhHHHHHHHhcCcHHHHHHHHHHhhc---------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc------
Confidence            99999999999999999999999988         455788999999999999999999999999999987652      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                       .-...+|.-|...++++.|..+|.+|+.+        .|..+.++..+|.+.+..+.|.+|..+|+.++...+..... 
T Consensus       381 -lP~LYlgmey~~t~n~kLAe~Ff~~A~ai--------~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-  450 (611)
T KOG1173|consen  381 -LPSLYLGMEYMRTNNLKLAEKFFKQALAI--------APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-  450 (611)
T ss_pred             -chHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-
Confidence             12346899999999999999999999998        33345789999999999999999999999999766665433 


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                      .+.....+.+||.+|.+++.+++|+.+|++++.+.        |..+.++..+|.+|..+|+++.|+ ..+.+.+-..|.
T Consensus       451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~l~p~  521 (611)
T KOG1173|consen  451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLDKAI-DHFHKALALKPD  521 (611)
T ss_pred             ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChHHHH-HHHHHHHhcCCc
Confidence            23455678999999999999999999999999854        888899999999999999999999 999988888887


Q ss_pred             c
Q 004829          719 N  719 (728)
Q Consensus       719 ~  719 (728)
                      +
T Consensus       522 n  522 (611)
T KOG1173|consen  522 N  522 (611)
T ss_pred             c
Confidence            6

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=4.3e-19  Score=179.07  Aligned_cols=384  Identities=17%  Similarity=0.209  Sum_probs=279.1

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhh------hh
Q 004829          224 FLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI------PV  297 (728)
Q Consensus       224 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~  297 (728)
                      -.+.+|++++..| +|+.|......-. +         ......+.+..+.++..+.+|++|..++.++-..      ..
T Consensus        51 d~~~~aq~l~~~~-~y~ra~~lit~~~-l---------e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~  119 (611)
T KOG1173|consen   51 DIYWLAQVLYLGR-QYERAAHLITTYK-L---------EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYE  119 (611)
T ss_pred             HHHHHHHHHHhhh-HHHHHHHHHHHhh-h---------hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcc
Confidence            3456788888876 7877766655431 1         1223567888999999999999999988843110      00


Q ss_pred             hh---------cCCch-hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHH--------------
Q 004829          298 LE---------DGQDH-ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGET--------------  353 (728)
Q Consensus       298 ~~---------~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------  353 (728)
                      ..         .+... .......++..|.+|..+.++++|...|.+|+..        ++...++              
T Consensus       120 ~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~--------D~~c~Ea~~~lvs~~mlt~~E  191 (611)
T KOG1173|consen  120 KDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA--------DAKCFEAFEKLVSAHMLTAQE  191 (611)
T ss_pred             hhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--------chhhHHHHHHHHHHHhcchhH
Confidence            00         01000 1112335778899999999999999999998765        2222222              


Q ss_pred             -------------------------------------------------------HHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829          354 -------------------------------------------------------CRYVAEAHVQSLQFDEAEKICQMAL  378 (728)
Q Consensus       354 -------------------------------------------------------~~~la~~~~~~g~~~~A~~~~~~al  378 (728)
                                                                             ....+..++..++|.+..+.+...+
T Consensus       192 e~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ll  271 (611)
T KOG1173|consen  192 EFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELL  271 (611)
T ss_pred             HHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHH
Confidence                                                                   2222333333333333333333333


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829          379 DIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK  458 (728)
Q Consensus       379 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  458 (728)
                      +..|-+..       ..-..+| ++...|+..+   +|.-+..+.   ...|..+..|+.+|..|...|++.+|..+|.+
T Consensus       272 e~dpfh~~-------~~~~~ia-~l~el~~~n~---Lf~lsh~LV---~~yP~~a~sW~aVg~YYl~i~k~seARry~SK  337 (611)
T KOG1173|consen  272 EKDPFHLP-------CLPLHIA-CLYELGKSNK---LFLLSHKLV---DLYPSKALSWFAVGCYYLMIGKYSEARRYFSK  337 (611)
T ss_pred             hhCCCCcc-------hHHHHHH-HHHHhcccch---HHHHHHHHH---HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence            33222211       0111222 3333333221   111111111   23567778899999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829          459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV  538 (728)
Q Consensus       459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  538 (728)
                      +-.+        ++..+.+|...|..+...|..++|+..|..|-+++....    .|     ...+|.-|...+++.-|.
T Consensus       338 at~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h----lP-----~LYlgmey~~t~n~kLAe  400 (611)
T KOG1173|consen  338 ATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH----LP-----SLYLGMEYMRTNNLKLAE  400 (611)
T ss_pred             Hhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc----ch-----HHHHHHHHHHhccHHHHH
Confidence            9998        899999999999999999999999999999999976532    23     456888999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHH
Q 004829          539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTIN  618 (728)
Q Consensus       539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  618 (728)
                      .+|.+|+.+.|..       ..++..+|.+.+..+.|.+|..+|+.++...+....... .....+.+||.++.+++.++
T Consensus       401 ~Ff~~A~ai~P~D-------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~  472 (611)
T KOG1173|consen  401 KFFKQALAIAPSD-------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYE  472 (611)
T ss_pred             HHHHHHHhcCCCc-------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHH
Confidence            9999999998876       357788999999999999999999999988777766644 45678999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       619 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      +|+.+|++++.+        .|....++..+|.+|..+|+++.|+++|.+++.+.
T Consensus       473 eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~  519 (611)
T KOG1173|consen  473 EAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK  519 (611)
T ss_pred             HHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence            999999999999        88888899999999999999999999999999864

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=7.7e-19  Score=176.83  Aligned_cols=375  Identities=18%  Similarity=0.183  Sum_probs=283.2

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChH
Q 004829          270 HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHR  349 (728)
Q Consensus       270 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  349 (728)
                      -..|...+..|+|+.|+.+|..++.+.+    .+|.     .|.+...+|..+|+|++|+..-.+.+++        .|.
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p----~nhv-----lySnrsaa~a~~~~~~~al~da~k~~~l--------~p~   68 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIMLSP----TNHV-----LYSNRSAAYASLGSYEKALKDATKTRRL--------NPD   68 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHccCC----Cccc-----hhcchHHHHHHHhhHHHHHHHHHHHHhc--------CCc
Confidence            3468889999999999999999998852    2332     3789999999999999999999999999        899


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHc-----------------------
Q 004829          350 VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSK-----------------------  406 (728)
Q Consensus       350 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~-----------------------  406 (728)
                      ++..|..+|..+.-+|+|++|+..|.+.|+..+.+..        .+..++.++...                       
T Consensus        69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~--------L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~  140 (539)
T KOG0548|consen   69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQ--------LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN  140 (539)
T ss_pred             hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHH--------HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh
Confidence            9999999999999999999999999999987654421        122222222000                       


Q ss_pred             -----CCHHHHHHH----------------HHHHHHHHH--------h-------cCCC---------------h-----
Q 004829          407 -----GDYEAALEH----------------YVLASMSMA--------A-------NGHE---------------L-----  430 (728)
Q Consensus       407 -----g~~~~A~~~----------------~~~al~~~~--------~-------~~~~---------------~-----  430 (728)
                           -.|..-++.                +.+++-...        .       ....               .     
T Consensus       141 ~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~  220 (539)
T KOG0548|consen  141 YSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRV  220 (539)
T ss_pred             hhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHH
Confidence                 000000000                001100000        0       0000               0     


Q ss_pred             -hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829          431 -DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN  509 (728)
Q Consensus       431 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  509 (728)
                       ..+.....+|...+...++..|++.|..++++        . .....+.+.+.+|+..|.+.+++..+..+++......
T Consensus       221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r  291 (539)
T KOG0548|consen  221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR  291 (539)
T ss_pred             HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH
Confidence             12445678999999999999999999999998        5 5667788899999999999999999999887643321


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF  589 (728)
Q Consensus       510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  589 (728)
                        .+...++.++..+|..|..+++++.|+.+|++++.-.+.               ..+.......++++.......-+ 
T Consensus       292 --ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~Ek~~k~~e~~a~~-  353 (539)
T KOG0548|consen  292 --ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEAEKALKEAERKAYI-  353 (539)
T ss_pred             --HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHHHHHHHHHHHHHhh-
Confidence              112235566667888999999999999999998866543               23334444455555554443333 


Q ss_pred             HHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          590 RTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV  669 (728)
Q Consensus       590 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a  669 (728)
                             .+..+.-...-|..++..|+|..|+.+|.+|+..        +|+....|.+.|.||.++|.+..|+...+.+
T Consensus       354 -------~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~  418 (539)
T KOG0548|consen  354 -------NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKC  418 (539)
T ss_pred             -------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                   2334556666799999999999999999999998        8999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829          670 VGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       670 l~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      +++        +|....+|.+-|.++..+.+|++|. ..+...++.+|.+.
T Consensus       419 ieL--------~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~~~  460 (539)
T KOG0548|consen  419 IEL--------DPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPSNA  460 (539)
T ss_pred             Hhc--------CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchhH
Confidence            995        6999999999999999999999999 88888888887653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.86  E-value=1.3e-18  Score=184.93  Aligned_cols=393  Identities=15%  Similarity=0.128  Sum_probs=294.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Q 004829          267 MCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGET  346 (728)
Q Consensus       267 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  346 (728)
                      ..+...|...+..|++++|+.++.+++...     +.++.    .|..||.+|..+|+.+++..++-.|-.+        
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-----p~~~~----ay~tL~~IyEqrGd~eK~l~~~llAAHL--------  202 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-----PRNPI----AYYTLGEIYEQRGDIEKALNFWLLAAHL--------  202 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----ccchh----hHHHHHHHHHHcccHHHHHHHHHHHHhc--------
Confidence            335667888888899999999999999875     44433    4999999999999999999999888877        


Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829          347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN  426 (728)
Q Consensus       347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  426 (728)
                      .|.....|..++....++|++.+|.-+|.+|++..|...        ......+.+|.+.|++..|...|.+++..... 
T Consensus       203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-  273 (895)
T KOG2076|consen  203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-  273 (895)
T ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-
Confidence            666669999999999999999999999999999876652        34677889999999999999999988766430 


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH---
Q 004829          427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALK---  503 (728)
Q Consensus       427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---  503 (728)
                      .+-...-......+..+...++-+.|+..++.++....      .......+..++.++....+++.|.........   
T Consensus       274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~  347 (895)
T KOG2076|consen  274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRES  347 (895)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence            11112233445557788888888999999999888422      333344566788999999999999988776655   


Q ss_pred             -------------------HHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 004829          504 -------------------IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ  564 (728)
Q Consensus       504 -------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  564 (728)
                                         ++.- . ..-......+...++.+..+.++..+++..+..--..      ........+..
T Consensus       348 e~d~~e~~~~~~~~~~~~~~~~~-~-~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~------~~~d~~dL~~d  419 (895)
T KOG2076|consen  348 EKDDSEWDTDERRREEPNALCEV-G-KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV------WVSDDVDLYLD  419 (895)
T ss_pred             CCChhhhhhhhhccccccccccC-C-CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC------ChhhhHHHHHH
Confidence                               1111 0 0111122223555666666666666666555432211      12345678899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004829          565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG  644 (728)
Q Consensus       565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  644 (728)
                      ++.+|...|++.+|+.+|..+...       .....+.+|+.+|.||..+|.+++|+++|++++..        .|+...
T Consensus       420 ~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D  484 (895)
T KOG2076|consen  420 LADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLD  484 (895)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchh
Confidence            999999999999999999888754       12233678999999999999999999999999999        889999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829          645 VYSNLAGTYDAMGRIDDAIEILEYVVGMRE-EKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS  715 (728)
Q Consensus       645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~  715 (728)
                      +...|+.+|..+|++++|.+.++....-.. ..-+...+...........+|...|+.++-+ .....+++.
T Consensus       485 ~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi-~t~~~Lv~~  555 (895)
T KOG2076|consen  485 ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI-NTASTLVDD  555 (895)
T ss_pred             hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHH
Confidence            999999999999999999988887442100 0001123445667788999999999999977 555555553

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.86  E-value=3.2e-17  Score=189.08  Aligned_cols=414  Identities=11%  Similarity=0.068  Sum_probs=265.4

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC
Q 004829          222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG  301 (728)
Q Consensus       222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  301 (728)
                      ...+...-..+...| ++++|+..+++....      +.. +.....+..+...+...|..++|..+|+....       
T Consensus       370 ~~~~~~~y~~l~r~G-~l~eAl~Lfd~M~~~------gvv-~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------  434 (1060)
T PLN03218        370 SPEYIDAYNRLLRDG-RIKDCIDLLEDMEKR------GLL-DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------  434 (1060)
T ss_pred             chHHHHHHHHHHHCc-CHHHHHHHHHHHHhC------CCC-CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------
Confidence            444555556666776 899999988876541      111 12233344455667777888888877765432       


Q ss_pred             CchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829          302 QDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH  381 (728)
Q Consensus       302 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  381 (728)
                      +     ...+|..+-..|...|++++|..+|.++.+..       -.....+|..+...|.+.|++++|..+|+++....
T Consensus       435 p-----d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G  502 (1060)
T PLN03218        435 P-----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG  502 (1060)
T ss_pred             C-----CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence            1     22346777777778888888888887766541       11233566777777888888888888877765421


Q ss_pred             HHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829          382 RENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALT  461 (728)
Q Consensus       382 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  461 (728)
                         ..++    ..+|..+...|.+.|++++|+..|.....    .+..|+ ..+|..+...|.+.|++++|.+.|.+...
T Consensus       503 ---v~Pd----vvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~  570 (1060)
T PLN03218        503 ---VEAN----VHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKA  570 (1060)
T ss_pred             ---CCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               1111    23577777788888888888887766532    233333 35677777788888888888888777654


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829          462 AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLL  541 (728)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  541 (728)
                      ....    -.|+ ..+|..+...|.+.|++++|.++|+.+.+..-        .....+|..+...|.+.|++++|+.+|
T Consensus       571 ~~~g----i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi--------~p~~~tynsLI~ay~k~G~~deAl~lf  637 (1060)
T PLN03218        571 ETHP----IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNI--------KGTPEVYTIAVNSCSQKGDWDFALSIY  637 (1060)
T ss_pred             hcCC----CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--------CCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence            2100    1232 35667777778888888888888877665421        112456777777788888888888888


Q ss_pred             HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829          542 NKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAA  621 (728)
Q Consensus       542 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  621 (728)
                      .+..+.     +..+. ..+|..+...|.+.|++++|..++.++.+.    +-. +  ...++..+...|.+.|++++|.
T Consensus       638 ~eM~~~-----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~-p--d~~tynsLI~ay~k~G~~eeA~  704 (1060)
T PLN03218        638 DDMKKK-----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIK-L--GTVSYSSLMGACSNAKNWKKAL  704 (1060)
T ss_pred             HHHHHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC-C--CHHHHHHHHHHHHhCCCHHHHH
Confidence            776543     22222 345667777788888888888877776543    111 1  2356777777888888888888


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCh
Q 004829          622 DLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRV  701 (728)
Q Consensus       622 ~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~  701 (728)
                      .+|++....     + ..|+ ..+|..|...|.+.|++++|+++|++....     | -.|+. ..+..|...+.+.|++
T Consensus       705 ~lf~eM~~~-----g-~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~-----G-i~Pd~-~Ty~sLL~a~~k~G~l  770 (1060)
T PLN03218        705 ELYEDIKSI-----K-LRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL-----G-LCPNT-ITYSILLVASERKDDA  770 (1060)
T ss_pred             HHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHHCCCH
Confidence            887776542     1 1333 346777778888888888888888776542     1 22333 3455566777788888


Q ss_pred             hHHHHHHHHHHHhh
Q 004829          702 RNRKSRSLVTFLDS  715 (728)
Q Consensus       702 ~~A~~~~l~~ll~~  715 (728)
                      ++|. ..+..+++.
T Consensus       771 e~A~-~l~~~M~k~  783 (1060)
T PLN03218        771 DVGL-DLLSQAKED  783 (1060)
T ss_pred             HHHH-HHHHHHHHc
Confidence            8887 666666543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.86  E-value=8.2e-19  Score=186.29  Aligned_cols=355  Identities=13%  Similarity=0.091  Sum_probs=274.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc
Q 004829          310 AGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS  389 (728)
Q Consensus       310 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  389 (728)
                      ..++..|...+..|++++|+.++.++++.        +|....+|..||.+|.++|+.+++....-.|-.+.|+..    
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~----  207 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY----  207 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh----
Confidence            34778888888999999999999999998        899999999999999999999999988887776655443    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004829          390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE  469 (728)
Q Consensus       390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  469 (728)
                          ..|..++.....+|++.+|.-+|.+|+..      .|......+..+.+|.++|++..|...|.+++.+....   
T Consensus       208 ----e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~---  274 (895)
T KOG2076|consen  208 ----ELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV---  274 (895)
T ss_pred             ----HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch---
Confidence                35889999999999999999999999976      56667888999999999999999999999999982211   


Q ss_pred             CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 004829          470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK---  546 (728)
Q Consensus       470 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---  546 (728)
                      +...........+..+...++-+.|++.++.++......       .....+..++.++.....++.|.........   
T Consensus       275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~-------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~  347 (895)
T KOG2076|consen  275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE-------ASLEDLNILAELFLKNKQSDKALMKIVDDRNRES  347 (895)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence            011223334455788888888899999999999843221       1233456788899999999999888766554   


Q ss_pred             -------------------HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004829          547 -------------------IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM  607 (728)
Q Consensus       547 -------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  607 (728)
                                         +.+-..+....+..+...++.+..+.++..+++..+..--.       .........+..+
T Consensus       348 e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n-------~~~~d~~dL~~d~  420 (895)
T KOG2076|consen  348 EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN-------VWVSDDVDLYLDL  420 (895)
T ss_pred             CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc-------CChhhhHHHHHHH
Confidence                               11111111122222455666666666776666655543221       1234456789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 004829          608 GLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDE  687 (728)
Q Consensus       608 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~  687 (728)
                      +.+|...|++.+|+.+|..+...-       ......+|+.+|.||..+|.+++|+++|++++.+        .|++.++
T Consensus       421 a~al~~~~~~~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D~  485 (895)
T KOG2076|consen  421 ADALTNIGKYKEALRLLSPITNRE-------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLDA  485 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHhcCc-------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchhh
Confidence            999999999999999999887641       1123668999999999999999999999999995        4999999


Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829          688 KRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       688 ~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      ...|+.+|..+|+.++|. ..++.+..-++.+
T Consensus       486 Ri~Lasl~~~~g~~Ekal-EtL~~~~~~D~~~  516 (895)
T KOG2076|consen  486 RITLASLYQQLGNHEKAL-ETLEQIINPDGRN  516 (895)
T ss_pred             hhhHHHHHHhcCCHHHHH-HHHhcccCCCccc
Confidence            999999999999999999 7777766444333

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.83  E-value=2.4e-17  Score=188.43  Aligned_cols=266  Identities=13%  Similarity=0.095  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829          395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV  474 (728)
Q Consensus       395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  474 (728)
                      +++.+...|.+.|++++|...|+...         .....+|..+...|...|++++|+.+|++....      +-.| .
T Consensus       261 ~~n~Li~~y~k~g~~~~A~~vf~~m~---------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~------g~~p-d  324 (697)
T PLN03081        261 VSCALIDMYSKCGDIEDARCVFDGMP---------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS------GVSI-D  324 (697)
T ss_pred             eHHHHHHHHHHCCCHHHHHHHHHhCC---------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-C
Confidence            45667788888888888888887542         223457888888888888888888888877543      1122 2


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829          475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ  554 (728)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  554 (728)
                      ..++..+..++...|++++|.+.+..+++..-.        ....++..+...|.+.|++++|...|++..+   .    
T Consensus       325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~--------~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~----  389 (697)
T PLN03081        325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP--------LDIVANTALVDLYSKWGRMEDARNVFDRMPR---K----  389 (697)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC--------CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---C----
Confidence            346777777777888888888777777665211        1234556667777777777777777765431   0    


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE  634 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  634 (728)
                         ...+|+.+...|.+.|+.++|++.|++....    +-. +  ...++..+..++...|..++|..+|+...+..   
T Consensus       390 ---d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~-P--d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~---  456 (697)
T PLN03081        390 ---NLISWNALIAGYGNHGRGTKAVEMFERMIAE----GVA-P--NHVTFLAVLSACRYSGLSEQGWEIFQSMSENH---  456 (697)
T ss_pred             ---CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC-C--CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---
Confidence               0234566677777777777777777765532    111 1  12345555556666666666666665554320   


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHH--------------------------------HHHHHHHHHHHcCCCCh
Q 004829          635 YGPYHHDTLGVYSNLAGTYDAMGRIDDAIEI--------------------------------LEYVVGMREEKLGTANP  682 (728)
Q Consensus       635 ~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~--------------------------------~~~al~~~~~~~~~~~p  682 (728)
                       + ..|+ ...|..+..+|.+.|++++|.++                                +++.++        ..|
T Consensus       457 -g-~~p~-~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--------~~p  525 (697)
T PLN03081        457 -R-IKPR-AMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--------MGP  525 (697)
T ss_pred             -C-CCCC-ccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--------CCC
Confidence             0 0111 12344444445555555555444                                444433        235


Q ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829          683 DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN  716 (728)
Q Consensus       683 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~  716 (728)
                      +....|..|..+|...|++++|. +.++.+.+..
T Consensus       526 ~~~~~y~~L~~~y~~~G~~~~A~-~v~~~m~~~g  558 (697)
T PLN03081        526 EKLNNYVVLLNLYNSSGRQAEAA-KVVETLKRKG  558 (697)
T ss_pred             CCCcchHHHHHHHHhCCCHHHHH-HHHHHHHHcC
Confidence            45556778888888888888888 7777766543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.83  E-value=1.3e-17  Score=190.57  Aligned_cols=374  Identities=14%  Similarity=0.066  Sum_probs=230.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829          223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ  302 (728)
Q Consensus       223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  302 (728)
                      ..+..+...+...+ +++.|...+......      + -.|+ ...+..+...|.+.|++++|..+|++....       
T Consensus       124 ~t~~~ll~a~~~~~-~~~~a~~l~~~m~~~------g-~~~~-~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-------  187 (697)
T PLN03081        124 STYDALVEACIALK-SIRCVKAVYWHVESS------G-FEPD-QYMMNRVLLMHVKCGMLIDARRLFDEMPER-------  187 (697)
T ss_pred             HHHHHHHHHHHhCC-CHHHHHHHHHHHHHh------C-CCcc-hHHHHHHHHHHhcCCCHHHHHHHHhcCCCC-------
Confidence            45556666677775 788888887776653      2 1233 455788889999999999999999987531       


Q ss_pred             chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH----------------------------cCCCChHHHHHH
Q 004829          303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV----------------------------LGETDHRVGETC  354 (728)
Q Consensus       303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------------------~~~~~~~~~~~~  354 (728)
                           ...+|..+...|...|++++|+.+|++.+......                            ....-.....++
T Consensus       188 -----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~  262 (697)
T PLN03081        188 -----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS  262 (697)
T ss_pred             -----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeH
Confidence                 12348899999999999999999999886431000                            000000112244


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHH
Q 004829          355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVAS  434 (728)
Q Consensus       355 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  434 (728)
                      ..|...|.+.|++++|...|++...       ++    ..+|+.+...|...|++++|+..|.+...    .+-.|+ ..
T Consensus       263 n~Li~~y~k~g~~~~A~~vf~~m~~-------~~----~vt~n~li~~y~~~g~~~eA~~lf~~M~~----~g~~pd-~~  326 (697)
T PLN03081        263 CALIDMYSKCGDIEDARCVFDGMPE-------KT----TVAWNSMLAGYALHGYSEEALCLYYEMRD----SGVSID-QF  326 (697)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC-------CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCC-HH
Confidence            5677788888999988888876531       11    24688888888899999999888876542    122333 23


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHH----------------
Q 004829          435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC----------------  498 (728)
Q Consensus       435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~----------------  498 (728)
                      ++..+...+...|++++|.+.+..+++.       ..+....++..|...|.+.|++++|...|                
T Consensus       327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~  399 (697)
T PLN03081        327 TFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA  399 (697)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence            5666666777777777777766665543       11222334444455555555555555554                


Q ss_pred             ---------------HHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 004829          499 ---------------ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEA  563 (728)
Q Consensus       499 ---------------~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  563 (728)
                                     ++.....-       .| ...++..+...+...|..++|..+|+...+...-.    +. ...|.
T Consensus       400 ~y~~~G~~~~A~~lf~~M~~~g~-------~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~----p~-~~~y~  466 (697)
T PLN03081        400 GYGNHGRGTKAVEMFERMIAEGV-------AP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK----PR-AMHYA  466 (697)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-------CC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC----CC-ccchH
Confidence                           44433210       01 12234444444444455555544444443321111    11 12345


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004829          564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTL  643 (728)
Q Consensus       564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  643 (728)
                      .+..+|.+.|++++|.+.++++       ... +  ...+|..+...+...|+++.|...+++.+.+        .|+..
T Consensus       467 ~li~~l~r~G~~~eA~~~~~~~-------~~~-p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~  528 (697)
T PLN03081        467 CMIELLGREGLLDEAYAMIRRA-------PFK-P--TVNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKL  528 (697)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHC-------CCC-C--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCC
Confidence            5566666666666666555432       111 1  1345677777777777777777777776655        56556


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          644 GVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       644 ~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                      ..|..|+.+|...|++++|.++++...+
T Consensus       529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        529 NNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             cchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            6888999999999999999999988765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.83  E-value=9.3e-17  Score=152.20  Aligned_cols=321  Identities=14%  Similarity=0.054  Sum_probs=257.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          262 SLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ  341 (728)
Q Consensus       262 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  341 (728)
                      ++..+.-.+.+|..++..|++..|+..|..|++..     ++    ...+++..|.+|..+|+-.-|+..+.+++++   
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-----p~----~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---  101 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-----PN----NYQAIFRRATVYLAMGKSKAALQDLSRVLEL---  101 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----ch----hHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence            35556668889999999999999999999999875     22    3346899999999999999999999999999   


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC-------cHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA-------SIEEAADRRLMGLICDSKGDYEAALE  414 (728)
Q Consensus       342 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a~~~~~lg~~~~~~g~~~~A~~  414 (728)
                           .|+...+....|.++.++|++++|+.-|..+++..+......       .+..-..+......++..|++..|++
T Consensus       102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~  176 (504)
T KOG0624|consen  102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE  176 (504)
T ss_pred             -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence                 899999999999999999999999999999997665433211       11122334455566778899999999


Q ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHH
Q 004829          415 HYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDS  494 (728)
Q Consensus       415 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  494 (728)
                      +....+++      .|..+..+...+.||...|+...|+..++.+-.+        ..+....++.++.+++..|+.+.+
T Consensus       177 ~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~s  242 (504)
T KOG0624|consen  177 MITHLLEI------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAENS  242 (504)
T ss_pred             HHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHH
Confidence            99988866      5778889999999999999999999999999887        666778899999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCcHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 004829          495 KSYCENALKIYGKPNHGIPSEEIASGLIDI---------AAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM  565 (728)
Q Consensus       495 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  565 (728)
                      +...++++++.      +++......|..+         +.-....++|.++++..++.++..+..   ..........+
T Consensus       243 L~~iRECLKld------pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r~~  313 (504)
T KOG0624|consen  243 LKEIRECLKLD------PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFRVL  313 (504)
T ss_pred             HHHHHHHHccC------cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeehee
Confidence            99999999983      2333333333332         223345667777777777766654432   22223444567


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          566 GVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       566 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      ..|+...|++.+|+..+.+++.+        .+..+.++...|.+|+....|+.|+..|++|.+.
T Consensus       314 c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  314 CTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             eecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            88899999999999999999987        5556789999999999999999999999999988

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.83  E-value=8.6e-17  Score=168.28  Aligned_cols=434  Identities=13%  Similarity=0.061  Sum_probs=323.6

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhc
Q 004829          221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLED  300 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  300 (728)
                      .+..+-.+...+...| +|+.+.+.|++++...-.         ....|+.++.+|...|.-..|+.+++..+...+   
T Consensus       322 d~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~---------~~e~w~~~als~saag~~s~Av~ll~~~~~~~~---  388 (799)
T KOG4162|consen  322 DAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFG---------EHERWYQLALSYSAAGSDSKAVNLLRESLKKSE---  388 (799)
T ss_pred             hHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhh---------hHHHHHHHHHHHHHhccchHHHHHHHhhccccc---
Confidence            3444455555666666 899999999998876422         244588899999999999999999998886642   


Q ss_pred             CCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC-----------CHHH
Q 004829          301 GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL-----------QFDE  369 (728)
Q Consensus       301 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~  369 (728)
                      .+.++..   .++.-..|+...+.+++++.+..+++......   .......++..+|.+|-.+-           ...+
T Consensus       389 ~ps~~s~---~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k  462 (799)
T KOG4162|consen  389 QPSDISV---LLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK  462 (799)
T ss_pred             CCCcchH---HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence            1222222   35555566677899999999999999976332   23445667777777775432           2456


Q ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCH
Q 004829          370 AEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARF  449 (728)
Q Consensus       370 A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  449 (728)
                      +++.+++++++.+.++        .+.+.++.-|..+++.+.|..+..+++.+.     ....+.+|..++.++...+++
T Consensus       463 slqale~av~~d~~dp--------~~if~lalq~A~~R~l~sAl~~~~eaL~l~-----~~~~~~~whLLALvlSa~kr~  529 (799)
T KOG4162|consen  463 SLQALEEAVQFDPTDP--------LVIFYLALQYAEQRQLTSALDYAREALALN-----RGDSAKAWHLLALVLSAQKRL  529 (799)
T ss_pred             HHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhhhh
Confidence            6777777776655443        358889999999999999999999988652     234567899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH
Q 004829          450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ  529 (728)
Q Consensus       450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~  529 (728)
                      .+|+.....+++-        .+.+.........+-...++.++|+..+...+.+++...+-...-+........+.+..
T Consensus       530 ~~Al~vvd~al~E--------~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l  601 (799)
T KOG4162|consen  530 KEALDVVDAALEE--------FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL  601 (799)
T ss_pred             HHHHHHHHHHHHH--------hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc
Confidence            9999999999987        44444444455556666899999999999999998753211001111222222333444


Q ss_pred             HcCCHHHHHHHHHHHHHHHhcC----------------CCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          530 SMNELEQAVKLLNKALKIYGKT----------------PGQQ---STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR  590 (728)
Q Consensus       530 ~~g~~~~A~~~~~~al~~~~~~----------------~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  590 (728)
                      ...+..+|...+.++..+....                ++..   .....++...+..+...++.++|..++.++-.+  
T Consensus       602 a~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--  679 (799)
T KOG4162|consen  602 ALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--  679 (799)
T ss_pred             CcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--
Confidence            4556666666666655544311                1111   123345667888999999999999999999887  


Q ss_pred             HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH--HHHH
Q 004829          591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE--ILEY  668 (728)
Q Consensus       591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~--~~~~  668 (728)
                            .+..+..|+..|.++...|++++|.+.|..|+.+        +|+...+...+|.++...|+..-|..  ++..
T Consensus       680 ------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~d  745 (799)
T KOG4162|consen  680 ------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSD  745 (799)
T ss_pred             ------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence                  4567789999999999999999999999999999        88888899999999999999888888  9999


Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829          669 VVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       669 al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      ++++        +|...++|+.||.++..+|+.++|. .++...+...+.+
T Consensus       746 alr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S~  787 (799)
T KOG4162|consen  746 ALRL--------DPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEESN  787 (799)
T ss_pred             HHhh--------CCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccCC
Confidence            9984        5888999999999999999999999 9999988877664

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.82  E-value=4.9e-17  Score=182.49  Aligned_cols=401  Identities=11%  Similarity=-0.003  Sum_probs=292.5

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004829          263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV  342 (728)
Q Consensus       263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  342 (728)
                      |..+...+..+.+.++.|+++.|+..|+++++..     +..+..    ...++.++...|+.++|+.++++++.-    
T Consensus        31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-----P~~~~a----v~dll~l~~~~G~~~~A~~~~eka~~p----   97 (822)
T PRK14574         31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-----PLQSGQ----VDDWLQIAGWAGRDQEVIDVYERYQSS----   97 (822)
T ss_pred             ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----ccchhh----HHHHHHHHHHcCCcHHHHHHHHHhccC----
Confidence            4456667888999999999999999999999875     444322    227778888889999999999999822    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          343 LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMS  422 (728)
Q Consensus       343 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~  422 (728)
                          .+.....+..+|.+|...|++++|+++|+++++..|...        .++..++.++...++.++|+..+.++...
T Consensus        98 ----~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~--------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~  165 (822)
T PRK14574         98 ----MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP--------DLISGMIMTQADAGRGGVVLKQATELAER  165 (822)
T ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--------HHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence                345556666778899999999999999999998877653        24667789999999999999999887644


Q ss_pred             HHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHH---
Q 004829          423 MAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE---  499 (728)
Q Consensus       423 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---  499 (728)
                            .+... .+..++.++...++..+|+..|+++++.        .|....++..+..++...|-...|.+...   
T Consensus       166 ------dp~~~-~~l~layL~~~~~~~~~AL~~~ekll~~--------~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p  230 (822)
T PRK14574        166 ------DPTVQ-NYMTLSYLNRATDRNYDALQASSEAVRL--------APTSEEVLKNHLEILQRNRIVEPALRLAKENP  230 (822)
T ss_pred             ------CcchH-HHHHHHHHHHhcchHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence                  33322 2345566666678887799999999998        66666666666565555555444443332   


Q ss_pred             --------------------------------------HHHHHHcCCCC-----CCCcHHHHHHHHHHHHHHHHcCCHHH
Q 004829          500 --------------------------------------NALKIYGKPNH-----GIPSEEIASGLIDIAAIYQSMNELEQ  536 (728)
Q Consensus       500 --------------------------------------~al~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~  536 (728)
                                                            +++........     +..++....+....-.++...|++.+
T Consensus       231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~  310 (822)
T PRK14574        231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD  310 (822)
T ss_pred             cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence                                                  12221111110     11223344556666667788889999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCC
Q 004829          537 AVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT  616 (728)
Q Consensus       537 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  616 (728)
                      ++..|+.........    +  ..+....|..|+.+++.++|+.+|.+++.-......  .+........|-.+|+..++
T Consensus       311 vi~~y~~l~~~~~~~----P--~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~--~~~~~~~~~~L~yA~ld~e~  382 (822)
T PRK14574        311 LIKEYEAMEAEGYKM----P--DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR--NSDDLLDADDLYYSLNESEQ  382 (822)
T ss_pred             HHHHHHHhhhcCCCC----C--HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC--CCcchHHHHHHHHHHHhccc
Confidence            998888655332222    2  235567899999999999999999998764211101  11112234567788999999


Q ss_pred             HHHHHHHHHHHHHHHHH-h--c----CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 004829          617 INEAADLFEEARTILEK-E--Y----GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKR  689 (728)
Q Consensus       617 ~~~A~~~~~~al~~~~~-~--~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~  689 (728)
                      +++|..++++..+...- .  .    ...+|+.......++.++...|++.+|++.+++.+..        .|.+...+.
T Consensus       383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------aP~n~~l~~  454 (822)
T PRK14574        383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------APANQNLRI  454 (822)
T ss_pred             HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence            99999999998763110 0  1    1357788889999999999999999999999999884        488888999


Q ss_pred             HHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829          690 RLAELLKEAGRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       690 ~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      .+|.++...|++.+|. ..++.+...+|...
T Consensus       455 ~~A~v~~~Rg~p~~A~-~~~k~a~~l~P~~~  484 (822)
T PRK14574        455 ALASIYLARDLPRKAE-QELKAVESLAPRSL  484 (822)
T ss_pred             HHHHHHHhcCCHHHHH-HHHHHHhhhCCccH
Confidence            9999999999999999 87788887777754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.82  E-value=6.8e-16  Score=183.29  Aligned_cols=420  Identities=15%  Similarity=0.062  Sum_probs=303.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829          223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ  302 (728)
Q Consensus       223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  302 (728)
                      ..+...+..+...| ++.+|+.++..+-.          ....+..+...+..+...|++..+..++..+- ...   ..
T Consensus       342 ~lh~raa~~~~~~g-~~~~Al~~a~~a~d----------~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp-~~~---~~  406 (903)
T PRK04841        342 ELHRAAAEAWLAQG-FPSEAIHHALAAGD----------AQLLRDILLQHGWSLFNQGELSLLEECLNALP-WEV---LL  406 (903)
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHCCC----------HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCC-HHH---Hh
Confidence            34444455556665 77777776655421          13344556667888888899888777765531 110   01


Q ss_pred             chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829          303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETD-HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH  381 (728)
Q Consensus       303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  381 (728)
                      ..+.    .....+.++...|++++|..++..+...........+ .....+...++.++...|++++|..++++++...
T Consensus       407 ~~~~----l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~  482 (903)
T PRK04841        407 ENPR----LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL  482 (903)
T ss_pred             cCcc----hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            1111    2466788888999999999999988766432100011 1234556668889999999999999999998753


Q ss_pred             HHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829          382 RENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALT  461 (728)
Q Consensus       382 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  461 (728)
                      +..   .....+.++..+|.++...|++++|...+.+++......+.......++..+|.++...|++++|..++++++.
T Consensus       483 ~~~---~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~  559 (903)
T PRK04841        483 PLT---WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ  559 (903)
T ss_pred             CCc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            321   22334456788999999999999999999999988887776666677889999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829          462 AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLL  541 (728)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  541 (728)
                      +.....+...+.....+..+|.++...|++++|...+.+++.+.....    ......++..++.++...|++++|...+
T Consensus       560 ~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~~l  635 (903)
T PRK04841        560 LIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ----PQQQLQCLAMLAKISLARGDLDNARRYL  635 (903)
T ss_pred             HHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC----chHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            988764333444555677889999999999999999999999876532    2335567788999999999999999999


Q ss_pred             HHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829          542 NKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEA  620 (728)
Q Consensus       542 ~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  620 (728)
                      .++..+.... +... ............+...|+.+.|..++......    ...........+..+|.++...|++++|
T Consensus       636 ~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~g~~~~A  710 (903)
T PRK04841        636 NRLENLLGNG-RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP----EFANNHFLQGQWRNIARAQILLGQFDEA  710 (903)
T ss_pred             HHHHHHHhcc-cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC----CCccchhHHHHHHHHHHHHHHcCCHHHH
Confidence            9999886654 2111 11111111234556688999988887665431    1111111233456789999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829          621 ADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE  675 (728)
Q Consensus       621 ~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~  675 (728)
                      ...+++++...+....  ......++..+|.++...|+.++|..++.+++.+...
T Consensus       711 ~~~l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        711 EIILEELNENARSLRL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            9999999998655432  3456778899999999999999999999999998743

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.81  E-value=1.4e-15  Score=175.73  Aligned_cols=344  Identities=14%  Similarity=0.082  Sum_probs=251.7

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCch
Q 004829          225 LLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDH  304 (728)
Q Consensus       225 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  304 (728)
                      +..+...+...| ++++|...+.+....       ...|+ ...|..+...|.+.|++++|..+|+++....     . .
T Consensus       440 yn~LL~a~~k~g-~~e~A~~lf~~M~~~-------Gl~pD-~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v-~  504 (1060)
T PLN03218        440 FNMLMSVCASSQ-DIDGALRVLRLVQEA-------GLKAD-CKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----V-E  504 (1060)
T ss_pred             HHHHHHHHHhCc-CHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----C-C
Confidence            344445555665 777777777766542       12232 4457788888999999999999998877531     1 1


Q ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 004829          305 ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN  384 (728)
Q Consensus       305 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  384 (728)
                        ....+|..+...|...|++++|+.+|.......      -.|+ ..+|..+...|.+.|++++|.+++.++...... 
T Consensus       505 --PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G------v~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-  574 (1060)
T PLN03218        505 --ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------VKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHP-  574 (1060)
T ss_pred             --CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-
Confidence              123458888999999999999999998876541      1333 457888888999999999999999888653111 


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          385 TSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFK  464 (728)
Q Consensus       385 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  464 (728)
                      ..++    ..++..+...|.+.|++++|.+.|+.....    +- +....+|..+...|.+.|++++|+.+|.+....  
T Consensus       575 i~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~----gi-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~--  643 (1060)
T PLN03218        575 IDPD----HITVGALMKACANAGQVDRAKEVYQMIHEY----NI-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK--  643 (1060)
T ss_pred             CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Confidence            1111    246788888999999999999999876532    22 223467888889999999999999999887664  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          465 SAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA  544 (728)
Q Consensus       465 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  544 (728)
                          +-.|+ ..+|..+...|...|++++|..+++.+.+....        ....+|..+...|.+.|++++|..+|++.
T Consensus       644 ----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~--------pd~~tynsLI~ay~k~G~~eeA~~lf~eM  710 (1060)
T PLN03218        644 ----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK--------LGTVSYSSLMGACSNAKNWKKALELYEDI  710 (1060)
T ss_pred             ----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence                22343 457888889999999999999999988765211        13457888999999999999999999887


Q ss_pred             HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829          545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLF  624 (728)
Q Consensus       545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  624 (728)
                      ...     +..+. ..+|..+...|.+.|++++|+++|+++...    +-. +  ....|..+...|...|++++|..+|
T Consensus       711 ~~~-----g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~----Gi~-P--d~~Ty~sLL~a~~k~G~le~A~~l~  777 (1060)
T PLN03218        711 KSI-----KLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL----GLC-P--NTITYSILLVASERKDDADVGLDLL  777 (1060)
T ss_pred             HHc-----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCC-C--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            543     22222 356888999999999999999999987643    211 1  1356777778899999999999999


Q ss_pred             HHHHHH
Q 004829          625 EEARTI  630 (728)
Q Consensus       625 ~~al~~  630 (728)
                      .++++.
T Consensus       778 ~~M~k~  783 (1060)
T PLN03218        778 SQAKED  783 (1060)
T ss_pred             HHHHHc
Confidence            998764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=9.6e-16  Score=148.91  Aligned_cols=426  Identities=13%  Similarity=0.051  Sum_probs=299.5

Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh-----------cCCCChhHHHHHHHHHHHHHHcCChhHHHH
Q 004829          219 PALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICA-----------NGKPSLEQVMCLHVLAAIHCSLGQYNEAIP  287 (728)
Q Consensus       219 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~-----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  287 (728)
                      |..-..+..+....+.. ++|..|+..|..++..-....           ...+.+.........+.||...++-+.|+.
T Consensus        40 ~~~yqll~yl~~~~~h~-r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~  118 (564)
T KOG1174|consen   40 DVEYQVLLYLLNANYKE-RNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIE  118 (564)
T ss_pred             hHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHH
Confidence            34445555555555555 367777777777766532210           011223345556778999999999999999


Q ss_pred             HHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------------------------
Q 004829          288 VLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ--------------------------  341 (728)
Q Consensus       288 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------------------------  341 (728)
                      .+.+.....      ..|.    ..+.++..+..-++..++.-.|...+..+.-                          
T Consensus       119 ~l~~~p~t~------r~p~----inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~  188 (564)
T KOG1174|consen  119 TLLQVPPTL------RSPR----INLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAA  188 (564)
T ss_pred             HHhcCCccc------cchh----HHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhhe
Confidence            887765432      1111    2445555555555544444444433322111                          


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASM  421 (728)
Q Consensus       342 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  421 (728)
                      ...+..+........+|.++....-+.-+..++-.-...++.+        ...+..+|.+++..|++.+|+..|+++..
T Consensus       189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N--------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~  260 (564)
T KOG1174|consen  189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN--------EHLMMALGKCLYYNGDYFQAEDIFSSTLC  260 (564)
T ss_pred             ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc--------HHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence            0111222222223334444444444444444444433333332        34578899999999999999999999875


Q ss_pred             HHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          422 SMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENA  501 (728)
Q Consensus       422 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  501 (728)
                      +      +|......-..|.++...|+++.-..+....+.+        ....+.-++--+.+++..+++..|+.+-+++
T Consensus       261 ~------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~  326 (564)
T KOG1174|consen  261 A------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------VKYTASHWFVHAQLLYDEKKFERALNFVEKC  326 (564)
T ss_pred             C------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence            5      6777778888888999999998877777777666        3334455666677888889999999999999


Q ss_pred             HHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829          502 LKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNT  581 (728)
Q Consensus       502 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  581 (728)
                      ++.-         +....++...|.++...++.++|+-.|+.|..+.+-.       ..+|..|-.+|+..|++.+|...
T Consensus       327 I~~~---------~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~~kEA~~~  390 (564)
T KOG1174|consen  327 IDSE---------PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKRFKEANAL  390 (564)
T ss_pred             hccC---------cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhchHHHHHHH
Confidence            9883         3456778889999999999999999999998876543       56888899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh
Q 004829          582 LKSAISKFRTSGEKKSALFGIALNQMG-LACVQ-RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI  659 (728)
Q Consensus       582 ~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~  659 (728)
                      .+.++..+..        .+.++..+| .+++. -.--++|..++++++.+        .|....+...+|.++...|++
T Consensus       391 An~~~~~~~~--------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~  454 (564)
T KOG1174|consen  391 ANWTIRLFQN--------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPT  454 (564)
T ss_pred             HHHHHHHhhc--------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCcc
Confidence            9988887533        345666665 44443 33568999999999999        899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829          660 DDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       660 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      ++++.++++++..+        |+ ...+..||.++..++.+.+|. ..+..++..+|++
T Consensus       455 ~D~i~LLe~~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  455 KDIIKLLEKHLIIF--------PD-VNLHNHLGDIMRAQNEPQKAM-EYYYKALRQDPKS  504 (564)
T ss_pred             chHHHHHHHHHhhc--------cc-cHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCccc
Confidence            99999999999854        44 356888999999999999999 8888888888875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=5.3e-17  Score=152.89  Aligned_cols=287  Identities=19%  Similarity=0.161  Sum_probs=233.5

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhh
Q 004829          216 LGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKP-SLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVE  294 (728)
Q Consensus       216 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  294 (728)
                      ..+|....+|++..  ++.. .|...|-..+...+.+-.....+.. .-...+.-..+|.||+++|-+.+|...++.+++
T Consensus       175 a~~p~l~kaLFey~--fyhe-nDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~  251 (478)
T KOG1129|consen  175 AERPTLVKALFEYL--FYHE-NDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLT  251 (478)
T ss_pred             ccChHHHHHHHHHH--HHhh-hhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhh
Confidence            45666777776654  3334 2788887777666655333221111 122344567899999999999999999999997


Q ss_pred             hhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829          295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC  374 (728)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  374 (728)
                      ..      .++    .++..|+.+|....+...|+..|.+.++.        .|.....+..+|.++..++++++|.++|
T Consensus       252 q~------~~~----dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lY  313 (478)
T KOG1129|consen  252 QF------PHP----DTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLY  313 (478)
T ss_pred             cC------Cch----hHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHH
Confidence            63      333    34899999999999999999999999988        6888889999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 004829          375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIF  454 (728)
Q Consensus       375 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  454 (728)
                      +.+++..+.+.+        +...+|..|+.-++.+-|+.+|++.+..-      ......++++|.|++..++++-++.
T Consensus       314 k~vlk~~~~nvE--------aiAcia~~yfY~~~PE~AlryYRRiLqmG------~~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  314 KLVLKLHPINVE--------AIACIAVGYFYDNNPEMALRYYRRILQMG------AQSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHHhcCCccce--------eeeeeeeccccCCChHHHHHHHHHHHHhc------CCChHHHhhHHHHHHhhcchhhhHH
Confidence            999988765543        34567888999999999999999988762      3445689999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829          455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL  534 (728)
Q Consensus       455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  534 (728)
                      .|++|+....+     ....+.+|++||.+....|++.-|..+|+-++.-         +++...++++||.+-.+.|+.
T Consensus       380 sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---------d~~h~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  380 SFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---------DAQHGEALNNLAVLAARSGDI  445 (478)
T ss_pred             HHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhcc---------CcchHHHHHhHHHHHhhcCch
Confidence            99999987442     4556889999999999999999999999988765         556789999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 004829          535 EQAVKLLNKALKIYGKT  551 (728)
Q Consensus       535 ~~A~~~~~~al~~~~~~  551 (728)
                      ++|..++..|-...+..
T Consensus       446 ~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  446 LGARSLLNAAKSVMPDM  462 (478)
T ss_pred             HHHHHHHHHhhhhCccc
Confidence            99999999998877665

>PLN03077 Protein ECB2; Provisional

Probab=99.78  E-value=7e-16  Score=180.81  Aligned_cols=406  Identities=15%  Similarity=0.065  Sum_probs=255.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----------------------------HHHhcCCCChhHHHHHHHHHH
Q 004829          223 PFLLKQTREMISSGENPQKALELAKRAMKSF----------------------------EICANGKPSLEQVMCLHVLAA  274 (728)
Q Consensus       223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~----------------------------~~~~~~~~~~~~~~~~~~la~  274 (728)
                      ..+..+...|.+.| ++++|+.+|.+....-                            .......-.| ...++..+..
T Consensus       254 ~s~n~li~~~~~~g-~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~  331 (857)
T PLN03077        254 ISWNAMISGYFENG-ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV-DVSVCNSLIQ  331 (857)
T ss_pred             chhHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-chHHHHHHHH
Confidence            34666677788887 8999999988865420                            0000000011 1334555566


Q ss_pred             HHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 004829          275 IHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETC  354 (728)
Q Consensus       275 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  354 (728)
                      .|.+.|++++|..+|++...       +     ...+|..+...|...|++++|+.+|++.....      -.|+. .++
T Consensus       332 ~y~k~g~~~~A~~vf~~m~~-------~-----d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~Pd~-~t~  392 (857)
T PLN03077        332 MYLSLGSWGEAEKVFSRMET-------K-----DAVSWTAMISGYEKNGLPDKALETYALMEQDN------VSPDE-ITI  392 (857)
T ss_pred             HHHhcCCHHHHHHHHhhCCC-------C-----CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCCCc-eeH
Confidence            66666666666666665432       1     11136666666666666666666666554331      12222 233


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHH
Q 004829          355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVAS  434 (728)
Q Consensus       355 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  434 (728)
                      ..+-..+...|+++.|.+++..+.+....   +    ...+++.+...|.+.|++++|.+.|++..        .+ ...
T Consensus       393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~---~----~~~~~n~Li~~y~k~g~~~~A~~vf~~m~--------~~-d~v  456 (857)
T PLN03077        393 ASVLSACACLGDLDVGVKLHELAERKGLI---S----YVVVANALIEMYSKCKCIDKALEVFHNIP--------EK-DVI  456 (857)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhCCC---c----chHHHHHHHHHHHHcCCHHHHHHHHHhCC--------CC-Cee
Confidence            33334555666666666666555432111   1    12356677778888888888888877542        11 234


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHH----------------------------------HHHHH
Q 004829          435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA----------------------------------SVFVR  480 (728)
Q Consensus       435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~----------------------------------~~~~~  480 (728)
                      +|..+...|...|++++|+..|++.+..   .    .|+..                                  ..+..
T Consensus       457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~---~----~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na  529 (857)
T PLN03077        457 SWTSIIAGLRLNNRCFEALIFFRQMLLT---L----KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA  529 (857)
T ss_pred             eHHHHHHHHHHCCCHHHHHHHHHHHHhC---C----CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence            6777778888888888888888887531   1    22211                                  12233


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829          481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG  560 (728)
Q Consensus       481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  560 (728)
                      |...|.+.|++++|...|+..    ..         ...+|..+...|...|+.++|+.+|++..+.     +..+. ..
T Consensus       530 Li~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd-~~  590 (857)
T PLN03077        530 LLDLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTGYVAHGKGSMAVELFNRMVES-----GVNPD-EV  590 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-cc
Confidence            446677777777777777653    11         2456788888888888888888888887643     21111 12


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829          561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH  640 (728)
Q Consensus       561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  640 (728)
                      ++..+-..+.+.|++++|..+|+...+..   +-. +  ....|..+..++.+.|++++|.+++++.- +        .|
T Consensus       591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---gi~-P--~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~--------~p  655 (857)
T PLN03077        591 TFISLLCACSRSGMVTQGLEYFHSMEEKY---SIT-P--NLKHYACVVDLLGRAGKLTEAYNFINKMP-I--------TP  655 (857)
T ss_pred             cHHHHHHHHhhcChHHHHHHHHHHHHHHh---CCC-C--chHHHHHHHHHHHhCCCHHHHHHHHHHCC-C--------CC
Confidence            34455567888888888888888776432   111 1  13567888888888899988888887641 1        34


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829          641 DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN  716 (728)
Q Consensus       641 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~  716 (728)
                      + ..+|..|-..+...|+.+.|....++++++        .|+....+..|+.+|...|+|++|. +..+.+.+..
T Consensus       656 d-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--------~p~~~~~y~ll~n~ya~~g~~~~a~-~vr~~M~~~g  721 (857)
T PLN03077        656 D-PAVWGALLNACRIHRHVELGELAAQHIFEL--------DPNSVGYYILLCNLYADAGKWDEVA-RVRKTMRENG  721 (857)
T ss_pred             C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCcchHHHHHHHHHHCCChHHHH-HHHHHHHHcC
Confidence            4 335666667778888888888887777774        3667778899999999999999999 7777776543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.78  E-value=5e-16  Score=147.34  Aligned_cols=320  Identities=15%  Similarity=0.118  Sum_probs=252.5

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829          308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP  387 (728)
Q Consensus       308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  387 (728)
                      .+.-++.+|..+...|++.+|+..|..|++.        +|....+++..|.+|..+|+-..|+.-+.+++++-++..  
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~--  106 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM--  106 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH--
Confidence            3445889999999999999999999999998        899999999999999999999999999999998865542  


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829          388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE---------LDVASIDCSIGDAYLSLARFDEAIFSYHK  458 (728)
Q Consensus       388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~  458 (728)
                            .+....|.++.++|++++|..-|...+..-...+..         ......+......++..|++..|+++...
T Consensus       107 ------~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~  180 (504)
T KOG0624|consen  107 ------AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITH  180 (504)
T ss_pred             ------HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence                  356788999999999999999999887542211111         01112233444556778999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829          459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV  538 (728)
Q Consensus       459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  538 (728)
                      .|++        .|..+..+...+.+|...|+...|+..++.+-++.         .+....++.++.+++..|+.+.++
T Consensus       181 llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs---------~DnTe~~ykis~L~Y~vgd~~~sL  243 (504)
T KOG0624|consen  181 LLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS---------QDNTEGHYKISQLLYTVGDAENSL  243 (504)
T ss_pred             HHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc---------ccchHHHHHHHHHHHhhhhHHHHH
Confidence            9998        89999999999999999999999999999998883         235678899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCcH---HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 004829          539 KLLNKALKIYGKTPGQQSTI---AGI--EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ  613 (728)
Q Consensus       539 ~~~~~al~~~~~~~~~~~~~---~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  613 (728)
                      ...++++++.++...-.+..   -.+  ...-+......++|.+++...++.++.-    +...+.....+..+..|+..
T Consensus       244 ~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e----p~~~~ir~~~~r~~c~C~~~  319 (504)
T KOG0624|consen  244 KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE----PEETMIRYNGFRVLCTCYRE  319 (504)
T ss_pred             HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC----Ccccceeeeeeheeeecccc
Confidence            99999999876652111100   000  0111333455677777777777666541    11122223445667788899


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          614 RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       614 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      .+++.+|+..+.+++.+        .|+.+.++...|.+|.....|+.|+.-|++|.++
T Consensus       320 d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  320 DEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             cCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            99999999999999999        9999999999999999999999999999999985

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=1.5e-17  Score=156.53  Aligned_cols=282  Identities=16%  Similarity=0.151  Sum_probs=232.5

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 004829          361 HVQSLQFDEAEKICQMALDIHRENTS--PASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCS  438 (728)
Q Consensus       361 ~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  438 (728)
                      |+..++...|...+...+++......  ........--..+|.||.++|-+.+|.+.++.++..       ......+..
T Consensus       189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-------~~~~dTfll  261 (478)
T KOG1129|consen  189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-------FPHPDTFLL  261 (478)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-------CCchhHHHH
Confidence            44455666666555555544332221  111122223457999999999999999999988754       334567889


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH
Q 004829          439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA  518 (728)
Q Consensus       439 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  518 (728)
                      |+.+|.+..+...|+..|.+.++.        .|.....+..+|.++..++++++|.++|+.+++.         ++...
T Consensus       262 LskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~---------~~~nv  324 (478)
T KOG1129|consen  262 LSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL---------HPINV  324 (478)
T ss_pred             HHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc---------CCccc
Confidence            999999999999999999999997        8888999999999999999999999999999998         45566


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH
Q 004829          519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA  598 (728)
Q Consensus       519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  598 (728)
                      ++...+|.-|+..++.+-|+.+|++.+++--..       ...+.++|.|++..++++-++..|++|+.....     +.
T Consensus       325 EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~  392 (478)
T KOG1129|consen  325 EAIACIAVGYFYDNNPEMALRYYRRILQMGAQS-------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PG  392 (478)
T ss_pred             eeeeeeeeccccCCChHHHHHHHHHHHHhcCCC-------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cc
Confidence            777888899999999999999999999985544       467889999999999999999999999987543     34


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829          599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG  678 (728)
Q Consensus       599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~  678 (728)
                      ..+.+|+++|.+....|++.-|..+|+-++.-        +++..+++.+||.+-.+.|+.++|..++..|-.+      
T Consensus       393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~------  458 (478)
T KOG1129|consen  393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV------  458 (478)
T ss_pred             hhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh------
Confidence            45789999999999999999999999999987        8889999999999999999999999999998874      


Q ss_pred             CCChHHHHHHHHHHHH
Q 004829          679 TANPDVEDEKRRLAEL  694 (728)
Q Consensus       679 ~~~p~~~~~~~~La~~  694 (728)
                        .|+..+..++|+.+
T Consensus       459 --~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  459 --MPDMAEVTTNLQFM  472 (478)
T ss_pred             --CccccccccceeEE
Confidence              37777666666543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.77  E-value=2.2e-14  Score=170.49  Aligned_cols=421  Identities=14%  Similarity=0.044  Sum_probs=300.3

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Q 004829          265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLG  344 (728)
Q Consensus       265 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  344 (728)
                      ....+...+..+...|++.+|+.++..+-..          ......+...+..+...|++..+..++..+-....    
T Consensus       340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~----------~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~----  405 (903)
T PRK04841        340 LPELHRAAAEAWLAQGFPSEAIHHALAAGDA----------QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVL----  405 (903)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH----------HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHH----
Confidence            3455666777888899999998877665321          12234566778888888998887776654311100    


Q ss_pred             CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          345 ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP-ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSM  423 (728)
Q Consensus       345 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  423 (728)
                      ..+|.   .....+.++...|++++|..++..+.......... .......+...++.++...|++++|..++++++...
T Consensus       406 ~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~  482 (903)
T PRK04841        406 LENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL  482 (903)
T ss_pred             hcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            11233   33556777889999999999999987765433211 112234456668899999999999999999988642


Q ss_pred             HhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          424 AANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALK  503 (728)
Q Consensus       424 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (728)
                      .. .+......+...+|.++...|++++|..++.+++......  +.......++..+|.++...|++++|..++++++.
T Consensus       483 ~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~--g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~  559 (903)
T PRK04841        483 PL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH--DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ  559 (903)
T ss_pred             CC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            21 2222345567889999999999999999999999987765  22334456788999999999999999999999999


Q ss_pred             HHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829          504 IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLK  583 (728)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  583 (728)
                      +...... ...+.....+..+|.++...|++++|...+.+++.+.... + .......+..+|.++...|++++|...+.
T Consensus       560 ~~~~~~~-~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~  636 (903)
T PRK04841        560 LIEEQHL-EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q-PQQQLQCLAMLAKISLARGDLDNARRYLN  636 (903)
T ss_pred             HHHHhcc-ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C-chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9876431 1223344556778999999999999999999999987754 2 22345667789999999999999999999


Q ss_pred             HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004829          584 SAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI  663 (728)
Q Consensus       584 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~  663 (728)
                      ++..+....... ..............+...|+.+.|..++.......   .+ ........+..++.++...|++++|.
T Consensus       637 ~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~-~~~~~~~~~~~~a~~~~~~g~~~~A~  711 (903)
T PRK04841        637 RLENLLGNGRYH-SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FA-NNHFLQGQWRNIARAQILLGQFDEAE  711 (903)
T ss_pred             HHHHHHhccccc-HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Cc-cchhHHHHHHHHHHHHHHcCCHHHHH
Confidence            998876553211 11111111112344556789999988876644310   00 01112233567899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829          664 EILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN  716 (728)
Q Consensus       664 ~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~  716 (728)
                      .++++++...+.. + .......++..+|.++...|+.++|. ..+..+++..
T Consensus       712 ~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~-~~L~~Al~la  761 (903)
T PRK04841        712 IILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQ-RVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHh
Confidence            9999999986543 2 23466788899999999999999999 7777777654

>PLN03077 Protein ECB2; Provisional

Probab=99.77  E-value=3.1e-16  Score=183.80  Aligned_cols=397  Identities=15%  Similarity=0.096  Sum_probs=267.8

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCc
Q 004829          224 FLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQD  303 (728)
Q Consensus       224 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  303 (728)
                      .+..+...|...| ++++|...|++..         .  ++ ..+|..+...|.+.|++++|+.+|.++....   ..++
T Consensus       224 ~~n~Li~~y~k~g-~~~~A~~lf~~m~---------~--~d-~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g---~~Pd  287 (857)
T PLN03077        224 VVNALITMYVKCG-DVVSARLVFDRMP---------R--RD-CISWNAMISGYFENGECLEGLELFFTMRELS---VDPD  287 (857)
T ss_pred             hHhHHHHHHhcCC-CHHHHHHHHhcCC---------C--CC-cchhHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC
Confidence            3445556677776 8888888887652         1  22 3457888888999999999999998877542   1122


Q ss_pred             hhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          304 HALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE  383 (728)
Q Consensus       304 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  383 (728)
                           ..++..+...+...|+.+.|.+++..+.+..       -.....++..+...|.+.|++++|..+|++...    
T Consensus       288 -----~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----  351 (857)
T PLN03077        288 -----LMTITSVISACELLGDERLGREMHGYVVKTG-------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----  351 (857)
T ss_pred             -----hhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Confidence                 2246777777788888888888887776552       122346778888888899999999888887531    


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829          384 NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAF  463 (728)
Q Consensus       384 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  463 (728)
                         ++    ..+|+.+...|.+.|++++|++.|.+....    +..|+. .++..+-..+...|++++|.+.+..+++. 
T Consensus       352 ---~d----~~s~n~li~~~~~~g~~~~A~~lf~~M~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-  418 (857)
T PLN03077        352 ---KD----AVSWTAMISGYEKNGLPDKALETYALMEQD----NVSPDE-ITIASVLSACACLGDLDVGVKLHELAERK-  418 (857)
T ss_pred             ---CC----eeeHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHh-
Confidence               11    125788888888999999999888865432    223332 24444445677788888888888777654 


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          464 KSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNK  543 (728)
Q Consensus       464 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  543 (728)
                            .......++..|...|.+.|++++|.+.|++..+.            ...+|..+...|...|++++|+.+|++
T Consensus       419 ------g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~------------d~vs~~~mi~~~~~~g~~~eA~~lf~~  480 (857)
T PLN03077        419 ------GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK------------DVISWTSIIAGLRLNNRCFEALIFFRQ  480 (857)
T ss_pred             ------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence                  12233556777888888888888888887754210            123567777778888888888888887


Q ss_pred             HHHHHhcCCCCCCcH-------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          544 ALKIYGKTPGQQSTI-------------------------------AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS  592 (728)
Q Consensus       544 al~~~~~~~~~~~~~-------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  592 (728)
                      .+..   ...+....                               ..++..+...|.+.|++++|...|+..       
T Consensus       481 m~~~---~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-------  550 (857)
T PLN03077        481 MLLT---LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-------  550 (857)
T ss_pred             HHhC---CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-------
Confidence            7531   11111100                               012234557788888888887777654       


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          593 GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       593 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                       .  +  ...+|+.+...|...|+.++|+.+|++..+.      .-.|+.. ++..+-..|.+.|++++|..+|+...+.
T Consensus       551 -~--~--d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~  618 (857)
T PLN03077        551 -E--K--DVVSWNILLTGYVAHGKGSMAVELFNRMVES------GVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEK  618 (857)
T ss_pred             -C--C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence             1  1  2357888888999999999999999887653      1133322 4556667788888999998888887743


Q ss_pred             HHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004829          673 REEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTF  712 (728)
Q Consensus       673 ~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~l  712 (728)
                      .     ...|+ ...+..+..+|.+.|++++|. ..++.+
T Consensus       619 ~-----gi~P~-~~~y~~lv~~l~r~G~~~eA~-~~~~~m  651 (857)
T PLN03077        619 Y-----SITPN-LKHYACVVDLLGRAGKLTEAY-NFINKM  651 (857)
T ss_pred             h-----CCCCc-hHHHHHHHHHHHhCCCHHHHH-HHHHHC
Confidence            2     12343 356778888888888888888 666654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.76  E-value=1.8e-15  Score=158.57  Aligned_cols=403  Identities=14%  Similarity=0.097  Sum_probs=291.8

Q ss_pred             CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChhHHHHHHHHhh
Q 004829          215 GLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLE-QVMCLHVLAAIHCSLGQYNEAIPVLERSV  293 (728)
Q Consensus       215 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al  293 (728)
                      .+..-.....|...+..+...| .-..|+...+..+..       .+.|. ....+..-..|+...+.+++++.+..+++
T Consensus       350 ~~~~~~~~e~w~~~als~saag-~~s~Av~ll~~~~~~-------~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai  421 (799)
T KOG4162|consen  350 LPFSFGEHERWYQLALSYSAAG-SDSKAVNLLRESLKK-------SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAI  421 (799)
T ss_pred             hHhhhhhHHHHHHHHHHHHHhc-cchHHHHHHHhhccc-------ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence            3333344555666666666665 455566555555543       22232 23334444556667899999999999999


Q ss_pred             hhhhhhcCCchhHhHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829          294 EIPVLEDGQDHALAKFAGCMQLGDTYAMLG-----------QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHV  362 (728)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  362 (728)
                      .......+.    ....++..+|.+|..+-           ...++++.++++++.        +|....+.++++.-|.
T Consensus       422 ~~~~~~~~~----l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--------d~~dp~~if~lalq~A  489 (799)
T KOG4162|consen  422 SLLGGQRSH----LKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--------DPTDPLVIFYLALQYA  489 (799)
T ss_pred             HHhhhhhhh----hhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--------CCCCchHHHHHHHHHH
Confidence            865322222    23345888888886542           345667777777776        5666688999999999


Q ss_pred             HhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 004829          363 QSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDA  442 (728)
Q Consensus       363 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  442 (728)
                      .+++.+.|..+.++++++.+...       +.+|..++.++...+++.+|+.....++..+..      ..........+
T Consensus       490 ~~R~l~sAl~~~~eaL~l~~~~~-------~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~------N~~l~~~~~~i  556 (799)
T KOG4162|consen  490 EQRQLTSALDYAREALALNRGDS-------AKAWHLLALVLSAQKRLKEALDVVDAALEEFGD------NHVLMDGKIHI  556 (799)
T ss_pred             HHHhHHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh------hhhhchhhhhh
Confidence            99999999999999998854432       457999999999999999999999988765422      22223333445


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC------------
Q 004829          443 YLSLARFDEAIFSYHKALTAFKSAKGENH-PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN------------  509 (728)
Q Consensus       443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------  509 (728)
                      -...++.++|+..+...+.+++..++-.. -.........+.+.....+..+|...+.++..+.....            
T Consensus       557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s  636 (799)
T KOG4162|consen  557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS  636 (799)
T ss_pred             hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence            55689999999999999999885432110 01122223334444555667777777776665543211            


Q ss_pred             ---CCCC--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          510 ---HGIP--SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS  584 (728)
Q Consensus       510 ---~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  584 (728)
                         ++.+  +......|...+.++...+..++|..++.++..+.+..       +.+|+..|.++...|++.+|...|..
T Consensus       637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-------~~~~~~~G~~~~~~~~~~EA~~af~~  709 (799)
T KOG4162|consen  637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS-------ASVYYLRGLLLEVKGQLEEAKEAFLV  709 (799)
T ss_pred             cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh-------HHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence               1111  22234567778888999999999999999998876444       78899999999999999999999999


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004829          585 AISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAAD--LFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDA  662 (728)
Q Consensus       585 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A  662 (728)
                      |+.+        +|....+...+|.++.+.|+..-|..  ++..++++        +|...++|+.||.++.++|+.++|
T Consensus       710 Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  710 ALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--------DPLNHEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             HHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccchHHH
Confidence            9988        34445788999999999998888887  99999999        899999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 004829          663 IEILEYVVGMR  673 (728)
Q Consensus       663 ~~~~~~al~~~  673 (728)
                      .++|..|+++.
T Consensus       774 aecf~aa~qLe  784 (799)
T KOG4162|consen  774 AECFQAALQLE  784 (799)
T ss_pred             HHHHHHHHhhc
Confidence            99999999975

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.2e-14  Score=141.49  Aligned_cols=290  Identities=13%  Similarity=0.112  Sum_probs=236.8

Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829          347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN  426 (728)
Q Consensus       347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  426 (728)
                      -+.....+..+|.+++..|++++|+..|+++.-+.+..        ...+-..|.++...|++++-..+....+..    
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~--------i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~----  295 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN--------VEAMDLYAVLLGQEGGCEQDSALMDYLFAK----  295 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh--------hhhHHHHHHHHHhccCHhhHHHHHHHHHhh----
Confidence            46777889999999999999999999999998766543        234666788888999998877665554433    


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829          427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (728)
                        ....+.-|+--+...+...++..|+.+-++++..        ++....++...|.++...|+.++|.-.|+.|..+  
T Consensus       296 --~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--  363 (564)
T KOG1174|consen  296 --VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQML--  363 (564)
T ss_pred             --hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhc--
Confidence              1223344566677888999999999999999998        8888899999999999999999999999999988  


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH-HHHH-HcCCHHHHHHHHHH
Q 004829          507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG-VMYY-MTGNYSDSYNTLKS  584 (728)
Q Consensus       507 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~  584 (728)
                             .|....+|..|-.+|...|++.+|......++..++..       +.++..+| .+++ .----++|.+++++
T Consensus       364 -------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-------A~~LtL~g~~V~~~dp~~rEKAKkf~ek  429 (564)
T KOG1174|consen  364 -------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-------ARSLTLFGTLVLFPDPRMREKAKKFAEK  429 (564)
T ss_pred             -------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-------hhhhhhhcceeeccCchhHHHHHHHHHh
Confidence                   46678899999999999999999999999999988776       45555665 3333 33446789999999


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004829          585 AISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE  664 (728)
Q Consensus       585 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~  664 (728)
                      ++.+        .|.+..+...+|.++...|.++.++.++++.+..        .++. ..+..||.++...+.+++|+.
T Consensus       430 ~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--------~~D~-~LH~~Lgd~~~A~Ne~Q~am~  492 (564)
T KOG1174|consen  430 SLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--------FPDV-NLHNHLGDIMRAQNEPQKAME  492 (564)
T ss_pred             hhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--------cccc-HHHHHHHHHHHHhhhHHHHHH
Confidence            9987        5667788889999999999999999999999998        4443 367889999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829          665 ILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG  699 (728)
Q Consensus       665 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  699 (728)
                      +|..|+.+        +|....++..|-.+-....
T Consensus       493 ~y~~ALr~--------dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  493 YYYKALRQ--------DPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             HHHHHHhc--------CccchHHHHHHHHHHhccC
Confidence            99999984        5777777766655544433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.75  E-value=3.4e-14  Score=146.21  Aligned_cols=439  Identities=16%  Similarity=0.124  Sum_probs=249.8

Q ss_pred             ccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 004829          213 AAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERS  292 (728)
Q Consensus       213 ~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  292 (728)
                      ......|+.++.+...|..+...| +-++|..+...++..         ++....||+.+|.++....+|++|+.+|+.|
T Consensus        32 ~iL~k~~eHgeslAmkGL~L~~lg-~~~ea~~~vr~glr~---------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA  101 (700)
T KOG1156|consen   32 QILKKFPEHGESLAMKGLTLNCLG-KKEEAYELVRLGLRN---------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA  101 (700)
T ss_pred             HHHHhCCccchhHHhccchhhccc-chHHHHHHHHHHhcc---------CcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            334456666666666666666665 566666666666542         2334556666666666666666666666666


Q ss_pred             hhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Q 004829          293 VEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEK  372 (728)
Q Consensus       293 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  372 (728)
                      +.+.     +++.    .++..++....++++++-......+.+++        .|.....|..+|..+...|++..|..
T Consensus       102 l~~~-----~dN~----qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~  164 (700)
T KOG1156|consen  102 LKIE-----KDNL----QILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALE  164 (700)
T ss_pred             HhcC-----CCcH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6553     2222    23666666666666666666666666655        45555666666666666666666666


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHH
Q 004829          373 ICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEA  452 (728)
Q Consensus       373 ~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  452 (728)
                      .++...................+......+....|.+++|++.+..--      +...+........|.++..++++++|
T Consensus       165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e------~~i~Dkla~~e~ka~l~~kl~~lEeA  238 (700)
T KOG1156|consen  165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE------KQIVDKLAFEETKADLLMKLGQLEEA  238 (700)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh------hHHHHHHHHhhhHHHHHHHHhhHHhH
Confidence            666665554433333444445555555666666666666666554321      11223333445566777777777777


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH-----------HHH
Q 004829          453 IFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA-----------SGL  521 (728)
Q Consensus       453 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----------~~~  521 (728)
                      ...|...+..        .|+....+..+-.++.   .+....+..........+..+....+...           ..+
T Consensus       239 ~~~y~~Ll~r--------nPdn~~Yy~~l~~~lg---k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~v  307 (700)
T KOG1156|consen  239 VKVYRRLLER--------NPDNLDYYEGLEKALG---KIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIV  307 (700)
T ss_pred             HHHHHHHHhh--------CchhHHHHHHHHHHHH---HHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHH
Confidence            7777777666        6666666666655554   22222222222222222211111111000           000


Q ss_pred             HHHHHHHHHc-------------CCHHHHHHHHHHHHHHHhcCC--------------CCCCcHHHHHHHHHHHHHHcCC
Q 004829          522 IDIAAIYQSM-------------NELEQAVKLLNKALKIYGKTP--------------GQQSTIAGIEAQMGVMYYMTGN  574 (728)
Q Consensus       522 ~~la~~~~~~-------------g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~~la~~~~~~g~  574 (728)
                      ...-.-....             .+.... ..+++.+..+....              ..+..+.+.++.++.-+...|+
T Consensus       308 dkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~  386 (700)
T KOG1156|consen  308 DKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD  386 (700)
T ss_pred             HHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence            0000000000             011111 12222222222111              1233567778889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004829          575 YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD  654 (728)
Q Consensus       575 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~  654 (728)
                      ++.|..+++.|+..        .|.....+...|+++...|++++|...+.++.++        +....-+-..-|....
T Consensus       387 ~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--------D~aDR~INsKcAKYmL  450 (700)
T KOG1156|consen  387 YEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--------DTADRAINSKCAKYML  450 (700)
T ss_pred             HHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------cchhHHHHHHHHHHHH
Confidence            99999999999875        6667888889999999999999999999999887        3222223335777888


Q ss_pred             HcCChHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004829          655 AMGRIDDAIEILEYVVGMREEKLGT-ANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFL  713 (728)
Q Consensus       655 ~~g~~~~A~~~~~~al~~~~~~~~~-~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll  713 (728)
                      +.++.++|.+...+.-.-.....+. ..-...+....-|..|.++|++..|. +.+..+-
T Consensus       451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL-Kkfh~i~  509 (700)
T KOG1156|consen  451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL-KKFHEIE  509 (700)
T ss_pred             HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH-HHHhhHH
Confidence            8999999988776554321111110 11122333334588999999998888 5444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.73  E-value=1.1e-14  Score=139.29  Aligned_cols=347  Identities=15%  Similarity=0.121  Sum_probs=276.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE  391 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  391 (728)
                      .+.-|.-++...++++|+..+.+.+......     ......+-.+..+...+|.|.+++.+--..++.+.+..+  ...
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~-----~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d--s~~   81 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDL-----MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED--SDF   81 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHHHHH-----HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence            5666777888899999999999998875442     344567777888899999999998887777766665543  233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                      ...++.+++..+....++.+++.+..-.+.+..... ...-..+...+|..+..++.++++++.|+.|+.+....  .|.
T Consensus        82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~-~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~D~  158 (518)
T KOG1941|consen   82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRA-GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--DDA  158 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCc-ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--CCc
Confidence            455688999999999999999988776554321111 01223566779999999999999999999999997765  344


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN-HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .....++..||.+|....++++|+-+..+|.++..... .+.+......+++.++..+..+|..-.|.++.+++.++.-.
T Consensus       159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~  238 (518)
T KOG1941|consen  159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ  238 (518)
T ss_pred             eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            45567899999999999999999999999999988765 23334456778899999999999999999999999999888


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHH-----HHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINE-----AADLFE  625 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~~  625 (728)
                      . |+....+.....+|.+|...|+.+.|..-|++|......+++...  ...++...|.++....-..+     |+++-.
T Consensus       239 ~-Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmg--qv~al~g~Akc~~~~r~~~k~~~Crale~n~  315 (518)
T KOG1941|consen  239 H-GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMG--QVEALDGAAKCLETLRLQNKICNCRALEFNT  315 (518)
T ss_pred             h-CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHH--HHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            7 888888889999999999999999999999999999888887643  35677778887776655554     999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          626 EARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       626 ~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      +++++...+..  .-.+......++.+|..+|.-++=...+.++-+..
T Consensus       316 r~levA~~IG~--K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~  361 (518)
T KOG1941|consen  316 RLLEVASSIGA--KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV  361 (518)
T ss_pred             HHHHHHHHhhh--hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            99999887754  33566788899999999998888777777765543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.73  E-value=1.9e-14  Score=147.60  Aligned_cols=367  Identities=16%  Similarity=0.070  Sum_probs=210.9

Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh
Q 004829          219 PALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL  298 (728)
Q Consensus       219 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  298 (728)
                      .+.-..++.-+..+...+ -++-|+..|..+++.+..         .-..|...+..--..|..++-..+|++++...  
T Consensus       513 ed~~~tw~~da~~~~k~~-~~~carAVya~alqvfp~---------k~slWlra~~~ek~hgt~Esl~Allqkav~~~--  580 (913)
T KOG0495|consen  513 EDRKSTWLDDAQSCEKRP-AIECARAVYAHALQVFPC---------KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--  580 (913)
T ss_pred             chhHhHHhhhHHHHHhcc-hHHHHHHHHHHHHhhccc---------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--
Confidence            334444555555555553 555555555555554421         12233344444444555555555666655443  


Q ss_pred             hcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829          299 EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMAL  378 (728)
Q Consensus       299 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  378 (728)
                         +..+.    .|+..+..+...|+...|...+.++++.        .|+....|..--.+.+...+++.|..+|.++.
T Consensus       581 ---pkae~----lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llakar  645 (913)
T KOG0495|consen  581 ---PKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKAR  645 (913)
T ss_pred             ---Ccchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence               22211    2555555555566666666666666655        45555555555555555666666666666655


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829          379 DIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK  458 (728)
Q Consensus       379 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  458 (728)
                      ...+.         ..+|+.-+.+...+++.++|+.+++.+++.      .|.....|..+|+++..+++.+.|...|..
T Consensus       646 ~~sgT---------eRv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~  710 (913)
T KOG0495|consen  646 SISGT---------ERVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEMAREAYLQ  710 (913)
T ss_pred             ccCCc---------chhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            42211         223555555555666666666666666544      255555666666666666666666666666


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829          459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV  538 (728)
Q Consensus       459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  538 (728)
                      .+..        .|.....+..|+.+-...|+.-.|...++++.-.         .|.....|.....+-.+.|..++|.
T Consensus       711 G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlk---------NPk~~~lwle~Ir~ElR~gn~~~a~  773 (913)
T KOG0495|consen  711 GTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK---------NPKNALLWLESIRMELRAGNKEQAE  773 (913)
T ss_pred             cccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc---------CCCcchhHHHHHHHHHHcCCHHHHH
Confidence            5555        5555555666666666666666666666665433         2334445555555556666666666


Q ss_pred             HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHH
Q 004829          539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTIN  618 (728)
Q Consensus       539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  618 (728)
                      ....+|++-++.. |      ..+..-..+.-.-++-..+++.++++       .     ....++...|..+....+++
T Consensus       774 ~lmakALQecp~s-g------~LWaEaI~le~~~~rkTks~DALkkc-------e-----~dphVllaia~lfw~e~k~~  834 (913)
T KOG0495|consen  774 LLMAKALQECPSS-G------LLWAEAIWLEPRPQRKTKSIDALKKC-------E-----HDPHVLLAIAKLFWSEKKIE  834 (913)
T ss_pred             HHHHHHHHhCCcc-c------hhHHHHHHhccCcccchHHHHHHHhc-------c-----CCchhHHHHHHHHHHHHHHH
Confidence            6666666655544 1      11111111111112222222222222       1     11357788899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       619 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                      +|.+.|.+++++        +|+..+++..+-..+...|.-++-.+.|.++..
T Consensus       835 kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  835 KAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            999999999999        888888888888999999988888888888776

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.72  E-value=5.8e-13  Score=137.31  Aligned_cols=401  Identities=11%  Similarity=0.080  Sum_probs=251.9

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCc
Q 004829          224 FLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQD  303 (728)
Q Consensus       224 ~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  303 (728)
                      .|..+|..+... ++|.+|+.+|..|+.+      .   ++....|..++....++++|+-....-.+.+++.     +.
T Consensus        77 CwHv~gl~~R~d-K~Y~eaiKcy~nAl~~------~---~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-----~~  141 (700)
T KOG1156|consen   77 CWHVLGLLQRSD-KKYDEAIKCYRNALKI------E---KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-----PS  141 (700)
T ss_pred             hHHHHHHHHhhh-hhHHHHHHHHHHHHhc------C---CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hh
Confidence            355566666666 5899999999999986      2   4456678999999999999999998888888765     21


Q ss_pred             hhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          304 HALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE  383 (728)
Q Consensus       304 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  383 (728)
                          .-..|...+..+...|++..|....+...+....     .|.....-......|..+-..+...  ++.+++....
T Consensus       142 ----~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~-----~~s~~~~e~se~~Ly~n~i~~E~g~--~q~ale~L~~  210 (700)
T KOG1156|consen  142 ----QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT-----SPSKEDYEHSELLLYQNQILIEAGS--LQKALEHLLD  210 (700)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHh
Confidence                2335899999999999999999998887766431     2333333334444444433333332  5666666554


Q ss_pred             cCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829          384 NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAF  463 (728)
Q Consensus       384 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  463 (728)
                      ... ............+.++..++++++|...|...+..      .|+....+..+-.++.   .+....+....++...
T Consensus       211 ~e~-~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r------nPdn~~Yy~~l~~~lg---k~~d~~~~lk~ly~~l  280 (700)
T KOG1156|consen  211 NEK-QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER------NPDNLDYYEGLEKALG---KIKDMLEALKALYAIL  280 (700)
T ss_pred             hhh-HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh------CchhHHHHHHHHHHHH---HHhhhHHHHHHHHHHH
Confidence            432 22233344566789999999999999999887654      4666666666555554   2223333333333333


Q ss_pred             HHhcCCC-CHHHHHHHH--------HHHHH---HHHc-------------CChHHHHHHHHHHHHHHcCCCCCC------
Q 004829          464 KSAKGEN-HPAVASVFV--------RLADL---YHKI-------------GKLRDSKSYCENALKIYGKPNHGI------  512 (728)
Q Consensus       464 ~~~~~~~-~~~~~~~~~--------~la~~---~~~~-------------g~~~~A~~~~~~al~~~~~~~~~~------  512 (728)
                      .+.+... .|......+        .+..+   ....             .+..+. .++++.+..+.....+.      
T Consensus       281 s~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~  359 (700)
T KOG1156|consen  281 SEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFL  359 (700)
T ss_pred             hhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcc
Confidence            3222110 110000000        00000   0001             111111 14444333332222121      


Q ss_pred             ------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          513 ------PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAI  586 (728)
Q Consensus       513 ------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  586 (728)
                            .+....+.++.++.-+...|+++.|..++..|+       +..+++...|..-|.++...|++++|...+.++.
T Consensus       360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI-------dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~  432 (700)
T KOG1156|consen  360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI-------DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ  432 (700)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh-------ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence                  344567788889999999999999999999988       4556668888899999999999999999999998


Q ss_pred             HHHHHhCCCCcHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHcCChHHHHH
Q 004829          587 SKFRTSGEKKSALFGIALN-QMGLACVQRYTINEAADLFEEARTILEKEYGP-YHHDTLGVYSNLAGTYDAMGRIDDAIE  664 (728)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~La~~~~~~g~~~~A~~  664 (728)
                      ++        +.. ..+++ .-|...++.++.++|.+.....-+--....+. ...+..+....-|..|.++|++..|+.
T Consensus       433 el--------D~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK  503 (700)
T KOG1156|consen  433 EL--------DTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALK  503 (700)
T ss_pred             hc--------cch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence            76        111 12333 56777788899999988776543321100000 111222223344889999999999999


Q ss_pred             HHHHHHHHHHHHc
Q 004829          665 ILEYVVGMREEKL  677 (728)
Q Consensus       665 ~~~~al~~~~~~~  677 (728)
                      -|..+-.++.+..
T Consensus       504 kfh~i~k~~~~~~  516 (700)
T KOG1156|consen  504 KFHEIEKHYKTWS  516 (700)
T ss_pred             HHhhHHHHHHHHh
Confidence            8888877776653

>PRK12370 invasion protein regulator; Provisional

Probab=99.72  E-value=5.3e-15  Score=163.43  Aligned_cols=253  Identities=16%  Similarity=0.050  Sum_probs=202.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 004829          407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA---------RFDEAIFSYHKALTAFKSAKGENHPAVASV  477 (728)
Q Consensus       407 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  477 (728)
                      +.+++|+.+|++++.+      +|..+.++..+|.+|...+         ++++|+..+++++++        .|....+
T Consensus       275 ~~~~~A~~~~~~Al~l------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a  340 (553)
T PRK12370        275 YSLQQALKLLTQCVNM------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQA  340 (553)
T ss_pred             HHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHH
Confidence            4578999999999865      6777888999998877543         489999999999998        8888999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 004829          478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST  557 (728)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  557 (728)
                      +..+|.++...|++++|+.+|++++++         .|..+.++..+|.++...|++++|+..+++++++.+...     
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-----  406 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLL---------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-----  406 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence            999999999999999999999999999         344567889999999999999999999999999876542     


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829          558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP  637 (728)
Q Consensus       558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  637 (728)
                        ..+..++.+++..|++++|+..+++++...       ++....++..+|.++..+|++++|...+.++...       
T Consensus       407 --~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-------  470 (553)
T PRK12370        407 --AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-------  470 (553)
T ss_pred             --hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-------
Confidence              233345666778999999999999987651       1223467888999999999999999999887665       


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829          638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN  716 (728)
Q Consensus       638 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~  716 (728)
                       .|....+...++..|...|  ++|...+++.++.....  +.++      ..++.+|.-.|+.+.+. .. +.+.+.+
T Consensus       471 -~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~~~~-~~-~~~~~~~  536 (553)
T PRK12370        471 -EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAIAEK-MW-NKFKNED  536 (553)
T ss_pred             -cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhHHHH-HH-HHhhccc
Confidence             6677778888999999888  48888888877654322  1122      22778888888888887 44 5554443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.72  E-value=3.4e-17  Score=165.64  Aligned_cols=266  Identities=21%  Similarity=0.181  Sum_probs=114.1

Q ss_pred             HHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHH
Q 004829          271 VLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRV  350 (728)
Q Consensus       271 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  350 (728)
                      .+|.+++..|++++|++++.+.+...   .++..    ...|..+|.+....++++.|+..|++++..        ++..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~---~~~~~----~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~   77 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKI---APPDD----PEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKAN   77 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccc---ccccc----cccccccccccccccccccccccccccccc--------cccc
Confidence            56999999999999999997655432   01222    234888999999999999999999999887        4455


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCh
Q 004829          351 GETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL  430 (728)
Q Consensus       351 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  430 (728)
                      ...+..++.+ ...+++++|..++.++.+..+..         ..+..+..++...++++++...+.++...    ...+
T Consensus        78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---------~~l~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~  143 (280)
T PF13429_consen   78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---------RYLLSALQLYYRLGDYDEAEELLEKLEEL----PAAP  143 (280)
T ss_dssp             --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-----T---
T ss_pred             cccccccccc-ccccccccccccccccccccccc---------chhhHHHHHHHHHhHHHHHHHHHHHHHhc----cCCC
Confidence            5566677776 68999999999998887654321         23555667889999999999999886532    2234


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829          431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH  510 (728)
Q Consensus       431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  510 (728)
                      .....+..+|.++...|++++|+..|+++++.        .|....+...++.++...|+++++...+........    
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~----  211 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP----  211 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H----
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc----
Confidence            56778999999999999999999999999999        888888999999999999999999888888877742    


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF  589 (728)
Q Consensus       511 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  589 (728)
                           .....+..+|.+|...|++++|+.+|++++...+..       ..++..+|.++...|++++|..++++++...
T Consensus       212 -----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  212 -----DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             -----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--------HHHHHHHHHHHT-------------------
T ss_pred             -----CHHHHHHHHHHHhccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence                 223456788999999999999999999999876655       5677899999999999999999999988653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.72  E-value=2.5e-14  Score=136.83  Aligned_cols=345  Identities=15%  Similarity=0.120  Sum_probs=276.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH  348 (728)
Q Consensus       269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  348 (728)
                      ...-|.-++...++++|+..+.+.+...      ++....+..+-.+..+...+|.|++++.+--..++.+...  ++..
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l------~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~   80 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKL------SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSD   80 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHH------HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            3445777788899999999999988764      2233456678888999999999999998887777776654  3345


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 004829          349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH  428 (728)
Q Consensus       349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  428 (728)
                      ...+++.+++..+....++.+++.+....+.+-..... ...  ...+..+|..+..++.|++++++|+.|+.++...++
T Consensus        81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~-~~~--gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D  157 (518)
T KOG1941|consen   81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG-QLG--GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD  157 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc-ccc--chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence            66789999999999999999999988877765332221 111  234667999999999999999999999999999988


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN--HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (728)
                      ......++..||.+|....++++|+-+..+|+++.....-++  ......+++.++..+..+|+.-.|.++++++.++.-
T Consensus       158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal  237 (518)
T KOG1941|consen  158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL  237 (518)
T ss_pred             ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            888889999999999999999999999999999987764222  233566788999999999999999999999999987


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHH-----HHHH
Q 004829          507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSD-----SYNT  581 (728)
Q Consensus       507 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~  581 (728)
                      ..+   +.+..+..+..+|.+|...|+.+.|..-|+.|..+.... ++.-....++...+.++....-..+     |++.
T Consensus       238 ~~G---dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~  313 (518)
T KOG1941|consen  238 QHG---DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALEF  313 (518)
T ss_pred             HhC---ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence            754   567788899999999999999999999999999988776 6555555666666776655444444     9999


Q ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          582 LKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       582 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      -.+++++...++.+.  ..-.....++.+|..+|.-++-...+..+-+.
T Consensus       314 n~r~levA~~IG~K~--~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~  360 (518)
T KOG1941|consen  314 NTRLLEVASSIGAKL--SVLKLHCRLASIYRSKGLQDELRAHVVRAHEC  360 (518)
T ss_pred             HHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            999999999888763  34578889999999998877777776665544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.72  E-value=8.9e-14  Score=142.70  Aligned_cols=426  Identities=14%  Similarity=0.042  Sum_probs=299.0

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh
Q 004829          218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV  297 (728)
Q Consensus       218 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  297 (728)
                      -|.....+...+..--..| +.+....+..+++..+..-+-.    -....|..-|..+-..|-.-.+......++.+..
T Consensus       436 iptd~~IWitaa~LEE~ng-n~~mv~kii~rgl~~L~~ngv~----i~rdqWl~eAe~~e~agsv~TcQAIi~avigigv  510 (913)
T KOG0495|consen  436 IPTDREIWITAAKLEEANG-NVDMVEKIIDRGLSELQANGVE----INRDQWLKEAEACEDAGSVITCQAIIRAVIGIGV  510 (913)
T ss_pred             CCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhccee----ecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Confidence            4566677777888888887 8999999999998887664321    1233455667777777777777777777776643


Q ss_pred             hhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA  377 (728)
Q Consensus       298 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  377 (728)
                      ...+      ....|+.-+..+...+.++-|...|..+++.        .|..-..|...+..-...|..+.-..+++++
T Consensus       511 Eeed------~~~tw~~da~~~~k~~~~~carAVya~alqv--------fp~k~slWlra~~~ek~hgt~Esl~Allqka  576 (913)
T KOG0495|consen  511 EEED------RKSTWLDDAQSCEKRPAIECARAVYAHALQV--------FPCKKSLWLRAAMFEKSHGTRESLEALLQKA  576 (913)
T ss_pred             ccch------hHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            2211      2334778888888888888888888888887        5566667777777777777788888888888


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829          378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYH  457 (728)
Q Consensus       378 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  457 (728)
                      +...|+...        .|...+..++..|+...|...+.++++.      .|..-.+|..--.+.....+++.|..+|.
T Consensus       577 v~~~pkae~--------lwlM~ake~w~agdv~~ar~il~~af~~------~pnseeiwlaavKle~en~e~eraR~lla  642 (913)
T KOG0495|consen  577 VEQCPKAEI--------LWLMYAKEKWKAGDVPAARVILDQAFEA------NPNSEEIWLAAVKLEFENDELERARDLLA  642 (913)
T ss_pred             HHhCCcchh--------HHHHHHHHHHhcCCcHHHHHHHHHHHHh------CCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence            877765431        3556667777778888888887777654      34444556666666777777888888877


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829          458 KALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA  537 (728)
Q Consensus       458 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  537 (728)
                      ++...         .....+++.-+.+...+++.++|+.+++++++.+         |.....|..+|.++..+++.+.|
T Consensus       643 kar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f---------p~f~Kl~lmlGQi~e~~~~ie~a  704 (913)
T KOG0495|consen  643 KARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF---------PDFHKLWLMLGQIEEQMENIEMA  704 (913)
T ss_pred             HHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC---------CchHHHHHHHhHHHHHHHHHHHH
Confidence            77653         2345667777777777788888888888888774         34566777788888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829          538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI  617 (728)
Q Consensus       538 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  617 (728)
                      ...|...++.++..       .-.+..|+.+-.+.|+.-.|...++++.-.        +|.....|...-+.-++.|+.
T Consensus       705 R~aY~~G~k~cP~~-------ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~  769 (913)
T KOG0495|consen  705 REAYLQGTKKCPNS-------IPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNALLWLESIRMELRAGNK  769 (913)
T ss_pred             HHHHHhccccCCCC-------chHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCH
Confidence            88887777766655       235566777777777778887777777543        233345555555666677777


Q ss_pred             HHHHHHHHHHHHHHHHhc--------CCC--------------ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829          618 NEAADLFEEARTILEKEY--------GPY--------------HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE  675 (728)
Q Consensus       618 ~~A~~~~~~al~~~~~~~--------~~~--------------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~  675 (728)
                      +.|..+..+|++-+....        -..              -.....++..+|.++....++++|.++|.+++.+   
T Consensus       770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~---  846 (913)
T KOG0495|consen  770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK---  846 (913)
T ss_pred             HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence            777777777765422110        000              0011236778999999999999999999999995   


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          676 KLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       676 ~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                           .|+..+++..+-..+...|.-++-. ..+.......|+
T Consensus       847 -----d~d~GD~wa~fykfel~hG~eed~k-ev~~~c~~~EP~  883 (913)
T KOG0495|consen  847 -----DPDNGDAWAWFYKFELRHGTEEDQK-EVLKKCETAEPT  883 (913)
T ss_pred             -----CCccchHHHHHHHHHHHhCCHHHHH-HHHHHHhccCCC
Confidence                 4888888888888999999888887 777776665554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.72  E-value=5.3e-17  Score=164.25  Aligned_cols=268  Identities=20%  Similarity=0.179  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE  391 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  391 (728)
                      .+.+|.+++..|++++|++++.+.+....      +|.....|..+|.+....++++.|+..|++++...+...      
T Consensus        11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~------   78 (280)
T PF13429_consen   11 ALRLARLLYQRGDYEKALEVLKKAAQKIA------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP------   78 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc------
Confidence            34679999999999999999977655521      356667888899999999999999999999997755432      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                        ..+..++.+ ...+++++|+.++.++.+..       .....+..+..++...++++++...++++...      ...
T Consensus        79 --~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~  142 (280)
T PF13429_consen   79 --QDYERLIQL-LQDGDPEEALKLAEKAYERD-------GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAA  142 (280)
T ss_dssp             -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T--
T ss_pred             --ccccccccc-cccccccccccccccccccc-------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCC
Confidence              235556666 68999999999988765431       12344556777889999999999999997753      224


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      +.....+..+|.++...|++++|+.+|+++++.         .|....+...++.++...|+++++...+.......+..
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~  213 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALEL---------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD  213 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence            566788999999999999999999999999999         34456678889999999999999988888887776544


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL  631 (728)
Q Consensus       552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  631 (728)
                      +       .++..+|.+|..+|++++|+.+|++++..        .+....++..+|.++...|+.++|..++++++...
T Consensus       214 ~-------~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  214 P-------DLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             C-------CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred             H-------HHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccc
Confidence            2       24467899999999999999999999987        44456788999999999999999999999988753

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.71  E-value=2.1e-15  Score=136.44  Aligned_cols=211  Identities=16%  Similarity=0.116  Sum_probs=185.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      ......+...||.-|+..|++..|...+++|+++         +|....+|..++.+|...|+.+.|.+.|++|+.+.++
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~  101 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN  101 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence            4456778899999999999999999999999999         5667889999999999999999999999999999877


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      .       ..++++.|..++.+|++++|...|++|+..      +.-...+..+.++|.|.++.|+++.|.++|++++++
T Consensus       102 ~-------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         102 N-------GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             c-------cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            6       568899999999999999999999999864      223345678999999999999999999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004829          631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLV  710 (728)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~  710 (728)
                              +|+.......++..+...|++-.|..++++.....        +-.++.+.....+-...|+.+.|- ++-.
T Consensus       169 --------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~--------~~~A~sL~L~iriak~~gd~~~a~-~Y~~  231 (250)
T COG3063         169 --------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRG--------GAQAESLLLGIRIAKRLGDRAAAQ-RYQA  231 (250)
T ss_pred             --------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence                    88888899999999999999999999999887632        355667777778888999999988 8888


Q ss_pred             HHHhhccccc
Q 004829          711 TFLDSNSQNL  720 (728)
Q Consensus       711 ~ll~~~~~~~  720 (728)
                      .|....|...
T Consensus       232 qL~r~fP~s~  241 (250)
T COG3063         232 QLQRLFPYSE  241 (250)
T ss_pred             HHHHhCCCcH
Confidence            8887777654

>TIGR00540 hemY_coli hemY protein

Probab=99.71  E-value=2e-14  Score=153.09  Aligned_cols=309  Identities=11%  Similarity=-0.034  Sum_probs=228.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE  391 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  391 (728)
                      ....|......|+++.|.+.+.++.+.        .|.....+...|.++...|+++.|..++.++.+..+...      
T Consensus        87 ~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~------  152 (409)
T TIGR00540        87 QTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN------  152 (409)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc------
Confidence            456677888899999999999888776        455556677889999999999999999999986554332      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                       ..+....+.++...|++++|+..++.....      .|....++..++.++...|++++|...+.+.++..     ...
T Consensus       153 -l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~~  220 (409)
T TIGR00540       153 -ILVEIARTRILLAQNELHAARHGVDKLLEM------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LFD  220 (409)
T ss_pred             -hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCC
Confidence             012344589999999999999999887754      46666789999999999999999999998887651     112


Q ss_pred             HHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          472 PAVA-SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       472 ~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      +... ........-+...+..+++...+..+......     ..+.....+..++..+...|++++|...++++++..++
T Consensus       221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~-----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd  295 (409)
T TIGR00540       221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR-----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD  295 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH-----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Confidence            3222 22222222223444555555666666655311     11235678888999999999999999999999998765


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG--IALNQMGLACVQRYTINEAADLFEE--  626 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~--  626 (728)
                      .....     ............++...+++.++++++.        .+..+  ..+..+|.+++..|++++|.++|++  
T Consensus       296 ~~~~~-----~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~  362 (409)
T TIGR00540       296 DRAIS-----LPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA  362 (409)
T ss_pred             cccch-----hHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence            42110     0112333344567888888888888865        23334  6788999999999999999999994  


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          627 ARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       627 al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      +++.        +|+... +..+|.++.+.|+.++|.++|++++...
T Consensus       363 a~~~--------~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~  400 (409)
T TIGR00540       363 ACKE--------QLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM  400 (409)
T ss_pred             Hhhc--------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            6655        666554 5599999999999999999999998754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK12370 invasion protein regulator; Provisional

Probab=99.71  E-value=3.8e-15  Score=164.58  Aligned_cols=262  Identities=11%  Similarity=-0.040  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CChhHHHHHHHHhh
Q 004829          225 LLKQTREMISSG--ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSL---------GQYNEAIPVLERSV  293 (728)
Q Consensus       225 l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al  293 (728)
                      ++..|...+...  +++++|+.+|++|+.+         +|..+.++..+|.+|...         +++++|+..+++++
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNM---------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhc---------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            444454444332  3578999999999875         255577788888887644         34789999999999


Q ss_pred             hhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 004829          294 EIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKI  373 (728)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  373 (728)
                      ++.     ++++.    ++..+|.++...|++++|+.+|++++++        +|....+++.+|.++...|++++|+..
T Consensus       332 ~ld-----P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~  394 (553)
T PRK12370        332 ELD-----HNNPQ----ALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQT  394 (553)
T ss_pred             hcC-----CCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            885     55544    4889999999999999999999999999        788889999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHH
Q 004829          374 CQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAI  453 (728)
Q Consensus       374 ~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  453 (728)
                      +++++++.|....        .+..++.+++..|++++|+..+++++...     .|.....+..+|.++..+|++++|.
T Consensus       395 ~~~Al~l~P~~~~--------~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-----~p~~~~~~~~la~~l~~~G~~~eA~  461 (553)
T PRK12370        395 INECLKLDPTRAA--------AGITKLWITYYHTGIDDAIRLGDELRSQH-----LQDNPILLSMQVMFLSLKGKHELAR  461 (553)
T ss_pred             HHHHHhcCCCChh--------hHHHHHHHHHhccCHHHHHHHHHHHHHhc-----cccCHHHHHHHHHHHHhCCCHHHHH
Confidence            9999998765421        23445566777999999999998876431     2455667889999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC
Q 004829          454 FSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE  533 (728)
Q Consensus       454 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  533 (728)
                      ..+.+.+..        .|....+...++..|...|  ++|...+++.++.....         ......++.+|.-.|+
T Consensus       462 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~---------~~~~~~~~~~~~~~g~  522 (553)
T PRK12370        462 KLTKEISTQ--------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI---------DNNPGLLPLVLVAHGE  522 (553)
T ss_pred             HHHHHhhhc--------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh---------hcCchHHHHHHHHHhh
Confidence            999887665        6777778888898888888  48888888877764331         1112236777888888


Q ss_pred             HHHHHHHHHHHH
Q 004829          534 LEQAVKLLNKAL  545 (728)
Q Consensus       534 ~~~A~~~~~~al  545 (728)
                      -+.+..+ +++.
T Consensus       523 ~~~~~~~-~~~~  533 (553)
T PRK12370        523 AIAEKMW-NKFK  533 (553)
T ss_pred             hHHHHHH-HHhh
Confidence            8777766 5544

>TIGR00540 hemY_coli hemY protein

Probab=99.70  E-value=3.4e-14  Score=151.29  Aligned_cols=318  Identities=11%  Similarity=0.024  Sum_probs=225.7

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC
Q 004829          222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG  301 (728)
Q Consensus       222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  301 (728)
                      +......|...+..| +++.|.+...++.+.       .+.|  ...+...|.++...|+++.|..++.++.+..     
T Consensus        84 ~~~~~~~glla~~~g-~~~~A~~~l~~~~~~-------~~~~--~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----  148 (409)
T TIGR00540        84 AQKQTEEALLKLAEG-DYAKAEKLIAKNADH-------AAEP--VLNLIKAAEAAQQRGDEARANQHLEEAAELA-----  148 (409)
T ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHhhc-------CCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence            445577788888997 999999999887664       2222  4456678999999999999999999987653     


Q ss_pred             CchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829          302 QDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH  381 (728)
Q Consensus       302 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  381 (728)
                      +...   ..+....+.++...|+++.|...++..++.        .|....++..++.++...|++++|...+.+.++..
T Consensus       149 p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~  217 (409)
T TIGR00540       149 GNDN---ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG  217 (409)
T ss_pred             CcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            2221   122455699999999999999999999888        67788899999999999999999999998888652


Q ss_pred             HHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829          382 RENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALT  461 (728)
Q Consensus       382 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  461 (728)
                      ..  .+...  .........-....+..+++...+..+.....  ...+....++..++..+...|++++|+..++++++
T Consensus       218 ~~--~~~~~--~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p--~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~  291 (409)
T TIGR00540       218 LF--DDEEF--ADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP--RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK  291 (409)
T ss_pred             CC--CHHHH--HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC--HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence            11  11111  11111122222333344444445554443210  01123567888999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          462 AFKSAKGENHPAVASV--FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVK  539 (728)
Q Consensus       462 ~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  539 (728)
                      .        .|+....  ...........++...++..++++++...      +++. +..+..+|.+++..|++++|.+
T Consensus       292 ~--------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p------~~~~-~~ll~sLg~l~~~~~~~~~A~~  356 (409)
T TIGR00540       292 K--------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD------DKPK-CCINRALGQLLMKHGEFIEAAD  356 (409)
T ss_pred             h--------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC------CChh-HHHHHHHHHHHHHcccHHHHHH
Confidence            7        3433321  12222333445788899999999988721      2332 3778899999999999999999


Q ss_pred             HHHH--HHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829          540 LLNK--ALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE  594 (728)
Q Consensus       540 ~~~~--al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  594 (728)
                      +|++  +++..++        ...+..+|.++...|+.++|.++|++++...-..++
T Consensus       357 ~le~a~a~~~~p~--------~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~  405 (409)
T TIGR00540       357 AFKNVAACKEQLD--------ANDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD  405 (409)
T ss_pred             HHHHhHHhhcCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence            9995  5444322        123558999999999999999999999887655443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.69  E-value=5.9e-15  Score=145.24  Aligned_cols=205  Identities=17%  Similarity=0.131  Sum_probs=170.8

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      ....+..+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++....  
T Consensus        27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--   96 (234)
T TIGR02521        27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--   96 (234)
T ss_pred             CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--
Confidence            4455778899999999999999999999999887        677788899999999999999999999999998832  


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                             .....+..+|.++...|++++|+.++++++....     .......+..+|.++...|++++|..++.+++..
T Consensus        97 -------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  164 (234)
T TIGR02521        97 -------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI  164 (234)
T ss_pred             -------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                   2345788899999999999999999999986421     1222456778999999999999999999999886


Q ss_pred             HHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829          589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEY  668 (728)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~  668 (728)
                      .        +....++..+|.++...|++++|..++++++..        .|.....+..++.++...|+.++|..+.+.
T Consensus       165 ~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  228 (234)
T TIGR02521       165 D--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGAQ  228 (234)
T ss_pred             C--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            2        223457888999999999999999999999887        344455667889999999999999998877


Q ss_pred             HHH
Q 004829          669 VVG  671 (728)
Q Consensus       669 al~  671 (728)
                      +..
T Consensus       229 ~~~  231 (234)
T TIGR02521       229 LQK  231 (234)
T ss_pred             HHh
Confidence            655

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.69  E-value=7.6e-15  Score=148.66  Aligned_cols=248  Identities=15%  Similarity=0.105  Sum_probs=179.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 004829          406 KGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY  485 (728)
Q Consensus       406 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  485 (728)
                      .+..+.++..+.+++...  ..++...+..++.+|.+|...|++++|+..|++++++        .|....+++.+|.++
T Consensus        39 ~~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~  108 (296)
T PRK11189         39 TLQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYL  108 (296)
T ss_pred             chHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHH
Confidence            345677777777766332  1234456788999999999999999999999999998        888899999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 004829          486 HKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM  565 (728)
Q Consensus       486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  565 (728)
                      ...|++++|+..|++++++         .|....++.++|.++...|++++|+..|++++++.+..+     ....   .
T Consensus       109 ~~~g~~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~---~  171 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLEL---------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----YRAL---W  171 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---H
Confidence            9999999999999999998         344567899999999999999999999999998866542     1111   1


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004829          566 GVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV  645 (728)
Q Consensus       566 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  645 (728)
                      ..++...+++++|+..|.+++...    .  +.    .+ ..+.++...|++.++ ..++.+.+.+.... ...|....+
T Consensus       172 ~~l~~~~~~~~~A~~~l~~~~~~~----~--~~----~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea  238 (296)
T PRK11189        172 LYLAESKLDPKQAKENLKQRYEKL----D--KE----QW-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCET  238 (296)
T ss_pred             HHHHHccCCHHHHHHHHHHHHhhC----C--cc----cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHH
Confidence            223455788999999998766431    1  11    11 134555556665443 23333332110000 004566789


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829          646 YSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR  700 (728)
Q Consensus       646 ~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  700 (728)
                      |++||.++..+|++++|+.+|++++.+       +-|+..+..+.+.++....++
T Consensus       239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~-------~~~~~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        239 YFYLAKYYLSLGDLDEAAALFKLALAN-------NVYNFVEHRYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCchHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999984       224666666666666555444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.69  E-value=7.2e-15  Score=144.65  Aligned_cols=207  Identities=20%  Similarity=0.208  Sum_probs=174.7

Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      ....+..+..+|.++...|++++|+..+++++...         |....++..+|.++...|++++|+.+++++++..+.
T Consensus        27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~   97 (234)
T TIGR02521        27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD---------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN   97 (234)
T ss_pred             CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45567889999999999999999999999998872         335678889999999999999999999999987554


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      .       ..++..+|.++...|++++|+.++++++....      .+.....+..+|.++...|++++|..+|.+++..
T Consensus        98 ~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  164 (234)
T TIGR02521        98 N-------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI  164 (234)
T ss_pred             C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3       35778899999999999999999999986411      1223457888999999999999999999999988


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004829          631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLV  710 (728)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~  710 (728)
                              .|....++..+|.++...|++++|..++++++.+.        |.....+..++.++...|+.++|. .+.+
T Consensus       165 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~-~~~~  227 (234)
T TIGR02521       165 --------DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY--------NQTAESLWLGIRIARALGDVAAAQ-RYGA  227 (234)
T ss_pred             --------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence                    66667788999999999999999999999998852        344566678899999999999999 7777


Q ss_pred             HHHhhc
Q 004829          711 TFLDSN  716 (728)
Q Consensus       711 ~ll~~~  716 (728)
                      .+....
T Consensus       228 ~~~~~~  233 (234)
T TIGR02521       228 QLQKLF  233 (234)
T ss_pred             HHHhhC
Confidence            765543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.69  E-value=6.2e-15  Score=133.43  Aligned_cols=207  Identities=18%  Similarity=0.136  Sum_probs=182.9

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829          308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP  387 (728)
Q Consensus       308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  387 (728)
                      ...+...||.-|...|++..|..-++++|+.        +|....+|..+|.+|...|+.+.|.+.|++|+.+.+..++ 
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd-  104 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD-  104 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc-
Confidence            4456899999999999999999999999999        9999999999999999999999999999999999888764 


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829          388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK  467 (728)
Q Consensus       388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  467 (728)
                             ++++.|..++.+|++++|...|++|+..    +.-+....++.|+|.|.++.|+++.|..+|++++++     
T Consensus       105 -------VLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~-----  168 (250)
T COG3063         105 -------VLNNYGAFLCAQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL-----  168 (250)
T ss_pred             -------hhhhhhHHHHhCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-----
Confidence                   6999999999999999999999999753    445677889999999999999999999999999999     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI  547 (728)
Q Consensus       468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  547 (728)
                         .|........++..++..|+|..|..++++......         ..+..+.....+-...|+-+.|-.+=.+....
T Consensus       169 ---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~---------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         169 ---DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG---------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             ---CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence               888888999999999999999999999998766532         24566666777888899988888877766666


Q ss_pred             HhcC
Q 004829          548 YGKT  551 (728)
Q Consensus       548 ~~~~  551 (728)
                      ++..
T Consensus       237 fP~s  240 (250)
T COG3063         237 FPYS  240 (250)
T ss_pred             CCCc
Confidence            6544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.5e-12  Score=132.84  Aligned_cols=432  Identities=12%  Similarity=0.111  Sum_probs=272.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829          223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ  302 (728)
Q Consensus       223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  302 (728)
                      ..++.-...+...| +|++|+....+.+...         |+...+++.--.+....++|++|+.+.+.-....     .
T Consensus        13 ~~l~t~ln~~~~~~-e~e~a~k~~~Kil~~~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-----~   77 (652)
T KOG2376|consen   13 EALLTDLNRHGKNG-EYEEAVKTANKILSIV---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-----V   77 (652)
T ss_pred             HHHHHHHHHhccch-HHHHHHHHHHHHHhcC---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-----h
Confidence            45666666677776 8999999999998752         3345566777788899999999996665533221     1


Q ss_pred             chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR  382 (728)
Q Consensus       303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  382 (728)
                      .+     ...+..+.|.++++..++|+..++-+           ++....++...|++++.+|+|++|...|+....-..
T Consensus        78 ~~-----~~~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen   78 IN-----SFFFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             cc-----hhhHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            11     11378899999999999999998821           223344667789999999999999999998764322


Q ss_pred             HcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829          383 ENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE-LDVASIDCSIGDAYLSLARFDEAIFSYHKALT  461 (728)
Q Consensus       383 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  461 (728)
                      ...     ..-.-.+.++..-...++             .....+.. ......+++.|.++...|+|.+|++.+++++.
T Consensus       142 dd~-----d~~~r~nl~a~~a~l~~~-------------~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  142 DDQ-----DEERRANLLAVAAALQVQ-------------LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             chH-----HHHHHHHHHHHHHhhhHH-------------HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            211     111111122211111111             11111222 33567889999999999999999999999999


Q ss_pred             HHHHhcCCCC-------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829          462 AFKSAKGENH-------PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL  534 (728)
Q Consensus       462 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  534 (728)
                      ++++.+..++       .....+...|+.++..+|+..+|...|...+.....     +.+..+.+-++|..+-....-+
T Consensus       204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-----D~~~~Av~~NNLva~~~d~~~~  278 (652)
T KOG2376|consen  204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-----DEPSLAVAVNNLVALSKDQNYF  278 (652)
T ss_pred             HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-----CchHHHHHhcchhhhccccccC
Confidence            9988764432       235567889999999999999999999988876322     3334444444443221111111


Q ss_pred             H---------------------------HHH-----------HHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCH
Q 004829          535 E---------------------------QAV-----------KLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNY  575 (728)
Q Consensus       535 ~---------------------------~A~-----------~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~  575 (728)
                      +                           +++           ..-.++.++....++..+ ....++. ......+...+
T Consensus       279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll-~~~t~~~~~~~  357 (652)
T KOG2376|consen  279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILL-QEATKVREKKH  357 (652)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHH-HHHHHHHHHHH
Confidence            1                           000           000112222222222221 1111111 11111111133


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHH
Q 004829          576 SDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP--YHHDTLGVYSNLAGTY  653 (728)
Q Consensus       576 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~La~~~  653 (728)
                      .+|..++       ......++.....+...++.+...+|+++.|++.+...+......+..  ..|.   +-..+-.+|
T Consensus       358 ~ka~e~L-------~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~---~V~aiv~l~  427 (652)
T KOG2376|consen  358 KKAIELL-------LQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG---TVGAIVALY  427 (652)
T ss_pred             hhhHHHH-------HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh---HHHHHHHHH
Confidence            3343333       333333344345678888999999999999999999555333222211  2333   334556678


Q ss_pred             HHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          654 DAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       654 ~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                      .+.++.+-|...+.+|+..++..... .+.....+..++.+-.+.|+-++|. ..++.++..+|..++
T Consensus       428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~-s~leel~k~n~~d~~  493 (652)
T KOG2376|consen  428 YKIKDNDSASAVLDSAIKWWRKQQTG-SIALLSLMREAAEFKLRHGNEEEAS-SLLEELVKFNPNDTD  493 (652)
T ss_pred             HhccCCccHHHHHHHHHHHHHHhccc-chHHHhHHHHHhHHHHhcCchHHHH-HHHHHHHHhCCchHH
Confidence            88888889999999999988776543 3667777888899999999999999 999999998776543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.68  E-value=2.2e-13  Score=129.00  Aligned_cols=306  Identities=13%  Similarity=0.094  Sum_probs=237.8

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHH
Q 004829          313 MQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEE  392 (728)
Q Consensus       313 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  392 (728)
                      +..|.-+....+.++|+..|..+++.        +|...++...||..|...|..+.|+.+-+..++.    ++......
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr  106 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQR  106 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHH
Confidence            45566677788999999999999987        8999999999999999999999999987766532    22233345


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829          393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP  472 (728)
Q Consensus       393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  472 (728)
                      ..++..||.-|...|-++.|...|....+.      ......++..|..+|....+|++|++..++...+-.+.   ...
T Consensus       107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~~~  177 (389)
T COG2956         107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---YRV  177 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---chh
Confidence            667899999999999999999999876532      33445678899999999999999999988887763332   356


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829          473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP  552 (728)
Q Consensus       473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  552 (728)
                      ..+..|..||..+....+.+.|...+.+|++.         ++..+.+-..+|.++...|+|+.|++.++.+++-.+.  
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa---------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~--  246 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQA---------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE--  246 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH--
Confidence            78889999999999999999999999999998         4446677888999999999999999999998875443  


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE  632 (728)
Q Consensus       553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  632 (728)
                          .+..+...|..+|..+|+.++.+..+.++.+...         -..+...++..-....-.+.|..++.+-+..  
T Consensus       247 ----yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~---------g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--  311 (389)
T COG2956         247 ----YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT---------GADAELMLADLIELQEGIDAAQAYLTRQLRR--  311 (389)
T ss_pred             ----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC---------CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence                4567888899999999999999999999987621         1234555666666667778888888777776  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHH
Q 004829          633 KEYGPYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEYVVG  671 (728)
Q Consensus       633 ~~~~~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~al~  671 (728)
                            +|.....+..+..-...  -|...+.+..++..+.
T Consensus       312 ------~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         312 ------KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             ------CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence                  88766444433322222  2345555555555554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.67  E-value=6.9e-14  Score=132.31  Aligned_cols=272  Identities=16%  Similarity=0.195  Sum_probs=209.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC--CHHHH
Q 004829          398 LMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN--HPAVA  475 (728)
Q Consensus       398 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~  475 (728)
                      ..|.-+....+.++|+..|...++      .++....+...||.+|...|..+.|+...+..++.      ++  .....
T Consensus        40 v~GlNfLLs~Q~dKAvdlF~e~l~------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~qr~  107 (389)
T COG2956          40 VKGLNFLLSNQPDKAVDLFLEMLQ------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES------PDLTFEQRL  107 (389)
T ss_pred             HhHHHHHhhcCcchHHHHHHHHHh------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC------CCCchHHHH
Confidence            456666777888999999877664      36777888999999999999999999988777664      22  23356


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004829          476 SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ  555 (728)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  555 (728)
                      .++..||.-|...|-++.|...|....+.         ......++..|..+|....++++|++..++...+.++.  ..
T Consensus       108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de---------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~--~~  176 (389)
T COG2956         108 LALQQLGRDYMAAGLLDRAEDIFNQLVDE---------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT--YR  176 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhcc---------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc--ch
Confidence            78889999999999999999999887664         33455678888999999999999999888877765443  23


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004829          556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEY  635 (728)
Q Consensus       556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  635 (728)
                      ..++..|..++..+....+++.|...+.+|++.        ++....+-..+|.++...|+|+.|++.++.+++-     
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----  243 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-----  243 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-----
Confidence            467888888999999999999999999999887        4556677888999999999999999999998886     


Q ss_pred             CCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829          636 GPYHHD-TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD  714 (728)
Q Consensus       636 ~~~~~~-~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~  714 (728)
                         +|+ ...+...|..+|.++|+.++.+.++.++.+..        + ..++...++.+-....-.+.|. .++...+.
T Consensus       244 ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--------~-g~~~~l~l~~lie~~~G~~~Aq-~~l~~Ql~  310 (389)
T COG2956         244 ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--------T-GADAELMLADLIELQEGIDAAQ-AYLTRQLR  310 (389)
T ss_pred             ---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--------C-CccHHHHHHHHHHHhhChHHHH-HHHHHHHh
Confidence               555 45678889999999999999999999988743        1 1233344555555555566666 55555555


Q ss_pred             hccc
Q 004829          715 SNSQ  718 (728)
Q Consensus       715 ~~~~  718 (728)
                      .+|+
T Consensus       311 r~Pt  314 (389)
T COG2956         311 RKPT  314 (389)
T ss_pred             hCCc
Confidence            5554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.67  E-value=2.3e-13  Score=143.39  Aligned_cols=332  Identities=12%  Similarity=0.016  Sum_probs=234.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829          311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI  390 (728)
Q Consensus       311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  390 (728)
                      .+..+|.++...|+++.+...+.++......     ...........+.++...|++++|...++++++..|...     
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-----   77 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-----   77 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----
Confidence            4889999999999999998888888877543     334555677788999999999999999999998765432     


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN  470 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  470 (728)
                         .++.. +..+...|++..+.....+++..  ..+..+.....+..+|.++...|++++|+..+++++++        
T Consensus        78 ---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------  143 (355)
T cd05804          78 ---LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------  143 (355)
T ss_pred             ---HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------
Confidence               12332 55555566555555555444433  34556777888889999999999999999999999998        


Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .|....++..+|.++...|++++|+.++++++.....     ........+..+|.++...|++++|+..|++++...+.
T Consensus       144 ~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         144 NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE  218 (355)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence            7777888999999999999999999999999987533     12233456788999999999999999999998543221


Q ss_pred             CCCCCCcHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEA--QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEAR  628 (728)
Q Consensus       551 ~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  628 (728)
                          .......+.  .+...+...|....+... +.+..........  ......-...+.++...|+.++|...++...
T Consensus       219 ----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~  291 (355)
T cd05804         219 ----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDALDKLLAALK  291 (355)
T ss_pred             ----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence                111111111  223333444543333322 2222222111111  1122233467888899999999999999987


Q ss_pred             HHHHHhc-CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829          629 TILEKEY-GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG  678 (728)
Q Consensus       629 ~~~~~~~-~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~  678 (728)
                      ....... .........+....|.++...|++++|+..+..++.+...+-|
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~gg  342 (355)
T cd05804         292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGG  342 (355)
T ss_pred             HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            7654410 0112234567778899999999999999999999998866544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.67  E-value=2.2e-13  Score=143.49  Aligned_cols=338  Identities=11%  Similarity=0.006  Sum_probs=233.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          262 SLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ  341 (728)
Q Consensus       262 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  341 (728)
                      +|+.+.++..+|.++...|+++.|...+.++........  .    ........+.++...|++++|...++++++.   
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~---   72 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA--T----ERERAHVEALSAWIAGDLPKALALLEQLLDD---   72 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence            367788899999999999999999888888887653211  1    1233667889999999999999999999988   


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASM  421 (728)
Q Consensus       342 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  421 (728)
                           .|....++.. +..+...|++..+.....+++...    .+..+.....+..+|.++...|++++|+..+++++.
T Consensus        73 -----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~  142 (355)
T cd05804          73 -----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE  142 (355)
T ss_pred             -----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                 5665555554 666666666655555555555431    112233345677889999999999999999999987


Q ss_pred             HHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          422 SMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENA  501 (728)
Q Consensus       422 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  501 (728)
                      +      .|....++..+|.++...|++++|+.++++++.....    +.......+..+|.++...|++++|+..|+++
T Consensus       143 ~------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         143 L------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             h------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            6      3455678899999999999999999999999987322    12233456778999999999999999999998


Q ss_pred             HHHHcCCCCCCCcHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHHHcCCHHHH
Q 004829          502 LKIYGKPNHGIPSEEIASG--LIDIAAIYQSMNELEQAVKLLNKALKIYGKT-PGQQSTIAGIEAQMGVMYYMTGNYSDS  578 (728)
Q Consensus       502 l~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A  578 (728)
                      +.....      .......  ...+...+...|....+..+ +.+....... .+  ..........+.++...|+.++|
T Consensus       213 ~~~~~~------~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a  283 (355)
T cd05804         213 IAPSAE------SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDAL  283 (355)
T ss_pred             hccccC------CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHH
Confidence            644211      1111111  11223333444433333222 2222222111 12  21222223678888999999999


Q ss_pred             HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829          579 YNTLKSAISKFRTSG-EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP  637 (728)
Q Consensus       579 ~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  637 (728)
                      ...+........... .........+....+.++...|++++|+..+..++.+...+.|.
T Consensus       284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs  343 (355)
T cd05804         284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS  343 (355)
T ss_pred             HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            999998877665521 01122234566778899999999999999999999998777663

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.67  E-value=9.6e-14  Score=148.80  Aligned_cols=424  Identities=14%  Similarity=0.082  Sum_probs=272.7

Q ss_pred             CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhh
Q 004829          215 GLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVE  294 (728)
Q Consensus       215 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  294 (728)
                      ..-++..+.++..+|..|...- +...|..+|++|..+         ++..+.+.-..+..|....+++.|....-.+-+
T Consensus       485 lrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeL---------Datdaeaaaa~adtyae~~~we~a~~I~l~~~q  554 (1238)
T KOG1127|consen  485 LRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFEL---------DATDAEAAAASADTYAEESTWEEAFEICLRAAQ  554 (1238)
T ss_pred             HhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC---------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence            3345555555555555555553 555555555555543         122233344455555555555555555333222


Q ss_pred             hhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829          295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC  374 (728)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  374 (728)
                      ..       ........|..+|..|...+++..|+..|+.++..        +|....+|..+|.+|...|+|..|++.|
T Consensus       555 ka-------~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlKvF  619 (1238)
T KOG1127|consen  555 KA-------PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALKVF  619 (1238)
T ss_pred             hc-------hHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHHhh
Confidence            11       11112234667888899999999999999999988        8999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHhCCHHHHH
Q 004829          375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA-NGHELDVASIDCSIGDAYLSLARFDEAI  453 (728)
Q Consensus       375 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~  453 (728)
                      .++..+.|...        ...+..+.+....|+|.+|+..+...+..... ..-....+.++..++..+...|-+.+|.
T Consensus       620 ~kAs~LrP~s~--------y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kav  691 (1238)
T KOG1127|consen  620 TKASLLRPLSK--------YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAV  691 (1238)
T ss_pred             hhhHhcCcHhH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence            99988766542        34667888899999999999999887654322 1223456778888888888899999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-----------------------cCCh------HHHHHHHHHHHHH
Q 004829          454 FSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-----------------------IGKL------RDSKSYCENALKI  504 (728)
Q Consensus       454 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----------------------~g~~------~~A~~~~~~al~~  504 (728)
                      .+++++++.+.-............+..++.+...                       ++..      --|.+++-..+.+
T Consensus       692 d~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl  771 (1238)
T KOG1127|consen  692 DFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL  771 (1238)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH
Confidence            9999998877654332211222222222222111                       1111      1122333333333


Q ss_pred             HcCCCCCCCcHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 004829          505 YGKPNHGIPSEEIASGLIDIAAIYQS--------MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS  576 (728)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  576 (728)
                      .          .....|+++|.-|+.        +.+...|+.++.+++++..+.       ...++.||.+ ...|++.
T Consensus       772 ~----------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann-------~~~WnaLGVl-sg~gnva  833 (1238)
T KOG1127|consen  772 A----------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANN-------EGLWNALGVL-SGIGNVA  833 (1238)
T ss_pred             h----------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHh-hccchhh
Confidence            1          124567888877765        233457999999999887665       3455666666 5557777


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829          577 DSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       577 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~  656 (728)
                      -|..+|-+++..        .+.....|.++|.++....+++.|...|.++..+        +|.....+...+.+....
T Consensus       834 ~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali~eav  897 (1238)
T KOG1127|consen  834 CAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALIPEAV  897 (1238)
T ss_pred             hhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHhHHHH
Confidence            777777777665        3334566777777777777777777777777766        666666666666666666


Q ss_pred             CChHHHHHHHHHHHHH-----------------------------------------HHHHcCCCChHHHHHHHHHHHHH
Q 004829          657 GRIDDAIEILEYVVGM-----------------------------------------REEKLGTANPDVEDEKRRLAELL  695 (728)
Q Consensus       657 g~~~~A~~~~~~al~~-----------------------------------------~~~~~~~~~p~~~~~~~~La~~~  695 (728)
                      |+.-++...|...-++                                         .-+.+=..||+...++...|.++
T Consensus       898 G~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstl  977 (1238)
T KOG1127|consen  898 GRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTL  977 (1238)
T ss_pred             HHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHH
Confidence            6555555444431111                                         11111136788888899999999


Q ss_pred             HHhCChhHHH
Q 004829          696 KEAGRVRNRK  705 (728)
Q Consensus       696 ~~~g~~~~A~  705 (728)
                      ..++.+++|.
T Consensus       978 EhL~ey~~a~  987 (1238)
T KOG1127|consen  978 EHLEEYRAAL  987 (1238)
T ss_pred             HHHHHHHHHH
Confidence            9999988887

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.67  E-value=2e-14  Score=145.57  Aligned_cols=222  Identities=15%  Similarity=0.084  Sum_probs=167.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829          238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD  317 (728)
Q Consensus       238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  317 (728)
                      ..+.++..+.+++...+     ......+..++.+|.+|...|++++|+..|++++++.     ++.+.    +++.+|.
T Consensus        41 ~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P~~~~----a~~~lg~  106 (296)
T PRK11189         41 QQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-----PDMAD----AYNYLGI  106 (296)
T ss_pred             HHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCHH----HHHHHHH
Confidence            46788888888875321     1224457889999999999999999999999999875     44443    5999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 004829          318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRR  397 (728)
Q Consensus       318 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~  397 (728)
                      ++...|++++|+..|++++++        +|....++.++|.++...|++++|+..|++++.+.|...     .    ..
T Consensus       107 ~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~----~~  169 (296)
T PRK11189        107 YLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----Y----RA  169 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H----HH
Confidence            999999999999999999999        788889999999999999999999999999998765432     1    11


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HHHhcCCCCHHH
Q 004829          398 LMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA---FKSAKGENHPAV  474 (728)
Q Consensus       398 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~  474 (728)
                      ....+....+++++|+..|.++....     ++.   .+ ..+.++...|++..+ ..+..+.+.   ..+.    .+..
T Consensus       170 ~~~~l~~~~~~~~~A~~~l~~~~~~~-----~~~---~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l----~~~~  235 (296)
T PRK11189        170 LWLYLAESKLDPKQAKENLKQRYEKL-----DKE---QW-GWNIVEFYLGKISEE-TLMERLKAGATDNTEL----AERL  235 (296)
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHhhC-----Ccc---cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHH----HHHH
Confidence            11223456789999999997765221     111   11 134555667776544 233333321   1111    4567


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          475 ASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      ..+|+++|.++...|++++|+.+|++++..
T Consensus       236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        236 CETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            789999999999999999999999999988

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=3e-15  Score=152.43  Aligned_cols=270  Identities=16%  Similarity=0.146  Sum_probs=206.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 004829          397 RLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVAS  476 (728)
Q Consensus       397 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  476 (728)
                      +..|..+++.|+..+|.-.|+.|+..      +|..+.+|..||.+....++-..|+..+++|+++        +|....
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkq------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nle  354 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQ------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLE  354 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhh------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHH
Confidence            46788999999999999999998854      7999999999999999999999999999999999        999999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC-CCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829          477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH-GIP-SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ  554 (728)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  554 (728)
                      ++..||..|...|.-.+|+.++.+-+..-..... ... ......    ...-......+..-.++|-.+....+..   
T Consensus       355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~~~---  427 (579)
T KOG1125|consen  355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLPTK---  427 (579)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCCCC---
Confidence            9999999999999999999999998775311100 000 000000    0000000011122223333333332211   


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE  634 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  634 (728)
                        .-+.+...||.+|...|+|++|+++|+.|+..        .|.....|+.||-.+....+.++|+..|++|+++    
T Consensus       428 --~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL----  493 (579)
T KOG1125|consen  428 --IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL----  493 (579)
T ss_pred             --CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc----
Confidence              22467788999999999999999999999987        5666789999999999999999999999999999    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH--HHHHHHHHHHHHHHhCChhHHH
Q 004829          635 YGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD--VEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       635 ~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~La~~~~~~g~~~~A~  705 (728)
                          .|..++++++||..|..+|.|++|..+|-.|+.+.+.-.+.....  .-.++..|-.++..+++.+-+.
T Consensus       494 ----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  494 ----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             ----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence                999999999999999999999999999999999987743321111  2345666667777777777443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1.3e-14  Score=141.61  Aligned_cols=296  Identities=13%  Similarity=0.051  Sum_probs=229.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH  348 (728)
Q Consensus       269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  348 (728)
                      ....|..++...+|.+|+..|..|+++.     ++...    .|...+.++...|+|++|.-..++.+.+        ++
T Consensus        52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-----pd~a~----yy~nRAa~~m~~~~~~~a~~dar~~~r~--------kd  114 (486)
T KOG0550|consen   52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-----PDNAS----YYSNRAATLMMLGRFEEALGDARQSVRL--------KD  114 (486)
T ss_pred             HHhhcchHHHHhhHHHHHHHHHHHHHhC-----ccchh----hhchhHHHHHHHHhHhhcccchhhheec--------CC
Confidence            3446778888899999999999999887     44433    4889999999999999999999998888        67


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 004829          349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH  428 (728)
Q Consensus       349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  428 (728)
                      .....+...+.++...++..+|...++..-                ++           ....|+..+++.   ......
T Consensus       115 ~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~----------------~~-----------~~anal~~~~~~---~~s~s~  164 (486)
T KOG0550|consen  115 GFSKGQLREGQCHLALSDLIEAEEKLKSKQ----------------AY-----------KAANALPTLEKL---APSHSR  164 (486)
T ss_pred             CccccccchhhhhhhhHHHHHHHHHhhhhh----------------hh-----------HHhhhhhhhhcc---cccccC
Confidence            777788888888888888888877766110                00           111222222222   222233


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      .|....+...-+.|+...|++++|...--..+.+        ++....++...|.+++..++.+.|+.+|++++.+....
T Consensus       165 ~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh  236 (486)
T KOG0550|consen  165 EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDH  236 (486)
T ss_pred             CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhh
Confidence            4555666677788999999999999888888887        88888899999999999999999999999999874321


Q ss_pred             CCC---CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          509 NHG---IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSA  585 (728)
Q Consensus       509 ~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  585 (728)
                      ...   ...+.....+..-|.-.++.|++..|.+.|..+|.+.+..   ....+.+|.+++.+...+|+..+|+..++.+
T Consensus       237 ~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n---~~~naklY~nra~v~~rLgrl~eaisdc~~A  313 (486)
T KOG0550|consen  237 QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN---KKTNAKLYGNRALVNIRLGRLREAISDCNEA  313 (486)
T ss_pred             hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc---cchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence            100   0123344556667888899999999999999999987764   3456788899999999999999999999999


Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          586 ISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       586 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      +.+        ++.+..++...|.++..+++|++|++.|++|++.
T Consensus       314 l~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  314 LKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             hhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            988        7778889999999999999999999999999887

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.66  E-value=1.2e-13  Score=146.31  Aligned_cols=306  Identities=11%  Similarity=0.022  Sum_probs=216.7

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC
Q 004829          222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG  301 (728)
Q Consensus       222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  301 (728)
                      +...+..|...+..| +|++|.+...++-..       .+.|  ...+...+.+....|+++.|..+|.++.+..     
T Consensus        84 ~~~~~~~gl~a~~eG-d~~~A~k~l~~~~~~-------~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-----  148 (398)
T PRK10747         84 ARKQTEQALLKLAEG-DYQQVEKLMTRNADH-------AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAELA-----  148 (398)
T ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHhc-------ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence            445567788888887 999998666665432       1122  2224445666699999999999999998753     


Q ss_pred             CchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829          302 QDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH  381 (728)
Q Consensus       302 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  381 (728)
                      ++..   .......+.++...|+++.|+..+++..+.        .|....++..++.+|...|++++|+..+.+..+..
T Consensus       149 ~~~~---~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~  217 (398)
T PRK10747        149 DNDQ---LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH  217 (398)
T ss_pred             Ccch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence            2221   122445589999999999999999999888        78888999999999999999999999998887653


Q ss_pred             HHcCCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          382 RENTSPASIE--EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKA  459 (728)
Q Consensus       382 ~~~~~~~~~~--~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  459 (728)
                      ....  ....  ...++..+........+-+.....++..-.      ..+....+...++..+...|+.++|...++++
T Consensus       218 ~~~~--~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~------~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~  289 (398)
T PRK10747        218 VGDE--EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR------KTRHQVALQVAMAEHLIECDDHDTAQQIILDG  289 (398)
T ss_pred             CCCH--HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH------HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            2211  1000  001122221111122222222222222111      12445677888999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          460 LTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVK  539 (728)
Q Consensus       460 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  539 (728)
                      ++.      ..++.....+   +.  ...+++++++..+++.++.         +|+.+..+..+|.++...+++++|..
T Consensus       290 l~~------~~~~~l~~l~---~~--l~~~~~~~al~~~e~~lk~---------~P~~~~l~l~lgrl~~~~~~~~~A~~  349 (398)
T PRK10747        290 LKR------QYDERLVLLI---PR--LKTNNPEQLEKVLRQQIKQ---------HGDTPLLWSTLGQLLMKHGEWQEASL  349 (398)
T ss_pred             Hhc------CCCHHHHHHH---hh--ccCCChHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            884      2233322222   22  2449999999999998877         45567788999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          540 LLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF  589 (728)
Q Consensus       540 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  589 (728)
                      +|+++++..++.        ..+..++.++..+|+.++|..+|++++.+.
T Consensus       350 ~le~al~~~P~~--------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        350 AFRAALKQRPDA--------YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            999999875443        345689999999999999999999998764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.65  E-value=4.5e-13  Score=141.86  Aligned_cols=300  Identities=12%  Similarity=0.035  Sum_probs=213.4

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE  391 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  391 (728)
                      .+.-|......|+|+.|.+...++-..        .+.....+...+.+....|+++.|..++.++.+..++..      
T Consensus        87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~--------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~------  152 (398)
T PRK10747         87 QTEQALLKLAEGDYQQVEKLMTRNADH--------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ------  152 (398)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhc--------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch------
Confidence            456677777789999999777765443        112223344556676999999999999999986554432      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                       .......+.++...|++++|+..+++....      .|....++..++.+|...|++++|+..+.+..+...     ..
T Consensus       153 -~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-----~~  220 (398)
T PRK10747        153 -LPVEITRVRIQLARNENHAARHGVDKLLEV------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-----GD  220 (398)
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-----CC
Confidence             012234488999999999999999988754      566778899999999999999999999888876511     12


Q ss_pred             HHHHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          472 PAVAS-----VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK  546 (728)
Q Consensus       472 ~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  546 (728)
                      +....     ++..+........+-+....+++..-..         .+....+...++..+...|+.++|...++++++
T Consensus       221 ~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~---------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~  291 (398)
T PRK10747        221 EEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK---------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK  291 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH---------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            22221     2222222222222222222222222111         234567788899999999999999999999987


Q ss_pred             HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          547 IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEE  626 (728)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  626 (728)
                      . +.    ++...     +.......++++++++.+++.++.        .+..+..+..+|.++...+++++|..+|++
T Consensus       292 ~-~~----~~~l~-----~l~~~l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~  353 (398)
T PRK10747        292 R-QY----DERLV-----LLIPRLKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLAFRA  353 (398)
T ss_pred             c-CC----CHHHH-----HHHhhccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3 11    11111     122223459999999999888765        344467899999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          627 ARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       627 al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      +++.        .|+.. .+..++.++.++|+.++|..+|++++.+.
T Consensus       354 al~~--------~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        354 ALKQ--------RPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHhc--------CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            9998        77754 45689999999999999999999998865

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.64  E-value=1.8e-13  Score=146.79  Aligned_cols=367  Identities=15%  Similarity=0.105  Sum_probs=281.6

Q ss_pred             cCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 004829          279 LGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVA  358 (728)
Q Consensus       279 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  358 (728)
                      ..+...|...|-+++.+.     +.    ...++..||.+|....+...|..+|.+|.++        ++..+.+....+
T Consensus       471 rK~~~~al~ali~alrld-----~~----~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~a  533 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLD-----VS----LAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASA  533 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcc-----cc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHH
Confidence            345677888888888775     22    2335899999999999999999999999999        889999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 004829          359 EAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCS  438 (728)
Q Consensus       359 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  438 (728)
                      ..|....+++.|...+-.+-+..+...      ....|...|..|...+++..|+..|+.+++.      +|....+|..
T Consensus       534 dtyae~~~we~a~~I~l~~~qka~a~~------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~------dPkD~n~W~g  601 (1238)
T KOG1127|consen  534 DTYAEESTWEEAFEICLRAAQKAPAFA------CKENWVQRGPYYLEAHNLHGAVCEFQSALRT------DPKDYNLWLG  601 (1238)
T ss_pred             HHhhccccHHHHHHHHHHHhhhchHHH------HHhhhhhccccccCccchhhHHHHHHHHhcC------CchhHHHHHH
Confidence            999999999999888555444333221      1233556899999999999999999999865      6888899999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH
Q 004829          439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA  518 (728)
Q Consensus       439 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  518 (728)
                      +|.+|...|++..|+..|.++..+        .|......+..+.+....|+|.+|+..+...+..+..-..  .....+
T Consensus       602 LGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~--~q~gLa  671 (1238)
T KOG1127|consen  602 LGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT--GQNGLA  671 (1238)
T ss_pred             HHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--hhhhHH
Confidence            999999999999999999999998        8988899999999999999999999999988876543211  123466


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC-------------------------------------------
Q 004829          519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ-------------------------------------------  555 (728)
Q Consensus       519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------------------  555 (728)
                      .++..++..+...|-+..|..+++++++.+.-.....                                           
T Consensus       672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~  751 (1238)
T KOG1127|consen  672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA  751 (1238)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence            7777777777777777777777776654332110000                                           


Q ss_pred             ----C----------------cHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004829          556 ----S----------------TIAGIEAQMGVMYYM--------TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM  607 (728)
Q Consensus       556 ----~----------------~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  607 (728)
                          .                ..+..++++|.-|+.        +.+-..|+.++.+++++        .......++.|
T Consensus       752 l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--------~ann~~~WnaL  823 (1238)
T KOG1127|consen  752 LKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--------CANNEGLWNAL  823 (1238)
T ss_pred             CcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--------hhccHHHHHHH
Confidence                0                011224566655554        12334677778887776        22234567777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 004829          608 GLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDE  687 (728)
Q Consensus       608 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~  687 (728)
                      |.+ ...|++.-|..+|-+++..        .|.....|.++|.++....+++-|...|.++..+        .|.+...
T Consensus       824 GVl-sg~gnva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~  886 (1238)
T KOG1127|consen  824 GVL-SGIGNVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQ  886 (1238)
T ss_pred             HHh-hccchhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHH
Confidence            776 5668888888888888877        7777889999999999999999999999998875        4888899


Q ss_pred             HHHHHHHHHHhCChhHHHHHHHH
Q 004829          688 KRRLAELLKEAGRVRNRKSRSLV  710 (728)
Q Consensus       688 ~~~La~~~~~~g~~~~A~~~~l~  710 (728)
                      +...+.+....|+.-++. ..+.
T Consensus       887 WlG~Ali~eavG~ii~~~-~lfa  908 (1238)
T KOG1127|consen  887 WLGEALIPEAVGRIIERL-ILFA  908 (1238)
T ss_pred             HHHHHHhHHHHHHHHHHH-HHHH
Confidence            999999999999888877 4433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=6.3e-14  Score=136.80  Aligned_cols=291  Identities=18%  Similarity=0.160  Sum_probs=229.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829          220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE  299 (728)
Q Consensus       220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  299 (728)
                      ..+.-....+..++... +|..|+..|..|+..+         |+.+..|.+.+.+++..|+|++|.-..++.+++.   
T Consensus        47 ~~Ae~~k~~gn~~yk~k-~Y~nal~~yt~Ai~~~---------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k---  113 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQK-TYGNALKNYTFAIDMC---------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK---  113 (486)
T ss_pred             HHHHHHHhhcchHHHHh-hHHHHHHHHHHHHHhC---------ccchhhhchhHHHHHHHHhHhhcccchhhheecC---
Confidence            34556777888888884 9999999999999985         4457789999999999999999999999999875   


Q ss_pred             cCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--------HHHHHHcC--CCChHHHHHHHHHHHHHHHhCCHHH
Q 004829          300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGL--------EIQRQVLG--ETDHRVGETCRYVAEAHVQSLQFDE  369 (728)
Q Consensus       300 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~  369 (728)
                        +..+    ..+...+.++..+++..+|...++..-        .....+..  ...|....+...-+.|+...|++++
T Consensus       114 --d~~~----k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~  187 (486)
T KOG0550|consen  114 --DGFS----KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE  187 (486)
T ss_pred             --CCcc----ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence              2222    236677788888887777776655211        11111111  1125566677778899999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC------CChhHHHHHHHHHHHH
Q 004829          370 AEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG------HELDVASIDCSIGDAY  443 (728)
Q Consensus       370 A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~la~~~  443 (728)
                      |...--..+++...+        +.+++.-|.+++..++.+.|+.+|++++.+-....      ..+.....+..-|.-.
T Consensus       188 a~~ea~~ilkld~~n--------~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~  259 (486)
T KOG0550|consen  188 AQSEAIDILKLDATN--------AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA  259 (486)
T ss_pred             HHHHHHHHHhcccch--------hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence            998877777665443        34578889999999999999999999986632211      1244566778889999


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHH
Q 004829          444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLID  523 (728)
Q Consensus       444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  523 (728)
                      ++.|++..|.+.|..+|.+-..    +....+..|.++|.+...+|+..+|+..++.++.+         ++....++..
T Consensus       260 fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---------D~syikall~  326 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---------DSSYIKALLR  326 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---------CHHHHHHHHH
Confidence            9999999999999999998332    24456788999999999999999999999999999         6778999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          524 IAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       524 la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .|.++..+++|++|++.|+++++....
T Consensus       327 ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  327 RANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999987655

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.61  E-value=3.4e-14  Score=144.86  Aligned_cols=270  Identities=16%  Similarity=0.091  Sum_probs=201.6

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChH
Q 004829          270 HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHR  349 (728)
Q Consensus       270 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  349 (728)
                      +..|..+++.|+..+|.-.|+.++.-.     |.|    +.+|..||.+....++-..|+..+++++++        +|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqd-----P~h----aeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~  351 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQD-----PQH----AEAWQKLGITQAENENEQNAISALRRCLEL--------DPT  351 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhC-----hHH----HHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCc
Confidence            357999999999999999999999754     444    446999999999999999999999999999        999


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 004829          350 VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE  429 (728)
Q Consensus       350 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  429 (728)
                      ...++..||..|...|.-.+|..++.+-+...+.......... ........-......+..-.++|..+   ....+. 
T Consensus       352 NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLea---a~~~~~-  426 (579)
T KOG1125|consen  352 NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEA---ARQLPT-  426 (579)
T ss_pred             cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc-cccccCCcCCCCHHHHHHHHHHHHHH---HHhCCC-
Confidence            9999999999999999999999999998765533210000000 00000000000000111222333222   222221 


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829          430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN  509 (728)
Q Consensus       430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  509 (728)
                      ...+.+...||.+|...|+|++|+.+|+.||..        .|.....|+.||-.+..-.+..+|+..|.+|+++     
T Consensus       427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-----  493 (579)
T KOG1125|consen  427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL-----  493 (579)
T ss_pred             CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-----
Confidence            234678899999999999999999999999998        9999999999999999999999999999999999     


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHHHcCCHHHH
Q 004829          510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS---TIAGIEAQMGVMYYMTGNYSDS  578 (728)
Q Consensus       510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A  578 (728)
                          .|..++++++||..|..+|.|.+|.++|-.||.+.+.......   .--.++..|-.++...++.+-+
T Consensus       494 ----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  494 ----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             ----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence                5668899999999999999999999999999999887433221   1123444444555555555533

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=1.4e-12  Score=124.58  Aligned_cols=389  Identities=12%  Similarity=0.096  Sum_probs=263.9

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh--
Q 004829          221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL--  298 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--  298 (728)
                      ....-+.+|.+++..| +|++|+..|.-+...      .++.   +....+||.|++-+|.|.+|.....++-+....  
T Consensus        56 E~~~~lWia~C~fhLg-dY~~Al~~Y~~~~~~------~~~~---~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~R  125 (557)
T KOG3785|consen   56 EDSLQLWIAHCYFHLG-DYEEALNVYTFLMNK------DDAP---AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIR  125 (557)
T ss_pred             hHHHHHHHHHHHHhhc-cHHHHHHHHHHHhcc------CCCC---cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHH
Confidence            3566778899999997 999999999887652      2222   445778999999999999999988876542100  


Q ss_pred             -------hcCCchh--------HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829          299 -------EDGQDHA--------LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ  363 (728)
Q Consensus       299 -------~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  363 (728)
                             ..+.+..        .....-.+.||.+.+..-.|++|++.|.+++.-        .|+....-..+|.||++
T Consensus       126 LlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--------n~ey~alNVy~ALCyyK  197 (557)
T KOG3785|consen  126 LLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--------NPEYIALNVYMALCYYK  197 (557)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--------ChhhhhhHHHHHHHHHh
Confidence                   0001100        001123567788888888999999999998876        78888888999999999


Q ss_pred             hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHc--CCHHHHH----------------HHHHHHHHHHHh
Q 004829          364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSK--GDYEAAL----------------EHYVLASMSMAA  425 (728)
Q Consensus       364 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~--g~~~~A~----------------~~~~~al~~~~~  425 (728)
                      +.-|+-+.+.+.-.+...++..        .+.+..+...++.  |+..++.                ..++.-+-.++.
T Consensus       198 lDYydvsqevl~vYL~q~pdSt--------iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn  269 (557)
T KOG3785|consen  198 LDYYDVSQEVLKVYLRQFPDST--------IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN  269 (557)
T ss_pred             cchhhhHHHHHHHHHHhCCCcH--------HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence            9999999888887776655432        2344444444432  2222221                111100000000


Q ss_pred             cC--------CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHH
Q 004829          426 NG--------HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY  497 (728)
Q Consensus       426 ~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  497 (728)
                      ..        --..++.+..++...|..+++..+|+.+++..           .|..+.-+...|.++...|+--...++
T Consensus       270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-----------~PttP~EyilKgvv~aalGQe~gSreH  338 (557)
T KOG3785|consen  270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-----------DPTTPYEYILKGVVFAALGQETGSREH  338 (557)
T ss_pred             CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----------CCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence            00        01123567788888999999999988776543           777788888999999999998878777


Q ss_pred             HHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHH
Q 004829          498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSD  577 (728)
Q Consensus       498 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  577 (728)
                      ++.|-+.++-.+.....-+.......+|.+++...++++.+.++......+...       -...++++.++...|++.+
T Consensus       339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd-------D~Fn~N~AQAk~atgny~e  411 (557)
T KOG3785|consen  339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND-------DDFNLNLAQAKLATGNYVE  411 (557)
T ss_pred             HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------chhhhHHHHHHHHhcChHH
Confidence            777776665544332333344456677888888889999999888766665443       1245689999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004829          578 SYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG  657 (728)
Q Consensus       578 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g  657 (728)
                      |.+.|-+.-..       .-.........||+||...+.++.|..++-+.-         ...+....+..+|..++..+
T Consensus       412 aEelf~~is~~-------~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---------t~~e~fsLLqlIAn~CYk~~  475 (557)
T KOG3785|consen  412 AEELFIRISGP-------EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---------TPSERFSLLQLIANDCYKAN  475 (557)
T ss_pred             HHHHHhhhcCh-------hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---------CchhHHHHHHHHHHHHHHHH
Confidence            99888665321       111223456778999999999999988876521         13344456667788888888


Q ss_pred             ChHHHHHHHHHH
Q 004829          658 RIDDAIEILEYV  669 (728)
Q Consensus       658 ~~~~A~~~~~~a  669 (728)
                      .+=-|.+.|...
T Consensus       476 eFyyaaKAFd~l  487 (557)
T KOG3785|consen  476 EFYYAAKAFDEL  487 (557)
T ss_pred             HHHHHHHhhhHH
Confidence            876666666543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=6.5e-12  Score=120.14  Aligned_cols=287  Identities=16%  Similarity=0.119  Sum_probs=184.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHH
Q 004829          237 ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLG  316 (728)
Q Consensus       237 ~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la  316 (728)
                      .+|..|+.+.+-.+..-+        .+....-..+|.|++.+|+|++|+..|.-+....       .+  ....+.+||
T Consensus        36 rDytGAislLefk~~~~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------~~--~~el~vnLA   98 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------DA--PAELGVNLA   98 (557)
T ss_pred             ccchhHHHHHHHhhccch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------CC--CcccchhHH
Confidence            489999998887765321        1122334568999999999999999998877521       11  123488999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 004829          317 DTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADR  396 (728)
Q Consensus       317 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~  396 (728)
                      .+++.+|.|.+|...-.++-+         .|...+.++.++.   +.++-.+-...-+..-+..            .-.
T Consensus        99 cc~FyLg~Y~eA~~~~~ka~k---------~pL~~RLlfhlah---klndEk~~~~fh~~LqD~~------------Edq  154 (557)
T KOG3785|consen   99 CCKFYLGQYIEAKSIAEKAPK---------TPLCIRLLFHLAH---KLNDEKRILTFHSSLQDTL------------EDQ  154 (557)
T ss_pred             HHHHHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHH---HhCcHHHHHHHHHHHhhhH------------HHH
Confidence            999999999999887776532         4555566666654   4454433333222221111            124


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 004829          397 RLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVAS  476 (728)
Q Consensus       397 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  476 (728)
                      ..|+.+.+..-.|.+|++.|.+.+      .+.+.....-..+|.||+++.-|+-+.+.+.--+..        .|+...
T Consensus       155 LSLAsvhYmR~HYQeAIdvYkrvL------~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--------~pdSti  220 (557)
T KOG3785|consen  155 LSLASVHYMRMHYQEAIDVYKRVL------QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--------FPDSTI  220 (557)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHH------hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--------CCCcHH
Confidence            467777778888999999998876      346677777788999999999998887776665554        666666


Q ss_pred             HHHHHHHHHHHc--CChH----------------HHHHHHHH----------HHHHHcCCCCCCCcHHHHHHHHHHHHHH
Q 004829          477 VFVRLADLYHKI--GKLR----------------DSKSYCEN----------ALKIYGKPNHGIPSEEIASGLIDIAAIY  528 (728)
Q Consensus       477 ~~~~la~~~~~~--g~~~----------------~A~~~~~~----------al~~~~~~~~~~~~~~~~~~~~~la~~~  528 (728)
                      +...++..++++  |+..                .+...++.          |++....     -....+.+..+|...|
T Consensus       221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~-----L~~~IPEARlNL~iYy  295 (557)
T KOG3785|consen  221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS-----LMKHIPEARLNLIIYY  295 (557)
T ss_pred             HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH-----HHhhChHhhhhheeee
Confidence            666665555543  2221                12222211          1111111     0122456788899999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829          529 QSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG  593 (728)
Q Consensus       529 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  593 (728)
                      ..+++.++|..+...          ..+..+.-|...|.++...|+--...+.++-|-+.+.-.+
T Consensus       296 L~q~dVqeA~~L~Kd----------l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG  350 (557)
T KOG3785|consen  296 LNQNDVQEAISLCKD----------LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG  350 (557)
T ss_pred             cccccHHHHHHHHhh----------cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence            999999998877652          2233334455678888888877766666666665555443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=7.2e-11  Score=117.36  Aligned_cols=429  Identities=15%  Similarity=0.119  Sum_probs=296.8

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829          223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ  302 (728)
Q Consensus       223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  302 (728)
                      ..+...|.--..++ ++..|...|++||..       +  ......+...+.+-++......|..++.+|+.+.+     
T Consensus        74 ~~WikYaqwEesq~-e~~RARSv~ERALdv-------d--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP-----  138 (677)
T KOG1915|consen   74 QVWIKYAQWEESQK-EIQRARSVFERALDV-------D--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP-----  138 (677)
T ss_pred             HHHHHHHHHHHhHH-HHHHHHHHHHHHHhc-------c--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc-----
Confidence            33444444444443 566666666666542       2  22344577789999999999999999999998752     


Q ss_pred             chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR  382 (728)
Q Consensus       303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  382 (728)
                      ..    -..|+....+-..+|+..-|.+.|++=+..        .|.. .+|......-......+.|...|++.+-..|
T Consensus       139 RV----dqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP  205 (677)
T KOG1915|consen  139 RV----DQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHP  205 (677)
T ss_pred             hH----HHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecc
Confidence            11    123666666667789999999999988877        4433 4565556666667778888888888775544


Q ss_pred             HcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829          383 ENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA  462 (728)
Q Consensus       383 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  462 (728)
                      +         +..+...+..-...|+...|...|++|+..+.   ++......+...|..-..+..++.|...|+-||+.
T Consensus       206 ~---------v~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~  273 (677)
T KOG1915|consen  206 K---------VSNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH  273 (677)
T ss_pred             c---------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3         23567777788888888888888888876653   34444455555566666666777777766666543


Q ss_pred             HH---------------HhcC---------------------CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829          463 FK---------------SAKG---------------------ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       463 ~~---------------~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (728)
                      ..               +.+|                     .++|..-.+++..-.+-...|+.+.-.+.|++|+.-..
T Consensus       274 ~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvp  353 (677)
T KOG1915|consen  274 IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVP  353 (677)
T ss_pred             cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Confidence            22               1122                     12455556777777777888999999999999987642


Q ss_pred             CCCCCCCcHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          507 KPNHGIPSEEIASGLIDIAAI-YQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSA  585 (728)
Q Consensus       507 ~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  585 (728)
                      ..............|.+.+.. -....+.+.+.+.|+.++++.+..   ..+.+.++...|....++.+...|.+.+-.|
T Consensus       354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk---kFtFaKiWlmyA~feIRq~~l~~ARkiLG~A  430 (677)
T KOG1915|consen  354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK---KFTFAKIWLMYAQFEIRQLNLTGARKILGNA  430 (677)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc---cchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            211000011122233333321 235678999999999999987643   4567888888899999999999999999999


Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 004829          586 ISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEI  665 (728)
Q Consensus       586 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~  665 (728)
                      +-.+.+         ..++-..-.+-.++++++....+|++-++.        .|....++...|.+-..+|+.+.|...
T Consensus       431 IG~cPK---------~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaRai  493 (677)
T KOG1915|consen  431 IGKCPK---------DKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRARAI  493 (677)
T ss_pred             hccCCc---------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence            876321         234445556677889999999999999998        999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          666 LEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       666 ~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                      |+-|+.--    .-+-|..  .+......-...|.++.|. ..++.+++..++
T Consensus       494 felAi~qp----~ldmpel--lwkaYIdFEi~~~E~ekaR-~LYerlL~rt~h  539 (677)
T KOG1915|consen  494 FELAISQP----ALDMPEL--LWKAYIDFEIEEGEFEKAR-ALYERLLDRTQH  539 (677)
T ss_pred             HHHHhcCc----ccccHHH--HHHHhhhhhhhcchHHHHH-HHHHHHHHhccc
Confidence            99888621    1122322  2334455666789999999 999999987765

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=4.5e-11  Score=122.28  Aligned_cols=400  Identities=13%  Similarity=0.059  Sum_probs=259.4

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh-------
Q 004829          226 LKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL-------  298 (728)
Q Consensus       226 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------  298 (728)
                      ++.|.+.++.+ ..++|+..++-. .           +....++...|.+++++|+|++|+..|+..++-...       
T Consensus        83 fEKAYc~Yrln-k~Dealk~~~~~-~-----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r  149 (652)
T KOG2376|consen   83 FEKAYCEYRLN-KLDEALKTLKGL-D-----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR  149 (652)
T ss_pred             HHHHHHHHHcc-cHHHHHHHHhcc-c-----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence            78899999996 899999888721 1           112345777899999999999999999987543210       


Q ss_pred             ---------------hcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh-------HHHHHHHH
Q 004829          299 ---------------EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH-------RVGETCRY  356 (728)
Q Consensus       299 ---------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~  356 (728)
                                     ...+..+......+++.|.++...|+|.+|++.+++++.++++.+.+.+.       ++..+...
T Consensus       150 ~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ  229 (652)
T KOG2376|consen  150 ANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ  229 (652)
T ss_pred             HHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence                           01122223345678999999999999999999999999998886654332       34557788


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH----HHhcCCChh
Q 004829          357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYE-AALEHYVLASMS----MAANGHELD  431 (728)
Q Consensus       357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~-~A~~~~~~al~~----~~~~~~~~~  431 (728)
                      ++.++..+|+-.+|...|...+...+.    +....+.+-++|-.+-....-++ .++..++.....    ....-....
T Consensus       230 layVlQ~~Gqt~ea~~iy~~~i~~~~~----D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q  305 (652)
T KOG2376|consen  230 LAYVLQLQGQTAEASSIYVDIIKRNPA----DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ  305 (652)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhcCC----CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            999999999999999999988865443    23334444555543332222222 111111111000    000000122


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG  511 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  511 (728)
                      ...++.+.+.+.+..+.-+.+.+.....-        ...|..................+.+|..++...-+-.      
T Consensus       306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp--------~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~------  371 (652)
T KOG2376|consen  306 KQAIYRNNALLALFTNKMDQVRELSASLP--------GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH------  371 (652)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhCC--------ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC------
Confidence            33456666666666666655554433221        2244333333333333333336777777777654441      


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT  591 (728)
Q Consensus       512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  591 (728)
                        +.....+...++.+...+|+++.|+..+...+.........-.....+-..+-.+|+..++-+-|...+.+|+..++.
T Consensus       372 --p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~  449 (652)
T KOG2376|consen  372 --PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK  449 (652)
T ss_pred             --CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence              223466788899999999999999999986554333222221122223344566778888888899999999998887


Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829          592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEY  668 (728)
Q Consensus       592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~  668 (728)
                      ..... ...-..+..++..-.+.|+-++|...+++.++.        +|....++..+..+|... +.+.|..+-++
T Consensus       450 ~~t~s-~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~eka~~l~k~  516 (652)
T KOG2376|consen  450 QQTGS-IALLSLMREAAEFKLRHGNEEEASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEKAESLSKK  516 (652)
T ss_pred             hcccc-hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence            65443 334456667778888889999999999999998        788888888888887765 56677665443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.54  E-value=2.7e-11  Score=129.30  Aligned_cols=320  Identities=14%  Similarity=0.122  Sum_probs=212.7

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Q 004829          267 MCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGET  346 (728)
Q Consensus       267 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  346 (728)
                      .++.....++...|++++|+++++......         ......+-..|.++..+|++++|...|...++.        
T Consensus         5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--------   67 (517)
T PF12569_consen    5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--------   67 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence            345567888999999999999998755432         123445889999999999999999999999998        


Q ss_pred             ChHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHH
Q 004829          347 DHRVGETCRYVAEAHVQSL-----QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV-LAS  420 (728)
Q Consensus       347 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~-~al  420 (728)
                      .|+....+..+..+.....     +.+.-..+|++....+|....+         ..+...+..-..|......|- ..+
T Consensus        68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~---------~rl~L~~~~g~~F~~~~~~yl~~~l  138 (517)
T PF12569_consen   68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP---------RRLPLDFLEGDEFKERLDEYLRPQL  138 (517)
T ss_pred             CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch---------hHhhcccCCHHHHHHHHHHHHHHHH
Confidence            7888888888887774333     4555666677665555443221         122222222223443333332 221


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh--cC------CCCH-HHHHHHHHHHHHHHHcCCh
Q 004829          421 MSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA--KG------ENHP-AVASVFVRLADLYHKIGKL  491 (728)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~------~~~~-~~~~~~~~la~~~~~~g~~  491 (728)
                              ...++.++.++-.+|....+..-....+...+......  +.      ...| ...++++.+|..|...|++
T Consensus       139 --------~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~  210 (517)
T PF12569_consen  139 --------RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY  210 (517)
T ss_pred             --------hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH
Confidence                    12333455555555553333222222222222211110  00      1122 3467889999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Q 004829          492 RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYM  571 (728)
Q Consensus       492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~  571 (728)
                      ++|+.++++++..         .|..+..|...|.++...|++.+|...++.|..+....       -.+-...+..+++
T Consensus       211 ~~Al~~Id~aI~h---------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-------RyiNsK~aKy~LR  274 (517)
T PF12569_consen  211 EKALEYIDKAIEH---------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-------RYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHhc---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh-------HHHHHHHHHHHHH
Confidence            9999999999998         56678899999999999999999999999998775433       2344567888899


Q ss_pred             cCCHHHHHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829          572 TGNYSDSYNTLKSAISKFR-TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG  636 (728)
Q Consensus       572 ~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  636 (728)
                      .|+.++|...+.....--. ...+-......+.....|.+|.+.|++..|+..|..+.+++.....
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~  340 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE  340 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999877654422100 0000011123455667799999999999999999999999887754

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.50  E-value=4.3e-10  Score=120.12  Aligned_cols=323  Identities=15%  Similarity=0.137  Sum_probs=208.0

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhc
Q 004829          221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLED  300 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  300 (728)
                      ....++-.+.++...| ++++|+++++......         .+...++...|.++..+|++++|...|...+...    
T Consensus         3 ~SE~lLY~~~il~e~g-~~~~AL~~L~~~~~~I---------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN----   68 (517)
T PF12569_consen    3 HSELLLYKNSILEEAG-DYEEALEHLEKNEKQI---------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN----   68 (517)
T ss_pred             HHHHHHHHHHHHHHCC-CHHHHHHHHHhhhhhC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence            4567888888999997 9999999997765432         4556778889999999999999999999999875    


Q ss_pred             CCchhHhHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHH-HHHH
Q 004829          301 GQDHALAKFAGCMQLGDTYAMLG-----QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEA-EKIC  374 (728)
Q Consensus       301 ~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~  374 (728)
                       +++...    +..+..+.....     +.+.-..+|++....+        |... +...+...+..-..|... ..++
T Consensus        69 -Pdn~~Y----y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--------p~s~-~~~rl~L~~~~g~~F~~~~~~yl  134 (517)
T PF12569_consen   69 -PDNYDY----YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--------PRSD-APRRLPLDFLEGDEFKERLDEYL  134 (517)
T ss_pred             -CCcHHH----HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--------cccc-chhHhhcccCCHHHHHHHHHHHH
Confidence             444332    555555553332     3455566666554442        2211 111111111111123222 2222


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-----------CCChhHHHHHHHHHHHH
Q 004829          375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN-----------GHELDVASIDCSIGDAY  443 (728)
Q Consensus       375 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~la~~~  443 (728)
                      ...+    ..+-|      .++..+-.+|....+..-....+..........           ..+....++++.+|..|
T Consensus       135 ~~~l----~KgvP------slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy  204 (517)
T PF12569_consen  135 RPQL----RKGVP------SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY  204 (517)
T ss_pred             HHHH----hcCCc------hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence            2222    22222      124444444443332222222222222211111           11223467889999999


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHH
Q 004829          444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLID  523 (728)
Q Consensus       444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  523 (728)
                      ...|++++|++++++|++.        .|..+..|...|.+|-..|++.+|...++.|..+.         ...-.+-..
T Consensus       205 d~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD---------~~DRyiNsK  267 (517)
T PF12569_consen  205 DYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD---------LADRYINSK  267 (517)
T ss_pred             HHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC---------hhhHHHHHH
Confidence            9999999999999999998        89999999999999999999999999999998883         223344556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH
Q 004829          524 IAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS--TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA  598 (728)
Q Consensus       524 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  598 (728)
                      .+..+.+.|+.++|...+..-..-.......-.  ...+.....|.+|.+.|++..|++.|....+.+....+..-.
T Consensus       268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfD  344 (517)
T PF12569_consen  268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFD  344 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            778889999999998876643221110000001  123344567999999999999999999999999888665433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=1.8e-09  Score=107.65  Aligned_cols=389  Identities=11%  Similarity=0.039  Sum_probs=294.3

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCC
Q 004829          268 CLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETD  347 (728)
Q Consensus       268 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  347 (728)
                      .+...|.--..++++..|...|++||...    ..     .+..|+..+.+-+...+...|..++.+|+.+        -
T Consensus        75 ~WikYaqwEesq~e~~RARSv~ERALdvd----~r-----~itLWlkYae~Emknk~vNhARNv~dRAvt~--------l  137 (677)
T KOG1915|consen   75 VWIKYAQWEESQKEIQRARSVFERALDVD----YR-----NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--------L  137 (677)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhcc----cc-----cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--------c
Confidence            35667888888999999999999999753    11     2335889999999999999999999999999        5


Q ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 004829          348 HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG  427 (728)
Q Consensus       348 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  427 (728)
                      |.+-..|+....+-..+|+..-|.+.|++-+...|..         .+|......-.+....+.|...|++-+..     
T Consensus       138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e---------qaW~sfI~fElRykeieraR~IYerfV~~-----  203 (677)
T KOG1915|consen  138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE---------QAWLSFIKFELRYKEIERARSIYERFVLV-----  203 (677)
T ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhee-----
Confidence            7788888888888889999999999999998765543         25777777777888899999999887543     


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                       +|. ...|...+..-...|+..-|...|.+|++.+..     .......+...|..-..+..++.|.-.|+-|++...+
T Consensus       204 -HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk  276 (677)
T KOG1915|consen  204 -HPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK  276 (677)
T ss_pred             -ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence             344 457778888999999999999999999987543     3444556666777777778888888888877775433


Q ss_pred             CC--------------CC---------------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829          508 PN--------------HG---------------------IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP  552 (728)
Q Consensus       508 ~~--------------~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  552 (728)
                      ..              .|                     ...|....+|+..-.+....|+.+.-.+.|++|+.-.+...
T Consensus       277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~  356 (677)
T KOG1915|consen  277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS  356 (677)
T ss_pred             ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh
Confidence            20              00                     01223345566667777778999999999999987655432


Q ss_pred             CCCCcHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          553 GQQSTIAGIEAQMGVMY---YMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART  629 (728)
Q Consensus       553 ~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  629 (728)
                      ......-.+|..+-.++   ....+.+.+.+.|+.++++.    +......+.++...|.....+.+...|...+-.|+-
T Consensus       357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG  432 (677)
T KOG1915|consen  357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG  432 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence            22222233333333333   45789999999999999863    333455788888889999999999999999999887


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004829          630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSL  709 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l  709 (728)
                      .        -|.. ........+-.++++++....+|++.++        -.|....++...|.+-..+|+.+.|. ..+
T Consensus       433 ~--------cPK~-KlFk~YIelElqL~efDRcRkLYEkfle--------~~Pe~c~~W~kyaElE~~LgdtdRaR-aif  494 (677)
T KOG1915|consen  433 K--------CPKD-KLFKGYIELELQLREFDRCRKLYEKFLE--------FSPENCYAWSKYAELETSLGDTDRAR-AIF  494 (677)
T ss_pred             c--------CCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHh--------cChHhhHHHHHHHHHHHHhhhHHHHH-HHH
Confidence            7        3332 2334445566778899999999999888        56999999999999999999999999 888


Q ss_pred             HHHHhhc
Q 004829          710 VTFLDSN  716 (728)
Q Consensus       710 ~~ll~~~  716 (728)
                      +.++...
T Consensus       495 elAi~qp  501 (677)
T KOG1915|consen  495 ELAISQP  501 (677)
T ss_pred             HHHhcCc
Confidence            8776544

>PLN02789 farnesyltranstransferase

Probab=99.46  E-value=2.3e-11  Score=122.72  Aligned_cols=216  Identities=11%  Similarity=0.048  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHcCCCCCCC
Q 004829          435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG-KLRDSKSYCENALKIYGKPNHGIP  513 (728)
Q Consensus       435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~  513 (728)
                      ++..+-.++...+++++|+..+.+++.+        +|....++...+.++..+| ++++++.++++++..         
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---------  101 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---------  101 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---------
Confidence            3333334556678999999999999999        9999999999999999998 689999999999988         


Q ss_pred             cHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          514 SEEIASGLIDIAAIYQSMNEL--EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT  591 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  591 (728)
                      .+....+|...+.++...|+.  ++++.++.+++++.++.       ..++...+.++...|++++|++++.++++.   
T Consensus       102 npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---  171 (320)
T PLN02789        102 NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLEE---  171 (320)
T ss_pred             CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---
Confidence            344566788899888888874  67889999999887665       578889999999999999999999999987   


Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChH
Q 004829          592 SGEKKSALFGIALNQMGLACVQR---YTI----NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA----MGRID  660 (728)
Q Consensus       592 ~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~  660 (728)
                           ++....+++..+.++...   |.+    ++++.+..+++.+        .|+...++..++.++..    +++..
T Consensus       172 -----d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~  238 (320)
T PLN02789        172 -----DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDP  238 (320)
T ss_pred             -----CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccch
Confidence                 344467888888887765   323    5788888899998        88888899999999988    45567


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829          661 DAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA  698 (728)
Q Consensus       661 ~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  698 (728)
                      +|...+.+++.        ..|....++..|+.+|...
T Consensus       239 ~~~~~~~~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        239 EVSSVCLEVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             hHHHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence            78888887766        3477778888899999864

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=1.2e-08  Score=102.31  Aligned_cols=427  Identities=14%  Similarity=0.054  Sum_probs=280.9

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChhHHHHHHHHhhhhhhhh
Q 004829          221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLG-QYNEAIPVLERSVEIPVLE  299 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  299 (728)
                      .+...+.+|..++.--++++.|....++|..+.+.++.-.  .....+...++.+|.... .+..|...+.+++++.   
T Consensus        45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiels---  119 (629)
T KOG2300|consen   45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELS---  119 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh---
Confidence            3556778888777665799999999999999877663221  223556778999999888 7899999999999986   


Q ss_pred             cCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH------------------------------------HHc
Q 004829          300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQR------------------------------------QVL  343 (728)
Q Consensus       300 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------------------------~~~  343 (728)
                        ...|...-..++.|+.++....++..|++.+.-......                                    .+.
T Consensus       120 --q~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~  197 (629)
T KOG2300|consen  120 --QSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIW  197 (629)
T ss_pred             --cCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence              444444455689999999999999998877542211110                                    000


Q ss_pred             CC--CChHHHHHH----HHHH-HHHHHhCCHHHHHHHHHHHHHHHHHcCCC-----------CcHH--------HHHHHH
Q 004829          344 GE--TDHRVGETC----RYVA-EAHVQSLQFDEAEKICQMALDIHRENTSP-----------ASIE--------EAADRR  397 (728)
Q Consensus       344 ~~--~~~~~~~~~----~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~--------~a~~~~  397 (728)
                      ..  .+|..-+.+    ..+- ..|...|+...+...+++.-+-......+           +.+.        ...++.
T Consensus       198 ~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV  277 (629)
T KOG2300|consen  198 QNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALV  277 (629)
T ss_pred             hccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhh
Confidence            00  011111111    1111 12334455555555444333222111110           1110        011111


Q ss_pred             HH--HHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhH--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829          398 LM--GLICDSKGDYEAALEHYVLASMSMAANGHELDV--------ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK  467 (728)
Q Consensus       398 ~l--g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  467 (728)
                      .+  -.--...|-+++|.++-++++....+....+..        ...+-.+..|-.-.|++.+|++....+.+.+.+.-
T Consensus       278 ~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p  357 (629)
T KOG2300|consen  278 YLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFP  357 (629)
T ss_pred             hhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            11  112234677899999999888776655544422        23456677788889999999999999988877652


Q ss_pred             CC--CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          468 GE--NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKAL  545 (728)
Q Consensus       468 ~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  545 (728)
                      ++  -....+.....+|......+.++.|...|..|.+....      ..-.+.+-.++|..|...|+-+.-.    +++
T Consensus       358 ~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------~dl~a~~nlnlAi~YL~~~~~ed~y----~~l  427 (629)
T KOG2300|consen  358 TPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------IDLQAFCNLNLAISYLRIGDAEDLY----KAL  427 (629)
T ss_pred             chHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------HHHHHHHHHhHHHHHHHhccHHHHH----HHH
Confidence            21  02234556677788888889999999999999998644      2346667788999999988754433    233


Q ss_pred             HHHh-cCCCC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829          546 KIYG-KTPGQ---QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAA  621 (728)
Q Consensus       546 ~~~~-~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  621 (728)
                      +... .....   ....+.+++..|...+.++++.+|...+.+.+++....  ......+..+..||.+..-.|+..++.
T Consensus       428 d~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~  505 (629)
T KOG2300|consen  428 DLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESR  505 (629)
T ss_pred             HhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            3322 21011   11345677788889999999999999999999986332  223445677888999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 004829          622 DLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGR--IDDAIEILEY  668 (728)
Q Consensus       622 ~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~--~~~A~~~~~~  668 (728)
                      ....-++++..++.  +.+-.......+-.+|...|+  .+.+.+.|..
T Consensus       506 nmvrpamqlAkKi~--Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~  552 (629)
T KOG2300|consen  506 NMVRPAMQLAKKIP--DIPVQLWSSSILTDLYQALGEKGNEMENEAFRK  552 (629)
T ss_pred             hccchHHHHHhcCC--CchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            99999999988863  366667777777888888888  6666666655

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.45  E-value=8.4e-12  Score=122.92  Aligned_cols=184  Identities=18%  Similarity=0.149  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829          515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE  594 (728)
Q Consensus       515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  594 (728)
                      +..+..++.+|..+...|++++|+..|++++...+..    +....+++.+|.++...|++++|+..|+++++....   
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---  102 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN---  102 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---
Confidence            4467789999999999999999999999998876543    233457789999999999999999999999987432   


Q ss_pred             CCcHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--------------HHHHHHH
Q 004829          595 KKSALFGIALNQMGLACVQR--------YTINEAADLFEEARTILEKEYGPYHHDTLGV--------------YSNLAGT  652 (728)
Q Consensus       595 ~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~La~~  652 (728)
                        .+....+++.+|.++...        |++++|+..|++++..     .+.++....+              ...+|.+
T Consensus       103 --~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~  175 (235)
T TIGR03302       103 --HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKKRMDYLRNRLAGKELYVARF  175 (235)
T ss_pred             --CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              233345788899999876        7899999999999887     1222222212              2467899


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          653 YDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       653 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                      |...|++.+|+..|++++..+     +.+|....+++.++.++...|++++|. .+++.+....|+
T Consensus       176 ~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~-~~~~~l~~~~~~  235 (235)
T TIGR03302       176 YLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ-DAAAVLGANYPD  235 (235)
T ss_pred             HHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence            999999999999999999864     456888999999999999999999999 888888877653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.44  E-value=8.9e-12  Score=125.35  Aligned_cols=230  Identities=18%  Similarity=0.198  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                      .+..+...|..|...+++++|...|.++.......++....+..+...+.+|... ++++|+.+|+++++++...  +..
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~  110 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GRF  110 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-H
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcH
Confidence            3455667788888899999999999999999888888888888888888887666 9999999999999999876  445


Q ss_pred             HHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          472 PAVASVFVRLADLYHKI-GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      ...+.++..+|.+|... |++++|+++|++|+++++...   .......++..+|.++...|+|++|+..|++.......
T Consensus       111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            66788999999999999 999999999999999998743   45567788899999999999999999999998876544


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR--YTINEAADLFEEAR  628 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al  628 (728)
                      ...........+...+.+++..|++..|...+++..........   ..-...+..|-.++...  ..++.|+.-|....
T Consensus       188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~---s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS---SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT---SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred             ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence            32223344456677888999999999998888887655322222   22345566666666543  46888888887766


Q ss_pred             HH
Q 004829          629 TI  630 (728)
Q Consensus       629 ~~  630 (728)
                      ++
T Consensus       265 ~l  266 (282)
T PF14938_consen  265 RL  266 (282)
T ss_dssp             --
T ss_pred             cc
Confidence            65

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=3.9e-08  Score=98.61  Aligned_cols=453  Identities=13%  Similarity=0.055  Sum_probs=294.9

Q ss_pred             hHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCChhHHHHHHHHhhhhhhh
Q 004829          221 LGPFLLKQTREMISSG-ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHC-SLGQYNEAIPVLERSVEIPVL  298 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g-~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~  298 (728)
                      .+..|+.+|..+...| -+..+++.+.+.....      ..+..-.+.+...+|.+++ ...+++.|...+++|..+...
T Consensus         6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~   79 (629)
T KOG2300|consen    6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQF------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS   79 (629)
T ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhcc------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence            4667888888887774 1466777777666553      2223345667777877654 578899999999999987643


Q ss_pred             hcCCchhHhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          299 EDGQDHALAKFAGCMQLGDTYAMLG-QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA  377 (728)
Q Consensus       299 ~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  377 (728)
                      .+.  .-...+.+...|+.+|.... .+..|...+++++++....    .-......+.|+.++.-..++..|.+.+.-.
T Consensus        80 ip~--fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~----p~wsckllfQLaql~~idkD~~sA~elLavg  153 (629)
T KOG2300|consen   80 IPS--FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV----PYWSCKLLFQLAQLHIIDKDFPSALELLAVG  153 (629)
T ss_pred             ccc--HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHhhhccchhHHHHHhcc
Confidence            322  22456778899999999888 8899999999999996542    2334556788999999999999888774322


Q ss_pred             HHHHHHc------------------CCCCcHHHHHH------------------------HHHHH-HHHHHcCCHHHHHH
Q 004829          378 LDIHREN------------------TSPASIEEAAD------------------------RRLMG-LICDSKGDYEAALE  414 (728)
Q Consensus       378 l~~~~~~------------------~~~~~~~~a~~------------------------~~~lg-~~~~~~g~~~~A~~  414 (728)
                      .......                  ..++....-.+                        |..+- ..|...|+...+..
T Consensus       154 a~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~  233 (629)
T KOG2300|consen  154 AESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKP  233 (629)
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHH
Confidence            1111000                  00000000001                        11111 12334565555555


Q ss_pred             HHHHHHHHHHhcCC-------------ChhH--------HHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHhcCCC-
Q 004829          415 HYVLASMSMAANGH-------------ELDV--------ASIDCSIG--DAYLSLARFDEAIFSYHKALTAFKSAKGEN-  470 (728)
Q Consensus       415 ~~~~al~~~~~~~~-------------~~~~--------~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-  470 (728)
                      .+++..........             .+..        ..++..+-  .--...|-+++|.++-++++...++....+ 
T Consensus       234 ~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~  313 (629)
T KOG2300|consen  234 ALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADL  313 (629)
T ss_pred             HHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccc
Confidence            54433222211110             0111        11111111  111245778889998888888766653222 


Q ss_pred             -CH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          471 -HP----AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG-IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA  544 (728)
Q Consensus       471 -~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  544 (728)
                       .+    .....+-.+..+-.-.|++.+|++....+.+.+.+.... --....+.+...+|.....-+.++.|...|..|
T Consensus       314 ~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a  393 (629)
T KOG2300|consen  314 MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEA  393 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHH
Confidence             11    112344566777788999999999999999887664210 112235667778888888999999999999999


Q ss_pred             HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC------cHHHHHHHHHHHHHHHHcCCHH
Q 004829          545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK------SALFGIALNQMGLACVQRYTIN  618 (728)
Q Consensus       545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~  618 (728)
                      .+.....    ...+.+-.++|..|...|+-+.-.    ++++.   ++..+      ....+.+++..|...+.++++.
T Consensus       394 ~k~t~~~----dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~ln  462 (629)
T KOG2300|consen  394 TKLTESI----DLQAFCNLNLAISYLRIGDAEDLY----KALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLN  462 (629)
T ss_pred             HHhhhHH----HHHHHHHHhHHHHHHHhccHHHHH----HHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHH
Confidence            8875443    234566778999999988755432    23322   22221      1123567788888999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829          619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA  698 (728)
Q Consensus       619 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  698 (728)
                      +|...+.+.+++....  ....-....+..|+.+....|+..++.+...-++.+..++  +++|-......-+-.+|...
T Consensus       463 EaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~  538 (629)
T KOG2300|consen  463 EAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQAL  538 (629)
T ss_pred             HHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHh
Confidence            9999999999985221  1122344566788999999999999999999999998776  56777777777888899999


Q ss_pred             CC
Q 004829          699 GR  700 (728)
Q Consensus       699 g~  700 (728)
                      |+
T Consensus       539 g~  540 (629)
T KOG2300|consen  539 GE  540 (629)
T ss_pred             Cc
Confidence            88

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.43  E-value=5.7e-11  Score=116.99  Aligned_cols=195  Identities=13%  Similarity=0.079  Sum_probs=150.6

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      ....+..++.+|..+...|++++|+..|++++...     ++++....+++.+|.+|...|++++|+..|+++++.... 
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-  102 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-  102 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-
Confidence            45567789999999999999999999999998872     224455678899999999999999999999999998543 


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          509 NHGIPSEEIASGLIDIAAIYQSM--------NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN  580 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  580 (728)
                           .+....+++.+|.++...        |++++|+..|++++...+....    ...++..++..+.          
T Consensus       103 -----~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~a~~~~~~~~~----------  163 (235)
T TIGR03302       103 -----HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY----APDAKKRMDYLRN----------  163 (235)
T ss_pred             -----CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh----HHHHHHHHHHHHH----------
Confidence                 344556788899999876        8899999999999988665411    0111111111110          


Q ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004829          581 TLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRID  660 (728)
Q Consensus       581 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~  660 (728)
                          .              .......+|.+|+..|++.+|+..|++++..+     +++|....+++.+|.++..+|+++
T Consensus       164 ----~--------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~  220 (235)
T TIGR03302       164 ----R--------------LAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKD  220 (235)
T ss_pred             ----H--------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHH
Confidence                0              11234568889999999999999999999872     335667889999999999999999


Q ss_pred             HHHHHHHHHHH
Q 004829          661 DAIEILEYVVG  671 (728)
Q Consensus       661 ~A~~~~~~al~  671 (728)
                      +|..+++....
T Consensus       221 ~A~~~~~~l~~  231 (235)
T TIGR03302       221 LAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHHh
Confidence            99998887665

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.41  E-value=6.5e-09  Score=107.49  Aligned_cols=321  Identities=12%  Similarity=0.122  Sum_probs=208.7

Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829          347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN  426 (728)
Q Consensus       347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  426 (728)
                      +|.....|.....  +..|+..+-+..|.+|+...........+  ...+..+|..|...|+.+.|...|+++...  ..
T Consensus       345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~--~~Lw~~faklYe~~~~l~~aRvifeka~~V--~y  418 (835)
T KOG2047|consen  345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSP--GTLWVEFAKLYENNGDLDDARVIFEKATKV--PY  418 (835)
T ss_pred             CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCCh--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcC--Cc
Confidence            5666666665544  44788899999999988654333223333  346889999999999999999999998754  22


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----hcCCCCHH------HHHHHHHHHHHHHHcCChHHHHH
Q 004829          427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS----AKGENHPA------VASVFVRLADLYHKIGKLRDSKS  496 (728)
Q Consensus       427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~  496 (728)
                      +...+++.+|...|..-+...+++.|+.+.++|..+-..    .+.+.+|.      ...++..++.+....|-++....
T Consensus       419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~  498 (835)
T KOG2047|consen  419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA  498 (835)
T ss_pred             cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence            234567889999999999999999999999998765222    11222332      23566677888888899999999


Q ss_pred             HHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 004829          497 YCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS  576 (728)
Q Consensus       497 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  576 (728)
                      .|++.+++--.         .+.+..+.|..+....-+++|.+.|++.+.+++-.  ....+...|......-+.--..+
T Consensus       499 vYdriidLria---------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p--~v~diW~tYLtkfi~rygg~klE  567 (835)
T KOG2047|consen  499 VYDRIIDLRIA---------TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP--NVYDIWNTYLTKFIKRYGGTKLE  567 (835)
T ss_pred             HHHHHHHHhcC---------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc--cHHHHHHHHHHHHHHHhcCCCHH
Confidence            99999988422         34566788888888888999999999998876532  11123333333333334445789


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH--HHHHH
Q 004829          577 DSYNTLKSAISKFRTSGEKKSALFG-IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSN--LAGTY  653 (728)
Q Consensus       577 ~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--La~~~  653 (728)
                      .|..+|++|++.+       ++..+ .++...+.+-..-|-...|+..|++|-...       ++...-.+++  +..+.
T Consensus       568 raRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v-------~~a~~l~myni~I~kaa  633 (835)
T KOG2047|consen  568 RARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV-------KEAQRLDMYNIYIKKAA  633 (835)
T ss_pred             HHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHH
Confidence            9999999999853       23333 344455666666677777887777764431       2211111111  11111


Q ss_pred             HHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829          654 DAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       654 ~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                      ..-| ...-...|++|++..      .+..........|.+-...|..+.|.
T Consensus       634 e~yG-v~~TR~iYekaIe~L------p~~~~r~mclrFAdlEtklGEidRAR  678 (835)
T KOG2047|consen  634 EIYG-VPRTREIYEKAIESL------PDSKAREMCLRFADLETKLGEIDRAR  678 (835)
T ss_pred             HHhC-CcccHHHHHHHHHhC------ChHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            1112 233445666666643      23344555566677777777777776

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.39  E-value=7.2e-11  Score=118.79  Aligned_cols=230  Identities=15%  Similarity=0.137  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 004829          350 VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE  429 (728)
Q Consensus       350 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  429 (728)
                      .+..+...|.+|...+++++|..+|.++.........  ....+..+...+.+|... ++++|+.+|++|+.++...+..
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~  110 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF  110 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence            3456666778888999999999999999998887553  345566777777777666 9999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          430 LDVASIDCSIGDAYLSL-ARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       430 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      ...+.++..+|.+|... |++++|+++|++|+++++..  +.......++..+|.++...|+|++|+..|++........
T Consensus       111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~  188 (282)
T PF14938_consen  111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN  188 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999 99999999999999999886  2345567788899999999999999999999988764332


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 004829          509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYM--TGNYSDSYNTLKSAI  586 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al  586 (728)
                      .  .........+...+.+++..|++..|...+++.....+...+  ..-..+...|-.++-.  ...+..|+..|...-
T Consensus       189 ~--l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~--s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  189 N--LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS--SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             C--TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT--SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred             c--ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence            1  123445556677888999999999999999888766554422  2234444555555532  445666666666554


Q ss_pred             HH
Q 004829          587 SK  588 (728)
Q Consensus       587 ~~  588 (728)
                      .+
T Consensus       265 ~l  266 (282)
T PF14938_consen  265 RL  266 (282)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>PLN02789 farnesyltranstransferase

Probab=99.39  E-value=1.6e-10  Score=116.71  Aligned_cols=210  Identities=10%  Similarity=-0.016  Sum_probs=172.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004829          401 LICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA-RFDEAIFSYHKALTAFKSAKGENHPAVASVFV  479 (728)
Q Consensus       401 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  479 (728)
                      .++...+.+++|+..+.+++.+      .|....+|...+.++..+| ++++++..+.+++..        +|....++.
T Consensus        45 a~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~  110 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWH  110 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhH
Confidence            3445567888999999999877      6888889999999999999 689999999999998        888889999


Q ss_pred             HHHHHHHHcCCh--HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 004829          480 RLADLYHKIGKL--RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST  557 (728)
Q Consensus       480 ~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  557 (728)
                      ..+.++..+|+.  ++++.++++++++         ++....+|...+.++...|++++|+.++.++++..+..      
T Consensus       111 ~R~~~l~~l~~~~~~~el~~~~kal~~---------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------  175 (320)
T PLN02789        111 HRRWLAEKLGPDAANKELEFTRKILSL---------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------  175 (320)
T ss_pred             HHHHHHHHcCchhhHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc------
Confidence            999999999874  7889999999988         45577899999999999999999999999999986655      


Q ss_pred             HHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 004829          558 IAGIEAQMGVMYYMT---GNY----SDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ----RYTINEAADLFEE  626 (728)
Q Consensus       558 ~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~  626 (728)
                       ..+++.++.++...   |.+    ++++.+..+++.+        .+....+++.++.++..    .++..+|+..+.+
T Consensus       176 -~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~  246 (320)
T PLN02789        176 -NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE  246 (320)
T ss_pred             -hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence             45777788777665   333    4678888888887        34445788888888887    3556778888888


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829          627 ARTILEKEYGPYHHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       627 al~~~~~~~~~~~~~~~~~~~~La~~~~~~  656 (728)
                      ++..        .+....++..|+.+|...
T Consensus       247 ~~~~--------~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        247 VLSK--------DSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             hhcc--------cCCcHHHHHHHHHHHHhh
Confidence            7765        666677888999999763

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.35  E-value=2.9e-08  Score=105.17  Aligned_cols=404  Identities=18%  Similarity=0.115  Sum_probs=219.7

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---HcCCC
Q 004829          270 HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ---VLGET  346 (728)
Q Consensus       270 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~  346 (728)
                      ..|-..|...|.|++|.++.+.--        ..|   .-.+|++.|..+...++.+.|+++|+++-...-.   .+.++
T Consensus       830 DLlNKlyQs~g~w~eA~eiAE~~D--------RiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~  898 (1416)
T KOG3617|consen  830 DLLNKLYQSQGMWSEAFEIAETKD--------RIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY  898 (1416)
T ss_pred             HHHHHHHHhcccHHHHHHHHhhcc--------cee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence            345666777888888877665322        112   1235899999999999999999999986322111   11111


Q ss_pred             Ch---------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829          347 DH---------RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV  417 (728)
Q Consensus       347 ~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~  417 (728)
                      .+         .....|...|..+...|+.+.|+.+|..|.+                |+.+..+.+.+|+.++|-..-+
T Consensus       899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------------~fs~VrI~C~qGk~~kAa~iA~  962 (1416)
T KOG3617|consen  899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------------YFSMVRIKCIQGKTDKAARIAE  962 (1416)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------------hhhheeeEeeccCchHHHHHHH
Confidence            11         1123566778888889999999999888764                4445556666677666655443


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH------HHHhcCCCCHHHH---------HHHHHHH
Q 004829          418 LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA------FKSAKGENHPAVA---------SVFVRLA  482 (728)
Q Consensus       418 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~~~~---------~~~~~la  482 (728)
                      +.       +    .-.+.+.+|..|...|++.+|+.+|.+|-.+      +++..   -.+..         .-+...|
T Consensus       963 es-------g----d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd---~~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen  963 ES-------G----DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND---MKDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred             hc-------c----cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHhhcCchhHHHHH
Confidence            32       1    1235567777777777777777777665432      22210   00000         0011123


Q ss_pred             HHHHHcC-ChHHHHHHHHH------------------HHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH--
Q 004829          483 DLYHKIG-KLRDSKSYCEN------------------ALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLL--  541 (728)
Q Consensus       483 ~~~~~~g-~~~~A~~~~~~------------------al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--  541 (728)
                      ..|...| ....|..+|.+                  ++++..+-....   ..+..+..-+..+....+|++|..++  
T Consensus      1029 rYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~---sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1029 RYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG---SDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred             HHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC---CCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3333333 44444444433                  233332222112   23455677788888889999988765  


Q ss_pred             ----HHHHHHHhcC-------------C---CCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------HhC
Q 004829          542 ----NKALKIYGKT-------------P---GQQ--STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR------TSG  593 (728)
Q Consensus       542 ----~~al~~~~~~-------------~---~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~  593 (728)
                          +.|++++...             +   +..  .....++..+|.++.++|.|..|-+-|.+|-..+.      +.+
T Consensus      1106 ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSG 1185 (1416)
T KOG3617|consen 1106 AREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSG 1185 (1416)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcC
Confidence                4455554432             0   111  13456788999999999999999888887643322      112


Q ss_pred             CCC-----------------------------cHH----------HHHHHHHHHHHHHH--------cCCHHHHHHHHHH
Q 004829          594 EKK-----------------------------SAL----------FGIALNQMGLACVQ--------RYTINEAADLFEE  626 (728)
Q Consensus       594 ~~~-----------------------------~~~----------~~~~~~~la~~~~~--------~g~~~~A~~~~~~  626 (728)
                      +..                             .+.          .+.++..||..|..        ..+|++|...+++
T Consensus      1186 dt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~e 1265 (1416)
T KOG3617|consen 1186 DTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEE 1265 (1416)
T ss_pred             CcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHH
Confidence            110                             110          01233444444432        2456777777766


Q ss_pred             HHHHHHHhcCCCChhH--HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829          627 ARTILEKEYGPYHHDT--LGVYSNLAGTYDA----MGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR  700 (728)
Q Consensus       627 al~~~~~~~~~~~~~~--~~~~~~La~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  700 (728)
                      |.+-+.+.-..++...  ......++.+-..    +--.+++..-..++-.+.++-.-++.-.....+..|.+-|....+
T Consensus      1266 A~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~ 1345 (1416)
T KOG3617|consen 1266 AAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKN 1345 (1416)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhh
Confidence            6655444332222211  1111112221111    111122333333333332221112222345667778888889999


Q ss_pred             hhHHHHHHHHHHHhhccc
Q 004829          701 VRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       701 ~~~A~~~~l~~ll~~~~~  718 (728)
                      |..|. +.++.+....|.
T Consensus      1346 y~~Ay-Ral~el~~k~p~ 1362 (1416)
T KOG3617|consen 1346 YKPAY-RALTELQKKVPN 1362 (1416)
T ss_pred             ccHHH-HHHHHHhhcCCc
Confidence            99999 999888776664

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.32  E-value=1e-07  Score=98.99  Aligned_cols=300  Identities=14%  Similarity=0.113  Sum_probs=200.9

Q ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC-----------------------------Cc---HHH--H
Q 004829          348 HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP-----------------------------AS---IEE--A  393 (728)
Q Consensus       348 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------------------~~---~~~--a  393 (728)
                      ...+..|..||..|...|.+++|...|++++...-...+.                             ..   +..  +
T Consensus       245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a  324 (835)
T KOG2047|consen  245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA  324 (835)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence            3566789999999999999999999999997543111100                             00   000  0


Q ss_pred             -----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHH
Q 004829          394 -----------------------ADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD  450 (728)
Q Consensus       394 -----------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  450 (728)
                                             .+...+-.+-...|+..+-+..|..|+...............|..+|.+|...|+.+
T Consensus       325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~  404 (835)
T KOG2047|consen  325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD  404 (835)
T ss_pred             HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence                                   000112223334566677777777776554333334455678999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC---CCCCcHH------HHHHH
Q 004829          451 EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN---HGIPSEE------IASGL  521 (728)
Q Consensus       451 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~------~~~~~  521 (728)
                      .|...|+++...-=..    -.+.+.+|...|..-....+++.|+.++++|...-....   .....|-      ...+|
T Consensus       405 ~aRvifeka~~V~y~~----v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW  480 (835)
T KOG2047|consen  405 DARVIFEKATKVPYKT----VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW  480 (835)
T ss_pred             HHHHHHHHhhcCCccc----hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence            9999999998861111    334578899999999999999999999999876533210   0111121      23456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q 004829          522 IDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG  601 (728)
Q Consensus       522 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  601 (728)
                      ..++.+....|-++.-...|++.+++---.       +.+..+.|..+....-|++|.+.|++.+.+++-      +...
T Consensus       481 s~y~DleEs~gtfestk~vYdriidLriaT-------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~------p~v~  547 (835)
T KOG2047|consen  481 SMYADLEESLGTFESTKAVYDRIIDLRIAT-------PQIIINYAMFLEEHKYFEESFKAYERGISLFKW------PNVY  547 (835)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC------ccHH
Confidence            666777777777777777888777664333       456678888888889999999999999988632      2222


Q ss_pred             HHHH---HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH-HHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          602 IALN---QMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV-YSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       602 ~~~~---~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                      .+|+   .....-+.--..+.|..+|++|++.+       .|..+.. +...|.+-..-|-...|+..|++|..
T Consensus       548 diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  548 DIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            3332   22222333347999999999999973       4555443 44456666677888888888888755

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=2.5e-08  Score=93.93  Aligned_cols=225  Identities=16%  Similarity=0.136  Sum_probs=166.5

Q ss_pred             HHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829          277 CSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY  356 (728)
Q Consensus       277 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  356 (728)
                      .+..+|.+|++++..-.+..     +.    ....+..||.||+...+|..|..+|++.-.+        .|........
T Consensus        21 I~d~ry~DaI~~l~s~~Er~-----p~----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY   83 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERS-----PR----SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLY   83 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcC-----cc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHH
Confidence            56678999999887655442     11    2235889999999999999999999998777        7888888888


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 004829          357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID  436 (728)
Q Consensus       357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  436 (728)
                      .+..+++.+.+..|+.......+. +       .....++..-+.+.+..+++..+....++.-        ....+...
T Consensus        84 ~AQSLY~A~i~ADALrV~~~~~D~-~-------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--------~en~Ad~~  147 (459)
T KOG4340|consen   84 QAQSLYKACIYADALRVAFLLLDN-P-------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--------SENEADGQ  147 (459)
T ss_pred             HHHHHHHhcccHHHHHHHHHhcCC-H-------HHHHHHHHHHHHHhcccccCcchHHHHHhcc--------CCCccchh
Confidence            999999999999998877665432 1       1122345556667777888887777665421        12456778


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC-----
Q 004829          437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG-----  511 (728)
Q Consensus       437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----  511 (728)
                      .+.|.+.++.|+++.|++-|+.+++.        .......-++++.+++..|+++.|+++..+.++..-+..+.     
T Consensus       148 in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm  219 (459)
T KOG4340|consen  148 INLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGM  219 (459)
T ss_pred             ccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence            89999999999999999999999987        33334456789999999999999999998887754332110     


Q ss_pred             ----C-----------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829          512 ----I-----------PSEEIASGLIDIAAIYQSMNELEQAVKLLN  542 (728)
Q Consensus       512 ----~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  542 (728)
                          .           .......+++..+.++++.++++.|.+.+.
T Consensus       220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                0           011244566777888999999998876654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=99.30  E-value=2.9e-06  Score=95.15  Aligned_cols=475  Identities=12%  Similarity=0.024  Sum_probs=293.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829          220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE  299 (728)
Q Consensus       220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  299 (728)
                      ..+...+++|..++..-++++.|..+.++++.+.++.  +- ......+.+.++.++.+.+... |...+++.++..+. 
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~-~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-  131 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RL-TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-  131 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-
Confidence            4578889999999977679999999999999887551  11 1223455667899999888877 99999999987632 


Q ss_pred             cCCchhHhHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          300 DGQDHALAKFAGCMQL-GDTYAMLGQIENSILCYTAGLEIQRQVLGETDHR-VGETCRYVAEAHVQSLQFDEAEKICQMA  377 (728)
Q Consensus       300 ~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a  377 (728)
                        ..+... ..++..+ ...+...+++..|++.++.........   .++. ...+....+.+....+..+++++.++++
T Consensus       132 --~~~~~w-~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~  205 (608)
T PF10345_consen  132 --YGHSAW-YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHLRRGSPDDVLELLQRA  205 (608)
T ss_pred             --cCchhH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence              111111 1112222 233333379999999999998886532   1232 3334455566777788888899999988


Q ss_pred             HHHHHHc--CCCCcHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHhcCCCh-----------------------
Q 004829          378 LDIHREN--TSPASIEEAADRRLMGL--ICDSKGDYEAALEHYVLASMSMAANGHEL-----------------------  430 (728)
Q Consensus       378 l~~~~~~--~~~~~~~~a~~~~~lg~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------------------  430 (728)
                      .......  .+...+....++..+-.  ++...|++..+...+.+.-..+......+                       
T Consensus       206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~  285 (608)
T PF10345_consen  206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG  285 (608)
T ss_pred             HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence            7766543  11113333334444433  55677888888777666544433222111                       


Q ss_pred             -------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC---CCCH---------------HHHHHHH
Q 004829          431 -------------DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG---ENHP---------------AVASVFV  479 (728)
Q Consensus       431 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~---------------~~~~~~~  479 (728)
                                   ..+.+|..-|..+...+..++|.+++.+++...++...   ...+               ....++.
T Consensus       286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~  365 (608)
T PF10345_consen  286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLF  365 (608)
T ss_pred             CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHH
Confidence                         11233444566677778888999999999999888751   0000               1223455


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC----CCC
Q 004829          480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP----GQQ  555 (728)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~  555 (728)
                      .++.+..-.+++..|...+..+.....+.............++..|..+...|+.+.|+.+|.+.+-......    ...
T Consensus       366 y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~  445 (608)
T PF10345_consen  366 YQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFR  445 (608)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcch
Confidence            6677788899999999999998887665331112334577888899999999999999999986553332211    112


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHH-
Q 004829          556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG-EKKSALFGIALNQMGLACV--QRYTINEAADLFEEARTIL-  631 (728)
Q Consensus       556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~-  631 (728)
                      .....+..++..++...+.-......+.+.++..+... .........++..+-.++.  ..-...++...+.++++.+ 
T Consensus       446 El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~  525 (608)
T PF10345_consen  446 ELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMAN  525 (608)
T ss_pred             HHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHH
Confidence            22333445667777666554442222333333322221 1112222222222222221  2234568999999999988 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH---HHHHHHHHHHHhCChhHHHHHH
Q 004829          632 EKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVED---EKRRLAELLKEAGRVRNRKSRS  708 (728)
Q Consensus       632 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~---~~~~La~~~~~~g~~~~A~~~~  708 (728)
                      .....  ..-..-++..++..++ .|+..+.......+..+.++.  ++.....+   +-..++..+...|+.++|. ..
T Consensus       526 ~~~~n--~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~-~~  599 (608)
T PF10345_consen  526 NKLGN--SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--SDYSDQLWHLVASGMLADSYEVQGDRDKAE-EA  599 (608)
T ss_pred             Hhhcc--chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHcCcHHHHH-HH
Confidence            43321  2233445566666666 899999888888888877665  22222222   3336777899999999998 44


Q ss_pred             HHH
Q 004829          709 LVT  711 (728)
Q Consensus       709 l~~  711 (728)
                      ...
T Consensus       600 ~~~  602 (608)
T PF10345_consen  600 RQQ  602 (608)
T ss_pred             HHH
Confidence            333

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.28  E-value=3.1e-08  Score=104.95  Aligned_cols=338  Identities=14%  Similarity=0.122  Sum_probs=192.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHh------hhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          267 MCLHVLAAIHCSLGQYNEAIPVLERS------VEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQR  340 (728)
Q Consensus       267 ~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  340 (728)
                      ..|.++|....+..+.+-|.-++-..      ..+.+....++..      -...|.+...+|..++|..+|++.-..  
T Consensus       758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~------eakvAvLAieLgMlEeA~~lYr~ckR~--  829 (1416)
T KOG3617|consen  758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED------EAKVAVLAIELGMLEEALILYRQCKRY--  829 (1416)
T ss_pred             HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch------hhHHHHHHHHHhhHHHHHHHHHHHHHH--
Confidence            34777888887777777666554321      1111111222221      234566667889999999999887544  


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          341 QVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLAS  420 (728)
Q Consensus       341 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al  420 (728)
                                    -.|-..|...|.+++|.++.+.--          .+..-.+|++.+..+...++.+.|+++|+++-
T Consensus       830 --------------DLlNKlyQs~g~w~eA~eiAE~~D----------RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~  885 (1416)
T KOG3617|consen  830 --------------DLLNKLYQSQGMWSEAFEIAETKD----------RIHLRNTYYNYAKYLEARRDIEAALEYYEKAG  885 (1416)
T ss_pred             --------------HHHHHHHHhcccHHHHHHHHhhcc----------ceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence                          123455777888888876544322          12223468889999999999999999998862


Q ss_pred             ----HHHHhcCCChh----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829          421 ----MSMAANGHELD----------VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH  486 (728)
Q Consensus       421 ----~~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  486 (728)
                          ++.+...+.|.          ....|...|..+...|+.+.|+.+|..|-+.+                .+..+.+
T Consensus       886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f----------------s~VrI~C  949 (1416)
T KOG3617|consen  886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF----------------SMVRIKC  949 (1416)
T ss_pred             ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh----------------hheeeEe
Confidence                22211111111          12456677888888888888888888775542                2333444


Q ss_pred             HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHhcCCCCCCcHHH
Q 004829          487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKAL------KIYGKTPGQQSTIAG  560 (728)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~~  560 (728)
                      .+|+.++|....++.-              ...+.+.||+.|...|++.+|+.+|.+|.      .+.+++ +....++.
T Consensus       950 ~qGk~~kAa~iA~esg--------------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~n 1014 (1416)
T KOG3617|consen  950 IQGKTDKAARIAEESG--------------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLAN 1014 (1416)
T ss_pred             eccCchHHHHHHHhcc--------------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence            4455444443333211              11234455555555555555555554432      222222 11111000


Q ss_pred             ---------------HH-------HHHHHHHHHcCCHHHHHHHHHH-----HHHHH-HHhCCCCcHHHHHHHHHHHHHHH
Q 004829          561 ---------------IE-------AQMGVMYYMTGNYSDSYNTLKS-----AISKF-RTSGEKKSALFGIALNQMGLACV  612 (728)
Q Consensus       561 ---------------~~-------~~la~~~~~~g~~~~A~~~~~~-----al~~~-~~~~~~~~~~~~~~~~~la~~~~  612 (728)
                                     .|       ..-..+|.+.|.+.+|+++.-+     ++++. +++....+   +..+..-+..+.
T Consensus      1015 lal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD---p~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD---PKLLRRCADFFE 1091 (1416)
T ss_pred             HHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC---HHHHHHHHHHHH
Confidence                           00       0112345555555555544321     33332 23333333   367778888899


Q ss_pred             HcCCHHHHHHHHHH------HHHHHHHhc-----------C------CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          613 QRYTINEAADLFEE------ARTILEKEY-----------G------PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV  669 (728)
Q Consensus       613 ~~g~~~~A~~~~~~------al~~~~~~~-----------~------~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a  669 (728)
                      ...+|++|..++-.      |+.++....           .      ++......++..+|.++.++|.|..|-+-|.+|
T Consensus      1092 ~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence            99999999887644      444433211           1      112234568889999999999999999888877


Q ss_pred             H
Q 004829          670 V  670 (728)
Q Consensus       670 l  670 (728)
                      =
T Consensus      1172 G 1172 (1416)
T KOG3617|consen 1172 G 1172 (1416)
T ss_pred             h
Confidence            4

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.28  E-value=1.3e-08  Score=100.32  Aligned_cols=303  Identities=16%  Similarity=0.062  Sum_probs=210.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829          223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ  302 (728)
Q Consensus       223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  302 (728)
                      ......|..-+..| +|.+|.....++-+.       .  +.-..+|..-+.+.-.+|+++.|-.++.++-+..     .
T Consensus        85 ~~~~~egl~~l~eG-~~~qAEkl~~rnae~-------~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~  149 (400)
T COG3071          85 RKALNEGLLKLFEG-DFQQAEKLLRRNAEH-------G--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----G  149 (400)
T ss_pred             HHHHHHHHHHHhcC-cHHHHHHHHHHhhhc-------C--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----C
Confidence            44455566666776 899999888886542       2  3335667778889999999999999999998763     1


Q ss_pred             chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR  382 (728)
Q Consensus       303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  382 (728)
                      +.   ...+....+......|+++.|..-..++++.        .|....++.....+|...|++.+...++.+..+.. 
T Consensus       150 ~~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-  217 (400)
T COG3071         150 DD---TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-  217 (400)
T ss_pred             Cc---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-
Confidence            11   2335889999999999999999999999988        78888889999999999999998888776654321 


Q ss_pred             HcCCCCcHHHHHHHHHHHH--HHHHcCCHHHHHH---HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829          383 ENTSPASIEEAADRRLMGL--ICDSKGDYEAALE---HYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYH  457 (728)
Q Consensus       383 ~~~~~~~~~~a~~~~~lg~--~~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  457 (728)
                         --.... ..-+...+.  ++....+-..+..   +.+.   +......+|   .+...++.-+..+|+.++|.+..+
T Consensus       218 ---~l~~~e-~~~le~~a~~glL~q~~~~~~~~gL~~~W~~---~pr~lr~~p---~l~~~~a~~li~l~~~~~A~~~i~  287 (400)
T COG3071         218 ---LLSDEE-AARLEQQAWEGLLQQARDDNGSEGLKTWWKN---QPRKLRNDP---ELVVAYAERLIRLGDHDEAQEIIE  287 (400)
T ss_pred             ---CCChHH-HHHHHHHHHHHHHHHHhccccchHHHHHHHh---ccHHhhcCh---hHHHHHHHHHHHcCChHHHHHHHH
Confidence               111111 111222221  1112222222222   2221   111112223   344566778899999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829          458 KALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA  537 (728)
Q Consensus       458 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  537 (728)
                      ++++.      ..++.   ....++  ....+++..=++..++.++.         +++.+..+..||.+|++.+.|.+|
T Consensus       288 ~~Lk~------~~D~~---L~~~~~--~l~~~d~~~l~k~~e~~l~~---------h~~~p~L~~tLG~L~~k~~~w~kA  347 (400)
T COG3071         288 DALKR------QWDPR---LCRLIP--RLRPGDPEPLIKAAEKWLKQ---------HPEDPLLLSTLGRLALKNKLWGKA  347 (400)
T ss_pred             HHHHh------ccChh---HHHHHh--hcCCCCchHHHHHHHHHHHh---------CCCChhHHHHHHHHHHHhhHHHHH
Confidence            99886      12333   111111  23456777777777777776         334457899999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR  590 (728)
Q Consensus       538 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  590 (728)
                      ..+|+.++...+..        ..+..+|.++.++|+..+|.+.+++++.++.
T Consensus       348 ~~~leaAl~~~~s~--------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         348 SEALEAALKLRPSA--------SDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             HHHHHHHHhcCCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            99999988765443        4667899999999999999999999996543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.26  E-value=9.4e-08  Score=94.28  Aligned_cols=303  Identities=14%  Similarity=0.068  Sum_probs=207.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhH
Q 004829          353 TCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDV  432 (728)
Q Consensus       353 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  432 (728)
                      ....-|..-...|+|.+|+....++-+..+.      +  ...+..-+.....+|+++.|-.++.++-+..     ....
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~------p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~~~  152 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ------P--VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----GDDT  152 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc------h--HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----CCch
Confidence            3444566667789999999988885443221      1  2346666778889999999999998875431     1233


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829          433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI  512 (728)
Q Consensus       433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (728)
                      ..+...++.+....|+++.|.....++++.        .|....++.....+|...|++.+...++.+.-+.-      .
T Consensus       153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~------~  218 (400)
T COG3071         153 LAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG------L  218 (400)
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc------C
Confidence            456778899999999999999999999998        78888888999999999999999998887765431      1


Q ss_pred             CcHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          513 PSEEIASGLIDIAAI--YQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR  590 (728)
Q Consensus       513 ~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  590 (728)
                      -+.....-+-+.+..  +....+-..+.. +....+-.+......   ..+...++.-+...|+.++|.+...++++...
T Consensus       219 l~~~e~~~le~~a~~glL~q~~~~~~~~g-L~~~W~~~pr~lr~~---p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~  294 (400)
T COG3071         219 LSDEEAARLEQQAWEGLLQQARDDNGSEG-LKTWWKNQPRKLRND---PELVVAYAERLIRLGDHDEAQEIIEDALKRQW  294 (400)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhccHHhhcC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            122222223333222  222222222222 222222222211222   33445678888999999999999999987511


Q ss_pred             HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829          591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV  670 (728)
Q Consensus       591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al  670 (728)
                            ++   .....+  -...-+++..=++..++.++.        ||+.+..+..||.+|.+.+.|.+|..+|+.++
T Consensus       295 ------D~---~L~~~~--~~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl  355 (400)
T COG3071         295 ------DP---RLCRLI--PRLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWGKASEALEAAL  355 (400)
T ss_pred             ------Ch---hHHHHH--hhcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                  11   111111  223457777777778888777        88888899999999999999999999999998


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829          671 GMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD  714 (728)
Q Consensus       671 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~  714 (728)
                      ...        | ....+..+|.++.++|+..+|.+..-+.++.
T Consensus       356 ~~~--------~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         356 KLR--------P-SASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hcC--------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            843        2 3456788999999999999999444444433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.23  E-value=2e-09  Score=120.03  Aligned_cols=150  Identities=13%  Similarity=0.130  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829          308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP  387 (728)
Q Consensus       308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  387 (728)
                      .+.++..|...|...+++++|+..++.+++.        .|.....++.+|.++++.+++.++...  .++.+.+...  
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~--   97 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL--   97 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc--
Confidence            4566899999999999999999999988888        888899999999999999998777665  5555544332  


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829          388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK  467 (728)
Q Consensus       388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  467 (728)
                                          ++ .+++++...+.      +.+..-.+++.+|.||-.+|++++|...|++++++     
T Consensus        98 --------------------~~-~~ve~~~~~i~------~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-----  145 (906)
T PRK14720         98 --------------------KW-AIVEHICDKIL------LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA-----  145 (906)
T ss_pred             --------------------ch-hHHHHHHHHHH------hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence                                22 23333332221      12334458899999999999999999999999998     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY  505 (728)
Q Consensus       468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  505 (728)
                         +|..+.++.++|..|... ++++|+.++.+|+..+
T Consensus       146 ---D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        146 ---DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             ---CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence               789999999999999999 9999999999988763

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=2.7e-08  Score=91.89  Aligned_cols=210  Identities=14%  Similarity=0.071  Sum_probs=164.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829          407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH  486 (728)
Q Consensus       407 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  486 (728)
                      .+.++-+++....+.........++...++-.+..+....|+.+.|..++++....        .|...++...-|..+.
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lE   97 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLE   97 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHH
Confidence            34555666666555444433344566677778888888999999999998887665        4566667777899999


Q ss_pred             HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 004829          487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG  566 (728)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  566 (728)
                      ..|++++|+++|+..++-         +|....++...-.+...+|+.-+|++.+...++.+...       ..+|..++
T Consensus        98 a~~~~~~A~e~y~~lL~d---------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------~EAW~eLa  161 (289)
T KOG3060|consen   98 ATGNYKEAIEYYESLLED---------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------QEAWHELA  161 (289)
T ss_pred             HhhchhhHHHHHHHHhcc---------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------HHHHHHHH
Confidence            999999999999998765         34455566677777888999999999999999888766       57889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004829          567 VMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY---TINEAADLFEEARTILEKEYGPYHHDTL  643 (728)
Q Consensus       567 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~  643 (728)
                      .+|+..|+|++|.-++++.+-+        .|+....+..+|.+++-+|   +++-|.++|.+++++        .|...
T Consensus       162 eiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~  225 (289)
T KOG3060|consen  162 EIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNL  225 (289)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhH
Confidence            9999999999999999999876        5556678888898888776   688999999999999        77666


Q ss_pred             HHHHHHHHHHHHc
Q 004829          644 GVYSNLAGTYDAM  656 (728)
Q Consensus       644 ~~~~~La~~~~~~  656 (728)
                      .+++.+-.+....
T Consensus       226 ral~GI~lc~~~l  238 (289)
T KOG3060|consen  226 RALFGIYLCGSAL  238 (289)
T ss_pred             HHHHHHHHHHHHH
Confidence            6777665555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.22  E-value=8.4e-10  Score=122.43  Aligned_cols=158  Identities=8%  Similarity=-0.012  Sum_probs=135.3

Q ss_pred             HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 004829          487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG  566 (728)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  566 (728)
                      ..+....+...+-+++.+.+.      .+....++..||.+....|.+++|..+++.++++.++.       ..+..+++
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------~~a~~~~a  127 (694)
T PRK15179         61 RHAAVHKPAAALPELLDYVRR------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------SEAFILML  127 (694)
T ss_pred             HhhhhcchHhhHHHHHHHHHh------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------HHHHHHHH
Confidence            334444455555555555544      34457899999999999999999999999999998877       56788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829          567 VMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY  646 (728)
Q Consensus       567 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  646 (728)
                      .++.+++++++|+..+++++..        .+..+.+++.+|.++.+.|++++|+.+|++++.-        +|+...++
T Consensus       128 ~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~  191 (694)
T PRK15179        128 RGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGY  191 (694)
T ss_pred             HHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHH
Confidence            9999999999999999999987        5556789999999999999999999999999986        88888899


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          647 SNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       647 ~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      ..+|.++...|+.++|...|+++++..
T Consensus       192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        192 VGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999864

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.20  E-value=1.7e-10  Score=103.00  Aligned_cols=126  Identities=12%  Similarity=0.019  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829          538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI  617 (728)
Q Consensus       538 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  617 (728)
                      ..+|++++++.+..          +..+|.++...|++++|+.+|++++.+        .+....++..+|.++...|++
T Consensus        13 ~~~~~~al~~~p~~----------~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLSVDPET----------VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHHcCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhH
Confidence            45677887775442          456899999999999999999999987        455678999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829          618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE  697 (728)
Q Consensus       618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~  697 (728)
                      ++|+..|++++.+        +|....+++++|.++..+|++++|+..|++++.+.        |+....+..++.+...
T Consensus        75 ~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         75 TTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQIM  138 (144)
T ss_pred             HHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHH
Confidence            9999999999998        88888899999999999999999999999999954        6666666666665543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.19  E-value=1e-08  Score=108.09  Aligned_cols=253  Identities=18%  Similarity=0.151  Sum_probs=195.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhc----------CCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhH
Q 004829          237 ENPQKALELAKRAMKSFEICAN----------GKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHAL  306 (728)
Q Consensus       237 ~~~~~A~~~~~~Al~~~~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  306 (728)
                      +-.+.++...+.++..+.....          ...-|.....-..++..+...|-...|+..|++.-             
T Consensus       359 RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I~Erle-------------  425 (777)
T KOG1128|consen  359 RTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVIFERLE-------------  425 (777)
T ss_pred             cchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------------
Confidence            4566777666666655443211          01113445556678999999999999999998743             


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 004829          307 AKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS  386 (728)
Q Consensus       307 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  386 (728)
                          .|-....||...|+..+|..+..+-++-         +..+..|..+|.+....       .+|+++.++..... 
T Consensus       426 ----mw~~vi~CY~~lg~~~kaeei~~q~lek---------~~d~~lyc~LGDv~~d~-------s~yEkawElsn~~s-  484 (777)
T KOG1128|consen  426 ----MWDPVILCYLLLGQHGKAEEINRQELEK---------DPDPRLYCLLGDVLHDP-------SLYEKAWELSNYIS-  484 (777)
T ss_pred             ----HHHHHHHHHHHhcccchHHHHHHHHhcC---------CCcchhHHHhhhhccCh-------HHHHHHHHHhhhhh-
Confidence                2677888999999999998887776552         34445566666555444       45555555544332 


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004829          387 PASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA  466 (728)
Q Consensus       387 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  466 (728)
                            +.+...+|......++|.++.++++.++.+      .+.....|+.+|.+..+.+++..|..+|..++.+    
T Consensus       485 ------arA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL----  548 (777)
T KOG1128|consen  485 ------ARAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL----  548 (777)
T ss_pred             ------HHHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc----
Confidence                  234666777777899999999999999876      6788899999999999999999999999999998    


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK  546 (728)
Q Consensus       467 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  546 (728)
                          .|+...++++++..|...++-.+|...+++|++.-.         ....+|-+...+....|.+++|+..|.+.+.
T Consensus       549 ----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~---------~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  549 ----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY---------QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             ----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC---------CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence                999999999999999999999999999999998842         2345677777888999999999999999998


Q ss_pred             HHhcCC
Q 004829          547 IYGKTP  552 (728)
Q Consensus       547 ~~~~~~  552 (728)
                      +.....
T Consensus       616 ~~~~~~  621 (777)
T KOG1128|consen  616 LRKKYK  621 (777)
T ss_pred             hhhhcc
Confidence            877654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=3.9e-08  Score=92.63  Aligned_cols=377  Identities=11%  Similarity=-0.035  Sum_probs=210.0

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhh
Q 004829          216 LGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI  295 (728)
Q Consensus       216 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  295 (728)
                      ...|.....|.-+|.+|+... +|..|.++|++.-..+         |......+..+..+++.+.+.+|+.........
T Consensus        38 Er~p~~rAgLSlLgyCYY~~Q-~f~~AA~CYeQL~ql~---------P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~  107 (459)
T KOG4340|consen   38 ERSPRSRAGLSLLGYCYYRLQ-EFALAAECYEQLGQLH---------PELEQYRLYQAQSLYKACIYADALRVAFLLLDN  107 (459)
T ss_pred             hcCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC
Confidence            344555556666666666663 6777777776665543         333443444566666666777666666554321


Q ss_pred             hhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829          296 PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQ  375 (728)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  375 (728)
                               +...-.++..-+.+.+..+++..+..+.++.-          ....+....+.|.+.++.|+|+.|.+-|+
T Consensus       108 ---------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp----------~en~Ad~~in~gCllykegqyEaAvqkFq  168 (459)
T KOG4340|consen  108 ---------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP----------SENEADGQINLGCLLYKEGQYEAAVQKFQ  168 (459)
T ss_pred             ---------HHHHHHHHHHHHHHhcccccCcchHHHHHhcc----------CCCccchhccchheeeccccHHHHHHHHH
Confidence                     11111223333444445555555544443211          12456677888888999999999999999


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC------------------C-----ChhH
Q 004829          376 MALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG------------------H-----ELDV  432 (728)
Q Consensus       376 ~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------------~-----~~~~  432 (728)
                      .+++...-.+        ..-++++.++++.+++..|+++....+..-.+..                  +     ....
T Consensus       169 aAlqvsGyqp--------llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal  240 (459)
T KOG4340|consen  169 AALQVSGYQP--------LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL  240 (459)
T ss_pred             HHHhhcCCCc--------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence            9887653322        1356788899999999999998877765422110                  0     0122


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829          433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI  512 (728)
Q Consensus       433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (728)
                      ..+++..+.++++.++++.|.+.+...--..      .+...+.++.+++..-. .+++.+...-++-.+.+.       
T Consensus       241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa------E~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-------  306 (459)
T KOG4340|consen  241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRA------EEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-------  306 (459)
T ss_pred             HHHhhhhhhhhhhcccHHHHHHHhhcCCCcc------cccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-------
Confidence            4456666778888888888776553321110      01122345566654432 355666666555555551       


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHH
Q 004829          513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-TIAGIEAQMGVM-YYMTGNYSDSYNTLKSAISKFR  590 (728)
Q Consensus       513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~  590 (728)
                        |.-..++.++-.+|++..-|+-|...+-       +.+.... .+...++.|-.. -..+-..++|.+-+......+.
T Consensus       307 --PfP~ETFANlLllyCKNeyf~lAADvLA-------En~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~  377 (459)
T KOG4340|consen  307 --PFPPETFANLLLLYCKNEYFDLAADVLA-------ENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLT  377 (459)
T ss_pred             --CCChHHHHHHHHHHhhhHHHhHHHHHHh-------hCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence              1223455666667777665555544432       2211110 112222233222 2334556666655544332211


Q ss_pred             HhCCCCcHHHHHHHHHHH-HHHHH--c---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004829          591 TSGEKKSALFGIALNQMG-LACVQ--R---YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE  664 (728)
Q Consensus       591 ~~~~~~~~~~~~~~~~la-~~~~~--~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~  664 (728)
                                 .-+..++ .+...  .   .....|++.|+++++++           ..++...|++|+...+|..+.+
T Consensus       378 -----------~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-----------LPVlMa~AkiyW~~~Dy~~vEk  435 (459)
T KOG4340|consen  378 -----------EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY-----------LPVLMAQAKIYWNLEDYPMVEK  435 (459)
T ss_pred             -----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhccccccHHHHH
Confidence                       1111111 11111  1   12345666677776662           3366788999999999999999


Q ss_pred             HHHHHHHHHH
Q 004829          665 ILEYVVGMRE  674 (728)
Q Consensus       665 ~~~~al~~~~  674 (728)
                      .|+..++.+.
T Consensus       436 ~Fr~SvefC~  445 (459)
T KOG4340|consen  436 IFRKSVEFCN  445 (459)
T ss_pred             HHHHHHhhhc
Confidence            9999999773

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.17  E-value=4.3e-10  Score=100.40  Aligned_cols=125  Identities=17%  Similarity=0.125  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHH
Q 004829          371 EKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD  450 (728)
Q Consensus       371 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  450 (728)
                      ..+|++++.+.|..           +..+|.++...|++++|+.+|.+++.+      .|....++..+|.++...|+++
T Consensus        13 ~~~~~~al~~~p~~-----------~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~   75 (144)
T PRK15359         13 EDILKQLLSVDPET-----------VYASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMMLKEYT   75 (144)
T ss_pred             HHHHHHHHHcCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHH
Confidence            45678888776553           456899999999999999999998865      6778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH
Q 004829          451 EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ  529 (728)
Q Consensus       451 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~  529 (728)
                      +|+..|++++.+        .|....+++++|.++...|++++|+..|++++.+.         |.....+..++.+..
T Consensus        76 ~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~---------p~~~~~~~~~~~~~~  137 (144)
T PRK15359         76 TAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS---------YADASWSEIRQNAQI  137 (144)
T ss_pred             HHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHH
Confidence            999999999998        88899999999999999999999999999999983         334455555555544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.16  E-value=1.3e-09  Score=121.01  Aligned_cols=176  Identities=11%  Similarity=-0.023  Sum_probs=145.2

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh
Q 004829          218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV  297 (728)
Q Consensus       218 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  297 (728)
                      ..+.++.++.+++.-....+....+.+..-+++.+.+..      +..+.++.+||.+....|.+++|..+++.++++. 
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-  116 (694)
T PRK15179         44 SEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRY------PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-  116 (694)
T ss_pred             chhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhc------cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-
Confidence            334455555555544443336777777777777776554      5568889999999999999999999999999986 


Q ss_pred             hhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA  377 (728)
Q Consensus       298 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  377 (728)
                          +++..    ++..++.++.+++++++|+..+++++..        .|+.+.+++.+|.++...|++++|+.+|+++
T Consensus       117 ----Pd~~~----a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~  180 (694)
T PRK15179        117 ----PDSSE----AFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERL  180 (694)
T ss_pred             ----CCcHH----HHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence                55544    4899999999999999999999999998        8999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMA  424 (728)
Q Consensus       378 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  424 (728)
                      +...+.        ...++..+|.++...|+.++|...|++++....
T Consensus       181 ~~~~p~--------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        181 SRQHPE--------FENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HhcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            973221        135689999999999999999999999987753

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.13  E-value=4e-09  Score=99.50  Aligned_cols=125  Identities=14%  Similarity=0.112  Sum_probs=98.1

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004829          572 TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAG  651 (728)
Q Consensus       572 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~  651 (728)
                      .++.++++..+++++..        .+.....|..+|.+|...|++++|+..|++++.+        .|+...++..+|.
T Consensus        52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~  115 (198)
T PRK10370         52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT  115 (198)
T ss_pred             chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            55667777778777776        3445678888888888888888888888888888        7777778888888


Q ss_pred             HH-HHcCC--hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          652 TY-DAMGR--IDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       652 ~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                      ++ ...|+  +++|...++++++        .+|....++..||..+...|++++|+ ..++.+++..|...+
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~--------~dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~~~~  179 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALA--------LDANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCcc
Confidence            64 66676  4888888888888        35777788888888888888888888 888888887777554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.11  E-value=1.2e-08  Score=114.12  Aligned_cols=236  Identities=13%  Similarity=0.051  Sum_probs=173.1

Q ss_pred             cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhh
Q 004829          214 AGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSV  293 (728)
Q Consensus       214 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  293 (728)
                      ...-+|....++..+...+...+ ++++|+..++.++...         |....+|+.+|.++++.+++.++...  .++
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~-~~deai~i~~~~l~~~---------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l   90 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSEN-LTDEAKDICEEHLKEH---------KKSISALYISGILSLSRRPLNDSNLL--NLI   90 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhC---------CcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence            44557888999999999998986 9999999999888753         55677788999999999999998877  666


Q ss_pred             hhhhhhcCCchhHh----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829          294 EIPVLEDGQDHALA----------KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ  363 (728)
Q Consensus       294 ~~~~~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  363 (728)
                      .+........-...          .-.+++.+|.||..+|++++|...|++++++        +|..+.++.++|..|..
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEE  162 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHH
Confidence            65532211100000          1136899999999999999999999999999        79999999999999999


Q ss_pred             hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 004829          364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAY  443 (728)
Q Consensus       364 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  443 (728)
                      . ++++|+.++.+|+..+-........  -  -.....+.....+++.-....++.+..    -.....+..+.-+=.+|
T Consensus       163 ~-dL~KA~~m~~KAV~~~i~~kq~~~~--~--e~W~k~~~~~~~d~d~f~~i~~ki~~~----~~~~~~~~~~~~l~~~y  233 (906)
T PRK14720        163 E-DKEKAITYLKKAIYRFIKKKQYVGI--E--EIWSKLVHYNSDDFDFFLRIERKVLGH----REFTRLVGLLEDLYEPY  233 (906)
T ss_pred             h-hHHHHHHHHHHHHHHHHhhhcchHH--H--HHHHHHHhcCcccchHHHHHHHHHHhh----hccchhHHHHHHHHHHH
Confidence            9 9999999999999875433321111  1  111222333333444433333332211    11334455666777889


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829          444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH  486 (728)
Q Consensus       444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  486 (728)
                      ....+|++++.+++.+|++        .+....+...++.+|.
T Consensus       234 ~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        234 KALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK  268 (906)
T ss_pred             hhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH
Confidence            9999999999999999998        7777888889998887

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.07  E-value=7.8e-09  Score=97.51  Aligned_cols=153  Identities=18%  Similarity=0.210  Sum_probs=122.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 004829          357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID  436 (728)
Q Consensus       357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  436 (728)
                      -+..|+..|+++......++...  +.                 .-+...++.++++..+++++..      .|.....|
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~--~~-----------------~~~~~~~~~~~~i~~l~~~L~~------~P~~~~~w   76 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLAD--PL-----------------HQFASQQTPEAQLQALQDKIRA------NPQNSEQW   76 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhC--cc-----------------ccccCchhHHHHHHHHHHHHHH------CCCCHHHH
Confidence            34568889998876544322111  00                 0111256678888888888765      67778899


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHHHcCCCCCCC
Q 004829          437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY-HKIGK--LRDSKSYCENALKIYGKPNHGIP  513 (728)
Q Consensus       437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~  513 (728)
                      ..+|.+|...|++++|+..|++++.+        .|....++..+|.++ ...|+  +++|...++++++.         
T Consensus        77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~---------  139 (198)
T PRK10370         77 ALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL---------  139 (198)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---------
Confidence            99999999999999999999999999        888899999999975 67787  59999999999999         


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      +|....++..+|..++..|++++|+.++++++++.+..
T Consensus       140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            44467889999999999999999999999999987654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=2e-07  Score=86.27  Aligned_cols=207  Identities=13%  Similarity=-0.011  Sum_probs=163.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHH
Q 004829          237 ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLG  316 (728)
Q Consensus       237 ~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la  316 (728)
                      .+.++-++++.+.+.....-   ...++....+-.+..+....|+.+-|..++++....+     +....    +...-|
T Consensus        26 rnseevv~l~~~~~~~~k~~---~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-----p~S~R----V~~lka   93 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSG---ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-----PGSKR----VGKLKA   93 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhc---ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-----CCChh----HHHHHH
Confidence            47888888888887765443   2225566677788888889999999999999877654     33332    356678


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 004829          317 DTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADR  396 (728)
Q Consensus       317 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~  396 (728)
                      ..+...|++++|+++|+..++-        +|....++..--.+...+|+--+|++.+...++.+...        ..+|
T Consensus        94 m~lEa~~~~~~A~e~y~~lL~d--------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D--------~EAW  157 (289)
T KOG3060|consen   94 MLLEATGNYKEAIEYYESLLED--------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND--------QEAW  157 (289)
T ss_pred             HHHHHhhchhhHHHHHHHHhcc--------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc--------HHHH
Confidence            8889999999999999998866        77777777777777888999999999999999887654        3469


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829          397 RLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA---RFDEAIFSYHKALTAFKSAKGENHPA  473 (728)
Q Consensus       397 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~  473 (728)
                      ..++.+|...|+|++|.-++++.+-+      .|.....+..+|.+++.+|   ++.-|..+|.+++++        .+.
T Consensus       158 ~eLaeiY~~~~~f~kA~fClEE~ll~------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~  223 (289)
T KOG3060|consen  158 HELAEIYLSEGDFEKAAFCLEELLLI------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPK  223 (289)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChH
Confidence            99999999999999999999998755      5777778888888888777   567899999999998        666


Q ss_pred             HHHHHHHHHHHH
Q 004829          474 VASVFVRLADLY  485 (728)
Q Consensus       474 ~~~~~~~la~~~  485 (728)
                      ...+++.+-.+.
T Consensus       224 ~~ral~GI~lc~  235 (289)
T KOG3060|consen  224 NLRALFGIYLCG  235 (289)
T ss_pred             hHHHHHHHHHHH
Confidence            666666554443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.04  E-value=1.7e-08  Score=94.33  Aligned_cols=167  Identities=17%  Similarity=0.115  Sum_probs=140.7

Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .|....+ ..++..+...|+-+.+..+..++...         ++.....+..+|...+..|+|..|+..++++..+.+.
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~---------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~  132 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA---------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT  132 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc---------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence            6776777 89999999999999999888886655         2334445566999999999999999999999988666


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      .       +..+..+|.+|.+.|++++|...|.+++++.        +....++.++|..|.-.|+++.|..++..+...
T Consensus       133 d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         133 D-------WEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             C-------hhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            5       6788899999999999999999999999983        223478999999999999999999999998876


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829          631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV  670 (728)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al  670 (728)
                              .+....+..+|+.+...+|++++|.....+-+
T Consensus       198 --------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         198 --------PAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             --------CCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence                    44456688999999999999999988765544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.03  E-value=5.4e-08  Score=102.74  Aligned_cols=222  Identities=17%  Similarity=0.147  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829          395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV  474 (728)
Q Consensus       395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  474 (728)
                      ....++..+...|-...|+..|++.              ..|.....||...|+..+|.....+-++         .+..
T Consensus       400 ~q~~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~~q~le---------k~~d  456 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEINRQELE---------KDPD  456 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHHHHHhc---------CCCc
Confidence            4556788888888888888888763              3566777788888888888877766655         2233


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829          475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ  554 (728)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  554 (728)
                      +..|..+       |++-.=-.+|+++.++...        ..+.+...+|......++|.++.++++..+++.+-.   
T Consensus       457 ~~lyc~L-------GDv~~d~s~yEkawElsn~--------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---  518 (777)
T KOG1128|consen  457 PRLYCLL-------GDVLHDPSLYEKAWELSNY--------ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ---  518 (777)
T ss_pred             chhHHHh-------hhhccChHHHHHHHHHhhh--------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc---
Confidence            3444444       4444444566666666433        234456667777777888888888888888775544   


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE  634 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  634 (728)
                          ..+|+.+|.+..+.+++..|.++|..++.+        .+..+.+|++++.+|...++-.+|...+++|++.    
T Consensus       519 ----~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc----  582 (777)
T KOG1128|consen  519 ----LGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC----  582 (777)
T ss_pred             ----hhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc----
Confidence                457788888888888888888888888877        4556788888888888888888888888888887    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004829          635 YGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKL  677 (728)
Q Consensus       635 ~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~  677 (728)
                          +.....++.|...+....|.+++|+..|.+.+.+.+...
T Consensus       583 ----n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  583 ----NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             ----CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence                334444667777778888888888888888888776554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.03  E-value=1.1e-08  Score=89.18  Aligned_cols=109  Identities=15%  Similarity=0.045  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                      ....+.+|..++..|++++|...|+-...+        ++.....+++||.++..+|++++|+..|.+++.+        
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--------   98 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--------   98 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------
Confidence            455678999999999999999999999887        6667899999999999999999999999999999        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 004829          639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEK  688 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~  688 (728)
                      +|+.+..++++|.|+...|+.+.|...|+.++..+.     .+|......
T Consensus        99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~  143 (157)
T PRK15363         99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILR  143 (157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHH
Confidence            788888999999999999999999999999999872     456655444

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=99.02  E-value=0.00012  Score=82.29  Aligned_cols=431  Identities=14%  Similarity=0.073  Sum_probs=268.9

Q ss_pred             hhHHHHHHHHHHHHH-HcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          263 LEQVMCLHVLAAIHC-SLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ  341 (728)
Q Consensus       263 ~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  341 (728)
                      ...+.++..+|.+++ ...+++.|..++++++.+...   ..-....+.+.+.++.+|...+... |...+++.++..+.
T Consensus        56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~  131 (608)
T PF10345_consen   56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET  131 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence            345778889999988 788999999999999988744   3333445667788899999988877 99999999988765


Q ss_pred             HcCCCChHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          342 VLGETDHRVGETCRYV-AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLAS  420 (728)
Q Consensus       342 ~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al  420 (728)
                      .   .+.....++..+ ...+...+++..|++.++.........+++  .....+....+.+....+..+++++...++.
T Consensus       132 ~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~--~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~  206 (608)
T PF10345_consen  132 Y---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP--AVFVLASLSEALLHLRRGSPDDVLELLQRAI  206 (608)
T ss_pred             c---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence            1   122233333333 333334479999999999999988755543  2234445556777888888999999998886


Q ss_pred             HHHHhc----CCChhHHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHhcCCC------------------------
Q 004829          421 MSMAAN----GHELDVASIDCSIGD--AYLSLARFDEAIFSYHKALTAFKSAKGEN------------------------  470 (728)
Q Consensus       421 ~~~~~~----~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------  470 (728)
                      ......    ...+....++..+-.  ++...|++..+...+++.-..........                        
T Consensus       207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~  286 (608)
T PF10345_consen  207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGG  286 (608)
T ss_pred             HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCC
Confidence            655533    112223334443333  45677887787777666555444332110                        


Q ss_pred             ----------CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC---CCCCcH--------------HHHHHHHH
Q 004829          471 ----------HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN---HGIPSE--------------EIASGLID  523 (728)
Q Consensus       471 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~--------------~~~~~~~~  523 (728)
                                ....+.+|..-|......+..++|.++++++++..++..   ......              -...++..
T Consensus       287 ~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y  366 (608)
T PF10345_consen  287 TPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFY  366 (608)
T ss_pred             ceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHH
Confidence                      001223444456667777888899999999999877644   000000              02234455


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCCCcH
Q 004829          524 IAAIYQSMNELEQAVKLLNKALKIYGKTPGQ--QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS---GEKKSA  598 (728)
Q Consensus       524 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~  598 (728)
                      ++.+.+-.+++..|...+..+.......+..  ......+++..|..+...|+.+.|..+|.+..-.....   ......
T Consensus       367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E  446 (608)
T PF10345_consen  367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE  446 (608)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence            6777788999999999999988887765432  23446678889999999999999999998554333221   122234


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHH-H
Q 004829          599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG-PYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEYVVGMR-E  674 (728)
Q Consensus       599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~al~~~-~  674 (728)
                      ....+..++..++...+.......-+.+.++..+.... ..+.....++..+-.++..  .-...++...+.++++.. .
T Consensus       447 l~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~  526 (608)
T PF10345_consen  447 LYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANN  526 (608)
T ss_pred             HHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHH
Confidence            44556667777777665433322222233322211111 1122333333333333322  223458999999999887 3


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829          675 EKLGTANPDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       675 ~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                      .. + .+--..-++.-++..+. .|+..+..
T Consensus       527 ~~-~-n~~l~~~~L~lm~~~lf-~~~~~e~~  554 (608)
T PF10345_consen  527 KL-G-NSQLLAILLNLMGHRLF-EGDVGEQA  554 (608)
T ss_pred             hh-c-cchHHHHHHHHHHHHHH-cCCHHHHH
Confidence            22 2 22333445556666666 78888766

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.02  E-value=2.3e-09  Score=84.77  Aligned_cols=76  Identities=26%  Similarity=0.341  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829          598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE  674 (728)
Q Consensus       598 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~  674 (728)
                      +..+.++.++|.+|..+|++++|+.+|++++++ .+..++.++..+.++.++|.+|..+|++++|+.++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            456789999999999999999999999999999 6667778888999999999999999999999999999999875

...

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=99.01  E-value=7.3e-08  Score=108.71  Aligned_cols=444  Identities=16%  Similarity=0.111  Sum_probs=297.6

Q ss_pred             HHHHHHHHHHHHHHH-HHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829          239 PQKALELAKRAMKSF-EICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD  317 (728)
Q Consensus       239 ~~~A~~~~~~Al~~~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  317 (728)
                      .++|++++..++... ...+.-...|+   +.+-++......+++.+|...=+.++++.+...+.++|. .+..+..++.
T Consensus       640 ~~dav~~~~~al~k~~~~~~~~~fnp~---~f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd-~~Ks~~d~sv  715 (1236)
T KOG1839|consen  640 LDDAVKYATKALVKLVAVCGPYGFNPA---GFYSLAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPD-TMKSYGDLSV  715 (1236)
T ss_pred             hHHHHHHHHHHHHHHHhhhcccccCcc---ccccCceEecCccccchhhhhhHhHHHHHHHHhccccch-hHHhccccce
Confidence            456777766655433 22222112232   233336777788898999998899998887777777765 3556777777


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 004829          318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRR  397 (728)
Q Consensus       318 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~  397 (728)
                      .++....+++|+.+-.+.+.+.-...+..+|..+..+.+.+..-...+  +-+.+.+..+++-........++..+.. .
T Consensus       716 ~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H  792 (1236)
T KOG1839|consen  716 FPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-H  792 (1236)
T ss_pred             eeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-H
Confidence            777777889999999999988777766667766655444443333333  6677777777777766666666555544 3


Q ss_pred             HHHHHHHH---cCCHHHHHHHHHHHHHHH----HhcCCChh---------------------------HHHHHHHHHHHH
Q 004829          398 LMGLICDS---KGDYEAALEHYVLASMSM----AANGHELD---------------------------VASIDCSIGDAY  443 (728)
Q Consensus       398 ~lg~~~~~---~g~~~~A~~~~~~al~~~----~~~~~~~~---------------------------~~~~~~~la~~~  443 (728)
                      .+..++..   .....++....-++..+-    ......+.                           ...-...+..+.
T Consensus       793 ~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~  872 (1236)
T KOG1839|consen  793 ALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETIL  872 (1236)
T ss_pred             HHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHh
Confidence            33332222   223222222222221000    00000010                           000011111222


Q ss_pred             HHhCCHHHHH---HHHHHHHHHHHHhcCC-----------------------CCH--HHHHHHHHHHHHHHHcCChHHHH
Q 004829          444 LSLARFDEAI---FSYHKALTAFKSAKGE-----------------------NHP--AVASVFVRLADLYHKIGKLRDSK  495 (728)
Q Consensus       444 ~~~g~~~~A~---~~~~~al~~~~~~~~~-----------------------~~~--~~~~~~~~la~~~~~~g~~~~A~  495 (728)
                      ...|...-+.   ..+..-+....+.+..                       ..|  ..+.-....+......|.+.+|.
T Consensus       873 ~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~  952 (1236)
T KOG1839|consen  873 LKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAY  952 (1236)
T ss_pred             hhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhh
Confidence            2222211111   1111111111111000                       011  22233445566667778888888


Q ss_pred             HHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCC
Q 004829          496 SYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGN  574 (728)
Q Consensus       496 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~  574 (728)
                      + .-+++.++.... +..++..+..|..++.++...+++++|+.+-.++.-+.....+..+ .....+.+++...+..++
T Consensus       953 ~-~~~slnl~~~v~-~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~ 1030 (1236)
T KOG1839|consen  953 E-LPESLNLLNNVM-GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKN 1030 (1236)
T ss_pred             h-hhhhhhHHHHhh-hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccC
Confidence            8 777777766544 5568899999999999999999999999999999888887766654 566778899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004829          575 YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD  654 (728)
Q Consensus       575 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~  654 (728)
                      ...|...+.++..+..-..+..+|..+....+++.++...++++.|+.+++.|+.+.....++..-.....+..+++++.
T Consensus      1031 ~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1031 LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred             ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence            99999999999998776666666667888899999999999999999999999999999999888888999999999999


Q ss_pred             HcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004829          655 AMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRL  691 (728)
Q Consensus       655 ~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L  691 (728)
                      .++++..|+...+....++...+|++|+........+
T Consensus      1111 s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~ 1147 (1236)
T KOG1839|consen 1111 SMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWL 1147 (1236)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHH
Confidence            9999999999999999999999999998776554433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.99  E-value=3.4e-08  Score=92.30  Aligned_cols=166  Identities=15%  Similarity=0.164  Sum_probs=139.8

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      .|....+ .+++..+...|+-+.+..+..+++..        ++.....+..+|......|+|..|+..+.++..+    
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----  129 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----  129 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence            4555556 88899999999999999888887665        6666666777999999999999999999999988    


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                           .|..+.+|..+|.+|.+.|+++.|...|.+++++.+..       ..+..++|..|.-.|+++.|..++..+...
T Consensus       130 -----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-------p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         130 -----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE-------PSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             -----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-------chhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence                 34467889999999999999999999999999998766       357789999999999999999999988764


Q ss_pred             HHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA  627 (728)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  627 (728)
                              +.....+..+++.+...+|++.+|...-.+-
T Consensus       198 --------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         198 --------PAADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             --------CCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence                    2223468889999999999999998766543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.99  E-value=7e-09  Score=98.68  Aligned_cols=122  Identities=20%  Similarity=0.235  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004829          516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK  595 (728)
Q Consensus       516 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  595 (728)
                      ..+..+..-|.-+...++|++|+..|.+|+++.+..       +..|.+.+.+|.++|.++.|++.++.|+.+       
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------  144 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESALSI-------  144 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence            456677888999999999999999999999998776       567889999999999999999999999998       


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004829          596 KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRID  660 (728)
Q Consensus       596 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~  660 (728)
                       ++.+..+|..||.+|..+|++++|++.|++++++        +|+......+|..+-..++...
T Consensus       145 -Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  145 -DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             -ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence             7888999999999999999999999999999999        8888777888877777766655

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.98  E-value=5.2e-09  Score=99.57  Aligned_cols=121  Identities=19%  Similarity=0.205  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829          558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP  637 (728)
Q Consensus       558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  637 (728)
                      .+..+..-|.-+.+.++|.+|+..|.+||++        .+..+..|.+.|.+|.++|.++.|++.++.|+.+       
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------  144 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-------  144 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence            3444566788889999999999999999998        5566789999999999999999999999999999       


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChh
Q 004829          638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVR  702 (728)
Q Consensus       638 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~  702 (728)
                       +|....+|..||.+|..+|++++|++.|++++++.        |+......+|..+-..++...
T Consensus       145 -Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld--------P~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  145 -DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD--------PDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             -ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC--------CCcHHHHHHHHHHHHHhcCCC
Confidence             99999999999999999999999999999999964        666566666666666655554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.97  E-value=2.7e-09  Score=84.34  Aligned_cols=77  Identities=30%  Similarity=0.552  Sum_probs=69.5

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (728)
                      +|..+.++.++|.+|..+|++++|+.+|++++++ .+..|++++..+.++.++|.++..+|++++|+.++++++++++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            3677889999999999999999999999999999 6666777888899999999999999999999999999999864

...

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.95  E-value=3.1e-05  Score=84.54  Aligned_cols=341  Identities=12%  Similarity=0.009  Sum_probs=217.5

Q ss_pred             CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh
Q 004829          219 PALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL  298 (728)
Q Consensus       219 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  298 (728)
                      +...+.+...+.-+...| .+.+|+++.-.|-.         + ...+..+...+.-.+..++..--..+.+..    +.
T Consensus       344 ~~~~~lH~~Aa~w~~~~g-~~~eAI~hAlaA~d---------~-~~aa~lle~~~~~L~~~~~lsll~~~~~~l----P~  408 (894)
T COG2909         344 ARLKELHRAAAEWFAEHG-LPSEAIDHALAAGD---------P-EMAADLLEQLEWQLFNGSELSLLLAWLKAL----PA  408 (894)
T ss_pred             CchhHHHHHHHHHHHhCC-ChHHHHHHHHhCCC---------H-HHHHHHHHhhhhhhhcccchHHHHHHHHhC----CH
Confidence            344556666666666665 88888888766522         1 112333444455566666544333332221    10


Q ss_pred             hcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          299 EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV-LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA  377 (728)
Q Consensus       299 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  377 (728)
                      ..-..+|    ......++......++.+|..+..++....... .+......+......|.+....|+++.|+++.+.+
T Consensus       409 ~~l~~~P----~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~a  484 (894)
T COG2909         409 ELLASTP----RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLA  484 (894)
T ss_pred             HHHhhCc----hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            0011122    235667888888999999999998887664321 00012234455566778888999999999999999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004829          378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYH  457 (728)
Q Consensus       378 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  457 (728)
                      +...+....   ...+.++..+|.+..-.|++++|..+..++.+..+..+.......+....+.++..+|+...|  .-.
T Consensus       485 l~~L~~~~~---~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a--~~~  559 (894)
T COG2909         485 LVQLPEAAY---RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARA--EQE  559 (894)
T ss_pred             HHhcccccc---hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHH--HHH
Confidence            988776643   344567888999999999999999999999999888888777788888889999999933322  222


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829          458 KALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA  537 (728)
Q Consensus       458 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  537 (728)
                      ++............+.........+.++...-+++.+..-....+.+.....  .......-.++.|+.+++..|++++|
T Consensus       560 ~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~--~~~~~~~~~~~~LA~l~~~~Gdl~~A  637 (894)
T COG2909         560 KAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT--PQPLLSRLALSMLAELEFLRGDLDKA  637 (894)
T ss_pred             HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc--cchhHHHHHHHHHHHHHHhcCCHHHH
Confidence            2322222221122333222333333333333347777777777666644322  11222333346899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSA  585 (728)
Q Consensus       538 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  585 (728)
                      ...+.+...+...........+.++.........+|+..+|.....+.
T Consensus       638 ~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         638 LAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            999999998887663233345555555556667889999988877763

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.95  E-value=4.2e-07  Score=86.53  Aligned_cols=183  Identities=17%  Similarity=0.166  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829          433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI  512 (728)
Q Consensus       433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (728)
                      ...++..|..++..|+|.+|+..|++.+..+.     ..+....+.+.+|.+++..|++++|+..+++.+..+..     
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-----~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-----   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYP-----NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-----   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-----TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----
Confidence            45667778888888888888888888776633     35666777888888888888888888888888877544     


Q ss_pred             CcHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829          513 PSEEIASGLIDIAAIYQSMN-----------ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNT  581 (728)
Q Consensus       513 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  581 (728)
                       ++....+++.+|.+++.+.           ...+|+..|+..+..+|+..                     -..+|...
T Consensus        75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~---------------------y~~~A~~~  132 (203)
T PF13525_consen   75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE---------------------YAEEAKKR  132 (203)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST---------------------THHHHHHH
T ss_pred             -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch---------------------HHHHHHHH
Confidence             4556677777777765442           34577888888887776652                     11223332


Q ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH
Q 004829          582 LKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD  661 (728)
Q Consensus       582 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~  661 (728)
                      +..+-..           .+.--..+|..|+..|.|..|+..++.+++.+     |+.+....++..++..|.++|..+.
T Consensus       133 l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~  196 (203)
T PF13525_consen  133 LAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQA  196 (203)
T ss_dssp             HHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHH
Confidence            2222221           23445567899999999999999999998874     3466677789999999999999885


Q ss_pred             HH
Q 004829          662 AI  663 (728)
Q Consensus       662 A~  663 (728)
                      |.
T Consensus       197 a~  198 (203)
T PF13525_consen  197 AD  198 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.94  E-value=3.1e-08  Score=91.53  Aligned_cols=118  Identities=13%  Similarity=0.040  Sum_probs=98.1

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829          557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG  636 (728)
Q Consensus       557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  636 (728)
                      ..+.++..+|.++...|++++|+..|++++.+..     .+...+.++.++|.++...|++++|+.+|++++.+      
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~------  101 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------  101 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            3466788999999999999999999999998732     23334578999999999999999999999999988      


Q ss_pred             CCChhHHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 004829          637 PYHHDTLGVYSNLAGTYD-------AMGRIDDAIEILEYVVGMREEKLGTANPDVEDE  687 (728)
Q Consensus       637 ~~~~~~~~~~~~La~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~  687 (728)
                        +|.....+.++|.++.       .+|+++.|+..+.+++..+++.++.+++....+
T Consensus       102 --~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~  157 (168)
T CHL00033        102 --NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEA  157 (168)
T ss_pred             --CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHH
Confidence              5665666667777776       899999999999999999999988777555433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.94  E-value=1.8e-08  Score=89.50  Aligned_cols=111  Identities=15%  Similarity=0.192  Sum_probs=94.8

Q ss_pred             HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHH
Q 004829          540 LLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINE  619 (728)
Q Consensus       540 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  619 (728)
                      .|++++...+..       ......+|.++...|++++|...+++++..        .+....++..+|.++...|++++
T Consensus         5 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~   69 (135)
T TIGR02552         5 TLKDLLGLDSEQ-------LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEE   69 (135)
T ss_pred             hHHHHHcCChhh-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHH
Confidence            455555543332       456788999999999999999999999886        23346789999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          620 AADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       620 A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      |+.+|++++.+        +|.....++.+|.+|...|++++|+.+|++++++.
T Consensus        70 A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        70 AIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            99999999998        77788899999999999999999999999999864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.92  E-value=1.4e-08  Score=90.17  Aligned_cols=108  Identities=16%  Similarity=0.146  Sum_probs=96.9

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK  676 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~  676 (728)
                      ++........+|.++...|++++|...|++++.+        +|....++..+|.++..+|++++|+.+|++++.+    
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----   80 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL----   80 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            4445677899999999999999999999999998        7778889999999999999999999999999884    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          677 LGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       677 ~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                          +|.....++.+|.++...|++++|+ ..++.+++.+|....
T Consensus        81 ----~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~  120 (135)
T TIGR02552        81 ----DPDDPRPYFHAAECLLALGEPESAL-KALDLAIEICGENPE  120 (135)
T ss_pred             ----CCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccccch
Confidence                4778889999999999999999999 999999998887543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.89  E-value=1.5e-08  Score=101.17  Aligned_cols=258  Identities=17%  Similarity=0.131  Sum_probs=148.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004829          401 LICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR  480 (728)
Q Consensus       401 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  480 (728)
                      .-++..|+|..++..+..      ..............+.++++.+|+++..+.-...          ...| ...+...
T Consensus         9 rn~fy~G~Y~~~i~e~~~------~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~-~l~av~~   71 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEASL------KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSP-ELQAVRL   71 (290)
T ss_dssp             HHHHCTT-HHHHCHHHHC------HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSC-CCHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhc------cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCCh-hHHHHHH
Confidence            456678888888865541      1123344556677788888889987765533321          1122 2333444


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829          481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG  560 (728)
Q Consensus       481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  560 (728)
                      ++..+...++.+.++..++.   ....    .............|.++...|++++|+..+.+.          .  ...
T Consensus        72 la~y~~~~~~~e~~l~~l~~---~~~~----~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----------~--~lE  132 (290)
T PF04733_consen   72 LAEYLSSPSDKESALEELKE---LLAD----QAGESNEIVQLLAATILFHEGDYEEALKLLHKG----------G--SLE  132 (290)
T ss_dssp             HHHHHCTSTTHHCHHHHHHH---CCCT----S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----------T--CHH
T ss_pred             HHHHHhCccchHHHHHHHHH---HHHh----ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----------C--ccc
Confidence            55544433344444333322   1111    111112334555667777788888888777542          0  023


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCC
Q 004829          561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY--TINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                      .......+|+..++++.|.+.++.+.++    .+  +.  ..+....+++.+..|  ++.+|...|++..+.        
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~e--D~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--------  196 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNMQQI----DE--DS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--------  196 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHCC----SC--CH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC--cH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------
Confidence            4445677888888888888777665432    21  11  122222333444444  578888888875443        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                      .+.....+..+|.++..+|++++|...+++++.        .+|...+++.+++.+...+|+..++..+++..+...+|.
T Consensus       197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN  268 (290)
T ss_dssp             S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence            334456778888888888888888888888775        446677788888888888888866555788877776664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.88  E-value=4.2e-07  Score=86.54  Aligned_cols=183  Identities=16%  Similarity=0.216  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE  345 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  345 (728)
                      +..++..|..++..|+|.+|+..|++++...     +..+. ...+.+.+|.+++..|++++|+..+++.+...+.    
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----
Confidence            5568889999999999999999999999876     33222 2346899999999999999999999999998644    


Q ss_pred             CChHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          346 TDHRVGETCRYVAEAHVQSL-----------QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALE  414 (728)
Q Consensus       346 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~  414 (728)
                       ++....+++.+|.+++...           ...+|+..|+..+..+|+..-                      ..+|..
T Consensus        75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y----------------------~~~A~~  131 (203)
T PF13525_consen   75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY----------------------AEEAKK  131 (203)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT----------------------HHHHHH
T ss_pred             -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH----------------------HHHHHH
Confidence             6788889999999877653           234677777777777765532                      112222


Q ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHH
Q 004829          415 HYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDS  494 (728)
Q Consensus       415 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  494 (728)
                      .+..+.         ..++.--..+|..|...|.|..|+..++.+++.+.     +.+....++..++..|..+|..+.|
T Consensus       132 ~l~~l~---------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  132 RLAELR---------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHH---------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHH---------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHhCChHHH
Confidence            222211         22334456688899999999999999999888744     3566778889999999999988754


Q ss_pred             H
Q 004829          495 K  495 (728)
Q Consensus       495 ~  495 (728)
                      .
T Consensus       198 ~  198 (203)
T PF13525_consen  198 D  198 (203)
T ss_dssp             H
T ss_pred             H
Confidence            3

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.87  E-value=2.5e-05  Score=82.48  Aligned_cols=224  Identities=18%  Similarity=0.226  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          434 SIDCSIGDAYLSLARFDEAIFSYHK------ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       434 ~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      ..|-.-|.+|.+..++++|+++|++      ++++.+-.+   .......-...|.-+...|+++.|+.+|-++-.+.  
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~--  736 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI--  736 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH--
Confidence            3455667777778888888888764      455544432   22333344456777788889998888887654331  


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS  587 (728)
Q Consensus       508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  587 (728)
                                     .-........++.+|+..++...        +.......|-.++.-|...|+|+-|.++|.++-.
T Consensus       737 ---------------kaieaai~akew~kai~ildniq--------dqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~  793 (1636)
T KOG3616|consen  737 ---------------KAIEAAIGAKEWKKAISILDNIQ--------DQKTASGYYGEIADHYANKGDFEIAEELFTEADL  793 (1636)
T ss_pred             ---------------HHHHHHhhhhhhhhhHhHHHHhh--------hhccccccchHHHHHhccchhHHHHHHHHHhcch
Confidence                           11122233445555555444322        1122223455677778888888888887776532


Q ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH-
Q 004829          588 KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEIL-  666 (728)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~-  666 (728)
                      .                ..--..|-+.|++++|..+-.++.       +  .......|..-+.-+...|+|.+|.++| 
T Consensus       794 ~----------------~dai~my~k~~kw~da~kla~e~~-------~--~e~t~~~yiakaedldehgkf~eaeqlyi  848 (1636)
T KOG3616|consen  794 F----------------KDAIDMYGKAGKWEDAFKLAEECH-------G--PEATISLYIAKAEDLDEHGKFAEAEQLYI  848 (1636)
T ss_pred             h----------------HHHHHHHhccccHHHHHHHHHHhc-------C--chhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence            1                111234556677777766555432       2  1233344555555555566655555444 


Q ss_pred             -----HHHHHHHHH---------HcCCCChHH-HHHHHHHHHHHHHhCChhHHHHHHHH
Q 004829          667 -----EYVVGMREE---------KLGTANPDV-EDEKRRLAELLKEAGRVRNRKSRSLV  710 (728)
Q Consensus       667 -----~~al~~~~~---------~~~~~~p~~-~~~~~~La~~~~~~g~~~~A~~~~l~  710 (728)
                           .+++.++++         +.+..||+. .+.+..++.-|...|+...|...+++
T Consensus       849 ti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle  907 (1636)
T KOG3616|consen  849 TIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE  907 (1636)
T ss_pred             EccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence                 233443332         223455654 56788999999999999999855554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.87  E-value=6.1e-08  Score=84.68  Aligned_cols=105  Identities=12%  Similarity=0.098  Sum_probs=92.8

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829          430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN  509 (728)
Q Consensus       430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  509 (728)
                      ++.....+.+|..++..|++++|...|+-...+        +|.....+++||.++..+|+|.+|+..|.+++.+.    
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~----   99 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK----   99 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----
Confidence            556677889999999999999999999999888        89999999999999999999999999999999883    


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                           ++.+..+.++|.+++..|+.+.|...|+.++......
T Consensus       100 -----~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        100 -----IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             -----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence                 3456788999999999999999999999999887433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.86  E-value=3.8e-08  Score=90.96  Aligned_cols=121  Identities=15%  Similarity=0.038  Sum_probs=95.8

Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      ....+.+++.+|.++...|++++|+..|++++.+..      ++.....++.++|.++...|++++|+.+|++++.+.+.
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            445678889999999999999999999999998842      23445678999999999999999999999999988655


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS  597 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  597 (728)
                      .......++.++..+|..+...|++++|+..+.+++..++......+
T Consensus       105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p  151 (168)
T CHL00033        105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP  151 (168)
T ss_pred             cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence            43222334445555555556999999999999999988877654444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.86  E-value=8.9e-07  Score=86.33  Aligned_cols=189  Identities=12%  Similarity=0.066  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG  511 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  511 (728)
                      ....++..|..+...|++++|+..|++++..+.     ..+....+.+.+|.+|+..+++++|+..+++.++....    
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-----~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~----  101 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-----FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT----  101 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC----
Confidence            345677889999999999999999999988732     34566677899999999999999999999999999644    


Q ss_pred             CCcHHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC
Q 004829          512 IPSEEIASGLIDIAAIYQSMN---------------E---LEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG  573 (728)
Q Consensus       512 ~~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g  573 (728)
                        ++....+++.+|.++...+               +   ..+|+..|++.++.+|+..    .                
T Consensus       102 --~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~----y----------------  159 (243)
T PRK10866        102 --HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ----Y----------------  159 (243)
T ss_pred             --CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh----h----------------
Confidence              6678888999998764443               2   2456677777777666541    0                


Q ss_pred             CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004829          574 NYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY  653 (728)
Q Consensus       574 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~  653 (728)
                       ..+|...+......           .+.--..+|..|.+.|.|..|+.-++.+++-+     |+.+...++++.++..|
T Consensus       160 -a~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay  222 (243)
T PRK10866        160 -TTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY  222 (243)
T ss_pred             -HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence             12222222222111           23344567899999999999999999998874     44677888999999999


Q ss_pred             HHcCChHHHHHHHHH
Q 004829          654 DAMGRIDDAIEILEY  668 (728)
Q Consensus       654 ~~~g~~~~A~~~~~~  668 (728)
                      ..+|..++|..+...
T Consensus       223 ~~lg~~~~a~~~~~~  237 (243)
T PRK10866        223 RQLQLNAQADKVAKI  237 (243)
T ss_pred             HHcCChHHHHHHHHH
Confidence            999999999876643

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=4.4e-06  Score=76.96  Aligned_cols=224  Identities=13%  Similarity=0.048  Sum_probs=168.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004829          390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE  469 (728)
Q Consensus       390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  469 (728)
                      ...+..|...+.+|....+|++|...+.+|....+.+......+..+-..+.+...+..+.++..+|++|..++.+..  
T Consensus        28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G--  105 (308)
T KOG1585|consen   28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG--  105 (308)
T ss_pred             hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--
Confidence            344555666777888889999999999999988888877788888999999999999999999999999999998873  


Q ss_pred             CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829          470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG  549 (728)
Q Consensus       470 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  549 (728)
                       .|+.+..-...|--....-++++|+.+|++++.+.+..   .........+...++++.+..++++|-..+.+-..+..
T Consensus       106 -spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~---dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~  181 (308)
T KOG1585|consen  106 -SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED---DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD  181 (308)
T ss_pred             -CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH
Confidence             55555555555555667789999999999999998773   33445667788889999999999999988887666655


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829          550 KTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFE  625 (728)
Q Consensus       550 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  625 (728)
                      .. .........+.....+|+...+|..|..+++...++    +....+....++.+|-..| ..|+.++....+.
T Consensus       182 ~~-~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  182 KC-DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HH-hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            44 333334445555566777778999999999887665    2222333455666655444 4677777665544

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.83  E-value=2.7e-06  Score=96.41  Aligned_cols=398  Identities=17%  Similarity=0.128  Sum_probs=268.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhH----HHHHH
Q 004829          238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAK----FAGCM  313 (728)
Q Consensus       238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~----~~~~~  313 (728)
                      ++.+|..+=+.++.+.+... +...|+....+..++..++....+++|+.+-.+++.+.-...+..++...    ...++
T Consensus       680 ~~~~a~~~~qk~~d~~Erll-~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~  758 (1236)
T KOG1839|consen  680 DFNQAAIQQQKVLDINERLL-GLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALM  758 (1236)
T ss_pred             ccchhhhhhHhHHHHHHHHh-ccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHH
Confidence            66778777788888777665 45567777777777766777777899998888888776544444444321    11233


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHc---C--
Q 004829          314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ---SLQFDEAEKICQMALDIHREN---T--  385 (728)
Q Consensus       314 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~---~--  385 (728)
                      .++.       -+-+++.+..+++...+.++.++-..+.. ..+..++-.   ..+...+....-++.+.....   +  
T Consensus       759 ~l~~-------~ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~  830 (1236)
T KOG1839|consen  759 ELGV-------GEIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTP  830 (1236)
T ss_pred             HHHH-------HHHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCC
Confidence            3332       26667777777777666666555444444 222222221   222222221111111110000   0  


Q ss_pred             CCC-------cHH-----------------HHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHHHH-----hc-C-----
Q 004829          386 SPA-------SIE-----------------EAADRRLMGLICDSKGDYEAALEH---YVLASMSMA-----AN-G-----  427 (728)
Q Consensus       386 ~~~-------~~~-----------------~a~~~~~lg~~~~~~g~~~~A~~~---~~~al~~~~-----~~-~-----  427 (728)
                      .+.       ++.                 .+.....+..+....|...-+...   +..-+....     .. .     
T Consensus       831 k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f  910 (1236)
T KOG1839|consen  831 KPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEF  910 (1236)
T ss_pred             CcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCC
Confidence            000       000                 000001112222222222111111   111111110     00 0     


Q ss_pred             --------------CCh--hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCh
Q 004829          428 --------------HEL--DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKL  491 (728)
Q Consensus       428 --------------~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  491 (728)
                                    ..|  ..+.-....|......|.+.+|.+ .-+++.++...++.-+|..+..|..|+.++...|++
T Consensus       911 ~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~  989 (1236)
T KOG1839|consen  911 NDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDN  989 (1236)
T ss_pred             CcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcch
Confidence                          001  123344566777778889999999 888999998888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC-CCcHHHHHHHHHHHHH
Q 004829          492 RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ-QSTIAGIEAQMGVMYY  570 (728)
Q Consensus       492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~la~~~~  570 (728)
                      ++|+.+-.++.-+.++.. +.+++.....+.+++...+..+....|+..+.+++.+..-..+. .+..+.+..+++.++.
T Consensus       990 ~~Ai~~~~ka~ii~eR~~-g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~ 1068 (1236)
T KOG1839|consen  990 QEAIAQQRKACIISERVL-GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL 1068 (1236)
T ss_pred             HHHHHhcccceeeechhc-cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh
Confidence            999999999998888766 77899999999999999999999999999999999887765555 4566777789999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829          571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY  646 (728)
Q Consensus       571 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  646 (728)
                      ..++++.|+.+++.|+..............+..+..+++++...+++..|+...+....++...++++|.......
T Consensus      1069 ~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~ 1144 (1236)
T KOG1839|consen 1069 GVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESS 1144 (1236)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhH
Confidence            9999999999999999988888777677788899999999999999999999999999999999999887765543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=4.1e-06  Score=77.18  Aligned_cols=224  Identities=15%  Similarity=0.144  Sum_probs=165.5

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829          430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN  509 (728)
Q Consensus       430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  509 (728)
                      ...+..|..-+.+|....+|++|...+.+|.+.++..  ......+.++-..+.+...+..+.++..+|+++..++.+.+
T Consensus        28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G  105 (308)
T KOG1585|consen   28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG  105 (308)
T ss_pred             hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence            3445556666778888999999999999999877654  22445677888889999999999999999999999998865


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF  589 (728)
Q Consensus       510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  589 (728)
                          .++.+..-...+--....-++++|+.+|++++.+.... +....-...+...+.++.+...|.+|-..+.+-..+.
T Consensus       106 ----spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~-dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~  180 (308)
T KOG1585|consen  106 ----SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED-DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA  180 (308)
T ss_pred             ----CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence                34444444444444566778999999999999998876 4444455667788999999999999999888877666


Q ss_pred             HHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004829          590 RTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILE  667 (728)
Q Consensus       590 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~  667 (728)
                      .........  ...+...-.+|+...+|..|..+|+...++    .+-..++...++.+|-..| ..|+.++....+.
T Consensus       181 ~~~~~y~~~--~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  181 DKCDAYNSQ--CKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHhhcccH--HHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            555443232  345555566777778999999999987765    2223566677777776666 4577777665543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.83  E-value=2.9e-06  Score=82.73  Aligned_cols=191  Identities=10%  Similarity=0.071  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004829          474 VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPG  553 (728)
Q Consensus       474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  553 (728)
                      ....++..|..+...|+|++|+..|++++.....      .+....+...+|.+|+..+++++|+..+++.++..|+.+ 
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~-  103 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-  103 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-
Confidence            3455777889999999999999999999998543      466777889999999999999999999999999988764 


Q ss_pred             CCCcHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC
Q 004829          554 QQSTIAGIEAQMGVMYYMTG---------------NY---SDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY  615 (728)
Q Consensus       554 ~~~~~~~~~~~la~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  615 (728)
                         ....+++.+|.++...+               +.   .+|+..|++.++.+..     ...                
T Consensus       104 ---~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-----S~y----------------  159 (243)
T PRK10866        104 ---NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-----SQY----------------  159 (243)
T ss_pred             ---chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-----Chh----------------
Confidence               34567778887764443               11   2344555555544211     111                


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829          616 TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL  695 (728)
Q Consensus       616 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  695 (728)
                       ..+|...+..+..           ..+.--+.+|..|.+.|.+..|+.-++.+++-+     |+.+...+++..+...|
T Consensus       160 -a~~A~~rl~~l~~-----------~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay  222 (243)
T PRK10866        160 -TTDATKRLVFLKD-----------RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY  222 (243)
T ss_pred             -HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence             1233322222222           233344678999999999999999999999866     67788899999999999


Q ss_pred             HHhCChhHHHHHHHHHHH
Q 004829          696 KEAGRVRNRKSRSLVTFL  713 (728)
Q Consensus       696 ~~~g~~~~A~~~~l~~ll  713 (728)
                      ..+|..++|. .....+.
T Consensus       223 ~~lg~~~~a~-~~~~~l~  239 (243)
T PRK10866        223 RQLQLNAQAD-KVAKIIA  239 (243)
T ss_pred             HHcCChHHHH-HHHHHHh
Confidence            9999999999 6665553

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.83  E-value=0.0002  Score=75.99  Aligned_cols=295  Identities=16%  Similarity=0.233  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh-
Q 004829          394 ADRRLMGLICDSKGDYEAALEHYVL------ASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA-  466 (728)
Q Consensus       394 ~~~~~lg~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-  466 (728)
                      ..|-..|.+|.+..++++|+++|.+      ++++.+. .-+..+...-...|.-+...|+++.|+.+|-++-.+.+.. 
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie  740 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE  740 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence            3455667778888888999988765      3333322 2233444555566788888999999998886554332211 


Q ss_pred             --cC--------------CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH
Q 004829          467 --KG--------------ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS  530 (728)
Q Consensus       467 --~~--------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~  530 (728)
                        .+              .+.......|-.++.-|...|+|+.|.++|.++-..                 ..-...|-+
T Consensus       741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~-----------------~dai~my~k  803 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF-----------------KDAIDMYGK  803 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh-----------------HHHHHHHhc
Confidence              00              011111123344566677777777777776654211                 122345666


Q ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhCCC---------
Q 004829          531 MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTL------KSAISKFRTSGEK---------  595 (728)
Q Consensus       531 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~---------  595 (728)
                      .|++++|.++-.++.       + +......|...+.-+-..|+|.+|.++|      .++++++.+.+..         
T Consensus       804 ~~kw~da~kla~e~~-------~-~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  804 AGKWEDAFKLAEECH-------G-PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEK  875 (1636)
T ss_pred             cccHHHHHHHHHHhc-------C-chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHH
Confidence            677777666555432       1 2223344555566667777777777665      3555555544332         


Q ss_pred             -CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------HHHHhcCCCChhHHHHHH--------
Q 004829          596 -KSALFGIALNQMGLACVQRYTINEAADLFEEART-------------------ILEKEYGPYHHDTLGVYS--------  647 (728)
Q Consensus       596 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------------------~~~~~~~~~~~~~~~~~~--------  647 (728)
                       ++.........+|.-|...|+...|...|-++-+                   +.+...|.+..... ++.        
T Consensus       876 ~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v-~flwaksiggd  954 (1636)
T KOG3616|consen  876 HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHV-AFLWAKSIGGD  954 (1636)
T ss_pred             hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHH-HHHHHHhhCcH
Confidence             2223445667778888888888887777655433                   22222222111110 110        


Q ss_pred             HHHHHHHHcCChHHHHHHH------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829          648 NLAGTYDAMGRIDDAIEIL------EYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       648 ~La~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      .-..++.+.|-.+.|+.+.      +-+..+.+-..   .......+..++..+...|++++|. +.+-..++.+..+
T Consensus       955 aavkllnk~gll~~~id~a~d~~afd~afdlari~~---k~k~~~vhlk~a~~ledegk~edas-khyveaiklntyn 1028 (1636)
T KOG3616|consen  955 AAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA---KDKMGEVHLKLAMFLEDEGKFEDAS-KHYVEAIKLNTYN 1028 (1636)
T ss_pred             HHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh---hccCccchhHHhhhhhhccchhhhh-HhhHHHhhccccc
Confidence            0112344455555555442      22333322111   1234466788999999999999998 5544555555443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.81  E-value=4.5e-08  Score=97.79  Aligned_cols=262  Identities=16%  Similarity=0.125  Sum_probs=162.0

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004829          360 AHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSI  439 (728)
Q Consensus       360 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  439 (728)
                      -++..|+|..++.-++  +  ..  .  ...........+.+++..+|+++..+.-+..       .. .|. ..+...+
T Consensus        10 n~fy~G~Y~~~i~e~~--~--~~--~--~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~~-~~~-l~av~~l   72 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS--L--KS--F--SPENKLERDFYQYRSYIALGQYDSVLSEIKK-------SS-SPE-LQAVRLL   72 (290)
T ss_dssp             HHHCTT-HHHHCHHHH--C--HT--S--TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------TS-SCC-CHHHHHH
T ss_pred             HHHHhhhHHHHHHHhh--c--cC--C--CchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------CC-Chh-HHHHHHH
Confidence            4567899988886555  1  11  1  1123344567788899999998876544321       12 222 2344555


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHH
Q 004829          440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIAS  519 (728)
Q Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  519 (728)
                      +..+...++.+.++..++..+.-      .............|.++...|++++|+..+.+.              ...+
T Consensus        73 a~y~~~~~~~e~~l~~l~~~~~~------~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------------~~lE  132 (290)
T PF04733_consen   73 AEYLSSPSDKESALEELKELLAD------QAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------------GSLE  132 (290)
T ss_dssp             HHHHCTSTTHHCHHHHHHHCCCT------S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------------TCHH
T ss_pred             HHHHhCccchHHHHHHHHHHHHh------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------------Cccc
Confidence            55554434444444433322211      112223445666778888899999998887653              1234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCc
Q 004829          520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG--NYSDSYNTLKSAISKFRTSGEKKS  597 (728)
Q Consensus       520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~  597 (728)
                      .......+|..+++++.|.+.++.+.++     ..+..  .+....+++.+..|  ++.+|...|++..+.+        
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--------  197 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNMQQI-----DEDSI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--------  197 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCHH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcHH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--------
Confidence            5556778999999999999888776433     22222  22223344445555  6889999988864321        


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHH
Q 004829          598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI-DDAIEILEYVVGMREEK  676 (728)
Q Consensus       598 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~-~~A~~~~~~al~~~~~~  676 (728)
                      .....+++.++.+++.+|+|++|...+++++..        +|....++.+++.+...+|+. +.+.+++.+....    
T Consensus       198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~----  265 (290)
T PF04733_consen  198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS----  265 (290)
T ss_dssp             --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH----
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh----
Confidence            123567899999999999999999999998876        677778999999999999998 5566676665543    


Q ss_pred             cCCCChHHHH
Q 004829          677 LGTANPDVED  686 (728)
Q Consensus       677 ~~~~~p~~~~  686 (728)
                       .|.||...+
T Consensus       266 -~p~h~~~~~  274 (290)
T PF04733_consen  266 -NPNHPLVKD  274 (290)
T ss_dssp             -TTTSHHHHH
T ss_pred             -CCCChHHHH
Confidence             356765543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.81  E-value=5.6e-06  Score=83.55  Aligned_cols=407  Identities=13%  Similarity=0.088  Sum_probs=244.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH---
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV---  342 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---  342 (728)
                      ...+++.|-+|+...++..|++.........+.....    ......+..-..+....+.++|+.++.-.-.+....   
T Consensus       100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~----~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~  175 (696)
T KOG2471|consen  100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESS----SAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK  175 (696)
T ss_pred             hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            4567888999999999999998877766543211111    112234455566666777888877655433322211   


Q ss_pred             -cCC----------CChHHH-----------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 004829          343 -LGE----------TDHRVG-----------ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMG  400 (728)
Q Consensus       343 -~~~----------~~~~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg  400 (728)
                       .|.          -.|..+           .+...-...|.+..+...+..-.+.++.+....        +..+...+
T Consensus       176 ~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s--------~~~l~LKs  247 (696)
T KOG2471|consen  176 LVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDS--------SMALLLKS  247 (696)
T ss_pred             ccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCC--------cHHHHHHH
Confidence             111          111111           112222233444445555544444444443211        23466778


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcC--CChh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHhcCCC-----
Q 004829          401 LICDSKGDYEAALEHYVLASMSMAANG--HELD--VASIDCSIGDAYLSLARFDEAIFSYHKALT-AFKSAKGEN-----  470 (728)
Q Consensus       401 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~-----  470 (728)
                      ..++..|+|.+|.+.+...- +....+  ..|.  ....++++|.+++.+|.|.-+..+|.+|+. .+.+.-.+-     
T Consensus       248 q~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~  326 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT  326 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            89999999999998875431 111111  1122  345578999999999999999999999996 444432211     


Q ss_pred             ----CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC-------------
Q 004829          471 ----HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE-------------  533 (728)
Q Consensus       471 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------  533 (728)
                          ......++++.|..|...|++-.|.++|.++...+..         .+..|..++.++....+             
T Consensus       327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~---------nPrlWLRlAEcCima~~~~l~ee~~~s~s~  397 (696)
T KOG2471|consen  327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR---------NPRLWLRLAECCIMALQKGLLEEGNSSLSR  397 (696)
T ss_pred             eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHHhhhhhhhhccCCccc
Confidence                1234578899999999999999999999999999866         34567777776643210             


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHHhcC--------------------------
Q 004829          534 ------------------------------------LEQAVKLLNKALKIYGKT--------------------------  551 (728)
Q Consensus       534 ------------------------------------~~~A~~~~~~al~~~~~~--------------------------  551 (728)
                                                          .+-|.-+++.++-+.++.                          
T Consensus       398 ~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~  477 (696)
T KOG2471|consen  398 SEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGN  477 (696)
T ss_pred             ccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCC
Confidence                                                122444455555443111                          


Q ss_pred             --------CCC--------CC--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004829          552 --------PGQ--------QS--------TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM  607 (728)
Q Consensus       552 --------~~~--------~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  607 (728)
                              .++        .+        ....++...+.+-+.+|+.-.|+....+.++..         ....++..|
T Consensus       478 ~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~---------~lS~~~kfL  548 (696)
T KOG2471|consen  478 TTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLA---------DLSKIYKFL  548 (696)
T ss_pred             CCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhh---------hhhhHHHHH
Confidence                    000        00        134456677888889999999999998888762         233444444


Q ss_pred             H-----HHHHHcCCHHHHHHHHHHHH------H------HHHHh------cC---CC-------Chh--HHHHHHHHHHH
Q 004829          608 G-----LACVQRYTINEAADLFEEAR------T------ILEKE------YG---PY-------HHD--TLGVYSNLAGT  652 (728)
Q Consensus       608 a-----~~~~~~g~~~~A~~~~~~al------~------~~~~~------~~---~~-------~~~--~~~~~~~La~~  652 (728)
                      |     .++..+.+..+|..++.--+      .      -+..-      ..   ..       .++  ....+++||.+
T Consensus       549 GHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a  628 (696)
T KOG2471|consen  549 GHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAA  628 (696)
T ss_pred             HHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHH
Confidence            4     44555677777777665411      0      01110      00   01       111  12367899999


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004829          653 YDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLV  710 (728)
Q Consensus       653 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~  710 (728)
                      |..+|++++|..++..|..+..+.   . |  ..+...-..+-...|+...|. ..++
T Consensus       629 ~alq~~~dqAk~ll~~aatl~hs~---v-~--~~A~~lavyidL~~G~~q~al-~~lk  679 (696)
T KOG2471|consen  629 LALQGHHDQAKSLLTHAATLLHSL---V-N--VQATVLAVYIDLMLGRSQDAL-ARLK  679 (696)
T ss_pred             HHHhcccHHHHHHHHHHHHhhhcc---c-c--HHHHHHHHHHHHhcCCCcchH-HHHH
Confidence            999999999999999999876321   1 1  222222333556789999998 4443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.80  E-value=0.0002  Score=78.52  Aligned_cols=339  Identities=10%  Similarity=-0.026  Sum_probs=211.5

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004829          263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV  342 (728)
Q Consensus       263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  342 (728)
                      +.....+..-+..+...|...+|+.+.-.|-+          +......+-..+.-....++..--..+.+..    +.-
T Consensus       344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d----------~~~aa~lle~~~~~L~~~~~lsll~~~~~~l----P~~  409 (894)
T COG2909         344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGD----------PEMAADLLEQLEWQLFNGSELSLLLAWLKAL----PAE  409 (894)
T ss_pred             CchhHHHHHHHHHHHhCCChHHHHHHHHhCCC----------HHHHHHHHHhhhhhhhcccchHHHHHHHHhC----CHH
Confidence            44455666677777788888888876655432          2222333444555555555544322222211    000


Q ss_pred             cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          343 LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP-ASIEEAADRRLMGLICDSKGDYEAALEHYVLASM  421 (728)
Q Consensus       343 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  421 (728)
                      .   -..........++......++.+|..++.++....+..... .....+...-..|.+....|+++.|+++.+.++.
T Consensus       410 ~---l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~  486 (894)
T COG2909         410 L---LASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV  486 (894)
T ss_pred             H---HhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            0   01122334455677778899999999999988776653221 2223344455567888899999999999999887


Q ss_pred             HHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChH--HHHHHHH
Q 004829          422 SMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLR--DSKSYCE  499 (728)
Q Consensus       422 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~  499 (728)
                      ....... ...+.++..+|.+..-.|++++|..+...+.++.+..  +.......+....+.++..+|+..  +....+.
T Consensus       487 ~L~~~~~-~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~  563 (894)
T COG2909         487 QLPEAAY-RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQSEILEAQGQVARAEQEKAFN  563 (894)
T ss_pred             hcccccc-hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            6544332 2345678899999999999999999999999998876  234555667777789999999432  3333333


Q ss_pred             HHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 004829          500 NALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSY  579 (728)
Q Consensus       500 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  579 (728)
                      ..-......  ...+.....++..+...+.+   ++.+..-....+.+.............++..|+.+++..|++++|.
T Consensus       564 ~~~~q~l~q--~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~  638 (894)
T COG2909         564 LIREQHLEQ--KPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL  638 (894)
T ss_pred             HHHHHHhhh--cccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence            222221110  01122233334444444443   6777766667766655443333333444568999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          580 NTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA  627 (728)
Q Consensus       580 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  627 (728)
                      ..+.+....+.... .+....+.++.........+|++++|.....+.
T Consensus       639 ~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         639 AQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            99999988876654 333333444444455666789999998887773

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.80  E-value=5.2e-07  Score=83.66  Aligned_cols=115  Identities=15%  Similarity=0.200  Sum_probs=92.6

Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004829          556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEY  635 (728)
Q Consensus       556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  635 (728)
                      ...+..++.+|..+...|++++|+.+|++++.....     ......++..+|.++...|++++|+.+|++++.+     
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----  101 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-----  101 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            344667889999999999999999999999987322     2223578999999999999999999999999998     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHcCCCChH
Q 004829          636 GPYHHDTLGVYSNLAGTYDAMGR-------IDDAIEILEYVVGMREEKLGTANPD  683 (728)
Q Consensus       636 ~~~~~~~~~~~~~La~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~p~  683 (728)
                         +|.....+..+|.+|...|+       ++.|+..++++++.+++.+..++.+
T Consensus       102 ---~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        102 ---NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             ---CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence               77777888888999887655       6777777777777777766544443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.75  E-value=9.7e-08  Score=99.12  Aligned_cols=113  Identities=11%  Similarity=0.031  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829          562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD  641 (728)
Q Consensus       562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  641 (728)
                      +...|..++..|+|++|+.+|.+++++        .+....++..+|.+|..+|++++|+..+++++.+        .|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            345688899999999999999999987        3344678999999999999999999999999999        888


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829          642 TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA  698 (728)
Q Consensus       642 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  698 (728)
                      ...+++.+|.+|..+|++++|+.+|++++.+.        |....+...++.+...+
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~--------P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA--------PGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999953        55555666666665554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.74  E-value=7.4e-07  Score=79.95  Aligned_cols=134  Identities=21%  Similarity=0.222  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829          223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ  302 (728)
Q Consensus       223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  302 (728)
                      ...+..+...+..+ ++..+...+++.+.-      ....+....+.+.+|.+++..|++++|+..|+.++...     +
T Consensus        12 ~~~y~~~~~~~~~~-~~~~~~~~~~~l~~~------~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~   79 (145)
T PF09976_consen   12 SALYEQALQALQAG-DPAKAEAAAEQLAKD------YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----P   79 (145)
T ss_pred             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----C
Confidence            34555566666675 888887777777664      23335567788899999999999999999999998753     2


Q ss_pred             chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829          303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMAL  378 (728)
Q Consensus       303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  378 (728)
                      +. .....+.+.||.++...|++++|+..++..         ...+....++..+|.+|...|++++|+..|++++
T Consensus        80 d~-~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   80 DP-ELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            22 223446889999999999999999998662         1245666788899999999999999999999874

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.73  E-value=1.8e-07  Score=80.88  Aligned_cols=108  Identities=19%  Similarity=0.162  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004829          602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTAN  681 (728)
Q Consensus       602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  681 (728)
                      .+++.+|..+...|++++|+..|.+++..     .++++....+++.+|.++...|++++|+.+|++++...     +.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            46788999999999999999999999886     22334446788999999999999999999999999854     556


Q ss_pred             hHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829          682 PDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       682 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      +....++..+|.++..+|++++|. ..++.+++..|...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~~~  110 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAK-ATLQQVIKRYPGSS  110 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHH-HHHHHHHHHCcCCh
Confidence            666788999999999999999999 99999999988754

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=5e-06  Score=77.85  Aligned_cols=255  Identities=17%  Similarity=0.124  Sum_probs=146.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004829          401 LICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR  480 (728)
Q Consensus       401 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  480 (728)
                      +-++..|.|..++..-.+..       ..+........+...|..+|.+...+.-...+           ......+...
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~-------~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~-----------~~~~lqAvr~   77 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFS-------SSKTDVELDVYMYRAYLALGQYQIVISEIKEG-----------KATPLQAVRL   77 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhc-------cccchhHHHHHHHHHHHHcccccccccccccc-----------cCChHHHHHH
Confidence            34566777777766544331       11233455566777888888776544332221           1111222333


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829          481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG  560 (728)
Q Consensus       481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  560 (728)
                      ++.....-++.++-+.-+.+-+...       ........+..-|.+|...|++++|+........+            .
T Consensus        78 ~a~~~~~e~~~~~~~~~l~E~~a~~-------~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------------E  138 (299)
T KOG3081|consen   78 LAEYLELESNKKSILASLYELVADS-------TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------------E  138 (299)
T ss_pred             HHHHhhCcchhHHHHHHHHHHHHhh-------ccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------------H
Confidence            3443333333333322222222111       01112233444566777888888888777653222            1


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcC
Q 004829          561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR----YTINEAADLFEEARTILEKEYG  636 (728)
Q Consensus       561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~  636 (728)
                      +...-..++.++.+++-|...++++.++-        .  -.++..||.+|...    +++.+|.-+|++.-+.      
T Consensus       139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~id--------e--d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------  202 (299)
T KOG3081|consen  139 AAALNVQILLKMHRFDLAEKELKKMQQID--------E--DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------  202 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccc--------h--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------
Confidence            22233456677777777777777776651        1  23555566555543    3566666666665443      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829          637 PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN  716 (728)
Q Consensus       637 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~  716 (728)
                        .+.....+...|.|+..+|+|++|...++.++.        ..+..++++.++..+-...|...++..+.+.++...+
T Consensus       203 --~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~  272 (299)
T KOG3081|consen  203 --TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--------KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH  272 (299)
T ss_pred             --cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence              233445677788888888888888888888887        4466677777888888888888888877788777766


Q ss_pred             cc
Q 004829          717 SQ  718 (728)
Q Consensus       717 ~~  718 (728)
                      |+
T Consensus       273 p~  274 (299)
T KOG3081|consen  273 PE  274 (299)
T ss_pred             Cc
Confidence            65

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.72  E-value=3e-07  Score=79.50  Aligned_cols=104  Identities=17%  Similarity=0.186  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYH  639 (728)
Q Consensus       560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  639 (728)
                      .+++.+|..+...|++++|+..|.+++...     ...+....+++.+|.++...|++++|+.+|++++..     .+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence            467889999999999999999999998762     112223568889999999999999999999999987     2334


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      +....++..+|.++..+|++++|+.++++++...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            4456789999999999999999999999999853

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.71  E-value=2e-06  Score=77.14  Aligned_cols=123  Identities=17%  Similarity=0.198  Sum_probs=98.2

Q ss_pred             HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Q 004829          445 SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI  524 (728)
Q Consensus       445 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  524 (728)
                      ..++...+...+++.+.-.     ++.+....+.+.+|.+++..|++++|...|+.++...      .++.....+...+
T Consensus        23 ~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------~d~~l~~~a~l~L   91 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA------PDPELKPLARLRL   91 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------CCHHHHHHHHHHH
Confidence            5788888877777766651     2345567888999999999999999999999999863      2344556788899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          525 AAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAI  586 (728)
Q Consensus       525 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  586 (728)
                      +.++...|++++|+..++..        ........++..+|.+|...|++++|+..|++|+
T Consensus        92 A~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999999999999998651        2233445677789999999999999999999874

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.70  E-value=2.1e-07  Score=96.65  Aligned_cols=113  Identities=17%  Similarity=0.175  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHH
Q 004829          521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALF  600 (728)
Q Consensus       521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  600 (728)
                      +...|..++..|+|++|+.+|.+++++.+..       ..++..+|.+|..+|++++|+..+++++.+        .+..
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~~   69 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-------AELYADRAQANIKLGNFTEAVADANKAIEL--------DPSL   69 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCC
Confidence            4567888999999999999999999986655       568899999999999999999999999998        3445


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~  656 (728)
                      ..+++.+|.+|..+|++++|+..|++++.+        +|....+...++.+...+
T Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         70 AKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999        777677777777775554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.67  E-value=3.1e-07  Score=85.11  Aligned_cols=110  Identities=19%  Similarity=0.259  Sum_probs=85.6

Q ss_pred             CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829          470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG  549 (728)
Q Consensus       470 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  549 (728)
                      ..+..+.+++.+|..+...|++++|+.+|++++.+...      .+....++..+|.++...|++++|+.++++++.+.+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  103 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED------PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP  103 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            35677888999999999999999999999999988432      333567899999999999999999999999999865


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHh
Q 004829          550 KTPGQQSTIAGIEAQMGVMYYMTGN-------YSDSYNTLKSAISKFRTS  592 (728)
Q Consensus       550 ~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~  592 (728)
                      ..       ...+..+|.++...|+       ++.|+..++++++.++..
T Consensus       104 ~~-------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a  146 (172)
T PRK02603        104 KQ-------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQA  146 (172)
T ss_pred             cc-------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHH
Confidence            44       4456677777777655       555555555555554443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=3.1e-07  Score=91.49  Aligned_cols=140  Identities=10%  Similarity=0.141  Sum_probs=117.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004829          563 AQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA-------LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEY  635 (728)
Q Consensus       563 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  635 (728)
                      ...|..|++.|+|..|...|++|+..+.........       ....++.+++.++.++++|.+|+....++|.+     
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----  286 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-----  286 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence            356889999999999999999999987643322211       12357899999999999999999999999999     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829          636 GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS  715 (728)
Q Consensus       636 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~  715 (728)
                         .|....+++..|.++..+|+++.|+..|++++++.        |.+..+...|..+-.+..++.+...+.+..++..
T Consensus       287 ---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  287 ---DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             ---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence               88899999999999999999999999999999964        7778888888888888877777765778887776


Q ss_pred             ccc
Q 004829          716 NSQ  718 (728)
Q Consensus       716 ~~~  718 (728)
                      ...
T Consensus       356 ~~~  358 (397)
T KOG0543|consen  356 LAE  358 (397)
T ss_pred             ccc
Confidence            554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.61  E-value=1.5e-05  Score=90.21  Aligned_cols=258  Identities=12%  Similarity=0.039  Sum_probs=194.4

Q ss_pred             cCCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHH
Q 004829          206 NGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEA  285 (728)
Q Consensus       206 ~~~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  285 (728)
                      ...++|......+|+.+-.|.......+..+ +.++|.+.+++||....-. +...-.+.+.+|.++-..|   |.-+..
T Consensus      1442 esaeDferlvrssPNSSi~WI~YMaf~Lels-EiekAR~iaerAL~tIN~R-EeeEKLNiWiA~lNlEn~y---G~eesl 1516 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELS-EIEKARKIAERALKTINFR-EEEEKLNIWIAYLNLENAY---GTEESL 1516 (1710)
T ss_pred             cCHHHHHHHHhcCCCcchHHHHHHHHHhhhh-hhHHHHHHHHHHhhhCCcc-hhHHHHHHHHHHHhHHHhh---CcHHHH
Confidence            3467888888999999999999998999997 8999999999999864110 0111144556666665555   666778


Q ss_pred             HHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829          286 IPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL  365 (728)
Q Consensus       286 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  365 (728)
                      .+.|++|.+.+.          ...++..|..+|...+++++|.++|+..++-+.        .....|..+|..++.+.
T Consensus      1517 ~kVFeRAcqycd----------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1517 KKVFERACQYCD----------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred             HHHHHHHHHhcc----------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhccc
Confidence            889999887641          123589999999999999999999999998853        45678999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 004829          366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS  445 (728)
Q Consensus       366 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  445 (728)
                      +-+.|..++.+|+...|+..   +   .......|.+-++.|+.+.+...|+..+..      .|.....|.-+...-..
T Consensus      1579 e~~aa~~lL~rAL~~lPk~e---H---v~~IskfAqLEFk~GDaeRGRtlfEgll~a------yPKRtDlW~VYid~eik 1646 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQE---H---VEFISKFAQLEFKYGDAERGRTLFEGLLSA------YPKRTDLWSVYIDMEIK 1646 (1710)
T ss_pred             HHHHHHHHHHHHHhhcchhh---h---HHHHHHHHHHHhhcCCchhhHHHHHHHHhh------CccchhHHHHHHHHHHc
Confidence            99999999999999887732   2   345677889999999999999999887654      56667788888888999


Q ss_pred             hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 004829          446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI-GKLRDSKSYCENALKI  504 (728)
Q Consensus       446 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  504 (728)
                      .|+...+..+|++++.+      .-.+..+..++..-.-|.+. |+-......=.+|.+.
T Consensus      1647 ~~~~~~vR~lfeRvi~l------~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1647 HGDIKYVRDLFERVIEL------KLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred             cCCHHHHHHHHHHHHhc------CCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence            99999999999999987      22455555555444444433 4433333333334433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=8.4e-07  Score=88.46  Aligned_cols=137  Identities=10%  Similarity=0.088  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS--------TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR  590 (728)
Q Consensus       519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  590 (728)
                      ......|..|++.|+|..|...|++|+..+......+.        ....++.+++.+|.++++|.+|+..+.++|.+  
T Consensus       209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--  286 (397)
T KOG0543|consen  209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--  286 (397)
T ss_pred             HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence            34456788999999999999999999998875544332        23456889999999999999999999999988  


Q ss_pred             HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH-HHHHHHH
Q 004829          591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDA-IEILEYV  669 (728)
Q Consensus       591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A-~~~~~~a  669 (728)
                            .+.+..+++..|.++..+|+|+.|+..|++++++        .|....+...|..+-.+...+.+. .++|..+
T Consensus       287 ------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  287 ------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             ------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  4556789999999999999999999999999999        788777878887776655444333 4555555


Q ss_pred             HH
Q 004829          670 VG  671 (728)
Q Consensus       670 l~  671 (728)
                      +.
T Consensus       353 F~  354 (397)
T KOG0543|consen  353 FA  354 (397)
T ss_pred             hh
Confidence            44

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=3.9e-05  Score=70.38  Aligned_cols=197  Identities=13%  Similarity=0.182  Sum_probs=131.8

Q ss_pred             hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 004829          364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAY  443 (728)
Q Consensus       364 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  443 (728)
                      .+.+++|.++|.++-.+++-                      ..++..|=..|.++.......+...+.+..|...+.+|
T Consensus        27 ~~k~eeAadl~~~Aan~ykl----------------------aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy   84 (288)
T KOG1586|consen   27 SNKYEEAAELYERAANMYKL----------------------AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY   84 (288)
T ss_pred             CcchHHHHHHHHHHHHHHHH----------------------HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence            45788888888887665432                      22333444444455444444555566667777777776


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829          444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI-GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI  522 (728)
Q Consensus       444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  522 (728)
                      .+. +..+|+.+++++++++...  +.....+.-+..+|.+|..- .++++|+.+|+++-+.+..-   ......-.++.
T Consensus        85 kk~-~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~l  158 (288)
T KOG1586|consen   85 KKV-DPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCLL  158 (288)
T ss_pred             hcc-ChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHHH
Confidence            554 9999999999999998776  22444556677899999875 89999999999999998652   12233445667


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                      ..+..-...++|.+|+..|++.....-+..-.....-..+..-|.+++-..+.-.+...+++..++
T Consensus       159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL  224 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence            777888889999999999998776544432222223334455677777767766665555544444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=4e-06  Score=85.34  Aligned_cols=152  Identities=13%  Similarity=0.077  Sum_probs=128.0

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829          430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN  509 (728)
Q Consensus       430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  509 (728)
                      +....+++..+..++..|++++|+..++..+..        .|++...+...+.++...++..+|.+.+++++...    
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~----  370 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALALD----  370 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----
Confidence            455668889999999999999999999997776        88888889999999999999999999999999983    


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF  589 (728)
Q Consensus       510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  589 (728)
                           |.......++|..|...|++.+|+..++..+.-.++.       +..|..|+..|..+|+-.+|...        
T Consensus       371 -----P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-------p~~w~~LAqay~~~g~~~~a~~A--------  430 (484)
T COG4783         371 -----PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-------PNGWDLLAQAYAELGNRAEALLA--------  430 (484)
T ss_pred             -----CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHhCchHHHHHH--------
Confidence                 3446778899999999999999999999887665544       46788999999999987766433        


Q ss_pred             HHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          590 RTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       590 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                                       .+..|...|++++|+..+..+.+.
T Consensus       431 -----------------~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         431 -----------------RAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             -----------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence                             355566789999999999988776

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=2e-06  Score=87.47  Aligned_cols=148  Identities=22%  Similarity=0.159  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829          394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPA  473 (728)
Q Consensus       394 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  473 (728)
                      .+++..+..++..|+++.|+..+...+..      .|+....+...+.++...++..+|.+.+++++.+        .|.
T Consensus       307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~P~  372 (484)
T COG4783         307 AAQYGRALQTYLAGQYDEALKLLQPLIAA------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------DPN  372 (484)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCC
Confidence            46788899999999999999999885533      5677788889999999999999999999999998        888


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004829          474 VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPG  553 (728)
Q Consensus       474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  553 (728)
                      ......++|.+|...|++.+|+..++..+.-         .|+.+..|..|+..|..+|+..+|...             
T Consensus       373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~---------~p~dp~~w~~LAqay~~~g~~~~a~~A-------------  430 (484)
T COG4783         373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFN---------DPEDPNGWDLLAQAYAELGNRAEALLA-------------  430 (484)
T ss_pred             ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc---------CCCCchHHHHHHHHHHHhCchHHHHHH-------------
Confidence            8889999999999999999999999988765         455678899999999999998776543             


Q ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          554 QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       554 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                                 .+..|+..|++++|+..+..+.+.
T Consensus       431 -----------~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         431 -----------RAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             -----------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence                       466677889999999999888765

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=1.7e-05  Score=72.64  Aligned_cols=187  Identities=16%  Similarity=0.108  Sum_probs=131.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Q 004829          525 AAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIAL  604 (728)
Q Consensus       525 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  604 (728)
                      |..|...+++..|-..|.++-++..+. +..+..+..|...+.+|.+. +..+|+.+++++++++...+.-.  .-+..+
T Consensus        41 an~yklaK~w~~AG~aflkaA~~h~k~-~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~--~aAk~~  116 (288)
T KOG1586|consen   41 ANMYKLAKNWSAAGDAFLKAADLHLKA-GSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFT--MAAKHH  116 (288)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHH--HHHhhh
Confidence            344444556666666666666666655 55566667777777776554 99999999999999998876532  235567


Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 004829          605 NQMGLACVQR-YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD  683 (728)
Q Consensus       605 ~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~  683 (728)
                      ..+|.+|..- .++++|+.+|+++-+.+...-.  ....-.++...|..-...++|.+|+..|+++....     -+++.
T Consensus       117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees--~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s-----~~n~L  189 (288)
T KOG1586|consen  117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES--VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS-----LDNNL  189 (288)
T ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchH
Confidence            7889998865 8999999999999998754311  22233466677787888999999999999887632     12232


Q ss_pred             ----HHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccccC
Q 004829          684 ----VEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKED  723 (728)
Q Consensus       684 ----~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~~~  723 (728)
                          .-+-++.-|.++...++.-.+. ..++...+.+|...+..
T Consensus       190 LKys~KdyflkAgLChl~~~D~v~a~-~ALeky~~~dP~F~dsR  232 (288)
T KOG1586|consen  190 LKYSAKDYFLKAGLCHLCKADEVNAQ-RALEKYQELDPAFTDSR  232 (288)
T ss_pred             HHhHHHHHHHHHHHHhHhcccHHHHH-HHHHHHHhcCCcccccH
Confidence                2233445566666667877777 88899999998876643

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.58  E-value=2.1e-06  Score=86.48  Aligned_cols=343  Identities=17%  Similarity=0.142  Sum_probs=193.1

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829          220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE  299 (728)
Q Consensus       220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  299 (728)
                      +.+..++-+++.++..| ++.+|.+.....--....-+-.++.......++++|.+++++|.|.-+..+|.+|++-....
T Consensus       238 ~s~~~l~LKsq~eY~~g-n~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q  316 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHG-NHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ  316 (696)
T ss_pred             CCcHHHHHHHHHHHHhc-chHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence            45677888888999997 99999887755421111111112223344556799999999999999999999999622111


Q ss_pred             --cC--Cc-----hhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC---H
Q 004829          300 --DG--QD-----HALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQ---F  367 (728)
Q Consensus       300 --~~--~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~  367 (728)
                        .+  +.     .......++++.|..|...|+.-.|.++|.++...+..        ....|..+|.++....+   .
T Consensus       317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~--------nPrlWLRlAEcCima~~~~l~  388 (696)
T KOG2471|consen  317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR--------NPRLWLRLAECCIMALQKGLL  388 (696)
T ss_pred             HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHHhhhhhh
Confidence              01  00     00113456899999999999999999999999999643        34678888888764321   1


Q ss_pred             HHHHHHHHH--HHH-----------HHHHcCCC---CcHHHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHh-
Q 004829          368 DEAEKICQM--ALD-----------IHRENTSP---ASIEEAADRRLMGLICDSKGDY-----EAALEHYVLASMSMAA-  425 (728)
Q Consensus       368 ~~A~~~~~~--al~-----------~~~~~~~~---~~~~~a~~~~~lg~~~~~~g~~-----~~A~~~~~~al~~~~~-  425 (728)
                      ++......+  ...           +..++...   ........-..++.++.+.+-+     ..--..+.-+...-+. 
T Consensus       389 ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g  468 (696)
T KOG2471|consen  389 EEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEG  468 (696)
T ss_pred             hhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccC
Confidence            111111110  000           00000000   0000000011122222211100     0000000000000000 


Q ss_pred             -----------------cC--------CC--------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829          426 -----------------NG--------HE--------LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP  472 (728)
Q Consensus       426 -----------------~~--------~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  472 (728)
                                       .+        ..        .....++.+.+.+-..+|+.-.|+..-.+.++.         +
T Consensus       469 ~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~---------~  539 (696)
T KOG2471|consen  469 SSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL---------A  539 (696)
T ss_pred             CCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh---------h
Confidence                             00        00        123566778888999999999999999998885         4


Q ss_pred             HHHHHHHHHHHH-----HHHcCChHHHHHHHHHHHH------------HHcC-------C--CCC--------CCcHHHH
Q 004829          473 AVASVFVRLADL-----YHKIGKLRDSKSYCENALK------------IYGK-------P--NHG--------IPSEEIA  518 (728)
Q Consensus       473 ~~~~~~~~la~~-----~~~~g~~~~A~~~~~~al~------------~~~~-------~--~~~--------~~~~~~~  518 (728)
                      ....++..||.+     ++.+.+..+|..++.--+-            -+..       .  ..+        .......
T Consensus       540 ~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~  619 (696)
T KOG2471|consen  540 DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARG  619 (696)
T ss_pred             hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhH
Confidence            444555555554     4567777787776654110            0000       0  000        0112234


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSA  585 (728)
Q Consensus       519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  585 (728)
                      ..+++||.++.-+|++++|..++..|..+........     +......+-+..|+...|...+++.
T Consensus       620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~-----A~~lavyidL~~G~~q~al~~lk~~  681 (696)
T KOG2471|consen  620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQ-----ATVLAVYIDLMLGRSQDALARLKQC  681 (696)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHH-----HHHHHHHHHHhcCCCcchHHHHHhc
Confidence            5678999999999999999999999998887442211     1112223446788888888777665

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.57  E-value=3.6e-07  Score=73.21  Aligned_cols=84  Identities=19%  Similarity=0.230  Sum_probs=68.6

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004829          571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA  650 (728)
Q Consensus       571 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La  650 (728)
                      .+|+++.|+.+++++++....     .+ ....++.+|.+|+..|++++|+.++++ ...        .+......+.+|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a   65 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA   65 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence            368999999999999988422     12 455777899999999999999999999 555        556677888889


Q ss_pred             HHHHHcCChHHHHHHHHHH
Q 004829          651 GTYDAMGRIDDAIEILEYV  669 (728)
Q Consensus       651 ~~~~~~g~~~~A~~~~~~a  669 (728)
                      .++..+|++++|+.+|+++
T Consensus        66 ~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   66 RCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999875

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.57  E-value=0.0007  Score=67.08  Aligned_cols=301  Identities=16%  Similarity=0.070  Sum_probs=205.0

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhH
Q 004829          229 TREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAK  308 (728)
Q Consensus       229 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  308 (728)
                      |....-.| |-..|.....++-+++..     ..+  ..++..-++.-.-.|+|+.|.+-|+-++.-         |...
T Consensus        91 GliAagAG-da~lARkmt~~~~~llss-----Dqe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---------PEtR  153 (531)
T COG3898          91 GLIAAGAG-DASLARKMTARASKLLSS-----DQE--PLIHLLEAQAALLEGDYEDARKKFEAMLDD---------PETR  153 (531)
T ss_pred             hhhhhccC-chHHHHHHHHHHHhhhhc-----cch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcC---------hHHH
Confidence            33344444 778888888777765432     112  233444577778889999999999988753         2222


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC
Q 004829          309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA  388 (728)
Q Consensus       309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  388 (728)
                      ...+..|-.--...|..+.|+.+-+.+...        -|....++...-...+..|+++.|+++.+......--..+..
T Consensus       154 llGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a  225 (531)
T COG3898         154 LLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA  225 (531)
T ss_pred             HHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH
Confidence            222333334445679999999999999888        577777777777788899999999999988765432222111


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004829          389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG  468 (728)
Q Consensus       389 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  468 (728)
                      .-..+..+..-+... ...+...|...-.++.++      .|+.+-.-..-+..++..|+..++-.+++.+.+.      
T Consensus       226 eR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------  292 (531)
T COG3898         226 ERSRAVLLTAKAMSL-LDADPASARDDALEANKL------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA------  292 (531)
T ss_pred             HHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhc------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc------
Confidence            112222222222222 234566777766666544      5666667777889999999999999999988876      


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY  548 (728)
Q Consensus       469 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  548 (728)
                      .-||....       +|....--+.++.-++++-.+..-      .++.......++...+..|++..|...-+.+..+.
T Consensus       293 ePHP~ia~-------lY~~ar~gdta~dRlkRa~~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~  359 (531)
T COG3898         293 EPHPDIAL-------LYVRARSGDTALDRLKRAKKLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA  359 (531)
T ss_pred             CCChHHHH-------HHHHhcCCCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence            44776544       444444445666667776665322      45567788889999999999999998888877765


Q ss_pred             hcCCCCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 004829          549 GKTPGQQSTIAGIEAQMGVMYYMT-GNYSDSYNTLKSAISK  588 (728)
Q Consensus       549 ~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  588 (728)
                      +..        .++..|+.+-... |+-.+....+-+++..
T Consensus       360 pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         360 PRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             chh--------hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            543        4667788887655 9999999999988864

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.56  E-value=4.1e-07  Score=72.90  Aligned_cols=83  Identities=23%  Similarity=0.281  Sum_probs=66.9

Q ss_pred             cCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 004829          279 LGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVA  358 (728)
Q Consensus       279 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  358 (728)
                      .|+|++|+.+|+++++..+     ..+  ....++.+|.+|+..|+|++|+.++++ +..        .+....+.+.+|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~-----~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a   65 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDP-----TNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA   65 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHC-----GTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCC-----CCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence            6899999999999998762     111  223478899999999999999999999 544        455667778889


Q ss_pred             HHHHHhCCHHHHHHHHHHH
Q 004829          359 EAHVQSLQFDEAEKICQMA  377 (728)
Q Consensus       359 ~~~~~~g~~~~A~~~~~~a  377 (728)
                      .++..+|+|++|+.+++++
T Consensus        66 ~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   66 RCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.56  E-value=4.1e-07  Score=69.79  Aligned_cols=64  Identities=27%  Similarity=0.367  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG-RIDDAIEILEYVVGM  672 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g-~~~~A~~~~~~al~~  672 (728)
                      +.++..+|.++...|++++|+.+|++++++        +|....+++++|.+|..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            568899999999999999999999999999        9999999999999999999 799999999999985

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.55  E-value=1.3e-06  Score=85.74  Aligned_cols=108  Identities=14%  Similarity=0.099  Sum_probs=92.1

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829          602 IALNQMGLAC-VQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA  680 (728)
Q Consensus       602 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  680 (728)
                      ...+..|..+ +..|+|++|+..|+..+..+     |+++....+++.+|.+|+..|++++|+..|++++..+     |+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            3445555554 56799999999999999982     3344446799999999999999999999999999865     68


Q ss_pred             ChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829          681 NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       681 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      +|...++++.+|.++..+|++++|+ ..++.+++..|...
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~-~~~~~vi~~yP~s~  251 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAK-AVYQQVIKKYPGTD  251 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCCH
Confidence            8899999999999999999999999 99999999988753

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.53  E-value=1.8e-06  Score=73.22  Aligned_cols=103  Identities=23%  Similarity=0.187  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004829          602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTAN  681 (728)
Q Consensus       602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  681 (728)
                      .+++.+|.++-..|+.++|+.+|++++..     +...+....++..+|..|..+|++++|+..+++++.-+     |+.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence            46788999999999999999999999885     44566677899999999999999999999999998732     222


Q ss_pred             hHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829          682 PDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD  714 (728)
Q Consensus       682 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~  714 (728)
                      +........++.++...|+.++|+...+..+.+
T Consensus        72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   72 ELNAALRVFLALALYNLGRPKEALEWLLEALAE  104 (120)
T ss_pred             cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            336677778899999999999999555555543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.52  E-value=8.4e-07  Score=72.76  Aligned_cols=98  Identities=22%  Similarity=0.329  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP  682 (728)
Q Consensus       603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p  682 (728)
                      +++.+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.+|++++.+        .|
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence            4678899999999999999999999987        5555578899999999999999999999999884        34


Q ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcc
Q 004829          683 DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNS  717 (728)
Q Consensus       683 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~  717 (728)
                      ....++..++.++...|++++|. ..+..+++..|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~   99 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEAL-EAYEKALELDP   99 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHH-HHHHHHHccCC
Confidence            45578999999999999999999 88888877665

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=4.6e-05  Score=71.59  Aligned_cols=249  Identities=12%  Similarity=0.041  Sum_probs=156.0

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004829          360 AHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSI  439 (728)
Q Consensus       360 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  439 (728)
                      -++..|.|..++...++....   .      ........+.+.|..+|++...+.-...+       . .+. ..+...+
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~---~------~~~e~d~y~~raylAlg~~~~~~~eI~~~-------~-~~~-lqAvr~~   78 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSS---K------TDVELDVYMYRAYLALGQYQIVISEIKEG-------K-ATP-LQAVRLL   78 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhccc---c------chhHHHHHHHHHHHHcccccccccccccc-------c-CCh-HHHHHHH
Confidence            355677887776554443211   1      11223556778888888876555433221       1 111 2233444


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHH
Q 004829          440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIAS  519 (728)
Q Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  519 (728)
                      +.....-++.+.-+.-..+-+..      ............-|.+|..-|++++|+........+              .
T Consensus        79 a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------E  138 (299)
T KOG3081|consen   79 AEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------E  138 (299)
T ss_pred             HHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------H
Confidence            44444444444433333332221      112223344555678899999999999988874333              2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCC
Q 004829          520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMT----GNYSDSYNTLKSAISKFRTSGEK  595 (728)
Q Consensus       520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~  595 (728)
                      +...-..++.++.+++-|...++++.++..+.         ++..||..|...    +.+..|.-+|++.-       ++
T Consensus       139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---------tLtQLA~awv~la~ggek~qdAfyifeE~s-------~k  202 (299)
T KOG3081|consen  139 AAALNVQILLKMHRFDLAEKELKKMQQIDEDA---------TLTQLAQAWVKLATGGEKIQDAFYIFEELS-------EK  202 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHhccchhhhhHHHHHHHHh-------cc
Confidence            33334567788888999999988888775443         455666666543    34555555555443       32


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          596 KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       596 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                      .++ ....++.++.+++.+|+|++|...++.++..        ++...+++.++..+-...|...++..-+-.-+.
T Consensus       203 ~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  203 TPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             cCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            233 3578899999999999999999999999987        666777999999999999998887765544443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.50  E-value=5.8e-07  Score=68.94  Aligned_cols=65  Identities=22%  Similarity=0.300  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Q 004829          310 AGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL-QFDEAEKICQMALDIHR  382 (728)
Q Consensus       310 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~  382 (728)
                      ..+..+|.++...|++++|+.+|.+++++        +|....++..+|.+|..+| ++++|+..+++++++.|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45999999999999999999999999999        8999999999999999999 79999999999998753

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.49  E-value=5.3e-06  Score=70.32  Aligned_cols=98  Identities=20%  Similarity=0.098  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829          561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH  640 (728)
Q Consensus       561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  640 (728)
                      +.+.+|.++-..|+.++|+.+|++++..     +........++..+|..+..+|++++|+..+++++.-        +|
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--------~p   69 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--------FP   69 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CC
Confidence            5678999999999999999999999874     2224445679999999999999999999999999875        44


Q ss_pred             h---HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          641 D---TLGVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       641 ~---~~~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                      +   ...+...++.++...|++++|+..+-.++.
T Consensus        70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4   566777889999999999999999988776

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.48  E-value=0.00015  Score=82.44  Aligned_cols=222  Identities=15%  Similarity=0.092  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHc
Q 004829          327 NSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSK  406 (728)
Q Consensus       327 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~  406 (728)
                      +..+.|++.+.-        +|+....|...-..+.+.++.++|.+.+++||....-.....   ...+|..+-++...-
T Consensus      1442 esaeDferlvrs--------sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeE---KLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1442 ESAEDFERLVRS--------SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEE---KLNIWIAYLNLENAY 1510 (1710)
T ss_pred             cCHHHHHHHHhc--------CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHH---HHHHHHHHHhHHHhh
Confidence            334455555544        788888888888889999999999999999997542111111   222333333444445


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829          407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH  486 (728)
Q Consensus       407 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  486 (728)
                      |.-+.-.+.|++|.+.+       +...+|..|..+|...+.+++|.++|+..++-+.        ....+|..+|..++
T Consensus      1511 G~eesl~kVFeRAcqyc-------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYC-------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLL 1575 (1710)
T ss_pred             CcHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHh
Confidence            66677778888887653       2346788899999999999999999999988743        35678899999999


Q ss_pred             HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 004829          487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG  566 (728)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  566 (728)
                      .+.+-+.|...+.+|+....+       ..........|.+-++.|+.+.+..+|+-.+..+|+.       ..+|.-+.
T Consensus      1576 ~~ne~~aa~~lL~rAL~~lPk-------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-------tDlW~VYi 1641 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSLPK-------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-------TDLWSVYI 1641 (1710)
T ss_pred             cccHHHHHHHHHHHHHhhcch-------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-------hhHHHHHH
Confidence            999999999999999998654       2356677788999999999999999999988877665       34566667


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Q 004829          567 VMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       567 ~~~~~~g~~~~A~~~~~~al~~  588 (728)
                      ..-.+.|+.+-+..+|++++.+
T Consensus      1642 d~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             HHHHccCCHHHHHHHHHHHHhc
Confidence            7778889999999999999876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.45  E-value=1.1e-06  Score=72.15  Aligned_cols=97  Identities=29%  Similarity=0.448  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCc
Q 004829          435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPS  514 (728)
Q Consensus       435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  514 (728)
                      +++.+|.++...|++++|+..+++++..        .|....++..+|.++...+++++|+.++++++.....       
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-------   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------
Confidence            4678999999999999999999999887        5555578899999999999999999999999987422       


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY  548 (728)
Q Consensus       515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  548 (728)
                        ...++..+|.++...|++++|..++.+++...
T Consensus        67 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          67 --NAKAYYNLGLAYYKLGKYEEALEAYEKALELD   98 (100)
T ss_pred             --chhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence              23678899999999999999999999887654

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=0.00014  Score=68.81  Aligned_cols=302  Identities=13%  Similarity=0.093  Sum_probs=185.5

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHH
Q 004829          355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVAS  434 (728)
Q Consensus       355 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  434 (728)
                      ..+|.-....+++++|+..|.+.+.-.-...+......-.+...++.+|...|++..--+........+..... +....
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk-~k~~K   85 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK-PKITK   85 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc-hhHHH
Confidence            34566677888999999999988854211111111223345778999999999987766665554444433222 33333


Q ss_pred             HHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCC
Q 004829          435 IDCSIGDAY-LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIP  513 (728)
Q Consensus       435 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  513 (728)
                      +...+-..+ .....++.-+..+...++.+.+..  ........-..+..+++..|+|.+|+......+.-+++..   +
T Consensus        86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D---D  160 (421)
T COG5159          86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD---D  160 (421)
T ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc---C
Confidence            333333222 334567777888888877755431  0111223345678899999999999999999888877743   4


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829          514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG  593 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  593 (728)
                      .+.....+..-..+|....+..++...+..|........-.+...+.+-..-|..++...+|..|..||-++++-+....
T Consensus       161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~  240 (421)
T COG5159         161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLK  240 (421)
T ss_pred             ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccccc
Confidence            56677778888899999999999988888887776665544444555555557778888999999999999998765443


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHH
Q 004829          594 EKKSALFGIALNQMGLACVQRYTINEAADLF--EEARTILEKEYGPYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEYV  669 (728)
Q Consensus       594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--~~al~~~~~~~~~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~a  669 (728)
                      .........-|..|..+..  +..++-...+  ..+++.+       .....+++...+..+..  +.+|..|+.-|..-
T Consensus       241 ~d~kAc~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~~y-------~~r~I~am~avaea~~NRsL~df~~aL~qY~~e  311 (421)
T COG5159         241 MDVKACVSLKYMLLSKIML--NRREEVKAVLRNKNTLKHY-------DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDE  311 (421)
T ss_pred             chHHHHHHHHHHHHHHHHH--hhHHHHHHHHccchhHhhh-------hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence            3222211222333333333  3333322222  2222211       23345566666666643  34667777666654


Q ss_pred             HH
Q 004829          670 VG  671 (728)
Q Consensus       670 l~  671 (728)
                      +.
T Consensus       312 l~  313 (421)
T COG5159         312 LH  313 (421)
T ss_pred             hc
Confidence            43

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.45  E-value=5.9e-06  Score=81.12  Aligned_cols=104  Identities=12%  Similarity=0.089  Sum_probs=87.1

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          560 GIEAQMGVMY-YMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       560 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                      ...+..+..+ +..|+|++|+..|+..+..+..     ......+++++|.+|+..|++++|+..|++++..+     ++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            3445556554 6679999999999999987432     33346789999999999999999999999999873     45


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      ++....+++.+|.++..+|++++|...|+++++.+
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            77789999999999999999999999999999854

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.45  E-value=1.9e-06  Score=82.03  Aligned_cols=105  Identities=21%  Similarity=0.174  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 004829          604 LNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD  683 (728)
Q Consensus       604 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~  683 (728)
                      +++.|.-++..|+|..|...|..-++.     .|+.+....++++||.+++.+|++++|...|..+++-+     |.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence            677788888999999999999999887     35567778899999999999999999999999999854     78899


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829          684 VEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       684 ~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      ..++++.||.+...+|+.++|. ..|+.+++..|..
T Consensus       214 ApdallKlg~~~~~l~~~d~A~-atl~qv~k~YP~t  248 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEAC-ATLQQVIKRYPGT  248 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHCCCC
Confidence            9999999999999999999999 9999999998875

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.44  E-value=1.4e-05  Score=72.40  Aligned_cols=203  Identities=15%  Similarity=0.043  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN  470 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  470 (728)
                      ..+..++..|..|-..|-..-|.--|.+++.+      .|..+.+++.+|..+...|+|+.|.+.|...+++        
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--------  128 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------  128 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--------
Confidence            34556777777888888888888888888766      6888999999999999999999999999999999        


Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHh
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN-KALKIYG  549 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~  549 (728)
                      +|..-.+..+.|..++.-|+|.-|.+.+.+..+..      +.+|... .|..+   -...-++.+|...+. ++.....
T Consensus       129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D------~~DPfR~-LWLYl---~E~k~dP~~A~tnL~qR~~~~d~  198 (297)
T COG4785         129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD------PNDPFRS-LWLYL---NEQKLDPKQAKTNLKQRAEKSDK  198 (297)
T ss_pred             CCcchHHHhccceeeeecCchHhhHHHHHHHHhcC------CCChHHH-HHHHH---HHhhCCHHHHHHHHHHHHHhccH
Confidence            88888999999999999999999998887766552      2233222 12111   122345666665443 3333222


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          550 KTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART  629 (728)
Q Consensus       550 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  629 (728)
                      +.    .....+-+.+       |+..+ ...++++..-.+ ....-......+++.+|..+...|+.++|..+|+-++.
T Consensus       199 e~----WG~~iV~~yL-------gkiS~-e~l~~~~~a~a~-~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         199 EQ----WGWNIVEFYL-------GKISE-ETLMERLKADAT-DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             hh----hhHHHHHHHH-------hhccH-HHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            21    1111112222       22221 122222222211 01111223467899999999999999999999998877


Q ss_pred             H
Q 004829          630 I  630 (728)
Q Consensus       630 ~  630 (728)
                      .
T Consensus       266 n  266 (297)
T COG4785         266 N  266 (297)
T ss_pred             H
Confidence            5

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=0.00014  Score=70.43  Aligned_cols=300  Identities=15%  Similarity=0.128  Sum_probs=191.6

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHH
Q 004829          356 YVAEAHVQSLQFDEAEKICQMALDIHREN--TSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVA  433 (728)
Q Consensus       356 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  433 (728)
                      ..+.......++++++..+...+......  .+...-..-.....+|..+...|+..+-..........+...+. +..+
T Consensus         9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-akaa   87 (411)
T KOG1463|consen    9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKAA   87 (411)
T ss_pred             HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHHH
Confidence            34444555667788888888777642111  11111112235678999999999998877776655443332221 2233


Q ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829          434 SIDCSIGDAYL-SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI  512 (728)
Q Consensus       434 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (728)
                      .....+-..+. .-+..+.-+..+..+++...+..  ........-..|..+|...++|.+|+......+.-.++..   
T Consensus        88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD---  162 (411)
T KOG1463|consen   88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD---  162 (411)
T ss_pred             HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc---
Confidence            33344433333 33455677778888887765531  0111223445788999999999999999999988887753   


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS  592 (728)
Q Consensus       513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  592 (728)
                      +......++..-..+|+...+..+|...+..|.......+-.+...+.+-..-|.++....+|..|..||-+|.+-+...
T Consensus       163 DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~  242 (411)
T KOG1463|consen  163 DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL  242 (411)
T ss_pred             cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccccc
Confidence            45556777777888999999999999999888777666554444555555556778888899999999999999988776


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHH
Q 004829          593 GEKKSALFGIALNQMGLACVQRYTINEAADLFE--EARTILEKEYGPYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEY  668 (728)
Q Consensus       593 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~  668 (728)
                      +.....  ...+-.|-.+-...+..++--.++.  .+++.        ......++...|.++..  +.+|+.|+.-|..
T Consensus       243 ~~~v~A--~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y--------~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~  312 (411)
T KOG1463|consen  243 DDDVKA--LTSLKYMLLCKIMLNLPDDVAALLSAKLALKY--------AGRDIDAMKAVAEAFGNRSLKDFEKALADYKK  312 (411)
T ss_pred             CCcHHH--HHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc--------cCcchHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence            654222  3344444455555666665444443  33332        33345577777777754  3467777777766


Q ss_pred             HHH
Q 004829          669 VVG  671 (728)
Q Consensus       669 al~  671 (728)
                      -+.
T Consensus       313 eL~  315 (411)
T KOG1463|consen  313 ELA  315 (411)
T ss_pred             HHh
Confidence            554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.43  E-value=0.0014  Score=65.06  Aligned_cols=301  Identities=15%  Similarity=0.031  Sum_probs=203.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHH
Q 004829          314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEA  393 (728)
Q Consensus       314 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a  393 (728)
                      ..|.+-.-.|+-..|...-.++-.+..    .+.+.  .++..-++.-...|+++.|.+-|+.++.--+..        .
T Consensus        89 StGliAagAGda~lARkmt~~~~~lls----sDqep--LIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtR--------l  154 (531)
T COG3898          89 STGLIAAGAGDASLARKMTARASKLLS----SDQEP--LIHLLEAQAALLEGDYEDARKKFEAMLDDPETR--------L  154 (531)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHhhhh----ccchH--HHHHHHHHHHHhcCchHHHHHHHHHHhcChHHH--------H
Confidence            345555667888888888887765532    22332  344555677778999999999999887422110        1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829          394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPA  473 (728)
Q Consensus       394 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  473 (728)
                      .-+..|-.-....|+.+.|..|-+.+...      -|....+....-...+..|+++.|+++.+.......-  +.+...
T Consensus       155 lGLRgLyleAqr~GareaAr~yAe~Aa~~------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi--e~~~ae  226 (531)
T COG3898         155 LGLRGLYLEAQRLGAREAARHYAERAAEK------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI--EKDVAE  226 (531)
T ss_pred             HhHHHHHHHHHhcccHHHHHHHHHHHHhh------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh--chhhHH
Confidence            11333333445789999999998888654      3555556666666778899999999999877654221  122222


Q ss_pred             HHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          474 VAS--VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       474 ~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      ...  .+...+.... .-+...|.....+++++.         ++.+-.-..-+..++..|+..++-..++.+.+..+..
T Consensus       227 R~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~---------pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP  296 (531)
T COG3898         227 RSRAVLLTAKAMSLL-DADPASARDDALEANKLA---------PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP  296 (531)
T ss_pred             HHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC---------CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence            222  2222222222 245778888888888883         4455566677889999999999999999887754322


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL  631 (728)
Q Consensus       552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  631 (728)
                                  .++.+|....--+.++.-++++-.+. .+    .++.......++..-+..|++..|..--+.+..+ 
T Consensus       297 ------------~ia~lY~~ar~gdta~dRlkRa~~L~-sl----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-  358 (531)
T COG3898         297 ------------DIALLYVRARSGDTALDRLKRAKKLE-SL----KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE-  358 (531)
T ss_pred             ------------HHHHHHHHhcCCCcHHHHHHHHHHHH-hc----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence                        34556655555566677777765542 22    2334677888899999999999999988888877 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 004829          632 EKEYGPYHHDTLGVYSNLAGTYDAM-GRIDDAIEILEYVVGM  672 (728)
Q Consensus       632 ~~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~~~~~~al~~  672 (728)
                             .|. ..++..|+.+-... |+-.++..++-+++.-
T Consensus       359 -------~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         359 -------APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             -------Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence                   544 34778889888776 9999999999999873

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.42  E-value=7.8e-07  Score=67.27  Aligned_cols=60  Identities=23%  Similarity=0.248  Sum_probs=55.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          606 QMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       606 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      .+|..++..|++++|+..|+++++.        +|....+++.+|.++..+|++++|+.+|++++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            5789999999999999999999998        89999999999999999999999999999999854

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.36  E-value=0.0013  Score=64.08  Aligned_cols=229  Identities=23%  Similarity=0.258  Sum_probs=166.3

Q ss_pred             hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 004829          364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAY  443 (728)
Q Consensus       364 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  443 (728)
                      .+.+..+...+...+......      .........+..+...+++..+...+......    ...+.....+..++..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  105 (291)
T COG0457          36 LGELAEALELLEEALELLPNS------DLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLL  105 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHH
Confidence            345555555555555443321      11234677888888999999999988877643    22456677888889999


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829          444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLAD-LYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI  522 (728)
Q Consensus       444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  522 (728)
                      ...+++..++..+.+++..        .+.........+. ++...|+++.|...+.+++.....      .......+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~  171 (291)
T COG0457         106 EALGKYEEALELLEKALAL--------DPDPDLAEALLALGALYELGDYEEALELYEKALELDPE------LNELAEALL  171 (291)
T ss_pred             HHHhhHHHHHHHHHHHHcC--------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ccchHHHHH
Confidence            9999999999999888875        2222223333344 899999999999999999663210      023455666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q 004829          523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGI  602 (728)
Q Consensus       523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  602 (728)
                      ..+..+...++++.|+..+.+++...+..      ....+..++..+...+++..|...+..++.....        ...
T Consensus       172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~  237 (291)
T COG0457         172 ALGALLEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAE  237 (291)
T ss_pred             HhhhHHHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHH
Confidence            66777888999999999999999887653      2456778899999999999999999999887322        345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          603 ALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       603 ~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      .+..++..+...+.++++...+.+++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         238 ALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6667777777777899999999999887

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.33  E-value=0.00011  Score=66.77  Aligned_cols=230  Identities=15%  Similarity=0.124  Sum_probs=145.0

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      +...+..++..|..|-..|-+.-|.-.|.+++.+        .|..+.+++.||..+...|+|+.|.+.|...+++    
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----  128 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----  128 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence            4456778888999999999999999999999999        9999999999999999999999999999999998    


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 004829          509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYY--MTGNYSDSYNTLKSAI  586 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al  586 (728)
                           +|..-.+..+.|..+..-|++.-|.+-+.+-.+   ..+.++...       -++|.  ..-+..+|...+.+-.
T Consensus       129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~-------LWLYl~E~k~dP~~A~tnL~qR~  193 (297)
T COG4785         129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRS-------LWLYLNEQKLDPKQAKTNLKQRA  193 (297)
T ss_pred             -----CCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHH-------HHHHHHHhhCCHHHHHHHHHHHH
Confidence                 444566788889999999999999887765544   333333211       11222  2335666655443322


Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829          587 SKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEIL  666 (728)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~  666 (728)
                      +.   .... ......+-+.+|.+-.        ...++++....+.. ..-.....++++.||..|...|+.++|..+|
T Consensus       194 ~~---~d~e-~WG~~iV~~yLgkiS~--------e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf  260 (297)
T COG4785         194 EK---SDKE-QWGWNIVEFYLGKISE--------ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALF  260 (297)
T ss_pred             Hh---ccHh-hhhHHHHHHHHhhccH--------HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            11   1100 1111112222232211        12233333221110 0001234568999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChh
Q 004829          667 EYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVR  702 (728)
Q Consensus       667 ~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~  702 (728)
                      +-++.-.--    +.-+..-+.+.|+.+...+.+..
T Consensus       261 KLaiannVy----nfVE~RyA~~EL~~l~q~~~~l~  292 (297)
T COG4785         261 KLAVANNVY----NFVEHRYALLELSLLGQDQDDLA  292 (297)
T ss_pred             HHHHHHhHH----HHHHHHHHHHHHHHhccccchhh
Confidence            988863210    11233344555555555544333

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.33  E-value=0.00014  Score=68.30  Aligned_cols=241  Identities=13%  Similarity=0.120  Sum_probs=170.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 004829          323 GQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLI  402 (728)
Q Consensus       323 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~  402 (728)
                      ...++|+.-|++++++-    |+....-..++..+..+++.+++|++-...|.+.+.........+....  ..+.+-..
T Consensus        41 ~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDy  114 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDY  114 (440)
T ss_pred             cCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHH
Confidence            47899999999999983    3334555678888999999999999999999999987765443332221  12222222


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH----HHHHHH
Q 004829          403 CDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP----AVASVF  478 (728)
Q Consensus       403 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~  478 (728)
                      -....+.+--.++|+..+.......+.......-..+|.+|+..+.|.+-...+++.-.-++...|.++.    ....+|
T Consensus       115 iStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiY  194 (440)
T KOG1464|consen  115 ISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIY  194 (440)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhH
Confidence            2233445555566777776666666666666667789999999999999888888877777666555432    344555


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 004829          479 VRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA-SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST  557 (728)
Q Consensus       479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  557 (728)
                      ..-..+|..+.+-.+-..+|++++.+-..+    .+|... .+.-.=|..+.+.|+|++|..-|-+|.+-+.+.-.....
T Consensus       195 AlEIQmYT~qKnNKkLK~lYeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt  270 (440)
T KOG1464|consen  195 ALEIQMYTEQKNNKKLKALYEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT  270 (440)
T ss_pred             hhHhhhhhhhcccHHHHHHHHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh
Confidence            556678888888888889999999886553    255433 333344677889999999999999998888777333445


Q ss_pred             HHHHHHHHHHHHHHcC
Q 004829          558 IAGIEAQMGVMYYMTG  573 (728)
Q Consensus       558 ~~~~~~~la~~~~~~g  573 (728)
                      .+.-|..||..+.+.|
T Consensus       271 tCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  271 TCLKYLVLANMLMKSG  286 (440)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            5556777788877765

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.28  E-value=0.00067  Score=66.13  Aligned_cols=207  Identities=25%  Similarity=0.345  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829          475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ  554 (728)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  554 (728)
                      .......+..+...+.+..+...+...+...       ..+.....+..++..+...+++..++..+..++......   
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  128 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELE-------LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP---  128 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhh-------hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---
Confidence            3444555555556666666666555555420       022344455555555555566666666555555433222   


Q ss_pred             CCcHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          555 QSTIAGIEAQMGV-MYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       555 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                          .......+. ++...|+++.|...+.+++..    ... .......+...+..+...++++.|+..+.+++..   
T Consensus       129 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---  196 (291)
T COG0457         129 ----DLAEALLALGALYELGDYEEALELYEKALEL----DPE-LNELAEALLALGALLEALGRYEEALELLEKALKL---  196 (291)
T ss_pred             ----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---
Confidence                011112222 555666666666666666331    000 0112333444444455556666666666666655   


Q ss_pred             hcCCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004829          634 EYGPYHHD-TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTF  712 (728)
Q Consensus       634 ~~~~~~~~-~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~l  712 (728)
                           .+. ....+..++..+...+++..|...+..++...        |........++..+...|.++++. ..+...
T Consensus       197 -----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  262 (291)
T COG0457         197 -----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEAL-EALEKA  262 (291)
T ss_pred             -----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHH-HHHHHH
Confidence                 333 34455566666666666666666666666532        223334444555555455555555 555555


Q ss_pred             Hhhcc
Q 004829          713 LDSNS  717 (728)
Q Consensus       713 l~~~~  717 (728)
                      +...+
T Consensus       263 ~~~~~  267 (291)
T COG0457         263 LELDP  267 (291)
T ss_pred             HHhCc
Confidence            44443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.26  E-value=3.8e-06  Score=63.42  Aligned_cols=64  Identities=23%  Similarity=0.283  Sum_probs=58.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829          647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      +.+|..+...|++++|+..|++++.        .+|....+++.+|.++..+|++++|+ ..++.+++..|.+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEAL-AYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCC
Confidence            4689999999999999999999998        67999999999999999999999999 9999999998874

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.25  E-value=0.0024  Score=68.90  Aligned_cols=187  Identities=18%  Similarity=0.094  Sum_probs=132.2

Q ss_pred             HHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH---HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHhcCCCCCCcH
Q 004829          486 HKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA---SGLIDIAAIYQ----SMNELEQAVKLLNKALKIYGKTPGQQSTI  558 (728)
Q Consensus       486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~  558 (728)
                      --.|+-+.++..+.++.+ ...+    ..+...   ..|+.....+.    .....+.|.+.+....+.+|+.       
T Consensus       199 GF~gdR~~GL~~L~~~~~-~~~i----~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s-------  266 (468)
T PF10300_consen  199 GFSGDRELGLRLLWEASK-SENI----RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS-------  266 (468)
T ss_pred             CcCCcHHHHHHHHHHHhc-cCCc----chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc-------
Confidence            346899999999998866 2222    122111   11112111122    2345677888888888877765       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                      +..+...|.++...|+.++|+..|++++..-...    ......+++.+|.++..+.+|++|..+|.+..+..       
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------  335 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------  335 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------
Confidence            5567788999999999999999999988532222    23345789999999999999999999999988751       


Q ss_pred             ChhHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829          639 HHDTLGVYSNLAGTYDAMGRI-------DDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL  695 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  695 (728)
                      .-..+...+..|.++...|+.       ++|..+|.++-.+..+..|...|...-+........
T Consensus       336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~  399 (468)
T PF10300_consen  336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYE  399 (468)
T ss_pred             ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHH
Confidence            223444567788999999999       999999999999888877767776555554444333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=2.2e-05  Score=70.16  Aligned_cols=117  Identities=13%  Similarity=0.054  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829          518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS  597 (728)
Q Consensus       518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  597 (728)
                      +..+..-|.-++..|+|++|..-|..|+.+++..+.  .....+|.+.|.++.+++.++.|+..+.+++++        .
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~  164 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------N  164 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------C
Confidence            344556688899999999999999999999987644  344557789999999999999999999999998        5


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004829          598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT  652 (728)
Q Consensus       598 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~  652 (728)
                      +.+..++...|.+|.+...|++|++.|.+.+++        +|....+...++++
T Consensus       165 pty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  165 PTYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARL  211 (271)
T ss_pred             chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhc
Confidence            667788999999999999999999999999998        77665555444443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=2.8e-05  Score=69.48  Aligned_cols=134  Identities=13%  Similarity=0.209  Sum_probs=106.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004829          563 AQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDT  642 (728)
Q Consensus       563 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  642 (728)
                      -.-|.-++..|+|++|..-|..|+.++.....   .....+|.+.|.++++++.++.|+..+.+++++        .|..
T Consensus        99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pty  167 (271)
T KOG4234|consen   99 KKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPTY  167 (271)
T ss_pred             HHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cchh
Confidence            44578889999999999999999998765443   345678899999999999999999999999999        9999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHH-HHHHHHHhh
Q 004829          643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKS-RSLVTFLDS  715 (728)
Q Consensus       643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~-~~l~~ll~~  715 (728)
                      ..++...|.+|.++..+++|+.-|++.+++        +|....+...++++--......++.. ..+..|-+.
T Consensus       168 ~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdl  233 (271)
T KOG4234|consen  168 EKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLPPKINERNEKMKEEMMEKLKDL  233 (271)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999984        46666666666666555444444332 344555443

>PRK11906 transcriptional regulator; Provisional

Probab=98.23  E-value=4.8e-05  Score=78.18  Aligned_cols=159  Identities=18%  Similarity=0.133  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHhC---CHHHHHHHHHHHH---HHHHHHcCCCChHHHHHHHHHHHHHHHh---------CCHHHHHHHHHH
Q 004829          312 CMQLGDTYAMLG---QIENSILCYTAGL---EIQRQVLGETDHRVGETCRYVAEAHVQS---------LQFDEAEKICQM  376 (728)
Q Consensus       312 ~~~la~~~~~~g---~~~~A~~~~~~al---~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~  376 (728)
                      ++..|......+   ..+.|+.+|.+++   .+        +|..+.+|..+|.+++..         ....+|..+.++
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l--------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r  329 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI--------QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY  329 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC--------CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            566666665554   4567888899998   55        899999999999998765         134566777777


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829          377 ALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSY  456 (728)
Q Consensus       377 al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  456 (728)
                      ++++.+..        +.++..+|.+....++++.|...|++|+.+      .|..+.+++..|.+....|+.++|++.+
T Consensus       330 Aveld~~D--------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i  395 (458)
T PRK11906        330 VSDITTVD--------GKILAIMGLITGLSGQAKVSHILFEQAKIH------STDIASLYYYRALVHFHNEKIEEARICI  395 (458)
T ss_pred             HHhcCCCC--------HHHHHHHHHHHHhhcchhhHHHHHHHHhhc------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77665443        457889999999999999999999999876      7889999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 004829          457 HKALTAFKSAKGENHPAVASVFVRLADL-YHKIGKLRDSKSYCEN  500 (728)
Q Consensus       457 ~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~  500 (728)
                      ++++.+        .|....+-...-.+ .+.....++|+.+|-+
T Consensus       396 ~~alrL--------sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        396 DKSLQL--------EPRRRKAVVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             HHHhcc--------CchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence            999998        66654443332222 3344567777777654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.23  E-value=0.00011  Score=60.83  Aligned_cols=122  Identities=17%  Similarity=0.112  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829          562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD  641 (728)
Q Consensus       562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  641 (728)
                      +..-|..+...|+.+.|++.|.+++.+.        +..+.+|++.+.++.-+|+.++|++.+++++++.    |+....
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trt  113 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRT  113 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchH
Confidence            3456778889999999999999999983        4457899999999999999999999999999984    333444


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH----HHcCCCChHHHHHHHHHHHHH
Q 004829          642 TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE----EKLGTANPDVEDEKRRLAELL  695 (728)
Q Consensus       642 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~p~~~~~~~~La~~~  695 (728)
                      ...++...|.+|..+|+.+.|..-|+.+.++-.    ..+-.-+|-.+-+...|+.+.
T Consensus       114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f  171 (175)
T KOG4555|consen  114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAF  171 (175)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            566888999999999999999999999987521    111123454444444455443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.23  E-value=4e-05  Score=63.44  Aligned_cols=101  Identities=16%  Similarity=0.131  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCc
Q 004829          435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPS  514 (728)
Q Consensus       435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  514 (728)
                      .+-.-|......|+.+.|++.|.+++.+        -|..+.+|++.+..+..+|+.++|+..+++++++..     ...
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-----~~t  111 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELAG-----DQT  111 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-----ccc
Confidence            3455677888999999999999999999        888899999999999999999999999999999963     335


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY  548 (728)
Q Consensus       515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  548 (728)
                      .....++...|.+|..+|+.+.|..-|+.+-++-
T Consensus       112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            5677889999999999999999999999988763

>PRK15331 chaperone protein SicA; Provisional

Probab=98.21  E-value=2e-05  Score=69.44  Aligned_cols=103  Identities=13%  Similarity=0.056  Sum_probs=85.5

Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE  632 (728)
Q Consensus       553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  632 (728)
                      +.........+..|.-++..|++++|...|+-..-.        ++.....+..||.++..+++|++|+..|..|..+  
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--  100 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--  100 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence            334444556678899999999999999999877654        3334567899999999999999999999999887  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          633 KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       633 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                            .++.....+..|.||..+|+.+.|+..|+.++.
T Consensus       101 ------~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        101 ------LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             ------ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence                  444445689999999999999999999999987

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.21  E-value=0.00066  Score=64.35  Aligned_cols=187  Identities=17%  Similarity=0.138  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829          518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS  597 (728)
Q Consensus       518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  597 (728)
                      +..++.-|...+..|++++|...|+......+-.    +....+...++.++++.+++++|+..+++-+.++..     +
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s----~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-----~  104 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS----PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-----H  104 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-----C
Confidence            5668888999999999999999999877544322    223567778999999999999999999999887432     4


Q ss_pred             HHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCC-Ch-----------hHHHHHHHHHHHHHHcCChH
Q 004829          598 ALFGIALNQMGLACVQR-----YTINEAADLFEEARTILEKEYGPY-HH-----------DTLGVYSNLAGTYDAMGRID  660 (728)
Q Consensus       598 ~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~-~~-----------~~~~~~~~La~~~~~~g~~~  660 (728)
                      +....+++..|.+++..     .+...+...+...-++..+-.... .+           ..+.--..+|..|.+.|.+.
T Consensus       105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~  184 (254)
T COG4105         105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV  184 (254)
T ss_pred             CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            44567788888887754     344444444444333333321110 01           11222345788999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829          661 DAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       661 ~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      .|+..++.+++-.     ++.+...+++..|..+|..+|-.++|. +....+..+.|+.
T Consensus       185 AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~-~~~~vl~~N~p~s  237 (254)
T COG4105         185 AAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAK-KTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCC
Confidence            9999999999865     355677889999999999999999998 7766665555543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=2.8e-05  Score=75.18  Aligned_cols=108  Identities=15%  Similarity=0.048  Sum_probs=94.7

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHH
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG---RIDDAIEILEYVVGMR  673 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g---~~~~A~~~~~~al~~~  673 (728)
                      ++..+.-|..||.+|+.+|++..|...|.+|+++        .|+....+..+|.++..+.   ...+|..+|++++.  
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--  221 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--  221 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--
Confidence            3445678999999999999999999999999999        7777888899998887654   46789999999998  


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          674 EEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       674 ~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                            .+|....+++.||..++.+|++.+|+ ..++.+++..|.+..
T Consensus       222 ------~D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~~~~  262 (287)
T COG4235         222 ------LDPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPADDP  262 (287)
T ss_pred             ------cCCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCCCCc
Confidence                  45888999999999999999999999 999999998887654

>PRK11906 transcriptional regulator; Provisional

Probab=98.20  E-value=5.4e-05  Score=77.81  Aligned_cols=165  Identities=15%  Similarity=0.104  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CChhHHHHHHHHh
Q 004829          224 FLLKQTREMISSG--ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSL---------GQYNEAIPVLERS  292 (728)
Q Consensus       224 ~l~~~a~~~~~~g--~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a  292 (728)
                      -++..|...+..+  ...+.|+.+|.+|+..      ..-+|..+.+|..++.|++..         .+..+|.++.++|
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA  330 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNK------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV  330 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            4466777776665  2345677777777732      234577888899999998765         2245677888888


Q ss_pred             hhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Q 004829          293 VEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEK  372 (728)
Q Consensus       293 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  372 (728)
                      +++.     +.++.    ++..+|.++...++++.|+..|++++.+        .|+.+.+++..|.+....|+.++|.+
T Consensus       331 veld-----~~Da~----a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~  393 (458)
T PRK11906        331 SDIT-----TVDGK----ILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARI  393 (458)
T ss_pred             HhcC-----CCCHH----HHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            8775     55544    4899999999999999999999999999        89999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          373 ICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVL  418 (728)
Q Consensus       373 ~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~  418 (728)
                      .+++++++.|....      + ....+-.-.+...-.++|+.+|-+
T Consensus       394 ~i~~alrLsP~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        394 CIDKSLQLEPRRRK------A-VVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             HHHHHhccCchhhH------H-HHHHHHHHHHcCCchhhhHHHHhh
Confidence            99999988764321      1 222222212334456677766643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.19  E-value=3.3e-05  Score=79.88  Aligned_cols=120  Identities=17%  Similarity=0.108  Sum_probs=101.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004829          565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG  644 (728)
Q Consensus       565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  644 (728)
                      |-.++...++++.|+..+++..+.        .+   .+...++.++...++..+|+..+.+++..        .|....
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~--------~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~  235 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRER--------DP---EVAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE  235 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhc--------CC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence            445556678899998888887654        22   34556899999999999999999999976        777788


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004829          645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTF  712 (728)
Q Consensus       645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~l  712 (728)
                      .+...|..+...++++.|+...++++.+.        |.....|+.|+.+|..+|++++|. ..++.+
T Consensus       236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~AL-laLNs~  294 (395)
T PF09295_consen  236 LLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENAL-LALNSC  294 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHH-HHHhcC
Confidence            88999999999999999999999999964        999999999999999999999999 555543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=7.5e-05  Score=72.24  Aligned_cols=116  Identities=18%  Similarity=0.131  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhc
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY---TINEAADLFEEARTILEKEY  635 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~  635 (728)
                      +.-|..||.+|..+|++..|...|.+|+++        .+.....+..+|.++..+.   ...++..+|++++..     
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-----  222 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-----  222 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----
Confidence            456788999999999999999999999998        3334577888888877654   578999999999999     


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 004829          636 GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAEL  694 (728)
Q Consensus       636 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~  694 (728)
                         +|....+++.||..++..|+|.+|...++..+..    +.++.|....+-..++..
T Consensus       223 ---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr~~ie~~ia~~  274 (287)
T COG4235         223 ---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRRSLIERSIARA  274 (287)
T ss_pred             ---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHHH
Confidence               8999999999999999999999999999999984    345555555444444443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.16  E-value=3.7e-05  Score=79.54  Aligned_cols=120  Identities=14%  Similarity=0.198  Sum_probs=101.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Q 004829          524 IAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIA  603 (728)
Q Consensus       524 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  603 (728)
                      |..++...++++.|+..+++..+..+          .+...++.++...++..+|+..+.+++..        .+..+..
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~p----------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~L  236 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDP----------EVAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSEL  236 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCC----------cHHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHH
Confidence            34555667889999999998765432          13456899999999999999999999954        2223678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          604 LNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV  669 (728)
Q Consensus       604 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a  669 (728)
                      +...+..+...++++.|+...++++.+        .|.....|+.||.+|..+|+++.|+..++.+
T Consensus       237 L~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  237 LNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            888999999999999999999999999        9999999999999999999999999887754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=0.0048  Score=58.66  Aligned_cols=227  Identities=12%  Similarity=0.075  Sum_probs=158.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHH----HHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC
Q 004829          313 MQLGDTYAMLGQIENSILCYTAGLEI----QRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA  388 (728)
Q Consensus       313 ~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  388 (728)
                      ..+|.-....+++++|+..|.+.+.-    -++.    -.+.-.+...++.+|...|++..--+......+...+...+.
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k   82 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPK   82 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchh
Confidence            45677777889999999999888765    1111    123445778899999999998876666666555554443322


Q ss_pred             cHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829          389 SIEEAADRRLMGL-ICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK  467 (728)
Q Consensus       389 ~~~~a~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  467 (728)
                         .+.+...+-. +-.....++.-+..+...++.+.+..........-..+..+++..|.|.+|+......+.-+++. 
T Consensus        83 ---~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~-  158 (421)
T COG5159          83 ---ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY-  158 (421)
T ss_pred             ---HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh-
Confidence               2222333322 22234567777777777776654444333444556678889999999999999999998888877 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEE-IASGLIDIAAIYQSMNELEQAVKLLNKALK  546 (728)
Q Consensus       468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  546 (728)
                       ++.+....++..-..+|....+..++...+..|........   .+|. .+..-..-|.+++...+|.-|..+|-++++
T Consensus       159 -DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y---CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E  234 (421)
T COG5159         159 -DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY---CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE  234 (421)
T ss_pred             -cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC---CCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence             56777778888888999999999999988888777765543   2333 333333446677788899999999999998


Q ss_pred             HHhcC
Q 004829          547 IYGKT  551 (728)
Q Consensus       547 ~~~~~  551 (728)
                      -+...
T Consensus       235 gft~l  239 (421)
T COG5159         235 GFTLL  239 (421)
T ss_pred             ccccc
Confidence            76654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.14  E-value=4.8e-05  Score=65.55  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA  680 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  680 (728)
                      ...++.-|...++.|+|.+|++.|+.....+     |..+....+...|+.+|+..+++++|+..+++.+++.     |.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence            4678888999999999999999999877662     3345566789999999999999999999999999965     89


Q ss_pred             ChHHHHHHHHHHHHHHHhCC---------------hhHHHHHHHHHHHhhccccc
Q 004829          681 NPDVEDEKRRLAELLKEAGR---------------VRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       681 ~p~~~~~~~~La~~~~~~g~---------------~~~A~~~~l~~ll~~~~~~~  720 (728)
                      ||...-+++..|.++..+..               ..+|. ..++.++...|+..
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~-~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF-RDFEQLVRRYPNSE  133 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH-HHHHHHHHHCcCCh
Confidence            99999999999999999887               88888 89999999988754

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.14  E-value=0.00019  Score=68.01  Aligned_cols=174  Identities=17%  Similarity=0.131  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829          311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI  390 (728)
Q Consensus       311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  390 (728)
                      .++.-|......|+|++|+..|+.+....     +..|....+...++.++++.++++.|+...++-+.++|.+.+.   
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~---  107 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA---  107 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh---
Confidence            48889999999999999999999887653     2356677899999999999999999999999999999877654   


Q ss_pred             HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhcCCChh--------------HHHHHHHHHHHHHHhCCHHH
Q 004829          391 EEAADRRLMGLICDSK-----GDYEAALEHYVLASMSMAANGHELD--------------VASIDCSIGDAYLSLARFDE  451 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~  451 (728)
                        ..+++..|.+++..     .|...+...+...-.+....++.+-              ++.--..+|..|.+.|.+..
T Consensus       108 --dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A  185 (254)
T COG4105         108 --DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA  185 (254)
T ss_pred             --hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence              33577777776643     3344444444443344444443322              12233567889999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004829          452 AIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE  499 (728)
Q Consensus       452 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  499 (728)
                      |+..++.+++-+..     .+....++..+..+|..+|-.++|...-.
T Consensus       186 A~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~  228 (254)
T COG4105         186 AINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAKKTAK  228 (254)
T ss_pred             HHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            99999999987543     45667888899999999999999876543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.14  E-value=4.8e-05  Score=82.48  Aligned_cols=136  Identities=11%  Similarity=0.016  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHH
Q 004829          394 ADRRLMGLICDSKGD---YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD--------EAIFSYHKALTA  462 (728)
Q Consensus       394 ~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~  462 (728)
                      ..++..|..+...++   +..|+.+|++|+.+      +|+.+.++..++.+|.....+.        .+.....+++.+
T Consensus       340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKS------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            344555555555444   78999999999977      7888888888888776653332        333333333222


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829          463 FKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN  542 (728)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  542 (728)
                            ...+....++..+|..+...|++++|...+++|+.+.         +. +.+|..+|.++...|++++|+..|+
T Consensus       414 ------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---------ps-~~a~~~lG~~~~~~G~~~eA~~~~~  477 (517)
T PRK10153        414 ------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---------MS-WLNYVLLGKVYELKGDNRLAADAYS  477 (517)
T ss_pred             ------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                  1133345778888999999999999999999999982         32 5789999999999999999999999


Q ss_pred             HHHHHHhcC
Q 004829          543 KALKIYGKT  551 (728)
Q Consensus       543 ~al~~~~~~  551 (728)
                      +|+.+.+..
T Consensus       478 ~A~~L~P~~  486 (517)
T PRK10153        478 TAFNLRPGE  486 (517)
T ss_pred             HHHhcCCCC
Confidence            999987665

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.14  E-value=5e-05  Score=82.32  Aligned_cols=131  Identities=11%  Similarity=-0.014  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHH
Q 004829          311 GCMQLGDTYAMLGQ---IENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQF--------DEAEKICQMALD  379 (728)
Q Consensus       311 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~  379 (728)
                      -++..|..|...+.   +..|+.+|++++++        +|..+.++..++.+|.....+        ..+.....+++.
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            46667777766654   88999999999999        899999999888887665332        233333333322


Q ss_pred             HHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          380 IHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKA  459 (728)
Q Consensus       380 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  459 (728)
                      +..   ++..   ..++..+|..+...|++++|...+++|+.+      .+. +.+|..+|.++...|++++|++.|++|
T Consensus       413 l~~---~~~~---~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        413 LPE---LNVL---PRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             ccc---CcCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            211   1111   346778888888999999999999999876      343 679999999999999999999999999


Q ss_pred             HHH
Q 004829          460 LTA  462 (728)
Q Consensus       460 l~~  462 (728)
                      +.+
T Consensus       480 ~~L  482 (517)
T PRK10153        480 FNL  482 (517)
T ss_pred             Hhc
Confidence            998

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.13  E-value=4.7e-05  Score=72.73  Aligned_cols=102  Identities=18%  Similarity=0.233  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829          562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD  641 (728)
Q Consensus       562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  641 (728)
                      +++.|.-++..|+|..|...|...++.+     ++....+.++++||.+++.+|+|+.|...|..+.+-+     +.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence            6788888999999999999999998864     3345567899999999999999999999999998863     55777


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          642 TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       642 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      ..++++.||.+...+|+.++|...|+++++-+
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            88899999999999999999999999999854

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.13  E-value=0.0026  Score=63.84  Aligned_cols=256  Identities=13%  Similarity=0.079  Sum_probs=144.6

Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChhHHHHHHHHhhhhhhh-----hcCCchh
Q 004829          232 MISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLG-QYNEAIPVLERSVEIPVL-----EDGQDHA  305 (728)
Q Consensus       232 ~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~-----~~~~~~~  305 (728)
                      .+..| +++.|..++.++-.... ..........+..+++.|......+ ++++|..+++++.++...     ...++..
T Consensus         3 A~~~~-~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~   80 (278)
T PF08631_consen    3 AWKQG-DLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS   80 (278)
T ss_pred             chhhC-CHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence            45666 89999999999987764 2112222557888999999999999 999999999999999633     2223333


Q ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 004829          306 LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENT  385 (728)
Q Consensus       306 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  385 (728)
                      ...+.++..++.+|...+.++.... ...++......+    |+....+..--.+....++.+.+.+.+.+++.-..-..
T Consensus        81 elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~----~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e  155 (278)
T PF08631_consen   81 ELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEY----GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE  155 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhC----CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence            4567789999999999988765544 333444443332    23223332222333337888888888888876543111


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHh--CCHHHH--HHHHHHHH
Q 004829          386 SPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA-NGHELDVASIDCSIGDAYLSL--ARFDEA--IFSYHKAL  460 (728)
Q Consensus       386 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~--g~~~~A--~~~~~~al  460 (728)
                      .  ...  .+...+-. + .......|...+...+...-. ..+. ......  +-.++...  ++....  ++.....+
T Consensus       156 ~--~~~--~~l~~i~~-l-~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~v--l~~~~~~~~~~~~~~~~~i~~l~~~~  226 (278)
T PF08631_consen  156 S--NFD--SILHHIKQ-L-AEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLV--LTRVLLTTQSKDLSSSEKIESLEELL  226 (278)
T ss_pred             c--hHH--HHHHHHHH-H-HhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHH--HHHHHHHcCCccccchhHHHHHHHHH
Confidence            1  110  01111111 1 112334555555554432211 1111 111111  11222222  222222  44444444


Q ss_pred             HHHHHhcCCC-CHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          461 TAFKSAKGEN-HPA----VASVFVRLADLYHKIGKLRDSKSYCENALK  503 (728)
Q Consensus       461 ~~~~~~~~~~-~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (728)
                      ....+..+.. .+.    ....+.+.|...++.++|++|..+|+-++.
T Consensus       227 ~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  227 SIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            4333332221 222    224566778999999999999999998763

It is also involved in sporulation [].

>PRK15331 chaperone protein SicA; Provisional

Probab=98.13  E-value=3.5e-05  Score=67.90  Aligned_cols=98  Identities=12%  Similarity=0.073  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829          308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP  387 (728)
Q Consensus       308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  387 (728)
                      .+...+..|.-++..|++++|..+|+-..-.        ++...+.+..||.++..+++|++|+..|..+..+....+.+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence            4556889999999999999999999977766        67778889999999999999999999999999887665544


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASM  421 (728)
Q Consensus       388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  421 (728)
                              .+..|.|+..+|+...|+..|..++.
T Consensus       108 --------~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        108 --------VFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             --------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence                    67899999999999999999998875

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.10  E-value=0.0059  Score=61.28  Aligned_cols=254  Identities=20%  Similarity=0.128  Sum_probs=148.9

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHh-c---CCC----hh
Q 004829          361 HVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKG-DYEAALEHYVLASMSMAA-N---GHE----LD  431 (728)
Q Consensus       361 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~-~---~~~----~~  431 (728)
                      ...+|+++.|..++.++-..............+..+++.|......+ +++.|..+++++.+++.. .   ...    ..
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35789999999999999887753332233456778999999999999 999999999999998644 1   122    24


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG  511 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  511 (728)
                      ...++..++.+|...+.++...+ ..+++......++ ++|..   +..--.++...++.+++.+.+.+++.-..-    
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~---~~L~l~il~~~~~~~~~~~~L~~mi~~~~~----  153 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEV---FLLKLEILLKSFDEEEYEEILMRMIRSVDH----  153 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHH---HHHHHHHHhccCChhHHHHHHHHHHHhccc----
Confidence            56778899999999988764444 4455555555433 23332   322223333378889999988888876431    


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC--CHHHH--HHHHHHHHH
Q 004829          512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG--NYSDS--YNTLKSAIS  587 (728)
Q Consensus       512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A--~~~~~~al~  587 (728)
                        ..............+.. .....|...+...+...-...... .....  .+..++...+  +....  ++.....+.
T Consensus       154 --~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~--vl~~~~~~~~~~~~~~~~~i~~l~~~~~  227 (278)
T PF08631_consen  154 --SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKL--VLTRVLLTTQSKDLSSSEKIESLEELLS  227 (278)
T ss_pred             --ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHH--HHHHHHHHcCCccccchhHHHHHHHHHH
Confidence              11122222222222222 234566666666655433321211 12211  1222232222  22222  444444444


Q ss_pred             HHHHh-CCCCcHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          588 KFRTS-GEKKSAL----FGIALNQMGLACVQRYTINEAADLFEEART  629 (728)
Q Consensus       588 ~~~~~-~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~  629 (728)
                      ..... ...-...    ....+.+.|..++..++|.+|+.+|+-++.
T Consensus       228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            33322 2221221    123466778999999999999999998763

It is also involved in sporulation [].

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.09  E-value=0.00041  Score=65.19  Aligned_cols=242  Identities=13%  Similarity=0.123  Sum_probs=160.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHH
Q 004829          237 ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLG  316 (728)
Q Consensus       237 ~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la  316 (728)
                      .++++|+.-|++++.+-     +.....-..++-.+..+++.+|+|++-...|.+.+.........+...-.+   ..+-
T Consensus        41 ~~p~~Al~sF~kVlelE-----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsI---N~Il  112 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELE-----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSI---NSIL  112 (440)
T ss_pred             cCHHHHHHHHHHHHhcc-----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHH---HHHH
Confidence            47999999999999873     222233466788889999999999999999999988765444444433322   2222


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH----HH
Q 004829          317 DTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI----EE  392 (728)
Q Consensus       317 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~  392 (728)
                      ..-....+.+--..+|+..++..+..  .++.....+...||.+|+..+.|.+-.+.+.+.-.-+....+.++.    ..
T Consensus       113 DyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQL  190 (440)
T KOG1464|consen  113 DYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQL  190 (440)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchh
Confidence            22223344444455666666554432  1233334455679999999999998888888777666554443322    22


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829          393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP  472 (728)
Q Consensus       393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  472 (728)
                      ..+|..-..+|..+.+-..-..+|++++.+-...+.+.-...+.-.=|.++.+.|+|++|...|-+|..-+.+...+ ..
T Consensus       191 LEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-RR  269 (440)
T KOG1464|consen  191 LEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-RR  269 (440)
T ss_pred             hhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-ch
Confidence            33444455677778888888888999887766555554555555566788999999999999998888876665221 23


Q ss_pred             HHHHHHHHHHHHHHHcC
Q 004829          473 AVASVFVRLADLYHKIG  489 (728)
Q Consensus       473 ~~~~~~~~la~~~~~~g  489 (728)
                      ....-|..||..+.+.|
T Consensus       270 ttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  270 TTCLKYLVLANMLMKSG  286 (440)
T ss_pred             hHHHHHHHHHHHHHHcC
Confidence            34445666777777765

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=0.00059  Score=63.95  Aligned_cols=141  Identities=14%  Similarity=0.027  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh
Q 004829          352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD  431 (728)
Q Consensus       352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  431 (728)
                      .+.+.++.++.-.+.|.-....+.+.++..+...       ......||.+..+.||.+.|..+|+..-+.......-..
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~-------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~  250 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE-------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG  250 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch
Confidence            4566778888889999999999999988443221       235778999999999999999999977655555555556


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      ...+..+.+.+|.-.+++..|...|.+++..        ++..+.+.++.|.|+...|+..+|++.++.++.+...
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            6778889999999999999999999999887        7788889999999999999999999999999888543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.07  E-value=8.9e-06  Score=62.06  Aligned_cols=67  Identities=28%  Similarity=0.348  Sum_probs=56.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829          611 CVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR  690 (728)
Q Consensus       611 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~  690 (728)
                      ++..|++++|+..|++++..        +|+...+++.+|.+|...|++++|...+++++.        .+|+....+..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--------~~~~~~~~~~l   64 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--------QDPDNPEYQQL   64 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--------GGTTHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HCcCHHHHHHH
Confidence            35789999999999999999        888899999999999999999999999999998        34666555555


Q ss_pred             HHH
Q 004829          691 LAE  693 (728)
Q Consensus       691 La~  693 (728)
                      ++.
T Consensus        65 ~a~   67 (68)
T PF14559_consen   65 LAQ   67 (68)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            554

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.04  E-value=0.00013  Score=62.94  Aligned_cols=105  Identities=15%  Similarity=0.109  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                      ...++.-|...+..|+|.+|++.|+.....+.     ..+....+...|+.+|+..+++++|+..+++.+++     .|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-----~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-----FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence            45567889999999999999999988766532     23334578899999999999999999999999998     577


Q ss_pred             ChhHHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHHH
Q 004829          639 HHDTLGVYSNLAGTYDAMGR---------------IDDAIEILEYVVGMR  673 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~---------------~~~A~~~~~~al~~~  673 (728)
                      ||...-+++..|.++..+..               ..+|...|++.+..+
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            88888899999999998876               778888888888754

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.04  E-value=0.00024  Score=62.94  Aligned_cols=122  Identities=19%  Similarity=0.197  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829          562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD  641 (728)
Q Consensus       562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  641 (728)
                      .+.||..+...|++.+|...|++++.-.       -......+..++++.+..+++..|...+++..+.        +|.
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--------~pa  156 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--------NPA  156 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--------CCc
Confidence            4578999999999999999999998631       1112467888999999999999999999987775        222


Q ss_pred             --HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHH
Q 004829          642 --TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSR  707 (728)
Q Consensus       642 --~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~  707 (728)
                        .......+|.+|..+|++.+|...|+.++..+        |. ..+....+..+..+|+.++|.++
T Consensus       157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~ar~~Y~e~La~qgr~~ea~aq  215 (251)
T COG4700         157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQARIYYAEMLAKQGRLREANAQ  215 (251)
T ss_pred             cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHhcchhHHHHH
Confidence              23356778999999999999999999999854        32 34566778999999999999853

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.01  E-value=0.0011  Score=59.02  Aligned_cols=162  Identities=18%  Similarity=0.133  Sum_probs=119.2

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 004829          359 EAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCS  438 (728)
Q Consensus       359 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  438 (728)
                      ....+.-+.+....-..+.+++.|..         .-.+.||......|++.+|..+|++++.     +.-......+..
T Consensus        64 ~a~~q~ldP~R~~Rea~~~~~~ApTv---------qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLg  129 (251)
T COG4700          64 MALQQKLDPERHLREATEELAIAPTV---------QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLG  129 (251)
T ss_pred             HHHHHhcChhHHHHHHHHHHhhchhH---------HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHH
Confidence            33444445665555555555555443         2367899999999999999999999873     223344567889


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH
Q 004829          439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA  518 (728)
Q Consensus       439 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  518 (728)
                      ++...+..+++..|...+++..+.-      .....+.....+|.+|...|++.+|...|+.++..+..          .
T Consensus       130 lA~Aqfa~~~~A~a~~tLe~l~e~~------pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~  193 (251)
T COG4700         130 LAQAQFAIQEFAAAQQTLEDLMEYN------PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------P  193 (251)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhhcC------CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------H
Confidence            9999999999999999999888761      11223455677899999999999999999999998532          2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      ......+..+..+|+.++|...+....+...+
T Consensus       194 ~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r  225 (251)
T COG4700         194 QARIYYAEMLAKQGRLREANAQYVAVVDTAKR  225 (251)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            34555678889999999888877766555443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.97  E-value=0.022  Score=61.51  Aligned_cols=188  Identities=12%  Similarity=0.053  Sum_probs=126.3

Q ss_pred             HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHH----HcCChHHHHHHHHHHHHHHcCCCCCCCcHHH
Q 004829          445 SLARFDEAIFSYHKALTAFKSAKGENHPAVA---SVFVRLADLYH----KIGKLRDSKSYCENALKIYGKPNHGIPSEEI  517 (728)
Q Consensus       445 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  517 (728)
                      -.|+-+.++..+.++.+. ...   ..|...   ..|+.....+.    .....+.|...+......+         |.-
T Consensus       200 F~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---------P~s  266 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---------PNS  266 (468)
T ss_pred             cCCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---------CCc
Confidence            468999999999887652 111   111111   11111111111    2335567777777777764         345


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829          518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS  597 (728)
Q Consensus       518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  597 (728)
                      +..+...|+++...|+.++|+..|++++......   ......+++.++.++..+.+|++|..++.+..+.       +.
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~---~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~  336 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW---KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SK  336 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH---HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cc
Confidence            6678889999999999999999999988533322   1223456889999999999999999999988875       23


Q ss_pred             HHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829          598 ALFGIALNQMGLACVQRYTI-------NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       598 ~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~  656 (728)
                      ...+...+..|.++...|+.       ++|.++|.++-.+..+..+...|...-+. .-+.-|...
T Consensus       337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~-RK~~~~~~~  401 (468)
T PF10300_consen  337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVI-RKAQKYEKQ  401 (468)
T ss_pred             cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHH-HHHHHHHhc
Confidence            33466777888999999998       88889999888887776665555433332 333334443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=0.012  Score=55.39  Aligned_cols=239  Identities=12%  Similarity=0.072  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHhhhhhhh----------hcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829          268 CLHVLAAIHCSLGQYNEAIPVLERSVEIPVL----------EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLE  337 (728)
Q Consensus       268 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  337 (728)
                      .|...-.++.++..+++|..-+.-.-++...          .++......-+.....-|.+....|+..+.+.-+.....
T Consensus        71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~  150 (366)
T KOG2796|consen   71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKT  150 (366)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            3444455666677777776655543333210          011111111223344556667778888888776666555


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829          338 IQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV  417 (728)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~  417 (728)
                      ..+++               -..+......+..+..+++-+.              .+.+.+..++...+.|.-.+..+.
T Consensus       151 ~V~~i---------------i~~~e~~~~~ESsv~lW~KRl~--------------~Vmy~~~~~llG~kEy~iS~d~~~  201 (366)
T KOG2796|consen  151 VVSKI---------------LANLEQGLAEESSIRLWRKRLG--------------RVMYSMANCLLGMKEYVLSVDAYH  201 (366)
T ss_pred             HHHHH---------------HHHHHhccchhhHHHHHHHHHH--------------HHHHHHHHHHhcchhhhhhHHHHH
Confidence            53321               1112222223445555555443              246778889999999999999998


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHH
Q 004829          418 LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY  497 (728)
Q Consensus       418 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  497 (728)
                      +.+.     .+++........+|.+.++.|+.+.|..+|++.-+......  +-.....+..+.+.+|.-.+++..|...
T Consensus       202 ~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~--~~q~~~~V~~n~a~i~lg~nn~a~a~r~  274 (366)
T KOG2796|consen  202 SVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD--GLQGKIMVLMNSAFLHLGQNNFAEAHRF  274 (366)
T ss_pred             HHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--ccchhHHHHhhhhhheecccchHHHHHH
Confidence            8875     23455566788899999999999999999997765544442  2334556777888999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       498 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      +.+++..         ++..+.+.++.|.|....|+...|++.++.++++.+..
T Consensus       275 ~~~i~~~---------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  275 FTEILRM---------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             Hhhcccc---------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9988877         33456778889999999999999999999998876654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.94  E-value=2.7e-05  Score=75.29  Aligned_cols=94  Identities=18%  Similarity=0.245  Sum_probs=85.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004829          564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTL  643 (728)
Q Consensus       564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  643 (728)
                      ..|.-|+++|.|++|+.+|.+++..        .+..+..+.+.|.+|+++..|..|...+..|+.+        +....
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~  165 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYV  165 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHH
Confidence            5688999999999999999999987        4445678899999999999999999999999999        77788


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          644 GVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       644 ~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      .+|...+.+...+|+..+|.+-++.++++-
T Consensus       166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  166 KAYSRRMQARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence            899999999999999999999999999864

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.028  Score=54.97  Aligned_cols=165  Identities=11%  Similarity=-0.030  Sum_probs=129.0

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 004829          358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDC  437 (728)
Q Consensus       358 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  437 (728)
                      +.+....|++.+|-...++.++-+|...        .++..--..++..|+...-...+++.+..  -+.+.|-...+..
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDl--------la~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~G  179 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDL--------LAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHG  179 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhh--------hhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHH
Confidence            4456678899999888999988776543        23444556788889888888888776522  2455666678888


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHH
Q 004829          438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEI  517 (728)
Q Consensus       438 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  517 (728)
                      .++..+...|-|++|.+..++++++        ++....+...++.++...|++.++.++..+.-...+.     .....
T Consensus       180 myaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~-----s~mla  246 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ-----SWMLA  246 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh-----hhHHH
Confidence            8899999999999999999999999        8888999999999999999999999999887665543     12334


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          518 ASGLIDIAAIYQSMNELEQAVKLLNKAL  545 (728)
Q Consensus       518 ~~~~~~la~~~~~~g~~~~A~~~~~~al  545 (728)
                      ..-|...|.++...+.|+.|++.|.+-+
T Consensus       247 sHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  247 SHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            4556677888889999999999998643

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.88  E-value=5.1e-05  Score=58.76  Aligned_cols=59  Identities=22%  Similarity=0.302  Sum_probs=54.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          607 MGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       607 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      |..+|...+++++|+.++++++.+        +|+....+..+|.++..+|++.+|+..|+++++..
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            356889999999999999999999        88999999999999999999999999999999853

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.88  E-value=0.025  Score=60.49  Aligned_cols=178  Identities=13%  Similarity=0.092  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----HHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 004829          311 GCMQLGDTYAMLGQIENSILCYTAGLEI-----QRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENT  385 (728)
Q Consensus       311 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  385 (728)
                      .|..+|......-.++.|...|-++-..     .+++     .....--...|.+-..-|+|++|.+.|-.+-...    
T Consensus       694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----  764 (1189)
T KOG2041|consen  694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----  764 (1189)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence            3888888887777788887777664322     1111     0000111234455555688999988876543211    


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          386 SPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS  465 (728)
Q Consensus       386 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  465 (728)
                                  ....++...|++-...++++..    ....++.....++.++|..+..+..|++|.++|.+.-..   
T Consensus       765 ------------LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---  825 (1189)
T KOG2041|consen  765 ------------LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---  825 (1189)
T ss_pred             ------------hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---
Confidence                        1122455566665555444321    112345566788999999999999999999998876332   


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829          466 AKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN  542 (728)
Q Consensus       466 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  542 (728)
                                   -++..+|+...+|++-..+...             -|+....+-.+|..+...|.-++|.+.|-
T Consensus       826 -------------e~~~ecly~le~f~~LE~la~~-------------Lpe~s~llp~~a~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  826 -------------ENQIECLYRLELFGELEVLART-------------LPEDSELLPVMADMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             -------------HhHHHHHHHHHhhhhHHHHHHh-------------cCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence                         2334555555555543332221             11223344556666666776666666554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.045  Score=61.15  Aligned_cols=265  Identities=15%  Similarity=0.138  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE  391 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  391 (728)
                      |..+|.+....|...+|++.|-++-          +|   ..|.....+..+.|.|++-+.++..+.+...+..      
T Consensus      1107 WsqlakAQL~~~~v~dAieSyikad----------Dp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~------ 1167 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKAD----------DP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY------ 1167 (1666)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhcC----------Cc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc------
Confidence            5566666666666666666554431          22   2344444455556666666655555544333221      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                         +-..|...|.+.++..+-.+++.           .|..+. ....|.-++..|.|+.|.-+|...            
T Consensus      1168 ---id~eLi~AyAkt~rl~elE~fi~-----------gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~v------------ 1220 (1666)
T KOG0985|consen 1168 ---IDSELIFAYAKTNRLTELEEFIA-----------GPNVAN-IQQVGDRCFEEKMYEAAKLLYSNV------------ 1220 (1666)
T ss_pred             ---chHHHHHHHHHhchHHHHHHHhc-----------CCCchh-HHHHhHHHhhhhhhHHHHHHHHHh------------
Confidence               11123334444444444333221           122221 234555556666666555444322            


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                          .-+..||..+..+|+|+.|....++|-.              ..+|...+..+...+++.-|.-+           
T Consensus      1221 ----SN~a~La~TLV~LgeyQ~AVD~aRKAns--------------~ktWK~VcfaCvd~~EFrlAQiC----------- 1271 (1666)
T KOG0985|consen 1221 ----SNFAKLASTLVYLGEYQGAVDAARKANS--------------TKTWKEVCFACVDKEEFRLAQIC----------- 1271 (1666)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhhhccc--------------hhHHHHHHHHHhchhhhhHHHhc-----------
Confidence                2244566666777777777666655432              23455555555555544433211           


Q ss_pred             CCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          552 PGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       552 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                       |... ..+.-+-.+...|...|-|++-+.+++.++-+-+.        ..-.+..||.+|.+- ++++-.++++-....
T Consensus      1272 -GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA--------HMgmfTELaiLYsky-kp~km~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1272 -GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA--------HMGMFTELAILYSKY-KPEKMMEHLKLFWSR 1341 (1666)
T ss_pred             -CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH--------HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence             1110 11223345667777788888888887777765222        223455666665543 455544444322211


Q ss_pred             HH--HhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 004829          631 LE--KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI  663 (728)
Q Consensus       631 ~~--~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~  663 (728)
                      ..  +..  ...+.+..|..|..+|.+-..|+.|.
T Consensus      1342 vNipKvi--RA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1342 VNIPKVI--RAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             cchHHHH--HHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            00  000  01122335666666776666666554

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.86  E-value=8e-05  Score=72.11  Aligned_cols=95  Identities=15%  Similarity=0.155  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHH
Q 004829          521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALF  600 (728)
Q Consensus       521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  600 (728)
                      +...|.-|+++|+|++|+.+|.+++...+..       +..+.+.+.+|+++..|..|...+..|+.+        +..+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N-------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y  164 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN-------PVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY  164 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCC-------ccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence            3557889999999999999999999887654       245678999999999999999999999998        5567


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      ..+|...|.+...+|+..+|.+.++.++++
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence            889999999999999999999999999998

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.84  E-value=5e-05  Score=77.95  Aligned_cols=68  Identities=16%  Similarity=0.110  Sum_probs=62.0

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH---HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTL---GVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      .+..+.+++++|.+|..+|+|++|+..|++++++        +|+..   .+++++|.+|..+|++++|+.++++|+++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4456789999999999999999999999999999        66665   45999999999999999999999999996

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.84  E-value=3.2e-05  Score=52.28  Aligned_cols=41  Identities=41%  Similarity=0.707  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 004829          643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD  683 (728)
Q Consensus       643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~  683 (728)
                      +.++.+||.+|..+|++++|+.++++++.+.++++|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            45789999999999999999999999999999999999995

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.045  Score=53.74  Aligned_cols=301  Identities=11%  Similarity=0.055  Sum_probs=192.9

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC
Q 004829          313 MQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH----RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA  388 (728)
Q Consensus       313 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  388 (728)
                      +..+.......++++++..|...+......  ..++    ..-.+...++..|...|++.+-................+ 
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~--~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Ka-   84 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGA--SSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKA-   84 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccc--cCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhH-
Confidence            444555556677788888888887642111  1122    233467889999999999988777777666555444322 


Q ss_pred             cHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829          389 SIEEAADRRLMGLICD-SKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK  467 (728)
Q Consensus       389 ~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  467 (728)
                        ..+.....+-..+. .-+.+..-+..+...++...........-..-..+..+|...++|.+|+......+.-.++. 
T Consensus        85 --kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl-  161 (411)
T KOG1463|consen   85 --KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL-  161 (411)
T ss_pred             --HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Confidence              12233333333332 33455666777777776665544444444556778899999999999999999998888877 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEE-IASGLIDIAAIYQSMNELEQAVKLLNKALK  546 (728)
Q Consensus       468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  546 (728)
                       +|.+....++..=..+|+.+.+..+|...+..|......+.   .+|. .+..-..-|.++....+|.-|..||-+|.+
T Consensus       162 -DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY---cpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfE  237 (411)
T KOG1463|consen  162 -DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY---CPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFE  237 (411)
T ss_pred             -ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc---cCHHHHHHHHHhccceeecccccchHHHHHHHHHc
Confidence             45666777777778899999999999999988877765544   2333 333344456777778999999999999998


Q ss_pred             HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHH
Q 004829          547 IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR--YTINEAADLF  624 (728)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~  624 (728)
                      -+... +.+.....++..+-.+-...+..++--..+..=..+ + ..++    ...++..++.++...  .+|+.|+.-|
T Consensus       238 gf~s~-~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l-~-y~g~----~i~AmkavAeA~~nRSLkdF~~AL~~y  310 (411)
T KOG1463|consen  238 GFDSL-DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLAL-K-YAGR----DIDAMKAVAEAFGNRSLKDFEKALADY  310 (411)
T ss_pred             ccccc-CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHH-h-ccCc----chHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence            87765 443333344444445555566666544433322211 1 1111    235666677776654  3677777777


Q ss_pred             HHHHHH
Q 004829          625 EEARTI  630 (728)
Q Consensus       625 ~~al~~  630 (728)
                      ..-+..
T Consensus       311 k~eL~~  316 (411)
T KOG1463|consen  311 KKELAE  316 (411)
T ss_pred             HHHHhc
Confidence            665554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=0.11  Score=58.15  Aligned_cols=231  Identities=16%  Similarity=0.128  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE  345 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  345 (728)
                      ...|..+|.+....|...+|++.|-+|-          +|.    .|.....+....|.|++-+.++..+-+..++..  
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyikad----------Dps----~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-- 1167 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD----------DPS----NYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-- 1167 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhcC----------CcH----HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--
Confidence            3458889999999999999999998753          222    277888888899999999998887765533210  


Q ss_pred             CChHHHHH---------------------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Q 004829          346 TDHRVGET---------------------CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICD  404 (728)
Q Consensus       346 ~~~~~~~~---------------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~  404 (728)
                      -+.....+                     .-..|.-++..+.|+.|.-+|...-                -+..|+..+.
T Consensus      1168 id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------------N~a~La~TLV 1231 (1666)
T KOG0985|consen 1168 IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------------NFAKLASTLV 1231 (1666)
T ss_pred             chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------------hHHHHHHHHH
Confidence            00011111                     1123333444445554444333221                2556778888


Q ss_pred             HcCCHHHHHHHHHHHHHHH------------------HhcCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          405 SKGDYEAALEHYVLASMSM------------------AANGHE-LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS  465 (728)
Q Consensus       405 ~~g~~~~A~~~~~~al~~~------------------~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  465 (728)
                      .+|+|..|...-++|-..-                  ...+-+ .-.+.-+-.+...|...|-|++-+..++.++-+   
T Consensus      1232 ~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL--- 1308 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL--- 1308 (1666)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch---
Confidence            8888888888777662110                  000000 011233456667788888888888888888877   


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829          466 AKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV  538 (728)
Q Consensus       466 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  538 (728)
                           .....-.+..||.+|.+- ++++-.++++-......-.. -....+.+..|..+.-+|.+-..|+.|.
T Consensus      1309 -----ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipK-viRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1309 -----ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPK-VIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             -----hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence                 444455677788777653 45555555443211100000 0001123455666666676666666553

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.77  E-value=5.9e-05  Score=57.45  Aligned_cols=67  Identities=18%  Similarity=0.180  Sum_probs=55.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004829          569 YYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSN  648 (728)
Q Consensus       569 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  648 (728)
                      ++..|++++|+..|++++..        .+....++..+|.+|...|++++|...+++++..        +|+....+..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l   64 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQL   64 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHH
Confidence            35789999999999999988        4445678899999999999999999999999987        6766656555


Q ss_pred             HHH
Q 004829          649 LAG  651 (728)
Q Consensus       649 La~  651 (728)
                      ++.
T Consensus        65 ~a~   67 (68)
T PF14559_consen   65 LAQ   67 (68)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            554

...

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.76  E-value=0.077  Score=55.46  Aligned_cols=103  Identities=8%  Similarity=-0.072  Sum_probs=68.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          262 SLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ  341 (728)
Q Consensus       262 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  341 (728)
                      +|....+|+.|-.-+..+ -++++.+.|++.+..+     +..+.    +|......-....+|+.-..+|.++|.-.-.
T Consensus        16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-----P~s~r----~W~~yi~~El~skdfe~VEkLF~RCLvkvLn   85 (656)
T KOG1914|consen   16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-----PSSPR----AWKLYIERELASKDFESVEKLFSRCLVKVLN   85 (656)
T ss_pred             CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-----CCCcH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            356677788887777666 9999999999998776     44443    3777777778889999999999999865321


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR  382 (728)
Q Consensus       342 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  382 (728)
                            -+...  ..|..+....++...+....-+|.++.-
T Consensus        86 ------lDLW~--lYl~YVR~~~~~~~~~r~~m~qAy~f~l  118 (656)
T KOG1914|consen   86 ------LDLWK--LYLSYVRETKGKLFGYREKMVQAYDFAL  118 (656)
T ss_pred             ------HhHHH--HHHHHHHHHccCcchHHHHHHHHHHHHH
Confidence                  12211  2233444455555555555555555443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.74  E-value=9.2e-05  Score=76.05  Aligned_cols=68  Identities=16%  Similarity=0.197  Sum_probs=53.5

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA---SVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      .|..+..++++|.+|+.+|+|++|+..|++++++        .|...   .+++++|.+|..+|++++|+.++++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4667778888888888888888888888888887        55554   45888888888888888888888888876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.73  E-value=0.00015  Score=56.13  Aligned_cols=58  Identities=17%  Similarity=0.130  Sum_probs=52.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      |..+|...++|++|+.++++++.+        .|.....+..+|.++...|++.+|...|+++++.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            356889999999999999999998        4445688999999999999999999999999988

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.72  E-value=0.13  Score=63.05  Aligned_cols=409  Identities=11%  Similarity=0.040  Sum_probs=204.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhH
Q 004829          227 KQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHAL  306 (728)
Q Consensus       227 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  306 (728)
                      .++..-++-+ .|..|+-++++--.      ...+.......+..+-.+|...++++........-..       ..   
T Consensus      1388 tLa~aSfrc~-~y~RalmylEs~~~------~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-------~~--- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCK-AYARALMYLESHRS------TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-------DP--- 1450 (2382)
T ss_pred             HHHHHHHhhH-HHHHHHHHHHHhcc------ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-------Cc---
Confidence            5666677775 78888888887410      0111122233355566689999999887776653111       01   


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 004829          307 AKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS  386 (728)
Q Consensus       307 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  386 (728)
                          .+...-......|++..|..+|+++++.        +|.....+..+-...+..|.+...+...+-...-..+   
T Consensus      1451 ----sl~~qil~~e~~g~~~da~~Cye~~~q~--------~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se--- 1515 (2382)
T KOG0890|consen 1451 ----SLYQQILEHEASGNWADAAACYERLIQK--------DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE--- 1515 (2382)
T ss_pred             ----cHHHHHHHHHhhccHHHHHHHHHHhhcC--------CCccccchhhHHHhhhcccchhHHHhhhcchhhccCH---
Confidence                1445556667789999999999999887        4544444444444445555665555433322211100   


Q ss_pred             CCcHHHHHHHHHHH-HHHHHcCCHHHHHHHHH-----------HHHHHHHhcCCChhHHHHHHHHHHH----------HH
Q 004829          387 PASIEEAADRRLMG-LICDSKGDYEAALEHYV-----------LASMSMAANGHELDVASIDCSIGDA----------YL  444 (728)
Q Consensus       387 ~~~~~~a~~~~~lg-~~~~~~g~~~~A~~~~~-----------~al~~~~~~~~~~~~~~~~~~la~~----------~~  444 (728)
                           ...-++.++ .+.+..++++.-..+..           .+.........++  ...+..+...          ..
T Consensus      1516 -----~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~--~~~~~~i~~~r~~~i~~lsa~s 1588 (2382)
T KOG0890|consen 1516 -----EVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDE--IATLDLIENSRELVIENLSACS 1588 (2382)
T ss_pred             -----HHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccch--hhHHHHHHHHHHHhhhhHHHhh
Confidence                 011122221 12244455544443321           0000000000000  0111111111          01


Q ss_pred             HhCCHHHHHHHHHHHHHHHHHh----------cCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCc
Q 004829          445 SLARFDEAIFSYHKALTAFKSA----------KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPS  514 (728)
Q Consensus       445 ~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  514 (728)
                      ..|-|..+.++.-+...+++-.          .+.+......-|.+....-....+..+-+-.+++++-.....  ..-.
T Consensus      1589 ~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~--~~~~ 1666 (2382)
T KOG0890|consen 1589 IEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMR--SNLK 1666 (2382)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcc--cccc
Confidence            1113333333333332222110          001111111111111111111112333334444444332211  1225


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829          515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE  594 (728)
Q Consensus       515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  594 (728)
                      ...+.+|...|++....|+++.|..++-.|.+..         .+.++...|..++..|+-..|+..+++.++.......
T Consensus      1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred             chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence            5689999999999999999999999888887653         2457778999999999999999999999976543211


Q ss_pred             ---------CCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH----------
Q 004829          595 ---------KKSALFGIALNQMGLACVQRYT--INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY----------  653 (728)
Q Consensus       595 ---------~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~----------  653 (728)
                               .+......+...++......++  -.+-+.+|..+.++        +|.....++.||..|          
T Consensus      1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~~yy~kll~~~~~~ 1809 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLGKYYDKLLEDYKSN 1809 (2382)
T ss_pred             CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHHHHHHHHhhhhhcc
Confidence                     1111122344455555555555  34566778888888        554444556666443          


Q ss_pred             --HHcCChHH---HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004829          654 --DAMGRIDD---AIEILEYVVGMREEKLGTANPDVEDEKRRLAE  693 (728)
Q Consensus       654 --~~~g~~~~---A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~  693 (728)
                        .+.|++..   |+..|.+++..-.+.+-..-|.....|..+|.
T Consensus      1810 ~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t 1854 (2382)
T KOG0890|consen 1810 KMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGT 1854 (2382)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcc
Confidence              23455555   55555555543222222223444444444433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.71  E-value=0.092  Score=54.99  Aligned_cols=51  Identities=14%  Similarity=0.042  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829          598 ALFGIALNQMGLACVQR------YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       598 ~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~  656 (728)
                      ...+.++..+|......      +..+++...|.++..+        +|....+++.+|..+...
T Consensus       249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence            34567788888888877      8899999999999999        888888999998887654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.072  Score=52.23  Aligned_cols=167  Identities=8%  Similarity=-0.071  Sum_probs=129.0

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHH
Q 004829          314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEA  393 (728)
Q Consensus       314 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a  393 (728)
                      .-+.+....|++.+|...+++.++-        .|....++..--.+++..|+...-...+++.+...  +  ++.+-..
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n--~dlp~~s  175 (491)
T KOG2610|consen  108 AKAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--N--ADLPCYS  175 (491)
T ss_pred             hhHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--C--CCCcHHH
Confidence            3445566789999999999998877        67777777777788888999888888887776432  1  1223334


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829          394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPA  473 (728)
Q Consensus       394 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  473 (728)
                      .+.-.++..+...|-|++|.+.-.+++++      .+....+...++.++...|++.++.++..+.-...+..    .-.
T Consensus       176 Yv~GmyaFgL~E~g~y~dAEk~A~ralqi------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~ml  245 (491)
T KOG2610|consen  176 YVHGMYAFGLEECGIYDDAEKQADRALQI------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WML  245 (491)
T ss_pred             HHHHHHHhhHHHhccchhHHHHHHhhccC------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHH
Confidence            45566778888999999999999998866      56667788889999999999999999988776655533    444


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829          474 VASVFVRLADLYHKIGKLRDSKSYCENAL  502 (728)
Q Consensus       474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al  502 (728)
                      ...-|...|.++...+.|+.|++.|.+-+
T Consensus       246 asHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  246 ASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            55667788999999999999999998744

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.63  E-value=0.082  Score=55.40  Aligned_cols=133  Identities=13%  Similarity=0.047  Sum_probs=98.2

Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q 004829          555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART-ILEK  633 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~  633 (728)
                      .......+..++.+..+.|+++.|...+.++..........    ...+....+.++...|+..+|+..++..+. ....
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~  217 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK  217 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence            44556788899999999999999999998887642111111    235677788999999999999999998887 3322


Q ss_pred             h-------------------------cCCCChhHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          634 E-------------------------YGPYHHDTLGVYSNLAGTYDAM------GRIDDAIEILEYVVGMREEKLGTANP  682 (728)
Q Consensus       634 ~-------------------------~~~~~~~~~~~~~~La~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~p  682 (728)
                      .                         ........+.++..+|......      +..+++...|.+++.+.        |
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~--------~  289 (352)
T PF02259_consen  218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD--------P  289 (352)
T ss_pred             ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC--------h
Confidence            2                         0112234566778888888888      88899999999999854        7


Q ss_pred             HHHHHHHHHHHHHHHhC
Q 004829          683 DVEDEKRRLAELLKEAG  699 (728)
Q Consensus       683 ~~~~~~~~La~~~~~~g  699 (728)
                      ....+++.+|..+...-
T Consensus       290 ~~~k~~~~~a~~~~~~~  306 (352)
T PF02259_consen  290 SWEKAWHSWALFNDKLL  306 (352)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            77778888888777653

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.62  E-value=0.0047  Score=64.49  Aligned_cols=107  Identities=18%  Similarity=0.217  Sum_probs=82.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004829          564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTL  643 (728)
Q Consensus       564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  643 (728)
                      ..|..+..+|+...|+.++..|+...       +......+.+||.+....|-...|-.++.+++.+.        ....
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~-------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~sep  676 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLA-------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SSEP  676 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccC-------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------ccCc
Confidence            34555667899999999999998653       22223467889999999999999999999999983        2233


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829          644 GVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR  690 (728)
Q Consensus       644 ~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~  690 (728)
                      -..+.+|.+|..+.+.+.|++.|++|++..     +..|.....+..
T Consensus       677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-----~~~~~~~~~l~~  718 (886)
T KOG4507|consen  677 LTFLSLGNAYLALKNISGALEAFRQALKLT-----TKCPECENSLKL  718 (886)
T ss_pred             hHHHhcchhHHHHhhhHHHHHHHHHHHhcC-----CCChhhHHHHHH
Confidence            467889999999999999999999999853     445554444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.57  E-value=0.0088  Score=53.58  Aligned_cols=126  Identities=21%  Similarity=0.234  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHhCCCC
Q 004829          518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSD-SYNTLKSAISKFRTSGEKK  596 (728)
Q Consensus       518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~  596 (728)
                      ...+...|......++...++..+++++.++...+-.....              ..|-. ....++..           
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------------~~W~~~~r~~l~~~-----------   60 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------------EEWVEPERERLREL-----------   60 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------------STTHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------------cHHHHHHHHHHHHH-----------
Confidence            33444556666778889999999999998876442111000              11111 11112211           


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK  676 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~  676 (728)
                         ...++..++..+...|++++|+..+++++.+        +|....++..+..+|..+|+..+|+..|+++.....+-
T Consensus        61 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e  129 (146)
T PF03704_consen   61 ---YLDALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE  129 (146)
T ss_dssp             ---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence               2356777888999999999999999999999        99999999999999999999999999999999999887


Q ss_pred             cCC
Q 004829          677 LGT  679 (728)
Q Consensus       677 ~~~  679 (728)
                      +|.
T Consensus       130 lg~  132 (146)
T PF03704_consen  130 LGI  132 (146)
T ss_dssp             HS-
T ss_pred             hCc
Confidence            774

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.00063  Score=62.95  Aligned_cols=99  Identities=13%  Similarity=0.132  Sum_probs=88.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004829          563 AQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDT  642 (728)
Q Consensus       563 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  642 (728)
                      ..-|..|+.-.+|..|+.+|-+++.+        .|..+..+.+.+.++++..+++.+.....+++++        .|+.
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~   77 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNL   77 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHH
Confidence            34466777788999999999999987        5666788999999999999999999999999999        9999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004829          643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKL  677 (728)
Q Consensus       643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~  677 (728)
                      +...+.||.+......+++|+..+.++..+.+...
T Consensus        78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP  112 (284)
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999998876653

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.50  E-value=0.044  Score=60.78  Aligned_cols=281  Identities=14%  Similarity=0.083  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 004829          325 IENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQS-----LQFDEAEKICQMALDIHRENTSPASIEEAADRRLM  399 (728)
Q Consensus       325 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l  399 (728)
                      ...|..+++.+...          ....+...+|.+|..-     .+.+.|+.+|+.+...+.......   ...+.+.+
T Consensus       228 ~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~l  294 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGL  294 (552)
T ss_pred             hhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHH
Confidence            56778888777655          4456667777777654     589999999999987211110000   11246788


Q ss_pred             HHHHHHcC-----CHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          400 GLICDSKG-----DYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA---RFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       400 g~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                      |.+|....     +...|+.+|.++...        ....+.+.+|.+|..-.   ++..|..+|..|...         
T Consensus       295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~---------  357 (552)
T KOG1550|consen  295 GRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA---------  357 (552)
T ss_pred             HHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---------
Confidence            99888753     678899999887642        33467788898888765   567899999888764         


Q ss_pred             HHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 004829          472 PAVASVFVRLADLYHK----IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM-NELEQAVKLLNKALK  546 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  546 (728)
                       ....+.+.+|.+|..    .-+...|..++.++.+.-        +   +.+...++.++..- +.+..+.-.+....+
T Consensus       358 -G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--------~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~  425 (552)
T KOG1550|consen  358 -GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--------N---PSAAYLLGAFYEYGVGRYDTALALYLYLAE  425 (552)
T ss_pred             -CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--------C---hhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence             235667888888875    347889999999998872        1   22233344333322 666666666555444


Q ss_pred             HHhcCCCCCCcHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc----CCHH
Q 004829          547 IYGKTPGQQSTIAGIEAQMGVMYYMT----GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR----YTIN  618 (728)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~  618 (728)
                      .--+....   .+..+..........    .+...+...+.++...          ....+...+|.+|..-    .+++
T Consensus       426 ~g~~~~q~---~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g~~~d~~  492 (552)
T KOG1550|consen  426 LGYEVAQS---NAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLGTGRDPE  492 (552)
T ss_pred             hhhhHHhh---HHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCCCCCChH
Confidence            42222100   011111111111111    1344455555544332          1246777888888764    3699


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---CChHHHHHHHHHHHH
Q 004829          619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM---GRIDDAIEILEYVVG  671 (728)
Q Consensus       619 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~---g~~~~A~~~~~~al~  671 (728)
                      .|...|..+...        .   ....+++|.++..-   ..+..|.++|.++..
T Consensus       493 ~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~  537 (552)
T KOG1550|consen  493 KAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE  537 (552)
T ss_pred             HHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence            999999998875        3   67889999998762   126788888888876

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.48  E-value=0.012  Score=61.07  Aligned_cols=205  Identities=12%  Similarity=0.063  Sum_probs=132.5

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC-------
Q 004829          440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI-------  512 (728)
Q Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------  512 (728)
                      ..-..+..+...-++...+||++        .|+.+.+|..||.-  ...-..+|..+|+++++..+......       
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g  244 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHG  244 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhccc
Confidence            34445677888889999999999        88888888877752  23346788888888888665443211       


Q ss_pred             ---------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829          513 ---------PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLK  583 (728)
Q Consensus       513 ---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  583 (728)
                               +..-...+...+|.+..+.|+.++|++.++..++..+..     ....+..+|..+++.++.|.++...+.
T Consensus       245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-----~~l~IrenLie~LLelq~Yad~q~lL~  319 (539)
T PF04184_consen  245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-----DNLNIRENLIEALLELQAYADVQALLA  319 (539)
T ss_pred             chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-----chhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence                     111124556789999999999999999999988765422     234578899999999999999987776


Q ss_pred             HHHHHHHHhCCCCcHHHHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829          584 SAISKFRTSGEKKSALFGIALNQMGLACVQ-RYT---------------INEAADLFEEARTILEKEYGPYHHDTLGVYS  647 (728)
Q Consensus       584 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  647 (728)
                      +.-+    ...   +..+...+.-|.+..+ .++               -..|.+.+.+|++.        +|.+...+.
T Consensus       320 kYdD----i~l---pkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef--------NPHVp~YLL  384 (539)
T PF04184_consen  320 KYDD----ISL---PKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF--------NPHVPKYLL  384 (539)
T ss_pred             Hhcc----ccC---CchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh--------CCCCchhhh
Confidence            6422    111   1123333333333222 111               23466777788777        666554332


Q ss_pred             HH------HHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829          648 NL------AGTYDAMGRIDDAIEILEYVVGMREE  675 (728)
Q Consensus       648 ~L------a~~~~~~g~~~~A~~~~~~al~~~~~  675 (728)
                      .+      -.-+.+.|+ .||+.|.--.+..+++
T Consensus       385 e~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~  417 (539)
T PF04184_consen  385 EMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKR  417 (539)
T ss_pred             ccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhc
Confidence            21      112445565 7888877777766543

The molecular function of this protein is uncertain.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.48  E-value=0.0096  Score=61.65  Aligned_cols=132  Identities=15%  Similarity=0.106  Sum_probs=75.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchh-
Q 004829          227 KQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA-  305 (728)
Q Consensus       227 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-  305 (728)
                      ......++. .+++.-++...+|+.+.         |+.+.+|..|+.-.  ..-..+|..+|+++++..+...+.... 
T Consensus       173 ~IMq~AWRE-Rnp~aRIkaA~eALei~---------pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~  240 (539)
T PF04184_consen  173 EIMQKAWRE-RNPQARIKAAKEALEIN---------PDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFL  240 (539)
T ss_pred             HHHHHHHhc-CCHHHHHHHHHHHHHhh---------hhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhh
Confidence            444445555 48999999999999985         55577777776532  244688999999988865433222110 


Q ss_pred             ---------------HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHH
Q 004829          306 ---------------LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEA  370 (728)
Q Consensus       306 ---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  370 (728)
                                     ...+.+-..+|.|...+|+.++|++.++..++..+      ..+...+..+|..++...+.|.++
T Consensus       241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~  314 (539)
T PF04184_consen  241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADV  314 (539)
T ss_pred             hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHH
Confidence                           01122334555555555555555555555554411      112334555555555555555555


Q ss_pred             HHHHHH
Q 004829          371 EKICQM  376 (728)
Q Consensus       371 ~~~~~~  376 (728)
                      ..++.+
T Consensus       315 q~lL~k  320 (539)
T PF04184_consen  315 QALLAK  320 (539)
T ss_pred             HHHHHH
Confidence            544444

The molecular function of this protein is uncertain.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.47  E-value=0.2  Score=52.59  Aligned_cols=441  Identities=13%  Similarity=0.066  Sum_probs=232.7

Q ss_pred             cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhh
Q 004829          214 AGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSV  293 (728)
Q Consensus       214 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  293 (728)
                      ...++|.....|..+.+.+-.+  -++++.+.|++.+..+         |....+|.......+...+|+....+|.++|
T Consensus        12 rie~nP~di~sw~~lire~qt~--~~~~~R~~YEq~~~~F---------P~s~r~W~~yi~~El~skdfe~VEkLF~RCL   80 (656)
T KOG1914|consen   12 RIEENPYDIDSWSQLIREAQTQ--PIDKVRETYEQLVNVF---------PSSPRAWKLYIERELASKDFESVEKLFSRCL   80 (656)
T ss_pred             HHhcCCccHHHHHHHHHHHccC--CHHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3467888888998888877666  6999999999998764         4445556666777788899999999999988


Q ss_pred             hhhhhhcCCchhHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH---------HH
Q 004829          294 EIPVLEDGQDHALAKFAGC-MQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAH---------VQ  363 (728)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---------~~  363 (728)
                      .-.-          .+..| ..|..+....|+...+....-+|.++.....| .++.....|...+..+         ..
T Consensus        81 vkvL----------nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ee  149 (656)
T KOG1914|consen   81 VKVL----------NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKYEE  149 (656)
T ss_pred             HHHh----------hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccHHH
Confidence            5320          01112 22333444456655555555566555544333 2333334444433322         22


Q ss_pred             hCCHHHHHHHHHHHHHHHHHcCCC-----CcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC-C-------
Q 004829          364 SLQFDEAEKICQMALDIHRENTSP-----ASIE-EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH-E-------  429 (728)
Q Consensus       364 ~g~~~~A~~~~~~al~~~~~~~~~-----~~~~-~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~-------  429 (728)
                      ..+.+.-...|++++..--.+...     .... .......--.+-...-.|..|...+++...+.+.... .       
T Consensus       150 ~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~  229 (656)
T KOG1914|consen  150 NQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKG  229 (656)
T ss_pred             HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence            335566666777776311000000     0000 0000000111222334566666666665444322110 0       


Q ss_pred             ----hhHHHHHHHHHHHHHHhC------CH--HHHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHHcCChHH
Q 004829          430 ----LDVASIDCSIGDAYLSLA------RF--DEAIFSYHKALTAFKSAKGENHP----AVASVFVRLADLYHKIGKLRD  493 (728)
Q Consensus       430 ----~~~~~~~~~la~~~~~~g------~~--~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~  493 (728)
                          ......|.++-..-...+      ..  ..-.-.|++++...-     .+|    +....+...+.++...|+...
T Consensus       230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~-----~~peiWy~~s~yl~~~s~l~~~~~d~~~  304 (656)
T KOG1914|consen  230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLG-----YHPEIWYDYSMYLIEISDLLTEKGDVPD  304 (656)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHhhHHHHHhccccc
Confidence                011122222221111111      10  111223444443311     122    233444556667777777554


Q ss_pred             -------HHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 004829          494 -------SKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMN---ELEQAVKLLNKALKIYGKTPGQQSTIAGIEA  563 (728)
Q Consensus       494 -------A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  563 (728)
                             +..+|++++....        ......++.++..-...-   .++....++++++.+....+    +  .++.
T Consensus       305 a~~~t~e~~~~yEr~I~~l~--------~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~----t--Lv~~  370 (656)
T KOG1914|consen  305 AKSLTDEAASIYERAIEGLL--------KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL----T--LVYC  370 (656)
T ss_pred             chhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC----c--eehh
Confidence                   4555555554421        112333444443332222   25666677777777654432    1  2333


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004829          564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMG-LACVQRYTINEAADLFEEARTILEKEYGPYHHDT  642 (728)
Q Consensus       564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  642 (728)
                      .+-..-.+..-...|...|.+|-+.    ....+    .++..-| .-|...++.+-|...|+-.+..        +++.
T Consensus       371 ~~mn~irR~eGlkaaR~iF~kaR~~----~r~~h----hVfVa~A~mEy~cskD~~~AfrIFeLGLkk--------f~d~  434 (656)
T KOG1914|consen  371 QYMNFIRRAEGLKAARKIFKKARED----KRTRH----HVFVAAALMEYYCSKDKETAFRIFELGLKK--------FGDS  434 (656)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhc----cCCcc----hhhHHHHHHHHHhcCChhHHHHHHHHHHHh--------cCCC
Confidence            4444445555566677777776543    11111    1222222 2345678999999999999887        4444


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcc
Q 004829          643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNS  717 (728)
Q Consensus       643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~  717 (728)
                      ...-......+...++-..|..+|++++..   .+  .-.....+|..+-..-..-|+...++ +.-+......|
T Consensus       435 p~yv~~YldfL~~lNdd~N~R~LFEr~l~s---~l--~~~ks~~Iw~r~l~yES~vGdL~si~-~lekR~~~af~  503 (656)
T KOG1914|consen  435 PEYVLKYLDFLSHLNDDNNARALFERVLTS---VL--SADKSKEIWDRMLEYESNVGDLNSIL-KLEKRRFTAFP  503 (656)
T ss_pred             hHHHHHHHHHHHHhCcchhHHHHHHHHHhc---cC--ChhhhHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhcc
Confidence            444455556778899999999999999874   11  11234566777777777888888877 55555444444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.45  E-value=0.00028  Score=47.57  Aligned_cols=41  Identities=39%  Similarity=0.442  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD  641 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  641 (728)
                      +.++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46789999999999999999999999999999999999885

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.00081  Score=62.27  Aligned_cols=100  Identities=21%  Similarity=0.331  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcH
Q 004829          436 DCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSE  515 (728)
Q Consensus       436 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  515 (728)
                      +..-|..++.-.+|+.|+..|.+++.+        +|..+..+.+.+.+|++..+++.+.....+++++         .+
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---------~~   75 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---------DP   75 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc---------Ch
Confidence            344566777788999999999999998        9999999999999999999999999999999999         57


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829          516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP  552 (728)
Q Consensus       516 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  552 (728)
                      ..+..++.+|........|++|+..++++..+....+
T Consensus        76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP  112 (284)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence            7899999999999999999999999999999887653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.44  E-value=0.023  Score=51.45  Aligned_cols=97  Identities=14%  Similarity=0.078  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829          562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD  641 (728)
Q Consensus       562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  641 (728)
                      ...++..+...+++++|+..++.++...     .+......+-.+||.+..++|++++|+..+.....         +..
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w  157 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESW  157 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccH
Confidence            4567888899999999999999988642     22334466778899999999999999988776433         223


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          642 TLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       642 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      ........|.++...|+.++|+..|+++++.
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            4445667899999999999999999999985

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.0014  Score=63.75  Aligned_cols=106  Identities=14%  Similarity=0.097  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Q 004829          265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLG  344 (728)
Q Consensus       265 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  344 (728)
                      .+.-+-.-|+-|+...+|..|+..|.+.|+..     ..++...+.+|.+.|.+....|+|..|+....+++.+      
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            45556777999999999999999999999764     4444556678999999999999999999999999999      


Q ss_pred             CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          345 ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE  383 (728)
Q Consensus       345 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  383 (728)
                        +|....+++.-|.|++.+.++++|..+++..+.+..+
T Consensus       149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence              8999999999999999999999999999999876543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.38  E-value=0.053  Score=60.12  Aligned_cols=282  Identities=15%  Similarity=0.054  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----CChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHH
Q 004829          239 PQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSL-----GQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCM  313 (728)
Q Consensus       239 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  313 (728)
                      ...|..+++.+...           ....+...+|.+|..-     .+.+.|+.+|+.+............+.    +.+
T Consensus       228 ~~~a~~~~~~~a~~-----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~----a~~  292 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL-----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP----AQY  292 (552)
T ss_pred             hhHHHHHHHHHHhh-----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc----ccc
Confidence            46778888777663           2345566778887654     679999999999987211001111222    378


Q ss_pred             HHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHcC
Q 004829          314 QLGDTYAMLG-----QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL---QFDEAEKICQMALDIHRENT  385 (728)
Q Consensus       314 ~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~  385 (728)
                      .+|.+|....     ++..|+.+|.++...          ....+.+.+|.+|..-.   ++..|..+|..|....    
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----  358 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----  358 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC----
Confidence            8999998854     678899999988776          44567888888887665   5678888888886432    


Q ss_pred             CCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHH
Q 004829          386 SPASIEEAADRRLMGLICDS----KGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSL-ARFDEAIFSYHKAL  460 (728)
Q Consensus       386 ~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al  460 (728)
                            ...+.+.++.+|..    .-+...|..++.++.+.        ..+.+...++.++..- ++++.+.-.+....
T Consensus       359 ------~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~--------g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a  424 (552)
T KOG1550|consen  359 ------HILAIYRLALCYELGLGVERNLELAFAYYKKAAEK--------GNPSAAYLLGAFYEYGVGRYDTALALYLYLA  424 (552)
T ss_pred             ------ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc--------cChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence                  12357777777764    34788999999988643        1223344444444332 77777777666555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHc----C
Q 004829          461 TAFKSAKGENHPAVASVFVRLADLYHKI----GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM----N  532 (728)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g  532 (728)
                      ++--..    ....+..+..........    .+...+...+.++...           ....+...+|.+|+.-    .
T Consensus       425 ~~g~~~----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----------g~~~a~~~lgd~y~~g~g~~~  489 (552)
T KOG1550|consen  425 ELGYEV----AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ-----------GNADAILKLGDYYYYGLGTGR  489 (552)
T ss_pred             HhhhhH----HhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-----------cCHHHHhhhcceeeecCCCCC
Confidence            542211    111111111111111111    1344555555554433           2345677788887654    4


Q ss_pred             CHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Q 004829          533 ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMT---GNYSDSYNTLKSAISK  588 (728)
Q Consensus       533 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~  588 (728)
                      +++.|...|..+....          +...+++|.++..-   ..+..|..+|.++.+.
T Consensus       490 d~~~a~~~y~~a~~~~----------~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~  538 (552)
T KOG1550|consen  490 DPEKAAAQYARASEQG----------AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE  538 (552)
T ss_pred             ChHHHHHHHHHHHHhh----------hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence            6889999998887543          34567888887532   1267888888888664

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.38  E-value=0.019  Score=47.10  Aligned_cols=119  Identities=13%  Similarity=0.084  Sum_probs=86.9

Q ss_pred             HHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          560 GIEAQMG--VMYYMTGNYSDSYNTLKSAISKFRTSGEKKS----ALFGIALNQMGLACVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       560 ~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                      .+|..|+  .-.+.-|-|++|...+++|+++.+.+.....    -..+.++..|+.++..+|+|++++..-..++..+.+
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            3444443  3446678999999999999999887755432    234678889999999999999999999999998877


Q ss_pred             hcCCC---ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829          634 EYGPY---HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG  678 (728)
Q Consensus       634 ~~~~~---~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~  678 (728)
                      ...-.   -...+.+.++.|..+...|+.++|+..|+.+.++..+.-|
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG  135 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG  135 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence            54321   1234556778899999999999999999999998776555

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.37  E-value=0.38  Score=53.69  Aligned_cols=231  Identities=16%  Similarity=0.105  Sum_probs=137.4

Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHH
Q 004829          232 MISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAG  311 (728)
Q Consensus       232 ~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  311 (728)
                      ....+ ++.+|+....+.++.+         |....+...-|..+.++|++++|..+++..-...     ..+    -.+
T Consensus        19 ~ld~~-qfkkal~~~~kllkk~---------Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-----~~D----~~t   79 (932)
T KOG2053|consen   19 LLDSS-QFKKALAKLGKLLKKH---------PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-----GTD----DLT   79 (932)
T ss_pred             HhhhH-HHHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-----CCc----hHH
Confidence            44454 7888888888887642         4444445557888999999999997665433221     222    224


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE  391 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  391 (728)
                      +-.+-.+|..++++++|..+|++++..        .|. -..+..+-.+|.+.+.|.+-.+.   +++++...+..... 
T Consensus        80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~pk~~yy-  146 (932)
T KOG2053|consen   80 LQFLQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNFPKRAYY-  146 (932)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCCcccch-
Confidence            788899999999999999999999988        566 56677777788888888765544   33444333322211 


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHH-HHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          392 EAADRRLMGLICDSKGDYEAALE-----HYVLASMS-MAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS  465 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g~~~~A~~-----~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  465 (728)
                         .|..+..+.......+.+..     +-++.... ....+.-...+.+. ..-.++..+|++++|.+.+..-+.  ..
T Consensus       147 ---fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~  220 (932)
T KOG2053|consen  147 ---FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLA--EK  220 (932)
T ss_pred             ---HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hh
Confidence               23334444444433333333     11111111 11111111222222 222456778999999998843322  22


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          466 AKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       466 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      .    .+............+...+++.+-.+...+++..
T Consensus       221 l----~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  221 L----TSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             c----cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            1    2223333344556677788888887777777766

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.37  E-value=0.3  Score=52.61  Aligned_cols=166  Identities=14%  Similarity=0.112  Sum_probs=88.6

Q ss_pred             CCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh----hhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829          259 GKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV----LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTA  334 (728)
Q Consensus       259 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  334 (728)
                      ..|+|..   |..+|......-.++-|...|-+.-....    +..+.-+.     --...|.+-..-|.|++|...|-.
T Consensus       688 dnPHprL---WrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s-----~~~q~aei~~~~g~feeaek~yld  759 (1189)
T KOG2041|consen  688 DNPHPRL---WRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHS-----KEQQRAEISAFYGEFEEAEKLYLD  759 (1189)
T ss_pred             cCCchHH---HHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhh-----HHHHhHhHhhhhcchhHhhhhhhc
Confidence            4566655   66677777776777777777766443210    00001111     023445555566888888877754


Q ss_pred             H------HHHHHHH--------------cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHH
Q 004829          335 G------LEIQRQV--------------LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAA  394 (728)
Q Consensus       335 a------l~~~~~~--------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~  394 (728)
                      +      ++++.++              .+.++.....++.++|..+..+..+++|.++|...-..              
T Consensus       760 ~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------------  825 (1189)
T KOG2041|consen  760 ADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------------  825 (1189)
T ss_pred             cchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------------
Confidence            3      2222221              02233445567777777777777777777776654321              


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829          395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK  458 (728)
Q Consensus       395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  458 (728)
                        -.+..+++...+|++-..+...          -|+....+-.+|.++...|-.++|.+.|-+
T Consensus       826 --e~~~ecly~le~f~~LE~la~~----------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  826 --ENQIECLYRLELFGELEVLART----------LPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             --HhHHHHHHHHHhhhhHHHHHHh----------cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence              1233444444444433222111          133344555677777777777777776643

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.36  E-value=0.037  Score=45.45  Aligned_cols=120  Identities=18%  Similarity=0.187  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHhcCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          517 IASGLIDIAAI--YQSMNELEQAVKLLNKALKIYGKTPGQQS-----TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF  589 (728)
Q Consensus       517 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  589 (728)
                      ++.+|..|+..  ....|-|++|..-+.+++++....|....     .-+.++..|+.++..+|+|++++.....++..+
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            45556555544  45568899999999999999988765432     345677889999999999999999999999998


Q ss_pred             HHhCCCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829          590 RTSGEKKS---ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG  636 (728)
Q Consensus       590 ~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  636 (728)
                      ..-++-+.   .....+.++.|.++...|+.++|+..|+.+.++..+..|
T Consensus        86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG  135 (144)
T PF12968_consen   86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG  135 (144)
T ss_dssp             HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred             hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence            87665432   334556778899999999999999999999998766544

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0052  Score=59.91  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=95.3

Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE  632 (728)
Q Consensus       553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  632 (728)
                      +.++..+.-+..-|.-|++..+|..|+..|.+++..  .  -.++...+..|.+.|-+.+..|+|..|+.-..+++.+  
T Consensus        75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--k--c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--  148 (390)
T KOG0551|consen   75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--K--CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--  148 (390)
T ss_pred             CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--c--CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            445556777778899999999999999999999875  2  2234557889999999999999999999999999999  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829          633 KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE  674 (728)
Q Consensus       633 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~  674 (728)
                            .|....+++.=|.|+..+.++.+|..+.+..+.+..
T Consensus       149 ------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  149 ------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             ------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence                  999999999999999999999999999998877643

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.28  E-value=0.0057  Score=58.11  Aligned_cols=100  Identities=13%  Similarity=0.097  Sum_probs=81.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHHH
Q 004829          572 TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY-----HHDTLGVY  646 (728)
Q Consensus       572 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~  646 (728)
                      ...+++|+..|.-|+-...-.... +...+.++..+|++|...|+.+....++++|+..+.+.+...     .-+...++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            456788888888888776555544 456788999999999999999999999999998888776432     22446688


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          647 SNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       647 ~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      +.+|.++.+.|++++|..+|.+++..
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            99999999999999999999999874

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.24  E-value=0.05  Score=55.71  Aligned_cols=178  Identities=12%  Similarity=0.065  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHcCCC
Q 004829          433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK---IGKLRDSKSYCENALKIYGKPN  509 (728)
Q Consensus       433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~  509 (728)
                      ..+..++-..|....+|+.-+.+.+..-.+-.    .+-+....+...+|.++.+   .|+.++|+..+..++.....  
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~----~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~--  214 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPT----CDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN--  214 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCc----cchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC--
Confidence            34556666778888999888887776544300    0123345566778888888   89999999999987665322  


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          510 HGIPSEEIASGLIDIAAIYQSM---------NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN  580 (728)
Q Consensus       510 ~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  580 (728)
                            ..+.++..+|.+|...         ...++|+..|.++.++.+...        .-.+++.++...|...+...
T Consensus       215 ------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y--------~GIN~AtLL~~~g~~~~~~~  280 (374)
T PF13281_consen  215 ------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY--------SGINAATLLMLAGHDFETSE  280 (374)
T ss_pred             ------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc--------chHHHHHHHHHcCCcccchH
Confidence                  2345677788877542         246788888888887753321        11366667777776444433


Q ss_pred             HHHHHH-H---HHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          581 TLKSAI-S---KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       581 ~~~~al-~---~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      -+++.. .   +..+.+.......-+.+..++.+..-.|++++|...+++++.+
T Consensus       281 el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  281 ELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            333333 1   2222222222223456667788888999999999999999987

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.22  E-value=0.014  Score=53.76  Aligned_cols=126  Identities=17%  Similarity=0.231  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829          455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL  534 (728)
Q Consensus       455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  534 (728)
                      -++.-++.++...+  ......++..+|..|.+.|+++.|++.|.++.+....      .......+..+..+....+++
T Consensus        18 ~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------~~~~id~~l~~irv~i~~~d~   89 (177)
T PF10602_consen   18 KLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------PGHKIDMCLNVIRVAIFFGDW   89 (177)
T ss_pred             HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHHHHhCCH
Confidence            33444444443322  5567788999999999999999999999998876433      456788899999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF  589 (728)
Q Consensus       535 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  589 (728)
                      .....++.++..+.... +++.........-|..++..++|.+|...|-.+...+
T Consensus        90 ~~v~~~i~ka~~~~~~~-~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen   90 SHVEKYIEKAESLIEKG-GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            99999999999888774 5554455555667888888999999999988876543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.39  Score=50.67  Aligned_cols=236  Identities=14%  Similarity=0.067  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE  391 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  391 (728)
                      .+.-+..+...|+.+.|+..+..++....+      .-...+++.+|.++..+.+|..|-..+....+...-.       
T Consensus       270 ll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS-------  336 (546)
T KOG3783|consen  270 LLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWS-------  336 (546)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhh-------
Confidence            567788888888899999999988873222      3445678889999999999999999888877654321       


Q ss_pred             HHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829          392 EAADRRLMG-LICD--------SKGDYEAALEHYVLASMSMAANGH-ELDVASIDCSIGDAYLSLARFDEAIFSYHKALT  461 (728)
Q Consensus       392 ~a~~~~~lg-~~~~--------~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  461 (728)
                      .+ .|..++ .++.        ..|+-+.|..+++....+....+. .|.. ..                   ..+++-.
T Consensus       337 ~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E-~f-------------------~~RKver  395 (546)
T KOG3783|consen  337 HA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLE-KF-------------------IVRKVER  395 (546)
T ss_pred             HH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchh-HH-------------------HHHHHHH
Confidence            11 233333 3332        133555555555544444333221 1111 01                   1111111


Q ss_pred             HHHHhcCCCCHHH--HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH
Q 004829          462 AFKSAKGENHPAV--ASVFVRLADLYHKIG--KLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA  537 (728)
Q Consensus       462 ~~~~~~~~~~~~~--~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  537 (728)
                      ..... . -.+..  +..+..++.++....  ...+..    ++....+... -.+..+..--+..+|.++..+|+...|
T Consensus       396 f~~~~-~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~-~~d~Dd~~lk~lL~g~~lR~Lg~~~~a  468 (546)
T KOG3783|consen  396 FVKRG-P-LNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPK-IDDSDDEGLKYLLKGVILRNLGDSEVA  468 (546)
T ss_pred             Hhccc-c-ccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccC-CCCchHHHHHHHHHHHHHHHcCCHHHH
Confidence            11100 0 00000  001233333322211  122222    2222222221 114455666778899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 004829          538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN-YSDSYNTLKSAISK  588 (728)
Q Consensus       538 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~  588 (728)
                      ..+|..+++-......+....+.+++.+|.+|..++. ..++..++.+|-+.
T Consensus       469 ~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~  520 (546)
T KOG3783|consen  469 PKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY  520 (546)
T ss_pred             HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence            9999998876554445555677889999999999999 99999999998765

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.20  E-value=0.23  Score=51.06  Aligned_cols=207  Identities=11%  Similarity=0.016  Sum_probs=124.1

Q ss_pred             hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Q 004829          446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIA  525 (728)
Q Consensus       446 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la  525 (728)
                      ...+..+...+.+.+...+..++...-....+..++-..|....+|+.=+.+.+..-.+-     ..+......+....|
T Consensus       112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p-----~~~~~~~~~i~~~ya  186 (374)
T PF13281_consen  112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP-----TCDVANQHNIKFQYA  186 (374)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC-----ccchhcchHHHHHHH
Confidence            444444555566666665555443233345566777778999999988888877655441     111233445566778


Q ss_pred             HHHHH---cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhC
Q 004829          526 AIYQS---MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMT---------GNYSDSYNTLKSAISKFRTSG  593 (728)
Q Consensus       526 ~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~  593 (728)
                      .++.+   .|+.++|+..+..++.....      ..+.++..+|.+|...         ...++|+..|.++.++-    
T Consensus       187 fALnRrn~~gdre~Al~il~~~l~~~~~------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~----  256 (374)
T PF13281_consen  187 FALNRRNKPGDREKALQILLPVLESDEN------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE----  256 (374)
T ss_pred             HHHhhcccCCCHHHHHHHHHHHHhccCC------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC----
Confidence            88888   89999999999887543221      2245666777777432         23566777777776652    


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEY----GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV  669 (728)
Q Consensus       594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a  669 (728)
                         +.  ...-.+++.++...|...+...-.++....+....    ........+.+..++.+....|++++|..+++++
T Consensus       257 ---~~--~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~  331 (374)
T PF13281_consen  257 ---PD--YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA  331 (374)
T ss_pred             ---cc--ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               11  12234455566666653333333333331111111    1122234455667888888999999999999999


Q ss_pred             HHH
Q 004829          670 VGM  672 (728)
Q Consensus       670 l~~  672 (728)
                      +.+
T Consensus       332 ~~l  334 (374)
T PF13281_consen  332 FKL  334 (374)
T ss_pred             hhc
Confidence            985

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.012  Score=54.86  Aligned_cols=105  Identities=17%  Similarity=0.149  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC---cH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK---SA-------LFGIALNQMGLACVQRYTINEAADLFEEART  629 (728)
Q Consensus       560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  629 (728)
                      .++..-|.-++.+|+|.+|...|+.|+..++.+.-..   .+       .....+.+++.|++..|+|-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            3456778899999999999999999999887653211   11       1234678899999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      .        +|....+|+..|.+....=+..+|..-|.+++++
T Consensus       259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            8        9999999999999999999999999999999984

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.19  E-value=0.36  Score=49.69  Aligned_cols=142  Identities=9%  Similarity=-0.003  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhH-hHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Q 004829          269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHAL-AKFAGCM-QLGDTYAMLGQIENSILCYTAGLEIQRQVLGET  346 (728)
Q Consensus       269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  346 (728)
                      +...|.++..++++.+|...|.++..-..     ..+. ..-.++. .+-.+| -++    .+...+..+...++.    
T Consensus         9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~-----~~~f~lkeEvl~grilnAf-fl~----nld~Me~~l~~l~~~----   74 (549)
T PF07079_consen    9 LCFQGFILQKQKKFQESEKIFSKIYDEKE-----SSPFLLKEEVLGGRILNAF-FLN----NLDLMEKQLMELRQQ----   74 (549)
T ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHHHHhh-----cchHHHHHHHHhhHHHHHH-HHh----hHHHHHHHHHHHHHh----
Confidence            44568899999999999999999876531     1111 1111222 222333 233    344444444444444    


Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS-------IEEAADRRLMGLICDSKGDYEAALEHYVLA  419 (728)
Q Consensus       347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a  419 (728)
                      .|.........|...++.+.|.+|++.+..-.........+..       ......-...+.++...|.+.++...+++.
T Consensus        75 ~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i  154 (549)
T PF07079_consen   75 FGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI  154 (549)
T ss_pred             cCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            3444455666788889999999999887766544322221100       000111234577888999999999999988


Q ss_pred             HHHHH
Q 004829          420 SMSMA  424 (728)
Q Consensus       420 l~~~~  424 (728)
                      +..+-
T Consensus       155 ~~~ll  159 (549)
T PF07079_consen  155 IERLL  159 (549)
T ss_pred             HHHHh
Confidence            76543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.16  E-value=0.9  Score=56.34  Aligned_cols=359  Identities=10%  Similarity=-0.008  Sum_probs=180.5

Q ss_pred             HHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchh-HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChH
Q 004829          271 VLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA-LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHR  349 (728)
Q Consensus       271 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  349 (728)
                      .+|.+-++.+.|.+|+.++++- ..      .+.. ...-..++.+-.+|...++++.-.-....-..         +|.
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~------~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---------~~s 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RS------TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---------DPS 1451 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-cc------ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---------Ccc
Confidence            6788889999999999999984 11      1111 11122355666689999998876655543110         222


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 004829          350 VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE  429 (728)
Q Consensus       350 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  429 (728)
                          +...-..+...|++..|..+|++++...+.....        +...-......|.+...+...+-...     . .
T Consensus      1452 ----l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~--------~~g~l~sml~~~~l~t~i~~~dg~~~-----~-~ 1513 (2382)
T KOG0890|consen 1452 ----LYQQILEHEASGNWADAAACYERLIQKDPDKEKH--------HSGVLKSMLAIQHLSTEILHLDGLII-----N-R 1513 (2382)
T ss_pred             ----HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccc--------hhhHHHhhhcccchhHHHhhhcchhh-----c-c
Confidence                2233345667899999999999999776553211        22222333444555555443322110     0 1


Q ss_pred             hhHHHHHHHHH-HHHHHhCCHHHHHHHHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHH----------HHHcCCh
Q 004829          430 LDVASIDCSIG-DAYLSLARFDEAIFSYH-------KALTAFKSAKGENHPAVASVFVRLADL----------YHKIGKL  491 (728)
Q Consensus       430 ~~~~~~~~~la-~~~~~~g~~~~A~~~~~-------~al~~~~~~~~~~~~~~~~~~~~la~~----------~~~~g~~  491 (728)
                      .+...-+++++ .+.+..++++.-..+..       .+..+..-.+.....+....+..+...          ....|-|
T Consensus      1514 se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy 1593 (2382)
T KOG0890|consen 1514 SEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSY 1593 (2382)
T ss_pred             CHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchH
Confidence            11111111111 12244444444333311       000000000000000000000000000          0011123


Q ss_pred             HHHHHHHHHHHH---------HHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHH
Q 004829          492 RDSKSYCENALK---------IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIE  562 (728)
Q Consensus       492 ~~A~~~~~~al~---------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  562 (728)
                      ..+.++.-+...         ...+..++.+......-|.+....-....+..+-+-.+++++-.....++....++.+|
T Consensus      1594 ~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~w 1673 (2382)
T KOG0890|consen 1594 VRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECW 1673 (2382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHH
Confidence            333333222211         11111111111111122222222211222244445555666555544445667889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CC--CC
Q 004829          563 AQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEY-GP--YH  639 (728)
Q Consensus       563 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~--~~  639 (728)
                      ...|.+....|+++.|..++-.|.+..          .+.++...|..+...|+-..|+..+++.+....... ++  +.
T Consensus      1674 LqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence            999999999999999999988887651          356888899999999999999999999997654321 11  01


Q ss_pred             hh------HHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHH
Q 004829          640 HD------TLGVYSNLAGTYDAMGRI--DDAIEILEYVVGMR  673 (728)
Q Consensus       640 ~~------~~~~~~~La~~~~~~g~~--~~A~~~~~~al~~~  673 (728)
                      |.      ...+...++......|++  .+-+.+|..+.++.
T Consensus      1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred             chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence            11      122344455555555653  34455666666654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.013  Score=54.59  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-----CCCh-------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004829          394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAAN-----GHEL-------DVASIDCSIGDAYLSLARFDEAIFSYHKALT  461 (728)
Q Consensus       394 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  461 (728)
                      .++..-|+-++..|+|.+|...|..|+......     +..|       .....+.+++.|+...|+|-+++++....|.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            357778999999999999999999998655322     2222       2345688999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          462 AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      .        +|.+..+|+..|.++...-+.++|...|.+++++
T Consensus       259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            8        9999999999999999999999999999999998

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.11  E-value=0.031  Score=49.97  Aligned_cols=108  Identities=19%  Similarity=0.126  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchh-------------HhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA-------------LAKFAGCMQLGDTYAMLGQIENSILCYTAG  335 (728)
Q Consensus       269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  335 (728)
                      +...|......|+...++..+++++.+.....-+..+             ...+.++..++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3344666667788899999999999887422211110             113345678888899999999999999999


Q ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 004829          336 LEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN  384 (728)
Q Consensus       336 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  384 (728)
                      +..        +|..-.++..+-.+|...|+...|+..|++......+.
T Consensus        89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e  129 (146)
T PF03704_consen   89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE  129 (146)
T ss_dssp             HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence            999        89999999999999999999999999999998877654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.06  E-value=0.025  Score=52.10  Aligned_cols=125  Identities=13%  Similarity=0.119  Sum_probs=95.3

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHH
Q 004829          416 YVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSK  495 (728)
Q Consensus       416 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  495 (728)
                      ++.-+.-+..+.....+..++..+|..|...|+++.|++.|.++.+.+.     ........++.+..+....+++....
T Consensus        19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~   93 (177)
T PF10602_consen   19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVE   93 (177)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            3333444444555667778899999999999999999999999877632     24456778888999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          496 SYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY  548 (728)
Q Consensus       496 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  548 (728)
                      .++.++-.+.....   +..........-|..+...++|..|...|-.+...+
T Consensus        94 ~~i~ka~~~~~~~~---d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen   94 KYIEKAESLIEKGG---DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            99999999887732   334444555666777888899999998887765433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.02  E-value=0.0012  Score=44.88  Aligned_cols=42  Identities=21%  Similarity=0.158  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004829          602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAG  651 (728)
Q Consensus       602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~  651 (728)
                      .++..+|.+|...|++++|+..|+++++.        +|+...++..||.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            46788999999999999999999999999        8888888888875

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.00  E-value=0.0086  Score=56.92  Aligned_cols=100  Identities=18%  Similarity=0.142  Sum_probs=80.9

Q ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-----CcHHHHHHHH
Q 004829          531 MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK-----KSALFGIALN  605 (728)
Q Consensus       531 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~  605 (728)
                      ...+++|+..|.-|+-...-........+.++..+|++|..+|+.+....++++|+..+.+....     .......+++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            45678899999888877765545556788899999999999999998888888888887765221     1223457888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          606 QMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       606 ~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      .+|.+..+.|++++|..+|.+++..
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            9999999999999999999998875

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.95  E-value=0.0083  Score=53.69  Aligned_cols=86  Identities=21%  Similarity=0.239  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004829          575 YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY----------TINEAADLFEEARTILEKEYGPYHHDTLG  644 (728)
Q Consensus       575 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~  644 (728)
                      |+.|.+.++.....        +|..+..+++-|.++..+.          .+++|+.-|++|+.+        +|+...
T Consensus         7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hd   70 (186)
T PF06552_consen    7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHD   70 (186)
T ss_dssp             HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HH
T ss_pred             HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHH
Confidence            34455555555444        3334667777777776653          355666667777777        888999


Q ss_pred             HHHHHHHHHHHcC----ChHHHHHHHHHHHHHHHHH
Q 004829          645 VYSNLAGTYDAMG----RIDDAIEILEYVVGMREEK  676 (728)
Q Consensus       645 ~~~~La~~~~~~g----~~~~A~~~~~~al~~~~~~  676 (728)
                      +++++|.+|..++    +..+|..+|++|...+++.
T Consensus        71 Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA  106 (186)
T PF06552_consen   71 ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA  106 (186)
T ss_dssp             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence            9999999998765    3445666666665555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.95  E-value=0.081  Score=48.07  Aligned_cols=101  Identities=14%  Similarity=0.024  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829          393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP  472 (728)
Q Consensus       393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  472 (728)
                      ..+...++..+...|++++|+..++.++..   ..+......+-.+||.+...+|.+++|+..+...-.         +.
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~  156 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ES  156 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------cc
Confidence            344567888999999999999999987643   233444566778999999999999999988765533         44


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIY  505 (728)
Q Consensus       473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  505 (728)
                      .........|.++...|+-++|+..|++++...
T Consensus       157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         157 WAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            456667778999999999999999999999884

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.81  Score=49.10  Aligned_cols=106  Identities=13%  Similarity=0.154  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC
Q 004829          222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG  301 (728)
Q Consensus       222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  301 (728)
                      -..|.+.|...+.. ++|..++++|...+..+...   ..+...+.....++.||..+.+.+.|.+++++|-+..     
T Consensus       354 H~iLWn~A~~~F~~-~~Y~~s~~~y~~Sl~~i~~D---~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-----  424 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKM-EKYVVSIRFYKLSLKDIISD---NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-----  424 (872)
T ss_pred             HHHHHHhhHHHHHH-HHHHHHHHHHHHHHHhccch---hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-----
Confidence            34567778888888 49999999999999876432   2234567788899999999999999999999998764     


Q ss_pred             CchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          302 QDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQR  340 (728)
Q Consensus       302 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  340 (728)
                      +..+..    ...+-.+....|.-++|+.+.........
T Consensus       425 ~~~~l~----q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  425 RQSPLC----QLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             cccHHH----HHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            333332    45566677778999999999888776643

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.87  E-value=0.0024  Score=43.49  Aligned_cols=41  Identities=24%  Similarity=0.313  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004829          311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAE  359 (728)
Q Consensus       311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  359 (728)
                      +++.+|.+|...|++++|+.+|+++++.        +|+...++..+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            4889999999999999999999999999        7888888888875

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.85  E-value=1.2  Score=50.00  Aligned_cols=215  Identities=18%  Similarity=0.105  Sum_probs=124.6

Q ss_pred             cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHH
Q 004829          210 DPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVL  289 (728)
Q Consensus       210 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  289 (728)
                      +.......+|+..-+..-.|..+++.| ..++|..+.+.. ..      ..  +..-..+..+-.+|..++++++|..+|
T Consensus        31 ~~~kllkk~Pn~~~a~vLkaLsl~r~g-k~~ea~~~Le~~-~~------~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Y  100 (932)
T KOG2053|consen   31 KLGKLLKKHPNALYAKVLKALSLFRLG-KGDEALKLLEAL-YG------LK--GTDDLTLQFLQNVYRDLGKLDEAVHLY  100 (932)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHhc-CchhHHHHHhhh-cc------CC--CCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence            334455678888888888999999997 899999555443 22      11  113445777899999999999999999


Q ss_pred             HHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHH-HHHHHHHHHHHhCCHH
Q 004829          290 ERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGE-TCRYVAEAHVQSLQFD  368 (728)
Q Consensus       290 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~  368 (728)
                      ++++..+     +..     ..++.+-.+|.+.+.|.+-.+.   ++++++.     -|..+. .|.-+..+.......+
T Consensus       101 e~~~~~~-----P~e-----ell~~lFmayvR~~~yk~qQka---a~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~  162 (932)
T KOG2053|consen  101 ERANQKY-----PSE-----ELLYHLFMAYVREKSYKKQQKA---ALQLYKN-----FPKRAYYFWSVISLILQSIFSEN  162 (932)
T ss_pred             HHHHhhC-----CcH-----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHh-----CCcccchHHHHHHHHHHhccCCc
Confidence            9999765     221     2366677777777777654333   3333332     222222 2222333333222222


Q ss_pred             H---------HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004829          369 E---------AEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSI  439 (728)
Q Consensus       369 ~---------A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  439 (728)
                      .         |...+++.++.   .+.......+   ...-.++..+|++++|.+.+..-+  ....  .+.........
T Consensus       163 ~~~~~i~l~LA~~m~~~~l~~---~gk~~s~aE~---~Lyl~iL~~~~k~~eal~~l~~~l--a~~l--~~~~~~l~~~~  232 (932)
T KOG2053|consen  163 ELLDPILLALAEKMVQKLLEK---KGKIESEAEI---ILYLLILELQGKYQEALEFLAITL--AEKL--TSANLYLENKK  232 (932)
T ss_pred             ccccchhHHHHHHHHHHHhcc---CCccchHHHH---HHHHHHHHhcccHHHHHHHHHHHH--HHhc--cccchHHHHHH
Confidence            2         23333333322   1111112222   222346677899999999885332  1111  12222333445


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHH
Q 004829          440 GDAYLSLARFDEAIFSYHKALTA  462 (728)
Q Consensus       440 a~~~~~~g~~~~A~~~~~~al~~  462 (728)
                      ...+...++|.+-.+...+++..
T Consensus       233 ~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  233 LDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHh
Confidence            66777788888888777777765

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.83  E-value=0.00093  Score=42.35  Aligned_cols=34  Identities=26%  Similarity=0.467  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 004829          623 LFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE  664 (728)
Q Consensus       623 ~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~  664 (728)
                      +|++|+++        +|+...++++||.+|...|++++|++
T Consensus         1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            47889999        99999999999999999999999963

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.82  E-value=0.028  Score=45.76  Aligned_cols=81  Identities=16%  Similarity=0.181  Sum_probs=64.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcCCCh---hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004829          402 ICDSKGDYEAALEHYVLASMSMAANGHEL---DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVF  478 (728)
Q Consensus       402 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  478 (728)
                      .....|+|..|++.+.+............   ....++.++|.++...|++++|+..+++++.+.++.  .|......++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al   84 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYAL   84 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHH
Confidence            34578999999999999988877666555   567788899999999999999999999999999987  3445555555


Q ss_pred             HHHHHH
Q 004829          479 VRLADL  484 (728)
Q Consensus       479 ~~la~~  484 (728)
                      ..+..+
T Consensus        85 ~~~~~l   90 (94)
T PF12862_consen   85 SWLANL   90 (94)
T ss_pred             HHHHHH
Confidence            555544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.73  E-value=0.0044  Score=39.33  Aligned_cols=30  Identities=23%  Similarity=0.248  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      +.+++.+|.+|..+|++++|+.+|++++++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            357899999999999999999999999998

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.65  E-value=0.041  Score=44.73  Aligned_cols=83  Identities=17%  Similarity=0.107  Sum_probs=68.0

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004829          361 HVQSLQFDEAEKICQMALDIHRENTSPA-SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSI  439 (728)
Q Consensus       361 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  439 (728)
                      ....|+|..|++.+.+..+......... ......++..+|.++...|++++|+..+++++.+.+..++......++..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~   87 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL   87 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            4578999999999999999887776543 123345678899999999999999999999999999999888887777776


Q ss_pred             HHHH
Q 004829          440 GDAY  443 (728)
Q Consensus       440 a~~~  443 (728)
                      ..+.
T Consensus        88 ~~l~   91 (94)
T PF12862_consen   88 ANLL   91 (94)
T ss_pred             HHHh
Confidence            6553

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.63  E-value=0.031  Score=56.08  Aligned_cols=136  Identities=12%  Similarity=0.088  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829          395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS-LARFDEAIFSYHKALTAFKSAKGENHPA  473 (728)
Q Consensus       395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~  473 (728)
                      +|..+.....+.+..+.|...|.+|+      ........+|...|.+-+. .++.+.|...|+.+++.        .+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~------~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f~~   68 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRAR------KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------FPS   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------HTT
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHH------cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCC
Confidence            35556666677777999999999886      2233445678888888777 56666699999999988        444


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          474 VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      ....+......+...++.+.|..+|++++.....      ......+|......-...|+.+....+.+++.+.++.
T Consensus        69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            5566777778889999999999999999876321      2214567777888888899999999999999988765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.55  E-value=0.0062  Score=39.22  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829          645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREE  675 (728)
Q Consensus       645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~~  675 (728)
                      ++.+||.+|..+|++++|+.+|++++.+...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4789999999999999999999999877643

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.51  E-value=0.0068  Score=38.43  Aligned_cols=30  Identities=33%  Similarity=0.614  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829          433 ASIDCSIGDAYLSLARFDEAIFSYHKALTA  462 (728)
Q Consensus       433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  462 (728)
                      +.+|+++|.+|..+|++++|+..|++++++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            357888999999999999999999999887

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.43  E-value=0.0024  Score=40.50  Aligned_cols=33  Identities=30%  Similarity=0.550  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHH
Q 004829          455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSK  495 (728)
Q Consensus       455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  495 (728)
                      +|++++++        +|....++++||.+|...|++++|+
T Consensus         1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            37889998        9999999999999999999999986

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.42  E-value=0.74  Score=49.36  Aligned_cols=221  Identities=14%  Similarity=0.180  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH-----H------HHcCC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          354 CRYVAEAHVQSLQFDEAEKICQMALDI-----H------RENTS-PASIEEAADRRLMGLICDSKGDYEAALEHYVLASM  421 (728)
Q Consensus       354 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~------~~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  421 (728)
                      |..||.-....-+++-|.+.|.+..++     .      .+.+. ++       -..++.++...|+|.+|.+.|.+.  
T Consensus       588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-------~iLlA~~~Ay~gKF~EAAklFk~~--  658 (1081)
T KOG1538|consen  588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-------DLLLADVFAYQGKFHEAAKLFKRS--  658 (1081)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-------HHHHHHHHHhhhhHHHHHHHHHHc--
Confidence            555666666666777777776655321     1      11111 11       235677778888888888877643  


Q ss_pred             HHHhcCCChhHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHH
Q 004829          422 SMAANGHELDVAS-----IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKS  496 (728)
Q Consensus       422 ~~~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  496 (728)
                           +.......     -.+.++.-++..|..++-..+.++-.+-+...   ..|..      -|.++...|+.++|+.
T Consensus       659 -----G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---kePka------AAEmLiSaGe~~KAi~  724 (1081)
T KOG1538|consen  659 -----GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---KEPKA------AAEMLISAGEHVKAIE  724 (1081)
T ss_pred             -----CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---CCcHH------HHHHhhcccchhhhhh
Confidence                 11111111     12344555555565555555544443333322   12322      3566777888888876


Q ss_pred             HH------HHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH
Q 004829          497 YC------ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYY  570 (728)
Q Consensus       497 ~~------~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  570 (728)
                      ..      +-++++.+++.     ......+..++..+.....+.-|.+.|.+.-.+               ..+..++.
T Consensus       725 i~~d~gW~d~lidI~rkld-----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------------ksiVqlHv  784 (1081)
T KOG1538|consen  725 ICGDHGWVDMLIDIARKLD-----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------------KSLVQLHV  784 (1081)
T ss_pred             hhhcccHHHHHHHHHhhcc-----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------------HHHhhhee
Confidence            43      33455544432     222334444555555555555555555543211               13455666


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEAR  628 (728)
Q Consensus       571 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  628 (728)
                      ..++|.+|..+.++-           +.....+++..|+.+....++++|.+.|.+|-
T Consensus       785 e~~~W~eAFalAe~h-----------Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG  831 (1081)
T KOG1538|consen  785 ETQRWDEAFALAEKH-----------PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG  831 (1081)
T ss_pred             ecccchHhHhhhhhC-----------ccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence            778888876655443           22234556666777777777777777776553

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=96.41  E-value=1  Score=44.20  Aligned_cols=221  Identities=10%  Similarity=-0.022  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChh-HHHHH-HHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829          225 LLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLE-QVMCL-HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ  302 (728)
Q Consensus       225 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~-~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  302 (728)
                      -+++.++++..| ++.+|+..+++=+..+........... ....+ ..++.-|.      ---++++++..........
T Consensus        13 ~~ki~rl~l~~~-~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~------~fAeL~~~~~~~~l~~~~~   85 (247)
T PF11817_consen   13 AFKICRLYLWLN-QPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQ------VFAELLEEAPISGLTPPST   85 (247)
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHH------HHHHHHHhcccccCCCCCC
Confidence            466788899996 899999999999888877754311111 11111 22333322      2223444444221111112


Q ss_pred             chhHhHHHHHHHHHHHHHHhCCHHHHHHHH---H--HHHHHHHHHcCC----CChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 004829          303 DHALAKFAGCMQLGDTYAMLGQIENSILCY---T--AGLEIQRQVLGE----TDHRVGETCRYVAEAHVQSLQFDEAEKI  373 (728)
Q Consensus       303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---~--~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~  373 (728)
                      .+|-    .|+..+..+... +...|....   .  .+-.+....++.    ..|.....+............-...+.+
T Consensus        86 ~~pG----~yy~~AA~~~~~-Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~l  160 (247)
T PF11817_consen   86 QHPG----FYYQIAAKHAVE-RRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIEL  160 (247)
T ss_pred             CCcc----hHHHHHHHHHHH-HHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHH
Confidence            2222    244444443321 112222211   0  000000000000    1111222222222111223344567888


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHH
Q 004829          374 CQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAI  453 (728)
Q Consensus       374 ~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  453 (728)
                      +.+|+..+......  -....+...+|..|+..|++++|+.+|+.+...++..+.......++..+..|+...|+.+..+
T Consensus       161 L~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l  238 (247)
T PF11817_consen  161 LEKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL  238 (247)
T ss_pred             HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            89998888776642  2334456789999999999999999999998888888888888899999999999999999887


Q ss_pred             HHHHHH
Q 004829          454 FSYHKA  459 (728)
Q Consensus       454 ~~~~~a  459 (728)
                      .+.-+.
T Consensus       239 ~~~leL  244 (247)
T PF11817_consen  239 TTSLEL  244 (247)
T ss_pred             HHHHHH
Confidence            765544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.41  E-value=1.8  Score=46.52  Aligned_cols=392  Identities=14%  Similarity=0.056  Sum_probs=220.5

Q ss_pred             cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhh
Q 004829          214 AGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSV  293 (728)
Q Consensus       214 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  293 (728)
                      ....-|..-..+..-|..-+..| ..+.++..|++++..++..        .......++.+--..|+.+.-...|++|.
T Consensus        71 fL~kyPl~~gyW~kfA~~E~klg-~~~~s~~Vfergv~aip~S--------vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~  141 (577)
T KOG1258|consen   71 FLSKYPLCYGYWKKFADYEYKLG-NAENSVKVFERGVQAIPLS--------VDLWLSYLAFLKNNNGDPETLRDLFERAK  141 (577)
T ss_pred             HHhhCccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            34456777777888888888897 8999999999999876432        11122234444446677778888888888


Q ss_pred             hhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH--HHHhCCHHHHH
Q 004829          294 EIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEA--HVQSLQFDEAE  371 (728)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~  371 (728)
                      .......-. ++     .|-..-..-..++++..-...|++.++.-...+    +....-+..+..-  .......+++.
T Consensus       142 ~~vG~dF~S-~~-----lWdkyie~en~qks~k~v~~iyeRileiP~~~~----~~~f~~f~~~l~~~~~~~l~~~d~~~  211 (577)
T KOG1258|consen  142 SYVGLDFLS-DP-----LWDKYIEFENGQKSWKRVANIYERILEIPLHQL----NRHFDRFKQLLNQNEEKILLSIDELI  211 (577)
T ss_pred             Hhcccchhc-cH-----HHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh----HHHHHHHHHHHhcCChhhhcCHHHHH
Confidence            765321111 11     122223333556777777778887777622110    0011111111100  00011222222


Q ss_pred             HHHHHHHH----------------HHHHcCCC-CcHHHHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhcC
Q 004829          372 KICQMALD----------------IHRENTSP-ASIEEAAD-----RRLMGLICDSKGDYEAALEHYVLASMSM--AANG  427 (728)
Q Consensus       372 ~~~~~al~----------------~~~~~~~~-~~~~~a~~-----~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~  427 (728)
                      +.-.....                .......+ ........     ....-.++...-...+.+..++..+...  ...+
T Consensus       212 ~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkp  291 (577)
T KOG1258|consen  212 QLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKP  291 (577)
T ss_pred             HHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCc
Confidence            22111111                00000000 00000100     0001112222222333333333333211  1122


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      ..+.....|......-...|+++...-.|++++--        .......|...+......|+.+-|...+..+.++..+
T Consensus       292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k  363 (577)
T KOG1258|consen  292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--------CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK  363 (577)
T ss_pred             ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC
Confidence            33444566777777888999999999999999876        4455677888888888889999999999999988644


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS  587 (728)
Q Consensus       508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  587 (728)
                              ....+...-+.+....|++..|...++....-++..       ..+-..-.....+.|+.+.+.. +...+.
T Consensus       364 --------~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~-------v~~~l~~~~~e~r~~~~~~~~~-~~~l~s  427 (577)
T KOG1258|consen  364 --------KTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL-------VEVVLRKINWERRKGNLEDANY-KNELYS  427 (577)
T ss_pred             --------CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-------hhhHHHHHhHHHHhcchhhhhH-HHHHHH
Confidence                    234556666778888999999999999888765322       2222334455667788877764 333333


Q ss_pred             HHHHhCCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004829          588 KFRTSGEKKSALFGIALNQMGLAC-VQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG  657 (728)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g  657 (728)
                      .... +..+.......+...++.. .-.++.+.|...+.+++++        .|.....+..+..+....+
T Consensus       428 ~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  428 SIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             Hhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHHHHHHHHHHhCC
Confidence            2221 2222333445555566543 3457899999999999988        6666666666666555544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.16  Score=49.40  Aligned_cols=155  Identities=16%  Similarity=0.132  Sum_probs=96.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q 004829          522 IDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG  601 (728)
Q Consensus       522 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  601 (728)
                      ...+.-....|++.+|...|..++...++.       ..+...++.+|...|+.+.|...+...=.-.       ...-.
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------~~~~~  203 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQA-------QDKAA  203 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccc-------hhhHH
Confidence            344556778899999999999999987766       3466789999999999999987776532110       00001


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004829          602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTAN  681 (728)
Q Consensus       602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  681 (728)
                      ..+...-.++.+.....+... +++.+..        +|+...+.+.||..|...|+.++|++.+-..+..   -.+.. 
T Consensus       204 ~~l~a~i~ll~qaa~~~~~~~-l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~~-  270 (304)
T COG3118         204 HGLQAQIELLEQAAATPEIQD-LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGFE-  270 (304)
T ss_pred             HHHHHHHHHHHHHhcCCCHHH-HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccccc-
Confidence            111111122222222222211 2222222        7878889999999999999999999887666553   22222 


Q ss_pred             hHHHHHHHHHHHHHHHhCChhHHH
Q 004829          682 PDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       682 p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                        ...+...|-.++...|..+.+.
T Consensus       271 --d~~~Rk~lle~f~~~g~~Dp~~  292 (304)
T COG3118         271 --DGEARKTLLELFEAFGPADPLV  292 (304)
T ss_pred             --CcHHHHHHHHHHHhcCCCCHHH
Confidence              2345556666666666555544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.39  E-value=0.017  Score=51.78  Aligned_cols=93  Identities=16%  Similarity=0.178  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004829          617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI---DDAIEILEYVVGMREEKLGTANPDVEDEKRRLAE  693 (728)
Q Consensus       617 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~  693 (728)
                      ++.|.+.++.....        +|...+.+++-|.++..+.++   .++..+++.++.-+++.+. -+|+..++++.+|.
T Consensus         7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence            56677777776666        788888888888888776443   3455555555555444433 35888999999999


Q ss_pred             HHHHhCC-----------hhHHHHHHHHHHHhhcccc
Q 004829          694 LLKEAGR-----------VRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       694 ~~~~~g~-----------~~~A~~~~l~~ll~~~~~~  719 (728)
                      +|..++.           +++|. .+++.+.+.+|.+
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~-~~FqkAv~~~P~n  113 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKAT-EYFQKAVDEDPNN  113 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHH-HHHHHHHHH-TT-
T ss_pred             HHHHHHhhcCChHHHHHHHHHHH-HHHHHHHhcCCCc
Confidence            9998765           55566 7777777777764

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.37  E-value=0.0093  Score=37.73  Aligned_cols=29  Identities=31%  Similarity=0.281  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          602 IALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      .+++.+|.++...|++++|+.+|++++.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999998

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.34  E-value=0.0088  Score=37.84  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      +.++..+|.++..+|++++|+.+|++++.+.++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            357899999999999999999999999998764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.32  E-value=0.011  Score=38.00  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q 004829          353 TCRYVAEAHVQSLQFDEAEKICQMALDIHRENT  385 (728)
Q Consensus       353 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  385 (728)
                      ++..||.+|...|+|++|+.+|++++.+.....
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~   33 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE   33 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            478899999999999999999999997766543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.25  E-value=2.2  Score=45.95  Aligned_cols=152  Identities=8%  Similarity=-0.031  Sum_probs=82.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHH------HHHHHHHHHhcCCC
Q 004829          397 RLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSY------HKALTAFKSAKGEN  470 (728)
Q Consensus       397 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~  470 (728)
                      +.++.-+...|..++-..+.++-..-+..... |.      .-|.++...|+.++|+...      +-++++.++.    
T Consensus       674 FD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke-Pk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----  742 (1081)
T KOG1538|consen  674 FDYAQEFLGSGDPKEKKMLIRKRADWARNIKE-PK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----  742 (1081)
T ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHHhhhcCC-cH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----
Confidence            34444555555555444444433222222222 11      1244566667777776543      3344444443    


Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      +......+..++..+..+..+.-|.+.|.+.-++                 ..+..++...+++.+|..+.++--+..  
T Consensus       743 d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-----------------ksiVqlHve~~~W~eAFalAe~hPe~~--  803 (1081)
T KOG1538|consen  743 DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-----------------KSLVQLHVETQRWDEAFALAEKHPEFK--  803 (1081)
T ss_pred             chhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----------------HHHhhheeecccchHhHhhhhhCcccc--
Confidence            3344445555666666666666666666553222                 224456677788888876655432222  


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAI  586 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  586 (728)
                              ..+|+-.|..+....+|++|.+.|.+|-
T Consensus       804 --------~dVy~pyaqwLAE~DrFeEAqkAfhkAG  831 (1081)
T KOG1538|consen  804 --------DDVYMPYAQWLAENDRFEEAQKAFHKAG  831 (1081)
T ss_pred             --------ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence                    2345566777788888888887776653

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.24  E-value=0.037  Score=55.54  Aligned_cols=136  Identities=10%  Similarity=0.027  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ-RYTINEAADLFEEARTILEKEYGPYH  639 (728)
Q Consensus       561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  639 (728)
                      +|..+.....+.+..+.|...|.+|++.        ......+|...|.+.+. .++.+.|...|+.+++.        .
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f   66 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------F   66 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------H
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------C
Confidence            4555667777777799999999999632        11123567778888666 56777799999999998        4


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                      +.....+......+...|+.+.|..+|++++...     +.......++......-...|+.+... +..+.+.+..+.
T Consensus        67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~-~v~~R~~~~~~~  139 (280)
T PF05843_consen   67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVR-KVEKRAEELFPE  139 (280)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhh
Confidence            5555667777788889999999999999998742     111113467777888888899888777 666666655444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.15  E-value=0.46  Score=46.39  Aligned_cols=132  Identities=19%  Similarity=0.110  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829          223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ  302 (728)
Q Consensus       223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  302 (728)
                      ..-+..+..+...| ++.+|...+..++...         ++...+...++.||...|+.+.|...+...-.-.     .
T Consensus       135 e~~~~~~~~~~~~e-~~~~a~~~~~~al~~~---------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-----~  199 (304)
T COG3118         135 EEALAEAKELIEAE-DFGEAAPLLKQALQAA---------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-----Q  199 (304)
T ss_pred             HHHHHHhhhhhhcc-chhhHHHHHHHHHHhC---------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-----h
Confidence            34566677888886 9999999999999874         3335567789999999999999999987643211     1


Q ss_pred             chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829          303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH  381 (728)
Q Consensus       303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  381 (728)
                      ............+..-....++...    +++.+..        +|....+-+.+|..+...|+++.|.+.+-..+...
T Consensus       200 ~~~~~~l~a~i~ll~qaa~~~~~~~----l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d  266 (304)
T COG3118         200 DKAAHGLQAQIELLEQAAATPEIQD----LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRRD  266 (304)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHH----HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            1111001111222222222233222    2222222        78888899999999999999999998877766544

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.95  E-value=0.0069  Score=62.39  Aligned_cols=110  Identities=17%  Similarity=0.133  Sum_probs=93.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004829          563 AQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDT  642 (728)
Q Consensus       563 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  642 (728)
                      -.-+.-++..+.|+.|+..|.+|+++        ++..+..+.+.+.+++..+++..|+.-+.+|+++        +|..
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~   71 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY   71 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence            34566778889999999999999998        5666778888899999999999999999999999        8999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829          643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLK  696 (728)
Q Consensus       643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~  696 (728)
                      ..+|+..|.++...+.+.+|+..|+....+.        |....+...+.++-.
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~--------Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLA--------PNDPDATRKIDECNK  117 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHhhhcC--------cCcHHHHHHHHHHHH
Confidence            9999999999999999999999999988854        666666666655543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.86  E-value=1.1  Score=45.51  Aligned_cols=169  Identities=20%  Similarity=0.140  Sum_probs=114.7

Q ss_pred             HHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHHcCCCChH
Q 004829          274 AIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAML----GQIENSILCYTAGLEIQRQVLGETDHR  349 (728)
Q Consensus       274 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~  349 (728)
                      ......+++..|...+..+-...       .    ......++.+|...    .+..+|..+|+.+..          ..
T Consensus        49 ~~~~~~~~~~~a~~~~~~a~~~~-------~----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g  107 (292)
T COG0790          49 AGSAYPPDYAKALKSYEKAAELG-------D----AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DG  107 (292)
T ss_pred             ccccccccHHHHHHHHHHhhhcC-------C----hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cc
Confidence            33445677888888888776521       1    13477778877654    367889998885443          35


Q ss_pred             HHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHH
Q 004829          350 VGETCRYVAEAHVQ----SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKG-------DYEAALEHYVL  418 (728)
Q Consensus       350 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g-------~~~~A~~~~~~  418 (728)
                      ...+.+.||.+|..    ..++.+|..+|.++........       ..+...++.+|..-.       +...|+..|.+
T Consensus       108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~  180 (292)
T COG0790         108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRK  180 (292)
T ss_pred             cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHH
Confidence            55678889998887    4489999999999986532110       233667777776542       23367778777


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Q 004829          419 ASMSMAANGHELDVASIDCSIGDAYLS----LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG  489 (728)
Q Consensus       419 al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  489 (728)
                      +...        ....+...+|.+|..    ..++.+|..+|.++.+.        ..  ....+.++ ++...|
T Consensus       181 aa~~--------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         181 AAEL--------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHh--------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence            6543        245677888877755    34889999999999886        22  66677777 666655

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=95.81  E-value=2  Score=41.69  Aligned_cols=185  Identities=16%  Similarity=0.147  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004829          478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ-SMNELEQAVKLLNKALKIYGKTPGQQS  556 (728)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~  556 (728)
                      +..+|.+....|+|++...++++++.....        -...-...++.+|- ..|....+...+.......... +...
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e--------Lt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~-~~~~   74 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE--------LTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK-GNEK   74 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCC--------CCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc-chhH
Confidence            567899999999999999999999988322        12233344444442 2344455555554444333322 1111


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHHHHHHHHc-----C-----CHHHHHHH
Q 004829          557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK---KSALFGIALNQMGLACVQR-----Y-----TINEAADL  623 (728)
Q Consensus       557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~  623 (728)
                      ..     .+..-| +..=-++=...+..++.+.....-+   ........+-..|..|.-.     |     -.+.|...
T Consensus        75 ~~-----~~i~~y-k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a  148 (236)
T PF00244_consen   75 QV-----KLIKDY-KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA  148 (236)
T ss_dssp             HH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence            10     111111 1111122344555556555443211   1111222222334444321     1     24789999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHc
Q 004829          624 FEEARTILEKEYGPYHHDTLGVYSNLAGTY-DAMGRIDDAIEILEYVVGMREEKL  677 (728)
Q Consensus       624 ~~~al~~~~~~~~~~~~~~~~~~~~La~~~-~~~g~~~~A~~~~~~al~~~~~~~  677 (728)
                      |++|+.+....+.+.+|.......+.+..| ..+|+.++|+...++++.-....+
T Consensus       149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l  203 (236)
T PF00244_consen  149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISEL  203 (236)
T ss_dssp             HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGG
T ss_pred             hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Confidence            999999999989999999999888888776 458999999999999988665444

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.78  E-value=0.027  Score=35.54  Aligned_cols=31  Identities=23%  Similarity=0.527  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829          519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYG  549 (728)
Q Consensus       519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  549 (728)
                      .++..+|.+|..+|++++|+.+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5789999999999999999999999999876

...

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.75  E-value=0.013  Score=60.49  Aligned_cols=109  Identities=15%  Similarity=0.080  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHH
Q 004829          521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALF  600 (728)
Q Consensus       521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  600 (728)
                      +-.-+.-++..+.|+.|+..|.+|+++.+..       +..+.+.+.++.+.++|..|+..+.+|++.        .+..
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnc-------a~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~   71 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNC-------AIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY   71 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcc-------eeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence            4455667788899999999999999987765       445567788999999999999999999998        5667


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT  652 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~  652 (728)
                      ..+|+..|.++...+.+.+|+..|+....+        .|+...+...+..|
T Consensus        72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDEC  115 (476)
T ss_pred             hheeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHH
Confidence            889999999999999999999999998887        55555454444444

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=2.8  Score=42.70  Aligned_cols=141  Identities=17%  Similarity=0.155  Sum_probs=96.4

Q ss_pred             HHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829          277 CSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY  356 (728)
Q Consensus       277 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  356 (728)
                      +...++.+|..+-+..+.-........-......+|+.+..+|...|+...-...+...+...  .++.+....+.....
T Consensus       137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~  214 (493)
T KOG2581|consen  137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINL  214 (493)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHH
Confidence            345677888777665554321111111112234568888999999999777666666555443  344455666777778


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSM  423 (728)
Q Consensus       357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  423 (728)
                      |-..|...+.|+.|.....+..  +|...  .....+..++.+|.+..-+++|..|.+++.+|+...
T Consensus       215 LLr~yL~n~lydqa~~lvsK~~--~pe~~--snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka  277 (493)
T KOG2581|consen  215 LLRNYLHNKLYDQADKLVSKSV--YPEAA--SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA  277 (493)
T ss_pred             HHHHHhhhHHHHHHHHHhhccc--Ccccc--ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence            8889999999999988777654  22222  223567788999999999999999999999988654

>PRK14707 hypothetical protein; Provisional

Probab=95.67  E-value=4.8  Score=49.74  Aligned_cols=379  Identities=8%  Similarity=0.003  Sum_probs=201.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGET--CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS  389 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  389 (728)
                      -..++.++..+.++.++..+-..+..+...+..  ++.....  -..++.++-..++|.+...+-.-++.+.........
T Consensus       834 AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~--e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~  911 (2710)
T PRK14707        834 VQHVATVLNAMSKWPDNAVCAAAAGAMAERLAD--EPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPE  911 (2710)
T ss_pred             HHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc--ChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHH
Confidence            356788888888888888887777777665422  3333322  234566677777777766666666666555543333


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829          390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASI--DCSIGDAYLSLARFDEAIFSYHKALTAFKSAK  467 (728)
Q Consensus       390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  467 (728)
                      ...+..-..++.++..+.++.++-..-.-+..+......++.....  -..++.++-.+++|.+...+-.-+..+...+.
T Consensus       912 Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~  991 (2710)
T PRK14707        912 LRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLV  991 (2710)
T ss_pred             HHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHh
Confidence            3233334456666666666655444433344444444444443333  34567777788888877666666655555442


Q ss_pred             CCCCHHH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHH--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          468 GENHPAV--ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEI--ASGLIDIAAIYQSMNELEQAVKLLNK  543 (728)
Q Consensus       468 ~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~  543 (728)
                      .  ++..  ...-..+++++..+.++.++-.+-.-+..+...+.   ..+..  ...-..++.++....++.+.-.+-.-
T Consensus       992 ~--~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa---~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~A 1066 (2710)
T PRK14707        992 D--EPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS---NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAA 1066 (2710)
T ss_pred             c--cHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc---cCHhhhhhcchHHHHHHHHhhccCCCchhHHHH
Confidence            1  2222  22234567777777777665555555555554432   11211  11223455555555555443333333


Q ss_pred             HHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          544 ALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAAD  622 (728)
Q Consensus       544 al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  622 (728)
                      +..+......... ..+..-..++.++...-+|.+.-.+-+-++.+...++.........-...++.++-...++...-.
T Consensus      1067 a~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~ 1146 (2710)
T PRK14707       1067 ASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQA 1146 (2710)
T ss_pred             HHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchH
Confidence            3333332211110 011122356777777788888778888888888777655444333334444544444444433332


Q ss_pred             HHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829          623 LFEEARTILEKEYGPYHHDT--LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG  699 (728)
Q Consensus       623 ~~~~al~~~~~~~~~~~~~~--~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  699 (728)
                      +=.-+..+..++..  .+..  ...-..++..+....++.+.-.+-+-++.+....-...+|.-.-....|+.+.....
T Consensus      1147 cr~Aa~~LA~RL~~--d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~s 1223 (2710)
T PRK14707       1147 CESAIDVLAATLAN--APGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANAMS 1223 (2710)
T ss_pred             HHHHHHHHHHHhcc--chhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHH
Confidence            22233333333322  2222  112245666677777777666666666666666555666655444444444444333

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.65  E-value=0.029  Score=35.40  Aligned_cols=31  Identities=19%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHR  382 (728)
Q Consensus       352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  382 (728)
                      .+|+.+|.+|...|++++|+.+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5789999999999999999999999999876

...

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.64  E-value=1.5  Score=44.41  Aligned_cols=158  Identities=16%  Similarity=0.133  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHc----CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 004829          476 SVFVRLADLYHKI----GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS----MNELEQAVKLLNKALKI  547 (728)
Q Consensus       476 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  547 (728)
                      .....++.+|..-    .+..+|..+|..+...           ......+.||.+|..    ..++.+|..+|+++...
T Consensus        74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~  142 (292)
T COG0790          74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL  142 (292)
T ss_pred             HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc
Confidence            3445555555442    3466677777644332           134456667777765    34777777777777654


Q ss_pred             HhcCCCCCCcHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc----CC
Q 004829          548 YGKTPGQQSTIAGIEAQMGVMYYMTG-------NYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR----YT  616 (728)
Q Consensus       548 ~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~  616 (728)
                      -     .... ......++.+|..-.       +...|...|.++....          ...+...+|.+|..-    .+
T Consensus       143 g-----~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----------~~~a~~~lg~~y~~G~Gv~~d  206 (292)
T COG0790         143 G-----NVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----------NPDAQLLLGRMYEKGLGVPRD  206 (292)
T ss_pred             C-----ChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----------CHHHHHHHHHHHHcCCCCCcC
Confidence            2     1111 223456666665531       2236777777776552          346788888777652    48


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHH
Q 004829          617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG---------------RIDDAIEILEYVVG  671 (728)
Q Consensus       617 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g---------------~~~~A~~~~~~al~  671 (728)
                      +.+|..+|.++.+.        ..  ....+.++ ++...|               +...|..++..+..
T Consensus       207 ~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~  265 (292)
T COG0790         207 LKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACE  265 (292)
T ss_pred             HHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHH
Confidence            99999999999886        22  55778888 666655               55566666665554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.57  E-value=1.5  Score=45.61  Aligned_cols=152  Identities=13%  Similarity=0.121  Sum_probs=109.0

Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC------------CC--------CCcHHHHHHHHHHHHHHHH
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN------------HG--------IPSEEIASGLIDIAAIYQS  530 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~--------~~~~~~~~~~~~la~~~~~  530 (728)
                      +|....++..++.++..+|++..|.+++++|+-.++...            .|        ..+.....++......+.+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            888899999999999999999999999999987665321            11        1233455667777888899


Q ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 004829          531 MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA  610 (728)
Q Consensus       531 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  610 (728)
                      .|-+..|+++.+-.+.+.+..  ++   ..++..+-....+.++|+--++.++.........   .........+..+.+
T Consensus       116 RG~~rTAlE~~KlLlsLdp~~--DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aLA  187 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPDE--DP---LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIALA  187 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCCC--Cc---chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHHH
Confidence            999999999999988886652  11   2344555666677888887777777654420000   000122456677788


Q ss_pred             HHHcCCH---------------HHHHHHHHHHHHH
Q 004829          611 CVQRYTI---------------NEAADLFEEARTI  630 (728)
Q Consensus       611 ~~~~g~~---------------~~A~~~~~~al~~  630 (728)
                      ++..++-               +.|...+.+|+..
T Consensus       188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~  222 (360)
T PF04910_consen  188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILR  222 (360)
T ss_pred             HHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence            8888877               8999999999988

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.48  E-value=7.1  Score=45.73  Aligned_cols=351  Identities=13%  Similarity=-0.006  Sum_probs=167.0

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC-CchhHhH
Q 004829          230 REMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG-QDHALAK  308 (728)
Q Consensus       230 ~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~  308 (728)
                      ..++.. +.|++|+..|++....++..      .+-..+.+.+|......-.-..--+.|.+|+..+....+ +..|.. 
T Consensus       483 ~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  554 (932)
T PRK13184        483 DAFLAE-KLYDQALIFYRRIRESFPGR------KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLE-  554 (932)
T ss_pred             HHHHhh-HHHHHHHHHHHHHhhcCCCc------ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchH-
Confidence            444444 36777777777666554322      223456677777766542222222444444444433333 334444 


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 004829          309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY----VAEAHVQSLQFDEAEKICQMALDIHREN  384 (728)
Q Consensus       309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----la~~~~~~g~~~~A~~~~~~al~~~~~~  384 (728)
                         |+..|.+|..+|+|++-+++|.-|++.+..     +|......-.    +-.+.+.  +-..|....--++.+.|+.
T Consensus       555 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  624 (932)
T PRK13184        555 ---YLGKALVYQRLGEYNEEIKSLLLALKRYSQ-----HPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEK  624 (932)
T ss_pred             ---HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC-----CCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCccc
Confidence               888999999999999999999999998754     6665543322    2222222  1223334444444444433


Q ss_pred             CCCCcHH------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 004829          385 TSPASIE------------------------EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIG  440 (728)
Q Consensus       385 ~~~~~~~------------------------~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  440 (728)
                      .......                        ....-..+ .+.+..|..---.+.++++...       .+. .++.+.-
T Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~  695 (932)
T PRK13184        625 ISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMEL-FLSFWSGFTPFLPELFQRAWDL-------RDY-RALADIF  695 (932)
T ss_pred             ccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHH-HHHHHhcCchhhHHHHHHHhhc-------ccH-HHHHHHH
Confidence            2211000                        00000000 0111222222222333333221       222 5666666


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcH
Q 004829          441 DAYLSLARFDEAIFSYHKALTAFKSAKGEN-----HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSE  515 (728)
Q Consensus       441 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  515 (728)
                      .+...+|.++-+.+.....-+.+....-..     .+.....+..-..+......++++...+...           ++.
T Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~  764 (932)
T PRK13184        696 YVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----------DPT  764 (932)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----------CHH
Confidence            777888888877766665554444331111     1111111222122333444666666544321           111


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004829          516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK  595 (728)
Q Consensus       516 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  595 (728)
                      ....++...+.-....++.+.-....+.... ....   ....-........+|+...++++|-+++...- .-.-..  
T Consensus       765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--  837 (932)
T PRK13184        765 LILYAFDLFAIQALLDEEGESIIQLLQLIYD-YVSE---EERHDHLLVYEIQAHLWNRDLKKAYKLLNRYP-LDLLLD--  837 (932)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHh-ccCC---hhhhhhhhHHHHHHHHHhccHHHHHHHHHhCC-hhhhcc--
Confidence            2222333333333333443333332222221 1111   11112233445667777888888888884331 111111  


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          596 KSALFGIALNQMGLACVQRYTINEAADLFEEAR  628 (728)
Q Consensus       596 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  628 (728)
                         ....++...|.-+...++-+.|..+|..+.
T Consensus       838 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  867 (932)
T PRK13184        838 ---EYSEAFVLYGCYLALTEDREAAKAHFSGCR  867 (932)
T ss_pred             ---ccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence               123455556666667778888888887766

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.48  E-value=0.94  Score=47.10  Aligned_cols=159  Identities=15%  Similarity=-0.002  Sum_probs=113.9

Q ss_pred             cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc--------------------CCCChhHHHHHHHHH
Q 004829          214 AGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICAN--------------------GKPSLEQVMCLHVLA  273 (728)
Q Consensus       214 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~--------------------~~~~~~~~~~~~~la  273 (728)
                      ....+|-....|+.++..+..+| +++.|.++.++|+-.++....                    ...+.....+++...
T Consensus        32 ll~~~PyHidtLlqls~v~~~~g-d~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQG-DHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            44678999999999999999998 999999999999988774411                    011234456677788


Q ss_pred             HHHHHcCChhHHHHHHHHhhhhhhhhcCCc-hhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 004829          274 AIHCSLGQYNEAIPVLERSVEIPVLEDGQD-HALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGE  352 (728)
Q Consensus       274 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  352 (728)
                      ..+.+.|-+..|.++.+-.+.+.     +. +|..   +++.+-....+.++|+--+.+++.......+.   .-.....
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLd-----p~~DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn  179 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLD-----PDEDPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPN  179 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcC-----CCCCcch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCcc
Confidence            88999999999999999998876     33 3332   35555555667788887777777655421100   0001223


Q ss_pred             HHHHHHHHHHHhCCH---------------HHHHHHHHHHHHHHHHc
Q 004829          353 TCRYVAEAHVQSLQF---------------DEAEKICQMALDIHREN  384 (728)
Q Consensus       353 ~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~  384 (728)
                      ..+.++.+++..++-               +.|...+.+|+..+|..
T Consensus       180 ~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  180 FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            456677778888877               89999999999888754

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.46  E-value=3.7  Score=42.29  Aligned_cols=185  Identities=14%  Similarity=0.007  Sum_probs=132.1

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829          514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG  593 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  593 (728)
                      -....+..+..+.++....++..|...+.+..-..... ........++..++.++.+.+.--.+..+.-.++....+..
T Consensus       269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~-~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~  347 (482)
T KOG4322|consen  269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG-CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS  347 (482)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence            44556777889999999999999999998876544332 23345566777788888888888888888877777665544


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH------HHcCChHHHHHHHH
Q 004829          594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY------DAMGRIDDAIEILE  667 (728)
Q Consensus       594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~------~~~g~~~~A~~~~~  667 (728)
                      -+  ...+..-..++..+...|..++|+..+..++....-..+-+  +.+.+++-.++|+      ....+.+.+..+++
T Consensus       348 ld--yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~--drara~fvfanC~lA~a~s~~~e~ld~~~~~L~  423 (482)
T KOG4322|consen  348 LD--YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLD--DRARAIFVFANCTLAFALSCANESLDGFPRYLD  423 (482)
T ss_pred             cc--hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchh--hcceeEEEEEeeeecchhhhhhhhHHhhHHHHH
Confidence            32  22355667788888999999999999999988765443322  1112222122221      24557788888888


Q ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829          668 YVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       668 ~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                      +|-..+.++  .-|....++.+-+|..|...|+.++-.
T Consensus       424 ~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn  459 (482)
T KOG4322|consen  424 LAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERN  459 (482)
T ss_pred             HHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHH
Confidence            888887665  467788999999999999999987754

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.46  E-value=2.9  Score=41.08  Aligned_cols=188  Identities=13%  Similarity=0.171  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC---C-------hHHHHHHHHHHHHHHHhC--------------CH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGET---D-------HRVGETCRYVAEAHVQSL--------------QF  367 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~~~~~~~la~~~~~~g--------------~~  367 (728)
                      .+.+..+|+..|+..+|+..|++=+..+.+..+..   .       .....-+..+|++.....              -|
T Consensus        13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy   92 (247)
T PF11817_consen   13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY   92 (247)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence            56677899999999999999999988888776551   1       011122233444443322              12


Q ss_pred             HHHHHHHHHHHHHHHHcCC-CC--c-----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 004829          368 DEAEKICQMALDIHRENTS-PA--S-----------------IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG  427 (728)
Q Consensus       368 ~~A~~~~~~al~~~~~~~~-~~--~-----------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  427 (728)
                      ..|-.+...-......... +.  .                 +.....+................++.+.+|...+...+
T Consensus        93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~  172 (247)
T PF11817_consen   93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG  172 (247)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc
Confidence            3333333222222222210 00  0                 00000011111111122344567888899998888888


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENA  501 (728)
Q Consensus       428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  501 (728)
                      .......+...+|..|+..|++++|+.+|+.+...+++.  +-......++..+..|+...|+.+..+.+.-+.
T Consensus       173 ~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  173 QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            888888888999999999999999999999998777654  234456677888999999999988877665443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.43  E-value=4.5  Score=43.08  Aligned_cols=227  Identities=11%  Similarity=-0.085  Sum_probs=139.0

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      .|..+.....-+.++...|+.+.|+..+..+++.  ..    ..-....++.+|.++..+.+|..|..++....+..   
T Consensus       263 ~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~--~~----kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des---  333 (546)
T KOG3783|consen  263 YPKGALWLLMEARILSIKGNSEAAIDMESLSIPI--RM----KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES---  333 (546)
T ss_pred             CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccH--HH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh---
Confidence            3444556677788888899988999999888872  11    33456678899999999999999999998877762   


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHhcCCCCCCc----------------------H
Q 004829          509 NHGIPSEEIASGLIDIAAIYQS--------MNELEQAVKLLNKALKIYGKTPGQQST----------------------I  558 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~----------------------~  558 (728)
                           ....+..-+..|.++..        .|+-+.|..+++....+....+...+.                      +
T Consensus       334 -----dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~l  408 (546)
T KOG3783|consen  334 -----DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILL  408 (546)
T ss_pred             -----hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccc
Confidence                 22222222233344322        345566666666555554442111110                      0


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                      +.-+..++.+|..-...  +..-..++........-.+......-+..+|.++..+|+...|..+|..+++-... ...+
T Consensus       409 a~P~~El~Y~Wngf~~~--s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~-~~~d  485 (546)
T KOG3783|consen  409 ASPYYELAYFWNGFSRM--SKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESK-RTED  485 (546)
T ss_pred             cchHHHHHHHHhhcccC--ChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hccc
Confidence            10112222222111111  11111122222222212133445566778899999999999999999998865222 2223


Q ss_pred             ChhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHH
Q 004829          639 HHDTLGVYSNLAGTYDAMGR-IDDAIEILEYVVGM  672 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~-~~~A~~~~~~al~~  672 (728)
                      .--.+.+++.||.+|..+|. ..+|..++.+|.+.
T Consensus       486 ~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~  520 (546)
T KOG3783|consen  486 LWAVPFALYELALLYWDLGGGLKEARALLLKAREY  520 (546)
T ss_pred             cccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence            33456699999999999999 99999999999874

>PRK14707 hypothetical protein; Provisional

Probab=95.41  E-value=4.5  Score=49.95  Aligned_cols=382  Identities=8%  Similarity=0.020  Sum_probs=204.1

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829          313 MQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGE--TCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI  390 (728)
Q Consensus       313 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  390 (728)
                      ..++.++..+.+|.+...+-..+..+...+..  ++....  --..++.++-...++.+...+-.-+..+..........
T Consensus       751 QevANaLNALSKWPd~~~C~~AA~aLA~rLa~--~~~Lr~aL~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~L  828 (2710)
T PRK14707        751 QQVATALNALSKWPDNQACAAAANTLAERQLR--EPDVRDVLKPREMTNALNALSKWPDTPACAAAASALAARVADDPRL  828 (2710)
T ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh--CcchhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhH
Confidence            34566666666666555555544444443321  222211  12334555555555555555544454444433322222


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004829          391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASI--DCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG  468 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  468 (728)
                      ..+..-..+++++....++..+..+-..+..+......++.....  -..++.++-.+++|.+...+-.-++.+...+..
T Consensus       829 r~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~  908 (2710)
T PRK14707        829 REAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLAD  908 (2710)
T ss_pred             HHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhc
Confidence            122223456666666777766655555555555444444443333  245677777788888777777777777666632


Q ss_pred             CCCHHHH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          469 ENHPAVA--SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEI--ASGLIDIAAIYQSMNELEQAVKLLNKA  544 (728)
Q Consensus       469 ~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a  544 (728)
                        ++...  ..-..++.++..+.++.++-.+-.-+..+...+.   ..+..  ...-..++.++...+++.+.-.+-.-+
T Consensus       909 --d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa---~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA  983 (2710)
T PRK14707        909 --EPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLS---DDPDLREALDASNLPQVLNALSKWPDVPAGGEVV  983 (2710)
T ss_pred             --CHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhc---cChhhhhhccHHHHHHHHhhhccCCCchHHHHHH
Confidence              33333  3334677777777777766555555544444432   11222  222234566666666665554444444


Q ss_pred             HHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829          545 LKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADL  623 (728)
Q Consensus       545 l~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  623 (728)
                      ..+......... .....-..++.++..+.+|.++-.+-.-+..+...+........+.--..++.++-...+|.+.-.+
T Consensus       984 ~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~C 1063 (2710)
T PRK14707        984 DALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLCKALSSQGLTTVLNALCKWPEMPVC 1063 (2710)
T ss_pred             HHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhhhhcchHHHHHHHHhhccCCCchhH
Confidence            444333211110 0111123567778888888877666666666666653331111122233455666666666655444


Q ss_pred             HHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCh
Q 004829          624 FEEARTILEKEYGPYHHDTL--GVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRV  701 (728)
Q Consensus       624 ~~~al~~~~~~~~~~~~~~~--~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~  701 (728)
                      -.-+..+...+..  ++...  ..-..++.++..+-++.+.-.+-..++.+...+....++...--...++.++....+|
T Consensus      1064 r~Aa~aLA~rL~~--d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKW 1141 (2710)
T PRK14707       1064 LAAASALAERLSD--DLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKW 1141 (2710)
T ss_pred             HHHHHHHHHHhhc--cHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcC
Confidence            4444444443322  22221  2234677788888888887777777888877776666666666666777777776666


Q ss_pred             hH
Q 004829          702 RN  703 (728)
Q Consensus       702 ~~  703 (728)
                      -.
T Consensus      1142 p~ 1143 (2710)
T PRK14707       1142 PG 1143 (2710)
T ss_pred             CC
Confidence            54

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.40  E-value=4.9  Score=43.36  Aligned_cols=389  Identities=11%  Similarity=-0.036  Sum_probs=208.9

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGC-MQLGDTYAMLGQIENSILCYTAGLEIQRQ  341 (728)
Q Consensus       263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~  341 (728)
                      |.....|...|..-.+.|..+.+...|++++.-.     +-.    ...| ..++.+-...|+.+.-...|++|+.....
T Consensus        76 Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-----p~S----vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~  146 (577)
T KOG1258|consen   76 PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-----PLS----VDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL  146 (577)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-----hhH----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc
Confidence            6666778888999999999999999999998754     211    1122 22333334557777777778877776422


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH------cCCHHHHHHH
Q 004829          342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS------KGDYEAALEH  415 (728)
Q Consensus       342 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~------~g~~~~A~~~  415 (728)
                           +-.....|-..-..-..++++..-...|++.+++-.....        .++..=.-+..      .-..+++...
T Consensus       147 -----dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~--------~~f~~f~~~l~~~~~~~l~~~d~~~~l  213 (577)
T KOG1258|consen  147 -----DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN--------RHFDRFKQLLNQNEEKILLSIDELIQL  213 (577)
T ss_pred             -----chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH--------HHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence                 1222233444444446677788888888887765322210        01100000000      1111111111


Q ss_pred             HHHHHHHHHhcCCChhHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHH
Q 004829          416 YVLASMSMAANGHELDVASIDC-SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDS  494 (728)
Q Consensus       416 ~~~al~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  494 (728)
                      -...... ............+. .+-.+-...+.++++...+.+...+                  .=.++...-...+.
T Consensus       214 ~~~~~~~-~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~------------------~~~~~~~s~~~~~k  274 (577)
T KOG1258|consen  214 RSDVAER-SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI------------------HEKVYQKSEEEEEK  274 (577)
T ss_pred             hhhHHhh-hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH------------------HHHHHHhhHhHHHH
Confidence            1100000 00000000000000 0000000111122222222222222                  11222233334444


Q ss_pred             HHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC
Q 004829          495 KSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN  574 (728)
Q Consensus       495 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  574 (728)
                      +..++..+...-... ..........|......-...|+++...-.|++++--+...       ...|...+......|+
T Consensus       275 r~~fE~~IkrpYfhv-kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-------~efWiky~~~m~~~~~  346 (577)
T KOG1258|consen  275 RWGFEEGIKRPYFHV-KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-------DEFWIKYARWMESSGD  346 (577)
T ss_pred             HHhhhhhcccccccc-CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-------HHHHHHHHHHHHHcCc
Confidence            555555444321111 12234455667777778888999999999999998655433       4566777777778899


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004829          575 YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD  654 (728)
Q Consensus       575 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~  654 (728)
                      .+-|...+..+.++...    ..   ..+...-+......|++..|...|+....-        -|....+-..-+....
T Consensus       347 ~~~~~~~~~~~~~i~~k----~~---~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~  411 (577)
T KOG1258|consen  347 VSLANNVLARACKIHVK----KT---PIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWER  411 (577)
T ss_pred             hhHHHHHHHhhhhhcCC----CC---cHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHH
Confidence            99998888888877422    12   244555577778889999999999988776        4666666666777788


Q ss_pred             HcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHH-HhCChhHHHHHHHHHHHhhcccc
Q 004829          655 AMGRIDDAIEILEYVVGMREEKLGTANPD-VEDEKRRLAELLK-EAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       655 ~~g~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La~~~~-~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      ++|+.+.+.. +...+...  .-|..++. ....+...+.... -.++.+.|. ..+..+++..|.+
T Consensus       412 r~~~~~~~~~-~~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~-~~l~~~~~~~~~~  474 (577)
T KOG1258|consen  412 RKGNLEDANY-KNELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADLAR-IILLEANDILPDC  474 (577)
T ss_pred             HhcchhhhhH-HHHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHHHH-HHHHHhhhcCCcc
Confidence            8899888885 22222211  11223333 3444555555444 445666666 7777777666553

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.28  E-value=4.2  Score=41.87  Aligned_cols=198  Identities=15%  Similarity=0.119  Sum_probs=138.9

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK  546 (728)
Q Consensus       467 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  546 (728)
                      .|.+-.......+..+.++....++..|...+.+..-...+   +........++..++.++.+-+..-.+..+.-.++.
T Consensus       265 ~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k---~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~  341 (482)
T KOG4322|consen  265 FGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK---GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEF  341 (482)
T ss_pred             hcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHH
Confidence            33445556777888999999999999999999998776655   234556777888888888888877777777776666


Q ss_pred             HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHH-----HHHHHHHHHHHHHHcCCHHHHH
Q 004829          547 IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL-----FGIALNQMGLACVQRYTINEAA  621 (728)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~  621 (728)
                      ...+. ..+...+..-..++..+...|-.++|+..+..++....-.+.-....     .+.++..-+..+ ...+.+.+.
T Consensus       342 ~~sey-~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~  419 (482)
T KOG4322|consen  342 KRSEY-SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFP  419 (482)
T ss_pred             HHHHh-ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhH
Confidence            65554 33334445556788899999999999999999998765544322110     011111111112 345678888


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH---HHHHHHHHHH
Q 004829          622 DLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD---AIEILEYVVG  671 (728)
Q Consensus       622 ~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~---A~~~~~~al~  671 (728)
                      +++++|-.++.+..-  +....++.+.+|..|...|+.++   +...|+++..
T Consensus       420 ~~L~~A~~~f~kL~~--he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  420 RYLDLAQSIFYKLGC--HEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             HHHHHHHHHHHHccc--hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            888888888877643  66788899999999999998754   4445555544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.26  E-value=0.018  Score=56.73  Aligned_cols=91  Identities=16%  Similarity=0.169  Sum_probs=82.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004829          400 GLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV  479 (728)
Q Consensus       400 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  479 (728)
                      +.-.+..|.++.|+++|..++.+      .|..+..+...+.+++.+++...|+..|..++++        +++.+.-|-
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~l------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk  186 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIEL------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK  186 (377)
T ss_pred             HHHHhcCcchhhhhccccccccc------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence            34455678899999999998865      7888899999999999999999999999999999        889999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          480 RLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      ..+.....+|++.+|..++..++++
T Consensus       187 frg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  187 FRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             hhhHHHHHhhchHHHHHHHHHHHhc
Confidence            9999999999999999999999887

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.13  E-value=0.011  Score=58.16  Aligned_cols=91  Identities=15%  Similarity=0.110  Sum_probs=82.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004829          566 GVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV  645 (728)
Q Consensus       566 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  645 (728)
                      +.-.+..|.+++|++.|..++.+        ++..+..+...+.+++.+++...|+.-|..++.+        +|+...-
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~  184 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKG  184 (377)
T ss_pred             HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccc
Confidence            33445678899999999999987        5667889999999999999999999999999999        9999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          646 YSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       646 ~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      |-..+.+...+|++++|...+..++++
T Consensus       185 ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  185 YKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            999999999999999999999999986

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=94.99  E-value=2  Score=45.81  Aligned_cols=177  Identities=16%  Similarity=0.055  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHhc
Q 004829          395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARF-------DEAIFSYHKALTAFKSAK  467 (728)
Q Consensus       395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~  467 (728)
                      ....||..++..++|+.|...|+.+..-+.........+.++-..|.+.+..+..       +....+++.|+..+....
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~  289 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence            3678999999999999999999988776654444445566666677777766643       477778888888777731


Q ss_pred             C---CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--cCCCCCCCcHHHHHHHHHHHHHH--HHcCCHHHHHHH
Q 004829          468 G---ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY--GKPNHGIPSEEIASGLIDIAAIY--QSMNELEQAVKL  540 (728)
Q Consensus       468 ~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~  540 (728)
                      .   .......++....+.++...|.+.+|...+-+.....  ....    .-..+..+-.+|.+|  ....        
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~----~~~~alllE~~a~~~~~~~~~--------  357 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLR----PFGSALLLEQAAYCYASLRSN--------  357 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhh----hHhhHHHHHHHHHhhcccccC--------
Confidence            1   1123556677778888889999888877776665552  1110    111333444444444  1110        


Q ss_pred             HHHHHHHHhcCCC-C-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          541 LNKALKIYGKTPG-Q-QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT  591 (728)
Q Consensus       541 ~~~al~~~~~~~~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  591 (728)
                              ...++ . ....+.-+..-|.-|...|+...|..+|.+|+.++..
T Consensus       358 --------~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  358 --------RPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             --------CCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence                    00000 0 0112223344578899999999999999999988753

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.97  E-value=0.044  Score=34.19  Aligned_cols=32  Identities=16%  Similarity=0.164  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          686 DEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       686 ~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                      ++++.+|.++...|++++|+ ..++.+++..|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~-~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAI-EYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHH-HHHHHHHHHCcC
Confidence            46889999999999999999 999999999886

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=5  Score=40.99  Aligned_cols=142  Identities=15%  Similarity=0.068  Sum_probs=103.7

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 004829          362 VQSLQFDEAEKICQMALDIHRE-NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIG  440 (728)
Q Consensus       362 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  440 (728)
                      +.+.++.+|..+-...+.-... +...-+.-.+.+|+.+..+|...|+...-...+...+.......+....+...+.+-
T Consensus       137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL  216 (493)
T KOG2581|consen  137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL  216 (493)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence            3456777777776665543211 111122344667888999999999988777777776766666667777888888899


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          441 DAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       441 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      ..|...+.|+.|.....++.--  ..  ..+...++.++.+|.+..-+++|..|.+++-+|+....+
T Consensus       217 r~yL~n~lydqa~~lvsK~~~p--e~--~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  217 RNYLHNKLYDQADKLVSKSVYP--EA--ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHhhhHHHHHHHHHhhcccCc--cc--cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            9999999999998877665311  00  113467888999999999999999999999999988543

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.71  E-value=4.9  Score=39.73  Aligned_cols=221  Identities=14%  Similarity=0.172  Sum_probs=114.2

Q ss_pred             HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Q 004829          445 SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI  524 (728)
Q Consensus       445 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  524 (728)
                      .+++|++|++.+....                      ..+.+.|++.-|.++..-.++.+.+...    +........+
T Consensus         2 ~~kky~eAidLL~~Ga----------------------~~ll~~~Q~~sg~DL~~lliev~~~~~~----~~~~~~~~rl   55 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSGA----------------------LILLKHGQYGSGADLALLLIEVYEKSED----PVDEESIARL   55 (260)
T ss_dssp             HTT-HHHHHHHHHHHH----------------------HHHHHTT-HHHHHHHHHHHHHHHHHTT-------SHHHHHHH
T ss_pred             ccccHHHHHHHHHHHH----------------------HHHHHCCCcchHHHHHHHHHHHHHHcCC----CCCHHHHHHH
Confidence            3566677766665543                      3344555555555555555554444221    1112223445


Q ss_pred             HHHHHHcCCHH-HHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHh
Q 004829          525 AAIYQSMNELE-QAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSA-----------ISKFRTS  592 (728)
Q Consensus       525 a~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~  592 (728)
                      +.++.....-+ +-..+..++++-. +..+........+..+|..|++.|++.+|..+|-.+           +......
T Consensus        56 ~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~  134 (260)
T PF04190_consen   56 IELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK  134 (260)
T ss_dssp             HHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence            55555443322 3455666666666 443445566788889999999999999999887421           1111222


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----------cCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004829          593 GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE----------YGPYHHDTLGVYSNLAGTYDAMGRIDDA  662 (728)
Q Consensus       593 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~~~La~~~~~~g~~~~A  662 (728)
                      +....  ......+....|+..++...|...+....+.+...          .....|. ......|-.++.+ +    +
T Consensus       135 ~~~~e--~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~Pl-lnF~~lLl~t~e~-~----~  206 (260)
T PF04190_consen  135 GYPSE--ADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPL-LNFLQLLLLTCER-D----N  206 (260)
T ss_dssp             TSS----HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HH-HHHHHHHHHHHHH-T-----
T ss_pred             cCCcc--hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCch-HHHHHHHHHHHhc-C----c
Confidence            33222  23333444466777899999999888877664332          0112232 2222223333332 3    3


Q ss_pred             HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCh
Q 004829          663 IEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRV  701 (728)
Q Consensus       663 ~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~  701 (728)
                      ...|....+.++..+. .+|.....+..+|.+|+.....
T Consensus       207 ~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi~~~  244 (260)
T PF04190_consen  207 LPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGIQPP  244 (260)
T ss_dssp             HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH---S-
T ss_pred             HHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCCCCC
Confidence            4566666666655443 3477888899999999986543

; PDB: 3LKU_E 2WPV_G.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.57  E-value=0.33  Score=36.98  Aligned_cols=69  Identities=17%  Similarity=0.278  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhh
Q 004829          222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV  297 (728)
Q Consensus       222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  297 (728)
                      +....+.|..++... +.++|+..+.++++..      ...++...++-.+..+|...|+|.+.+.+..+-+.+..
T Consensus         6 ak~~ie~GlkLY~~~-~~~~Al~~W~~aL~k~------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~   74 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQN-ETQQALQKWRKALEKI------TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE   74 (80)
T ss_pred             HHHHHHHHHHHhccc-hHHHHHHHHHHHHhhc------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667787888885 8999999999999863      23366778888899999999999999998877676654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=94.42  E-value=7.3  Score=41.60  Aligned_cols=178  Identities=11%  Similarity=0.036  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHH
Q 004829          352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDY-------EAALEHYVLASMSMA  424 (728)
Q Consensus       352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~~  424 (728)
                      .....||..++..++|+-|...|+.+..-+....  .....+.++...|.+.+..+..       +....+++.|+..+.
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~  286 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL  286 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence            3567799999999999999999999887654332  3344455666667776666643       366677777776655


Q ss_pred             hc-----CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHH--HHcCChHHH
Q 004829          425 AN-----GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPA---VASVFVRLADLY--HKIGKLRDS  494 (728)
Q Consensus       425 ~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A  494 (728)
                      ..     ........+....+.++...|.+.+|...+-+.....-.    ....   .+..+-.+|.+|  .......  
T Consensus       287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~--  360 (414)
T PF12739_consen  287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPS--  360 (414)
T ss_pred             hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCC--
Confidence            52     222344556677778888889988888777666554210    0112   344445555555  1110000  


Q ss_pred             HHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          495 KSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       495 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                                    ..+......+.-+..-|.-|...|+...|+.+|..++.++...
T Consensus       361 --------------~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~  403 (414)
T PF12739_consen  361 --------------PGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK  403 (414)
T ss_pred             --------------ccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence                          0000012233344455778999999999999999999998754

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.31  E-value=0.48  Score=36.12  Aligned_cols=71  Identities=15%  Similarity=0.178  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP  387 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  387 (728)
                      ...-|.-++...+.++|+..++++++....     .+....++-.+..+|...|+|.+++.+...-+++..+..++
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            445566667889999999999999988543     56777888899999999999999999988888887766543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.21  E-value=0.086  Score=32.82  Aligned_cols=31  Identities=19%  Similarity=0.481  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      +++.+|.++...|++++|+..|++.+..+|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            6789999999999999999999999987764

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.16  E-value=0.092  Score=55.29  Aligned_cols=96  Identities=22%  Similarity=0.290  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCch
Q 004829          225 LLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDH  304 (728)
Q Consensus       225 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  304 (728)
                      |...|..|...| +...|+.++..|+...+.        +....+.+||.+....|-..+|-.++.+++.+.     ...
T Consensus       610 ln~aglywr~~g-n~~~a~~cl~~a~~~~p~--------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-----~se  675 (886)
T KOG4507|consen  610 LNEAGLYWRAVG-NSTFAIACLQRALNLAPL--------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-----SSE  675 (886)
T ss_pred             eecccceeeecC-CcHHHHHHHHHHhccChh--------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-----ccC
Confidence            444555555665 999999999999875322        223346789999999999999999999999886     344


Q ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829          305 ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI  338 (728)
Q Consensus       305 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  338 (728)
                      |..    ++.+|..|..+.+.+.|++.|++|++.
T Consensus       676 pl~----~~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  676 PLT----FLSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             chH----HHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            443    889999999999999999999999998

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=94.09  E-value=6.1  Score=38.35  Aligned_cols=178  Identities=12%  Similarity=0.057  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHV-QSLQFDEAEKICQMALDIHRENTSPASI  390 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~  390 (728)
                      +..+|.+....|+|++.+.+..+++....       .....-...++.+|- ..|....+...+..........+.....
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~-------eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~   76 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNP-------ELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQV   76 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCC-------CCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHH
Confidence            67789999999999999999999988721       112222333333332 1233333333333333222221110000


Q ss_pred             HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHh-----C-----CHHHHHH
Q 004829          391 EEAADRRLMGLICDSKGD-YEAALEHYVLASMSMAA-----NGHELDVASIDCSIGDAYLSL-----A-----RFDEAIF  454 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~  454 (728)
                             .+  +-..... -++-...+...+.+...     ..+....+..+-..|..|...     |     -.+.|..
T Consensus        77 -------~~--i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~  147 (236)
T PF00244_consen   77 -------KL--IKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE  147 (236)
T ss_dssp             -------HH--HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             -------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence                   00  0000000 11112222333333221     112222233333345554332     1     2378999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004829          455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHK-IGKLRDSKSYCENALKIY  505 (728)
Q Consensus       455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  505 (728)
                      .|++|++++...+++.+|.......+.+..|+. +|+.++|....+++++..
T Consensus       148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a  199 (236)
T PF00244_consen  148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA  199 (236)
T ss_dssp             HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            999999999998888899988888888887755 899999999988887764

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.09  E-value=11  Score=41.08  Aligned_cols=105  Identities=16%  Similarity=0.080  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCC
Q 004829          268 CLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETD  347 (728)
Q Consensus       268 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  347 (728)
                      .+.+-|.-.++..+|..++++|...+....   ..............++.||..+.+.+.|.+++++|-+.        +
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~---~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------d  424 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDII---SDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------D  424 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------c
Confidence            345567777888888888888888876542   11111223456788888888888888888888888777        6


Q ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          348 HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE  383 (728)
Q Consensus       348 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  383 (728)
                      |...-....+-.+....+.-++|+.+.........+
T Consensus       425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence            666666667777777788888888888777765543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.96  E-value=6.5  Score=40.37  Aligned_cols=147  Identities=10%  Similarity=0.024  Sum_probs=98.3

Q ss_pred             CChhHHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHH
Q 004829          428 HELDVASIDCSIGDAYLSLAR------------FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSK  495 (728)
Q Consensus       428 ~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  495 (728)
                      .+|....+|..+....-..-.            .+.-+.+|++||+.        +|.....+..+-.+..+..+.++..
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            356666666666554433322            34556667777776        6666666666666667777888888


Q ss_pred             HHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC-----------CcHHHHHHH
Q 004829          496 SYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ-----------STIAGIEAQ  564 (728)
Q Consensus       496 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~~  564 (728)
                      .-+++++....      ..+.....|...-...+..-.+......|.+++..........           ..+..++..
T Consensus        86 ~~we~~l~~~~------~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r  159 (321)
T PF08424_consen   86 KKWEELLFKNP------GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR  159 (321)
T ss_pred             HHHHHHHHHCC------CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence            88888888732      2344444444444444445568899999999988876543321           245566777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          565 MGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       565 la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                      +.......|..+.|+..++-.+++
T Consensus       160 ~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  160 LCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHHCCchHHHHHHHHHHHHH
Confidence            888889999999999999998886

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.94  E-value=0.26  Score=39.54  Aligned_cols=43  Identities=26%  Similarity=0.256  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          621 ADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       621 ~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                      +..+++.+..        +|....+.+.+|..+...|++++|++.+-.++.
T Consensus         8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~   50 (90)
T PF14561_consen    8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVR   50 (90)
T ss_dssp             HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4456666666        888889999999999999999999999988766

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.90  E-value=0.82  Score=40.62  Aligned_cols=87  Identities=17%  Similarity=0.069  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004829          600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT  679 (728)
Q Consensus       600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~  679 (728)
                      ....+..+..+-...++.+++..++....-+        .|.....-..-|.++...|++.+|+.+|+.+.+        
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--------   72 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--------   72 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc--------
Confidence            3456666777777888999998888877666        888888888899999999999999999998765        


Q ss_pred             CChHHHHHHHHHHHHHHHhCChh
Q 004829          680 ANPDVEDEKRRLAELLKEAGRVR  702 (728)
Q Consensus       680 ~~p~~~~~~~~La~~~~~~g~~~  702 (728)
                      ..|....+.-.++.++..+|+.+
T Consensus        73 ~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   73 RAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             cCCCChHHHHHHHHHHHHcCChH
Confidence            44666666666777887777643

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.73  E-value=0.74  Score=37.93  Aligned_cols=98  Identities=16%  Similarity=0.187  Sum_probs=59.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHHHHHH
Q 004829          565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY----TI-------NEAADLFEEARTILEK  633 (728)
Q Consensus       565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~-------~~A~~~~~~al~~~~~  633 (728)
                      ++.-++..|++-+|+++.+..+.....   ..+  ....+..-|.++..+.    +.       -.|++.|.++..+   
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~---~~~--~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L---   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGE---DES--SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL---   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccC---CCc--hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc---
Confidence            466788999999999999998876322   111  1245556677666543    33       3456666666666   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP  682 (728)
Q Consensus       634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p  682 (728)
                           .|..+..++.||.-+..       ..+|++++...++.+.-..|
T Consensus        74 -----sp~~A~~L~~la~~l~s-------~~~Ykk~v~kak~~Lsv~~p  110 (111)
T PF04781_consen   74 -----SPDSAHSLFELASQLGS-------VKYYKKAVKKAKRGLSVTNP  110 (111)
T ss_pred             -----ChhHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHhcccCC
Confidence                 67776666666665544       44555555544444333333

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.66  E-value=1.1  Score=37.04  Aligned_cols=95  Identities=16%  Similarity=0.147  Sum_probs=63.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC----CHH-------HHHHHHHHHHHHHHHhc
Q 004829          399 MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA----RFD-------EAIFSYHKALTAFKSAK  467 (728)
Q Consensus       399 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~-------~A~~~~~~al~~~~~~~  467 (728)
                      .+.-++..|++-+|++..+..+...   +........+..-|.++..+.    +.+       .+++.|.++..+     
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h---~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-----   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRH---GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-----   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHc---cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----
Confidence            3567889999999999999876543   333333356666777776543    333       355555555555     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                         .|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus        74 ---sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   74 ---SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             ---ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence               7777888888877766666667777666666654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.65  E-value=6.6  Score=40.30  Aligned_cols=147  Identities=11%  Similarity=0.055  Sum_probs=95.8

Q ss_pred             CHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829          471 HPAVASVFVRLADLYHKIGK------------LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV  538 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  538 (728)
                      +|....++..+....-..-.            .+.-+.+|++|++.         +|.....+..+-.+.....+.++..
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~---------np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH---------NPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            77777777777766554432            34566788888887         2223344444445555666777777


Q ss_pred             HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----------cHHHHHHHHHHH
Q 004829          539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK----------SALFGIALNQMG  608 (728)
Q Consensus       539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la  608 (728)
                      ..+++++...+..    ..+...|...-......-.+......|.+++..+.......          ......++..+.
T Consensus        86 ~~we~~l~~~~~~----~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~  161 (321)
T PF08424_consen   86 KKWEELLFKNPGS----PELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC  161 (321)
T ss_pred             HHHHHHHHHCCCC----hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence            7788887764432    12222222222222334468899999999998877654432          233456777888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Q 004829          609 LACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       609 ~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      ....+.|-.+.|+..++-.+++
T Consensus       162 ~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  162 RFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHCCchHHHHHHHHHHHHH
Confidence            8888999999999999999887

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.64  E-value=10  Score=39.41  Aligned_cols=212  Identities=9%  Similarity=-0.007  Sum_probs=119.1

Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .+....+|+.....+...++-+.|+...++++...         |.   ....++.+|....+-+....+|+++.+....
T Consensus       298 ~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~s---------ps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r  365 (660)
T COG5107         298 FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMS---------PS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR  365 (660)
T ss_pred             hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCC---------Cc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence            55666777777777778888888888877776552         21   3455666666666666666666665543321


Q ss_pred             CC---------CC---CCcHH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004829          551 TP---------GQ---QSTIA-----------GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM  607 (728)
Q Consensus       551 ~~---------~~---~~~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  607 (728)
                      ..         +.   .....           .++..+-..-.+..-.+.|...|-++-+.    +-..+    .++..-
T Consensus       366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~----~~~~h----~vyi~~  437 (660)
T COG5107         366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE----GIVGH----HVYIYC  437 (660)
T ss_pred             HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc----CCCCc----ceeeeH
Confidence            10         00   00000           11111111122223344444444444332    21111    122222


Q ss_pred             H-HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 004829          608 G-LACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVED  686 (728)
Q Consensus       608 a-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~  686 (728)
                      | .-|...|++.-|...|+-.+..        +|+........-..+...++-+.|..+|+.++.....      .....
T Consensus       438 A~~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~------~q~k~  503 (660)
T COG5107         438 AFIEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK------TQLKR  503 (660)
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH------hhhhH
Confidence            2 2345678999999999988887        5555444444455667889999999999998875532      23345


Q ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHhhcc
Q 004829          687 EKRRLAELLKEAGRVRNRKSRSLVTFLDSNS  717 (728)
Q Consensus       687 ~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~  717 (728)
                      .+..+-.--..-|+...+. ..-+.+.+..|
T Consensus       504 iy~kmi~YEs~~G~lN~v~-sLe~rf~e~~p  533 (660)
T COG5107         504 IYDKMIEYESMVGSLNNVY-SLEERFRELVP  533 (660)
T ss_pred             HHHHHHHHHHhhcchHHHH-hHHHHHHHHcC
Confidence            5666666666777777766 44444444433

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.40  E-value=8.3  Score=37.58  Aligned_cols=134  Identities=11%  Similarity=0.063  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 004829          367 FDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSL  446 (728)
Q Consensus       367 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  446 (728)
                      -++-++-+.+.++-.+...  .....+.++.++|..|.+.++.+.+.+++.+.+.-....+-..+.......+|.+|..+
T Consensus        91 neeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~  168 (412)
T COG5187          91 NEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR  168 (412)
T ss_pred             hHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence            3444555655555444443  23455778999999999999999999999988877766666677777777888888776


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          447 ARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       447 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      .-..+.++.....++.     |++....-..-...|.......++.+|..++-..+..+..
T Consensus       169 ~vV~e~lE~~~~~iEk-----GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S  224 (412)
T COG5187         169 KVVEESLEVADDIIEK-----GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES  224 (412)
T ss_pred             HHHHHHHHHHHHHHHh-----CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence            6666666555555543     3444444444445566677778899999998888877655

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.39  E-value=4  Score=39.67  Aligned_cols=134  Identities=15%  Similarity=0.111  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q 004829          409 YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI  488 (728)
Q Consensus       409 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  488 (728)
                      -++-++-+.+.++-.+..+.......++.++|..|.+.++.+.+.+++.+.+.-.-..  +-..+...+-..||.+|..+
T Consensus        91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y~d~  168 (412)
T COG5187          91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIYGDR  168 (412)
T ss_pred             hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhhccH
Confidence            3455556655555555444456678899999999999999999999998887764433  22445556666777777655


Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          489 GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       489 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .-..+.++....   +.++   |.+....-..-...|.......++.+|..++..++..+..
T Consensus       169 ~vV~e~lE~~~~---~iEk---GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S  224 (412)
T COG5187         169 KVVEESLEVADD---IIEK---GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES  224 (412)
T ss_pred             HHHHHHHHHHHH---HHHh---CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence            444444444444   4333   3334433344444566667778888888888877765544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.33  E-value=12  Score=39.13  Aligned_cols=142  Identities=12%  Similarity=-0.008  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH-HHHHHHHHHcCChhHHHHHHHHhhhhhhhhc
Q 004829          222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCL-HVLAAIHCSLGQYNEAIPVLERSVEIPVLED  300 (728)
Q Consensus       222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  300 (728)
                      --.++..|-.+-.++ ++.+|...|.+..+-.+..    +..-.-..+ ..+-.+|+ +.+    +...+..+...+...
T Consensus         6 ~~llc~Qgf~Lqkq~-~~~esEkifskI~~e~~~~----~f~lkeEvl~grilnAff-l~n----ld~Me~~l~~l~~~~   75 (549)
T PF07079_consen    6 QYLLCFQGFILQKQK-KFQESEKIFSKIYDEKESS----PFLLKEEVLGGRILNAFF-LNN----LDLMEKQLMELRQQF   75 (549)
T ss_pred             HHHHHHhhHHHHHHh-hhhHHHHHHHHHHHHhhcc----hHHHHHHHHhhHHHHHHH-Hhh----HHHHHHHHHHHHHhc
Confidence            345777888888886 9999999999887653221    111011122 22233333 233    333333333332222


Q ss_pred             CCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHH-----------HHHHHHHHHHHHHhCCHHH
Q 004829          301 GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRV-----------GETCRYVAEAHVQSLQFDE  369 (728)
Q Consensus       301 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~  369 (728)
                      + ..+    ...+-.|...++.+.|.+|++.+..--.....    ..+..           ...-...|.++...|.|.+
T Consensus        76 ~-~s~----~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~----~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~E  146 (549)
T PF07079_consen   76 G-KSA----YLPLFKALVAYKQKEYRKALQALSVWKEQIKG----TESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSE  146 (549)
T ss_pred             C-Cch----HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcc----cccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcch
Confidence            3 222    13566788889999999999876543332111    11111           1122346888999999999


Q ss_pred             HHHHHHHHHHHHH
Q 004829          370 AEKICQMALDIHR  382 (728)
Q Consensus       370 A~~~~~~al~~~~  382 (728)
                      +...+.+.+...-
T Consensus       147 gR~iLn~i~~~ll  159 (549)
T PF07079_consen  147 GRAILNRIIERLL  159 (549)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999886543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.33  E-value=5.8  Score=35.60  Aligned_cols=150  Identities=15%  Similarity=0.106  Sum_probs=96.7

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHH
Q 004829          440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIAS  519 (728)
Q Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  519 (728)
                      |.-|+..++-..+-..|..+|++.                       ..+..++|+..|...-+.--    + ..  -..
T Consensus        46 gy~yw~~s~as~sgd~flaAL~lA-----------------------~~~k~d~Alaaf~~lektg~----g-~Y--pvL   95 (221)
T COG4649          46 GYTYWQTSRASKSGDAFLAALKLA-----------------------QENKTDDALAAFTDLEKTGY----G-SY--PVL   95 (221)
T ss_pred             eeehhcccccccchHHHHHHHHHH-----------------------HcCCchHHHHHHHHHHhcCC----C-cc--hHH
Confidence            445666777777777777777763                       23556677776665443311    1 12  234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHH
Q 004829          520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL  599 (728)
Q Consensus       520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  599 (728)
                      +....+.+....|+...|+.+|.++-.-.+-   .....-.....-+.++...|-|+.-.       ...+.+.....+.
T Consensus        96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~---P~~~rd~ARlraa~lLvD~gsy~dV~-------srvepLa~d~n~m  165 (221)
T COG4649          96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSI---PQIGRDLARLRAAYLLVDNGSYDDVS-------SRVEPLAGDGNPM  165 (221)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHhccCCC---cchhhHHHHHHHHHHHhccccHHHHH-------HHhhhccCCCChh
Confidence            5677888899999999999999876433211   11111122234466677777776543       3344444555666


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          600 FGIALNQMGLACVQRYTINEAADLFEEART  629 (728)
Q Consensus       600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  629 (728)
                      ...+...||..-++.|++..|...|.+...
T Consensus       166 R~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            677888999999999999999999998765

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.29  E-value=0.24  Score=32.10  Aligned_cols=36  Identities=28%  Similarity=0.264  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004829          644 GVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT  679 (728)
Q Consensus       644 ~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~  679 (728)
                      .++..||.+-...++|++|+.-|++++++.++.+.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            468889999999999999999999999999887654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.23  E-value=0.26  Score=31.91  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829          602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYG  636 (728)
Q Consensus       602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  636 (728)
                      .++..||.+-+..++|++|+.-|++++.+.++.+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~   36 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP   36 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            46788999999999999999999999999877643

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>smart00101 14_3_3 14-3-3 homologues

Probab=93.08  E-value=9.1  Score=37.15  Aligned_cols=182  Identities=12%  Similarity=0.076  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHc-CCCCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004829          478 FVRLADLYHKIGKLRDSKSYCENALKIYG-KPNHGIPSEEIASGLIDIAAIYQ-SMNELEQAVKLLNKALKIYGKTPGQQ  555 (728)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~  555 (728)
                      +..+|.+....++|++...+.++++.... ...       ...-.+.|..+|- ..|....+...+...-+ -....+..
T Consensus         4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eL-------t~EERnLLSvayKn~i~~~R~s~R~i~sie~-ke~~~~~~   75 (244)
T smart00101        4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEEL-------TVEERNLLSVAYKNVIGARRASWRIISSIEQ-KEESRGNE   75 (244)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccC-------CHHHHHHHHHHHhhhhcccHHHHHHHhHHHH-hhhccCch
Confidence            45678888899999999999999887632 111       1222334444443 24555666666554222 11111111


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHHHHHH-----cCC-----HHHHHH
Q 004829          556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK---SALFGIALNQMGLACVQ-----RYT-----INEAAD  622 (728)
Q Consensus       556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~-----~g~-----~~~A~~  622 (728)
                      ...     .+..-|. ..=-++-..++...+.+.....-+.   +......+-..|..|.-     .|+     .+.|..
T Consensus        76 ~~~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~  149 (244)
T smart00101       76 DHV-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV  149 (244)
T ss_pred             HHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            111     1111111 1112344556667777765542221   11112222223333332     222     568999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004829          623 LFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       623 ~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~  673 (728)
                      .|++|+++....+.+.||-......+.+..|+. +++.++|..+.++++.-.
T Consensus       150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999998888889999988888888776654 799999998888777654

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=92.65  E-value=11  Score=37.15  Aligned_cols=230  Identities=11%  Similarity=0.078  Sum_probs=104.2

Q ss_pred             HhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 004829          321 MLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMG  400 (728)
Q Consensus       321 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg  400 (728)
                      .+++|++|++++..+...                      +.+.|++..|.++..-.++.+.....+....   ....+.
T Consensus         2 ~~kky~eAidLL~~Ga~~----------------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~---~~~rl~   56 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSGALI----------------------LLKHGQYGSGADLALLLIEVYEKSEDPVDEE---SIARLI   56 (260)
T ss_dssp             HTT-HHHHHHHHHHHHHH----------------------HHHTT-HHHHHHHHHHHHHHHHHTT---SHH---HHHHHH
T ss_pred             ccccHHHHHHHHHHHHHH----------------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHH---HHHHHH
Confidence            356677777666555433                      4455555555555555555555443332221   123344


Q ss_pred             HHHHHcCCHH-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004829          401 LICDSKGDYE-AALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV  479 (728)
Q Consensus       401 ~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  479 (728)
                      .+....+.-+ +-..+..+++...............+..+|..|+..|++.+|..+|-.+-           .....++.
T Consensus        57 ~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-----------~~~~~~~~  125 (260)
T PF04190_consen   57 ELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-----------DPSAFAYV  125 (260)
T ss_dssp             HHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------------HHHHHHHH
T ss_pred             HHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-----------ChhHHHHH
Confidence            4444333222 23444555555553444455667888899999999999888888775431           11122221


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----hcCC---
Q 004829          480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY----GKTP---  552 (728)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~---  552 (728)
                      .+-......|...++-                       .........|...++...|...+..-.+..    +...   
T Consensus       126 ~ll~~~~~~~~~~e~d-----------------------lfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~  182 (260)
T PF04190_consen  126 MLLEEWSTKGYPSEAD-----------------------LFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSD  182 (260)
T ss_dssp             HHHHHHHHHTSS--HH-----------------------HHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEE
T ss_pred             HHHHHHHHhcCCcchh-----------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccc
Confidence            2222222233333221                       112222334666788888888777666552    2110   


Q ss_pred             ---CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC
Q 004829          553 ---GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY  615 (728)
Q Consensus       553 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  615 (728)
                         .....+......|-.+ +..+    +...|....+.++..-.. ++.....+..+|..|+...
T Consensus       183 ~~~~~~~PllnF~~lLl~t-~e~~----~~~~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~yFgi~  242 (260)
T PF04190_consen  183 IEYPPSYPLLNFLQLLLLT-CERD----NLPLFKKLCEKYKPSLKR-DPSFKEYLDKIGQLYFGIQ  242 (260)
T ss_dssp             EEEESS-HHHHHHHHHHHH-HHHT-----HHHHHHHHHHTHH---H-HHHTHHHHHHHHHHHH---
T ss_pred             cCCCCCCchHHHHHHHHHH-HhcC----cHHHHHHHHHHhCccccc-cHHHHHHHHHHHHHHCCCC
Confidence               0111111111112222 2333    235566655555443322 3445667778888887644

; PDB: 3LKU_E 2WPV_G.

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=92.52  E-value=8.4  Score=38.28  Aligned_cols=129  Identities=14%  Similarity=0.061  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHH
Q 004829          414 EHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRD  493 (728)
Q Consensus       414 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  493 (728)
                      +-+.+.++-...+........++.+.|..|.+.|+-+.|++.+.+..+-.-..  +..-+.......+|..|...   +-
T Consensus        85 ~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~---~l  159 (393)
T KOG0687|consen   85 KELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDH---DL  159 (393)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccH---HH
Confidence            33444444444443455677889999999999999999999998876653332  23455666667777777554   33


Q ss_pred             HHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          494 SKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       494 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      -.+..++|-.+.++   |.+....-..-..-|.......++.+|-.+|-.++..+..
T Consensus       160 V~~~iekak~liE~---GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS  213 (393)
T KOG0687|consen  160 VTESIEKAKSLIEE---GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS  213 (393)
T ss_pred             HHHHHHHHHHHHHh---CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence            33444455555544   3334433344444566667778888888888877765543

>PRK10941 hypothetical protein; Provisional

Probab=92.52  E-value=1.3  Score=43.80  Aligned_cols=82  Identities=13%  Similarity=0.082  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829          599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG  678 (728)
Q Consensus       599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~  678 (728)
                      .....+.++-.+|...++++.|+.+.+..+.+        .|+...-+...|.+|.++|.+..|..-++..++.+     
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----  245 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----  245 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence            35667888889999999999999999999998        77777778889999999999999999999999866     


Q ss_pred             CCChHHHHHHHHHHH
Q 004829          679 TANPDVEDEKRRLAE  693 (728)
Q Consensus       679 ~~~p~~~~~~~~La~  693 (728)
                      |+.|........+..
T Consensus       246 P~dp~a~~ik~ql~~  260 (269)
T PRK10941        246 PEDPISEMIRAQIHS  260 (269)
T ss_pred             CCchhHHHHHHHHHH
Confidence            555665555544443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=92.43  E-value=23  Score=40.09  Aligned_cols=31  Identities=16%  Similarity=0.114  Sum_probs=21.4

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKA  544 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  544 (728)
                      ....-.+....|.-....|++++|+.+|.-|
T Consensus       410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La  440 (613)
T PF04097_consen  410 EDFLREIIEQAAREAEERGRFEDAILLYHLA  440 (613)
T ss_dssp             SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4556666777777788888888888777643

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=92.38  E-value=13  Score=37.07  Aligned_cols=132  Identities=18%  Similarity=0.118  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Q 004829          326 ENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS  405 (728)
Q Consensus       326 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~  405 (728)
                      ++-++-+.+.++-..+.+|  .....+++...|..|.+.|+-+.|.+.+.+..+-.-..+..  +...-....+|..|  
T Consensus        81 eeki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k--iDVvf~~iRlglfy--  154 (393)
T KOG0687|consen   81 EEKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK--IDVVFYKIRLGLFY--  154 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHhh--
Confidence            3445555555555555444  34678899999999999999999999999888765544432  22222333444444  


Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          406 KGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFK  464 (728)
Q Consensus       406 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  464 (728)
                       ++.+--.+..++|-.+++..++....-..-..-|.......+|.+|..+|-.++..+.
T Consensus       155 -~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  155 -LDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT  212 (393)
T ss_pred             -ccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence             5566666677777777888887665555555666677777888888888877776544

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.25  E-value=3  Score=42.55  Aligned_cols=105  Identities=20%  Similarity=0.227  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc
Q 004829          310 AGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS  389 (728)
Q Consensus       310 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  389 (728)
                      .++..+|..|...|+++.|+.+|-++-..+..     .......+.++-.+-...|+|..-..+..++............
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q  225 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ  225 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence            46889999999999999999999998887755     4677888888888999999999888888877654211000000


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          390 IEEAADRRLMGLICDSKGDYEAALEHYVLA  419 (728)
Q Consensus       390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a  419 (728)
                      ...+.+...-|.+....++|..|..+|-.+
T Consensus       226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            000123444555666666888887777544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.09  E-value=3.8  Score=38.00  Aligned_cols=78  Identities=15%  Similarity=0.129  Sum_probs=56.7

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829          616 TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL  695 (728)
Q Consensus       616 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  695 (728)
                      .-++|...|.++-       +...-+.++..+.||..|. ..+.++|+.++-+++++.    .+++.-..+++..|+.++
T Consensus       121 ~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~----~~~~~~n~eil~sLas~~  188 (203)
T PF11207_consen  121 GDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS----NPDDNFNPEILKSLASIY  188 (203)
T ss_pred             CcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHH
Confidence            3355665554432       2223345668888888777 668899999999999965    334355678899999999


Q ss_pred             HHhCChhHHH
Q 004829          696 KEAGRVRNRK  705 (728)
Q Consensus       696 ~~~g~~~~A~  705 (728)
                      ..+|+++.|.
T Consensus       189 ~~~~~~e~AY  198 (203)
T PF11207_consen  189 QKLKNYEQAY  198 (203)
T ss_pred             HHhcchhhhh
Confidence            9999999986

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.04  E-value=8.8  Score=34.50  Aligned_cols=149  Identities=11%  Similarity=0.063  Sum_probs=99.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHH
Q 004829          482 ADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGI  561 (728)
Q Consensus       482 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  561 (728)
                      |.-|+..+.-..+-..|..+|++..                        .+..++|+..|....+   ...+..+  ...
T Consensus        46 gy~yw~~s~as~sgd~flaAL~lA~------------------------~~k~d~Alaaf~~lek---tg~g~Yp--vLA   96 (221)
T COG4649          46 GYTYWQTSRASKSGDAFLAALKLAQ------------------------ENKTDDALAAFTDLEK---TGYGSYP--VLA   96 (221)
T ss_pred             eeehhcccccccchHHHHHHHHHHH------------------------cCCchHHHHHHHHHHh---cCCCcch--HHH
Confidence            3345566666666666666666643                        3555677766664432   2223333  344


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829          562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL-FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH  640 (728)
Q Consensus       562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  640 (728)
                      ....+.+....|+...|+.+|.++-.-.     ..+.. ...+...-+.++...|-|++-..       ..+.+.++.+|
T Consensus        97 ~mr~at~~a~kgdta~AV~aFdeia~dt-----~~P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d~n~  164 (221)
T COG4649          97 RMRAATLLAQKGDTAAAVAAFDEIAADT-----SIPQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGDGNP  164 (221)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCCCCh
Confidence            5678999999999999999999875431     11111 12344555677778887766544       33344556688


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          641 DTLGVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       641 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                      -...+...||..-++.|++.+|..+|.+...
T Consensus       165 mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            8888889999999999999999999998876

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.94  E-value=5.3  Score=39.00  Aligned_cols=79  Identities=23%  Similarity=0.172  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 004829          602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTAN  681 (728)
Q Consensus       602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  681 (728)
                      ..+...+..|...|.+.+|+.+.++++.+        +|-....+..|-.++..+|+--.|...|++..+..+.-+|-+-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v  351 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV  351 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence            45666788899999999999999999999        9999999999999999999999999999999998888888655


Q ss_pred             hHHHHHH
Q 004829          682 PDVEDEK  688 (728)
Q Consensus       682 p~~~~~~  688 (728)
                      .+...-+
T Consensus       352 ddsieew  358 (361)
T COG3947         352 DDSIEEW  358 (361)
T ss_pred             chhHHHH
Confidence            5444433

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.75  E-value=15  Score=36.48  Aligned_cols=111  Identities=12%  Similarity=-0.026  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 004829          349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH  428 (728)
Q Consensus       349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  428 (728)
                      ....+...||.+|...++|..|-..+.-. .........+.-.....+..+|.+|...++..+|..+..++.-+.....+
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N  179 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN  179 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence            45667889999999999999887665422 11111111122234456778999999999999999999988665555444


Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKAL  460 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  460 (728)
                      +......-...|.++-..++|-+|...|.+..
T Consensus       180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444555677777778777776666543

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=91.61  E-value=42  Score=41.42  Aligned_cols=155  Identities=17%  Similarity=0.148  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC------------------------
Q 004829          393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR------------------------  448 (728)
Q Consensus       393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------------  448 (728)
                      ++....+|..+...|.+.+|+.+|..|+...+..+|....+.++-.++.+....+.                        
T Consensus       242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~  321 (1185)
T PF08626_consen  242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS  321 (1185)
T ss_pred             hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence            44567899999999999999999999999999999988888887777655432210                        


Q ss_pred             --------------------------------HHHHHHHHHHHHHHHHHhcC---CCCH--HHHHHHHHHHHHHHHcC--
Q 004829          449 --------------------------------FDEAIFSYHKALTAFKSAKG---ENHP--AVASVFVRLADLYHKIG--  489 (728)
Q Consensus       449 --------------------------------~~~A~~~~~~al~~~~~~~~---~~~~--~~~~~~~~la~~~~~~g--  489 (728)
                                                      ...-...+++++.+|.+...   +..|  -...+...++.++....  
T Consensus       322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~  401 (1185)
T PF08626_consen  322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS  401 (1185)
T ss_pred             CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Confidence                                            12223355666666665531   1122  24466777777777777  


Q ss_pred             ------------------ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          490 ------------------KLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       490 ------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                                        .-.++..++.+++.+.-..   -...+....+..+|.+|...|-..++.-+++.++...-.
T Consensus       402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~---l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~  477 (1185)
T PF08626_consen  402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD---LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVP  477 (1185)
T ss_pred             cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh---CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcc
Confidence                              6778888888888764331   246677899999999999999998888888887766543

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.08  E-value=4.2  Score=40.12  Aligned_cols=79  Identities=19%  Similarity=0.150  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004829          600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT  679 (728)
Q Consensus       600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~  679 (728)
                      ...++..++..+...|+++.++..+++.+..        +|..-..|..+-..|...|+...|+..|++.-....+-+|.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi  223 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI  223 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence            4578889999999999999999999999998        99989999999999999999999999999999987777775


Q ss_pred             CChHHHH
Q 004829          680 ANPDVED  686 (728)
Q Consensus       680 ~~p~~~~  686 (728)
                      ..+....
T Consensus       224 ~P~~~~~  230 (280)
T COG3629         224 DPAPELR  230 (280)
T ss_pred             CccHHHH
Confidence            5444433

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.97  E-value=2.4  Score=44.21  Aligned_cols=73  Identities=23%  Similarity=0.342  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          268 CLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ  341 (728)
Q Consensus       268 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  341 (728)
                      ++..|.++++-+|+|..|++.++. +++.....-...+...+.+++.+|-+|..+++|.+|+..|...+-...+
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r  196 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR  196 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677888999999999998876 3333222222333445667999999999999999999999998877544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.96  E-value=5.5  Score=36.98  Aligned_cols=81  Identities=19%  Similarity=0.107  Sum_probs=57.4

Q ss_pred             HcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004829          278 SLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV  357 (728)
Q Consensus       278 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  357 (728)
                      ..-.-++|...|-++-.-.        ....+...+.||..|. ..+.++|+.++.+++++..    +++.-..+.+..|
T Consensus       118 sr~~d~~A~~~fL~~E~~~--------~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sL  184 (203)
T PF11207_consen  118 SRFGDQEALRRFLQLEGTP--------ELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSL  184 (203)
T ss_pred             hccCcHHHHHHHHHHcCCC--------CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHH
Confidence            3333466777666544221        1123445788888776 6789999999999999953    3335567889999


Q ss_pred             HHHHHHhCCHHHHH
Q 004829          358 AEAHVQSLQFDEAE  371 (728)
Q Consensus       358 a~~~~~~g~~~~A~  371 (728)
                      +.+|..+|+++.|-
T Consensus       185 as~~~~~~~~e~AY  198 (203)
T PF11207_consen  185 ASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHhcchhhhh
Confidence            99999999999874

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=90.85  E-value=1.4  Score=31.03  Aligned_cols=38  Identities=13%  Similarity=0.039  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829          602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYS  647 (728)
Q Consensus       602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  647 (728)
                      ..++.+|..+.+.|+|++|..+.+.++++        .|+...+..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~   39 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHH
Confidence            36788999999999999999999999999        776655543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=90.77  E-value=1.3  Score=31.24  Aligned_cols=37  Identities=22%  Similarity=0.068  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 004829          311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCR  355 (728)
Q Consensus       311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  355 (728)
                      +++.+|..++.+|+|++|..+.+.+|++        +|....+..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~   39 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHH
Confidence            4789999999999999999999999999        666655443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.52  E-value=2.6  Score=37.52  Aligned_cols=87  Identities=10%  Similarity=-0.033  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829          431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH  510 (728)
Q Consensus       431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  510 (728)
                      .....+..+..+-...++.+++...+.-..-+        .|.....-..-|.++...|++.+|+.+++.+..-      
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------   73 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER------   73 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------
Confidence            34455666666777777888877777665555        7777777777888888888888888888875443      


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCH
Q 004829          511 GIPSEEIASGLIDIAAIYQSMNEL  534 (728)
Q Consensus       511 ~~~~~~~~~~~~~la~~~~~~g~~  534 (728)
                         .+....+--.++.++..+|+.
T Consensus        74 ---~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   74 ---APGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             ---CCCChHHHHHHHHHHHHcCCh
Confidence               222334445566677766664

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=90.21  E-value=26  Score=36.60  Aligned_cols=233  Identities=11%  Similarity=0.088  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Q 004829          265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLG  344 (728)
Q Consensus       265 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  344 (728)
                      ....|+.....+...++-+.|+...++++...        |.    ..+.++.+|....+-+.-..+|+++.+...+.+.
T Consensus       301 ~~evw~dys~Y~~~isd~q~al~tv~rg~~~s--------ps----L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys  368 (660)
T COG5107         301 AEEVWFDYSEYLIGISDKQKALKTVERGIEMS--------PS----LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYS  368 (660)
T ss_pred             hHHHHHHHHHHHhhccHHHHHHHHHHhcccCC--------Cc----hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHh
Confidence            35556666777778889999999999888653        21    2678889998888888888888888765433211


Q ss_pred             CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          345 ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMA  424 (728)
Q Consensus       345 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  424 (728)
                      .......         -...|+++...+++-+-..   +        ..-++..+-..-.+..-.+.|...|-++-..- 
T Consensus       369 ~~~s~~~---------s~~D~N~e~~~Ell~kr~~---k--------~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~-  427 (660)
T COG5107         369 MGESESA---------SKVDNNFEYSKELLLKRIN---K--------LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG-  427 (660)
T ss_pred             hhhhhhh---------ccccCCccccHHHHHHHHh---h--------hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC-
Confidence            1000000         0002333222222211111   0        01122222233333444556666666553221 


Q ss_pred             hcCCChhHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          425 ANGHELDVASIDCSIG-DAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALK  503 (728)
Q Consensus       425 ~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  503 (728)
                      ..+.+     +|..-| .-|...|++.-|...|+-.+..        .++........-..+...++-..|..+|++++.
T Consensus       428 ~~~h~-----vyi~~A~~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~  494 (660)
T COG5107         428 IVGHH-----VYIYCAFIEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVE  494 (660)
T ss_pred             CCCcc-----eeeeHHHHHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence            00111     111111 2356678888888888877776        444433334444556778888899999998887


Q ss_pred             HHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          504 IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      ..++.       ....+|..+...-..-|+...+..+=++....+++
T Consensus       495 r~~~~-------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ  534 (660)
T COG5107         495 RLEKT-------QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ  534 (660)
T ss_pred             HHHHh-------hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence            75441       24455666666666667777766666655555443

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.98  E-value=23  Score=38.18  Aligned_cols=175  Identities=13%  Similarity=0.067  Sum_probs=101.9

Q ss_pred             cCChhHHHHHHHHhhhhhhhhc----CCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC--------
Q 004829          279 LGQYNEAIPVLERSVEIPVLED----GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGET--------  346 (728)
Q Consensus       279 ~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------  346 (728)
                      ...|++|...|.-+........    -..+ +.-+..++.++.++..+|+.+-|..+.+++|=.....+.+.        
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ss-PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISS-PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccC-CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            4557888888887776542100    0111 22355699999999999999999999999987776654221        


Q ss_pred             -----ChH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          347 -----DHR---VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVL  418 (728)
Q Consensus       347 -----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~  418 (728)
                           .|.   ...+++..-..+.+.|-+..|.++++-.+.+.+......      +.+.+-....+..+|+=-+..++.
T Consensus       330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~------~l~~ID~~ALrareYqwiI~~~~~  403 (665)
T KOG2422|consen  330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG------ILYLIDIYALRAREYQWIIELSNE  403 (665)
T ss_pred             cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh------HHHHHHHHHHHHHhHHHHHHHHHH
Confidence                 122   223334444556678999999999999888776532111      222233333344444444444433


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHH
Q 004829          419 ASMSMAANGHELDVASIDCSIGDAYLSLAR---FDEAIFSYHKALTA  462 (728)
Q Consensus       419 al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  462 (728)
                      . +........|..... ..+|..|.....   -..|...+.+|+.+
T Consensus       404 ~-e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~  448 (665)
T KOG2422|consen  404 P-ENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKH  448 (665)
T ss_pred             H-HhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence            2 111111222332222 244555555554   56788888888887

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=89.97  E-value=8.4  Score=47.31  Aligned_cols=154  Identities=16%  Similarity=0.150  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC----C------------------
Q 004829          517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG----N------------------  574 (728)
Q Consensus       517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g----~------------------  574 (728)
                      ..+....+|.+|...|.+.+|+..|.+|+.+.+.. ++..+.+.++-.++.+....+    +                  
T Consensus       241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~-~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~  319 (1185)
T PF08626_consen  241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS-NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS  319 (1185)
T ss_pred             hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc-CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence            45667779999999999999999999999998876 666666666655554432111    0                  


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHHHHhC----C-CCcHHHHHHHHHHHHHHHHcC
Q 004829          575 ----------------------------------YSDSYNTLKSAISKFRTSG----E-KKSALFGIALNQMGLACVQRY  615 (728)
Q Consensus       575 ----------------------------------~~~A~~~~~~al~~~~~~~----~-~~~~~~~~~~~~la~~~~~~g  615 (728)
                                                        ...-...+++++..+....    + ........+...++.++....
T Consensus       320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~  399 (1185)
T PF08626_consen  320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH  399 (1185)
T ss_pred             ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence                                              1112234555555555442    1 112345667777788777777


Q ss_pred             --------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          616 --------------------TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       616 --------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                                          ...++..++.+++.+.-...  ...+....+..+|.+|...|-..++.-+++.++...
T Consensus       400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~  475 (1185)
T PF08626_consen  400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL  475 (1185)
T ss_pred             cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence                                77888888888887643322  244667899999999999999988888887776655

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>smart00028 TPR Tetratricopeptide repeats

Probab=89.95  E-value=0.38  Score=28.99  Aligned_cols=31  Identities=19%  Similarity=0.437  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829          519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYG  549 (728)
Q Consensus       519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  549 (728)
                      .++..+|.++...+++++|...+++++++.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            4578899999999999999999999987643

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.71  E-value=4.4  Score=41.45  Aligned_cols=113  Identities=18%  Similarity=0.124  Sum_probs=77.2

Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829          427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (728)
                      ......-.++..+|..|...|+++.|++.|-++.+.+..     .......+.++-.+-..+|+|..-..+..+|.....
T Consensus       144 ~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~  218 (466)
T KOG0686|consen  144 LIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPD  218 (466)
T ss_pred             hhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCch
Confidence            334455667889999999999999999999998777654     455677888888888899999888888887766521


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKAL  545 (728)
Q Consensus       507 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  545 (728)
                      ... .......+.+...-|.+.+.+++|..|..+|-.+.
T Consensus       219 ~~~-~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  219 ANE-NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhh-hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            000 00011112233444555556668888888876543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.49  E-value=3.8  Score=35.88  Aligned_cols=83  Identities=17%  Similarity=0.117  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP  682 (728)
Q Consensus       603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p  682 (728)
                      .+..+..+-...++++++..++....-+        .|....+-..-|.++...|++.+|+..|+...+        .-+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~--------~~~   75 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLS--------SAG   75 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc--------cCC
Confidence            3444445555588899988888766666        778887888889999999999999999998776        222


Q ss_pred             HHHHHHHHHHHHHHHhCCh
Q 004829          683 DVEDEKRRLAELLKEAGRV  701 (728)
Q Consensus       683 ~~~~~~~~La~~~~~~g~~  701 (728)
                      ...-..-.++.++..+|+.
T Consensus        76 ~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        76 APPYGKALLALCLNAKGDA   94 (153)
T ss_pred             CchHHHHHHHHHHHhcCCh
Confidence            3334444556666666653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>smart00028 TPR Tetratricopeptide repeats

Probab=89.36  E-value=0.46  Score=28.60  Aligned_cols=29  Identities=28%  Similarity=0.348  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          602 IALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      .++..+|.++...+++++|+..|++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            36788999999999999999999999876

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.31  E-value=5.1  Score=41.13  Aligned_cols=65  Identities=17%  Similarity=0.289  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      +-..|..||+.+++.+.|+.+..+.+.+        +|....-+...|.++..+.+|.+|..-+--+.-++--
T Consensus       230 Ietklv~CYL~~rkpdlALnh~hrsI~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl  294 (569)
T PF15015_consen  230 IETKLVTCYLRMRKPDLALNHSHRSINL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWL  294 (569)
T ss_pred             HHHHHHHhhhhcCCCchHHHHHhhhhhc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567889999999999999999999998        8888888999999999999999998887777666543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=89.25  E-value=2.1  Score=36.60  Aligned_cols=72  Identities=19%  Similarity=0.130  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcc
Q 004829          642 TLGVYSNLAGTYDAMGRI---DDAIEILEYVVGMREEKLGTANPD-VEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNS  717 (728)
Q Consensus       642 ~~~~~~~La~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~  717 (728)
                      .....+++|+++....+.   .+.+.+++..+.       ..||+ ..+..+.||.-+.+.|+|+.++ ++++.+++..|
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~-~yvd~ll~~e~  102 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSL-RYVDALLETEP  102 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHH-HHHHHHHhhCC
Confidence            355778999999876654   445555555543       24454 4778899999999999999999 99999999998


Q ss_pred             cccc
Q 004829          718 QNLK  721 (728)
Q Consensus       718 ~~~~  721 (728)
                      ++-.
T Consensus       103 ~n~Q  106 (149)
T KOG3364|consen  103 NNRQ  106 (149)
T ss_pred             CcHH
Confidence            7643

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.08  E-value=20  Score=40.43  Aligned_cols=49  Identities=6%  Similarity=0.091  Sum_probs=35.6

Q ss_pred             HHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY  548 (728)
Q Consensus       498 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  548 (728)
                      |.-|+.+++..  +.+......++...|..++..|++++|...|-+++...
T Consensus       350 y~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  350 YKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            33344444432  23455678888899999999999999999999887543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.98  E-value=16  Score=39.27  Aligned_cols=25  Identities=16%  Similarity=0.068  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          520 GLIDIAAIYQSMNELEQAVKLLNKA  544 (728)
Q Consensus       520 ~~~~la~~~~~~g~~~~A~~~~~~a  544 (728)
                      .|..||.....+|+++-|..+|+++
T Consensus       349 ~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  349 KWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            5666666666666666666666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=88.88  E-value=11  Score=34.12  Aligned_cols=148  Identities=14%  Similarity=0.137  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh-
Q 004829          373 ICQMALDIHRENTSPASIEEAADRRLMGLICD-----SKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSL-  446 (728)
Q Consensus       373 ~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-  446 (728)
                      .|+.|..++..+-+....  +...+.+|..++     ..+++..|++.+..+..        .....+..++|.++..- 
T Consensus        50 nF~~A~kv~K~nCden~y--~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~aC~~~gLl~~~g~  119 (248)
T KOG4014|consen   50 NFQAAVKVFKKNCDENSY--PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQACRYLGLLHWNGE  119 (248)
T ss_pred             HHHHHHHHHHhcccccCC--cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHHHhhhhhhhccCc
Confidence            345555555444433221  233555665444     34578889999887763        33455667777776542 


Q ss_pred             ----C--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH------------------------HHcCChHHHHH
Q 004829          447 ----A--RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY------------------------HKIGKLRDSKS  496 (728)
Q Consensus       447 ----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~------------------------~~~g~~~~A~~  496 (728)
                          +  +..+|++++.++-++          ....+.+.|...|                        ....+.+.|.+
T Consensus       120 ~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q  189 (248)
T KOG4014|consen  120 KDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ  189 (248)
T ss_pred             CCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence                2  367888888887664          1122333333333                        33355667777


Q ss_pred             HHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcC
Q 004829          497 YCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS----MNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       497 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  551 (728)
                      +.-+|.++.           ...+..++.+.|..    -.+.++|..+-.+|.++....
T Consensus       190 fa~kACel~-----------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~  237 (248)
T KOG4014|consen  190 FAIKACELD-----------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL  237 (248)
T ss_pred             HHHHHHhcC-----------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence            776666651           34556666666653    235788888888888887654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.82  E-value=3.5  Score=31.43  Aligned_cols=51  Identities=12%  Similarity=0.148  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004829          221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVL  272 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l  272 (728)
                      .+..+...|..+-..| ++++|+.+|+.++..+.+.....|+......+...
T Consensus         5 ~A~~~a~~AVe~D~~g-r~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~k   55 (75)
T cd02682           5 MARKYAINAVKAEKEG-NAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQM   55 (75)
T ss_pred             HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            4566788888888997 99999999999999998887666665444434333

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=88.51  E-value=12  Score=31.34  Aligned_cols=75  Identities=11%  Similarity=0.049  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829          604 LNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD-------TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK  676 (728)
Q Consensus       604 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~  676 (728)
                      +..+|...++.+++-.++-.|++|+.+.++.......+       .+....+||..|..+|+.+-.++|++-|-+....+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            45678888899999999999999999988874221111       13356799999999999999999999887766555


Q ss_pred             cC
Q 004829          677 LG  678 (728)
Q Consensus       677 ~~  678 (728)
                      ..
T Consensus        84 iP   85 (140)
T PF10952_consen   84 IP   85 (140)
T ss_pred             cc
Confidence            44

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=88.45  E-value=3.3  Score=41.62  Aligned_cols=66  Identities=11%  Similarity=0.085  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829          309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC  374 (728)
Q Consensus       309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  374 (728)
                      +.-+...|+-.+.+++++.|...|..|..+...++|..+.....+++..|..++..+++....-..
T Consensus        41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n  106 (400)
T KOG4563|consen   41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN  106 (400)
T ss_pred             HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            445788899999999999999999999999999999999999999999999999998887665433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.12  E-value=8  Score=41.48  Aligned_cols=159  Identities=15%  Similarity=0.073  Sum_probs=85.1

Q ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHH
Q 004829          231 EMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFA  310 (728)
Q Consensus       231 ~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  310 (728)
                      ....++ ++++++...... .+++.+      |  ..-...++..+.+.|-++.|+.+.+.             +..   
T Consensus       270 ~av~~~-d~~~v~~~i~~~-~ll~~i------~--~~~~~~i~~fL~~~G~~e~AL~~~~D-------------~~~---  323 (443)
T PF04053_consen  270 TAVLRG-DFEEVLRMIAAS-NLLPNI------P--KDQGQSIARFLEKKGYPELALQFVTD-------------PDH---  323 (443)
T ss_dssp             HHHHTT--HHH-----HHH-HTGGG----------HHHHHHHHHHHHHTT-HHHHHHHSS--------------HHH---
T ss_pred             HHHHcC-Chhhhhhhhhhh-hhcccC------C--hhHHHHHHHHHHHCCCHHHHHhhcCC-------------hHH---
Confidence            344554 788877666311 111111      1  11245567777888888888765432             111   


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829          311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI  390 (728)
Q Consensus       311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  390 (728)
                       .+   .+....|+++.|.+...+             ......|..||.....+|+++-|+.+|+++-+           
T Consensus       324 -rF---eLAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------  375 (443)
T PF04053_consen  324 -RF---ELALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-----------  375 (443)
T ss_dssp             -HH---HHHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------
T ss_pred             -Hh---HHHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------
Confidence             22   333467888887765542             23445899999999999999999999988754           


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKA  459 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  459 (728)
                           +..|..+|...|+.+.-.+....+.    ..++       +...-.+++.+|+.++.++.+.++
T Consensus       376 -----~~~L~lLy~~~g~~~~L~kl~~~a~----~~~~-------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  376 -----FSGLLLLYSSTGDREKLSKLAKIAE----ERGD-------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             -----HHHHHHHHHHCT-HHHHHHHHHHHH----HTT--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             -----ccccHHHHHHhCCHHHHHHHHHHHH----HccC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence                 3456667777888655444433332    1111       111223455667777777666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.94  E-value=25  Score=36.47  Aligned_cols=119  Identities=15%  Similarity=0.013  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHHcCC---hhHHHHHHHHhhhhh
Q 004829          222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGK--PSLEQVMCLHVLAAIHCSLGQ---YNEAIPVLERSVEIP  296 (728)
Q Consensus       222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~  296 (728)
                      +--++..|+.++.. +.|.+|+.++-.|-+.|-.+...-  .-...+..-..+-+||+.+.+   ..+|..-+.++-+-+
T Consensus       163 glg~hekaRa~m~r-e~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf  241 (568)
T KOG2561|consen  163 GLGLHEKARAAMER-EMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF  241 (568)
T ss_pred             HHhHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence            44578889999999 599999999988887775542100  001123333445777877766   345555444444333


Q ss_pred             hhhc-----------CCchhHh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          297 VLED-----------GQDHALA--KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ  341 (728)
Q Consensus       297 ~~~~-----------~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  341 (728)
                      ....           +...|..  ....++.-|.+.+++|+-++|.++++.+......
T Consensus       242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e  299 (568)
T KOG2561|consen  242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE  299 (568)
T ss_pred             hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            2222           2222221  2334556677777778888887777777665544

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=87.92  E-value=54  Score=37.22  Aligned_cols=406  Identities=11%  Similarity=0.011  Sum_probs=199.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHH--HHH-HHhCCHHHHHHHHHHHHHHHHHH
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLG--DTY-AMLGQIENSILCYTAGLEIQRQV  342 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la--~~~-~~~g~~~~A~~~~~~al~~~~~~  342 (728)
                      ..++..|-.++...|++++-...-.++.++.     +..+..    |....  .++ ...+.-.++...|++++.-+..+
T Consensus       113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-----pl~~~l----Wl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v  183 (881)
T KOG0128|consen  113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-----PLPPHL----WLEWLKDELSMTQSEERKEVEELFEKALGDYNSV  183 (881)
T ss_pred             hHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-----CCChHH----HHHHHHHHHhhccCcchhHHHHHHHHHhcccccc
Confidence            4445566777788888877665555555554     333322    22221  222 22367778888888887653211


Q ss_pred             cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          343 LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMS  422 (728)
Q Consensus       343 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~  422 (728)
                        ......+......+..+...++++.-...|.+++........ .....+.++..+-..|...-..++-+.++...+..
T Consensus       184 --~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~  260 (881)
T KOG0128|consen  184 --PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ  260 (881)
T ss_pred             --hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence              001122223333344456667888999999999876544433 22233444555555666555556666666655433


Q ss_pred             HHhcCCChhHHHHHHHHH--H-HHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004829          423 MAANGHELDVASIDCSIG--D-AYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE  499 (728)
Q Consensus       423 ~~~~~~~~~~~~~~~~la--~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  499 (728)
                      -   -+.......|+...  . ......+++.|..-+.+.+..+...... .+.....+..+-......|....-...++
T Consensus       261 ~---~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~e  336 (881)
T KOG0128|consen  261 P---LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEE  336 (881)
T ss_pred             c---chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            1   11111122222222  1 1223455666666655555544443211 23333444555555556676655555555


Q ss_pred             HHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHHhcCCCCCCc----HHH---
Q 004829          500 NALKIYGKPNHGIPSEEIASGLIDIAAIYQS------------MNELEQAVKLLNKALKIYGKTPGQQST----IAG---  560 (728)
Q Consensus       500 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~---  560 (728)
                      +++.-...      .+.....|......-++            .+...-...++++++-.+.........    +..   
T Consensus       337 R~~~E~~~------~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls  410 (881)
T KOG0128|consen  337 RAVAEMVL------DRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLS  410 (881)
T ss_pred             HHHHhccc------cHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence            55443211      11111111111111010            111111222333333222221010000    000   


Q ss_pred             ---HHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 004829          561 ---IEAQMGVMYYM-------TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ-RYTINEAADLFEEART  629 (728)
Q Consensus       561 ---~~~~la~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~  629 (728)
                         .+++....|++       ..+++.-.+.|+.|...+....+.........+...|.++.. +++.+.|..++...+.
T Consensus       411 ~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt  490 (881)
T KOG0128|consen  411 MTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT  490 (881)
T ss_pred             HHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence               01112222221       224455556677777666665444222234455555655554 3567777776665544


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHhCChhHHHH
Q 004829          630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD-VEDEKRRLAELLKEAGRVRNRKS  706 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La~~~~~~g~~~~A~~  706 (728)
                      .       .....+..|.....+-...|+...|..++++|+.-      ...|+ ...++..+-......|.++....
T Consensus       491 y-------~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~------~~~~~~~~ev~~~~~r~Ere~gtl~~~~~  555 (881)
T KOG0128|consen  491 Y-------GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ------VVDPEDALEVLEFFRRFEREYGTLESFDL  555 (881)
T ss_pred             C-------CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc------CcCchhHHHHHHHHHHHHhccccHHHHhh
Confidence            3       23344446666677777789999999988888753      23443 55666666777777888877763

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.91  E-value=0.65  Score=27.13  Aligned_cols=24  Identities=29%  Similarity=0.223  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHH
Q 004829          645 VYSNLAGTYDAMGRIDDAIEILEY  668 (728)
Q Consensus       645 ~~~~La~~~~~~g~~~~A~~~~~~  668 (728)
                      +.+.||.++..+|++++|...+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            678899999999999999998763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.85  E-value=0.74  Score=26.90  Aligned_cols=24  Identities=29%  Similarity=0.245  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHH
Q 004829          268 CLHVLAAIHCSLGQYNEAIPVLER  291 (728)
Q Consensus       268 ~~~~la~~~~~~g~~~~A~~~~~~  291 (728)
                      ++..+|..+...|++++|...+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            467899999999999999998864

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.49  E-value=12  Score=38.45  Aligned_cols=63  Identities=10%  Similarity=0.004  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829          311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH  381 (728)
Q Consensus       311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  381 (728)
                      +.-.|..||..+++.+-|+....+.+.+        +|....-+...|.++..+.+|.+|-.-+--+.-++
T Consensus       230 Ietklv~CYL~~rkpdlALnh~hrsI~l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy  292 (569)
T PF15015_consen  230 IETKLVTCYLRMRKPDLALNHSHRSINL--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY  292 (569)
T ss_pred             HHHHHHHhhhhcCCCchHHHHHhhhhhc--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4668899999999999999999999888        78888888889999999999999877665554433

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=87.05  E-value=39  Score=35.57  Aligned_cols=140  Identities=14%  Similarity=0.064  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829          519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM--GVMYYMTGNYSDSYNTLKSAISKFRTSGEKK  596 (728)
Q Consensus       519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  596 (728)
                      ......+..++..++|..|...+......   .++...  ...+..+  |..++..-++.+|.++++..+.....+    
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l----  202 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL----  202 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence            34556677788999999999999998765   222222  2344444  444577889999999999887652110    


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE  675 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~  675 (728)
                       ......+..+..+       -++...+...............+....-++..|.--...|+|+.|+..+-+++++.-+
T Consensus       203 -~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q  273 (379)
T PF09670_consen  203 -NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ  273 (379)
T ss_pred             -HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence             0001111111111       1222222222221111000001122223333444445689999999999999887654

>PRK10941 hypothetical protein; Provisional

Probab=86.77  E-value=6.9  Score=38.71  Aligned_cols=69  Identities=9%  Similarity=0.001  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      -....+.++-.+|...++++.|+.+.+..+.+        .|....-+...|.+|.++|.+..|...++..++.+..
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence            44567788889999999999999999999998        7777788888999999999999999999999988533

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.64  E-value=64  Score=36.72  Aligned_cols=49  Identities=10%  Similarity=-0.030  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhh
Q 004829          246 AKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIP  296 (728)
Q Consensus       246 ~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  296 (728)
                      |.-|+.+.+..  ..+....+.++...|..++..|++++|...|-+.+...
T Consensus       350 y~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  350 YKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            33444444443  23334567777888999999999999999999888653

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=86.30  E-value=17  Score=39.07  Aligned_cols=85  Identities=13%  Similarity=0.103  Sum_probs=56.9

Q ss_pred             ChhHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829          429 ELDVASIDCSIGDAYLS--LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (728)
                      -.....++.+||.+-..  ...-..++.+|.+|+...+..++..|   ..-|..+|..|++.++|.+|+..+-.+-+..+
T Consensus       273 l~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~  349 (618)
T PF05053_consen  273 LARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIR  349 (618)
T ss_dssp             TTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT
T ss_pred             hhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666665432  23356789999999999999875433   45678899999999999999999999988887


Q ss_pred             CCCCCCCcHH
Q 004829          507 KPNHGIPSEE  516 (728)
Q Consensus       507 ~~~~~~~~~~  516 (728)
                      ......++.+
T Consensus       350 ~YnY~reDeE  359 (618)
T PF05053_consen  350 KYNYSREDEE  359 (618)
T ss_dssp             TSB--GGGHH
T ss_pred             HcccCccHHH
Confidence            7654333333

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=86.09  E-value=66  Score=36.41  Aligned_cols=31  Identities=13%  Similarity=0.112  Sum_probs=19.0

Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENA  501 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  501 (728)
                      ......+....|.-....|++++|+.+|.-+
T Consensus       410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La  440 (613)
T PF04097_consen  410 EDFLREIIEQAAREAEERGRFEDAILLYHLA  440 (613)
T ss_dssp             SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3444555566677777777777777666643

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>smart00101 14_3_3 14-3-3 homologues

Probab=85.95  E-value=36  Score=33.14  Aligned_cols=181  Identities=14%  Similarity=0.071  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH-HhcCCCh
Q 004829          354 CRYVAEAHVQSLQFDEAEKICQMALDIH-RENTSPASIEEAADRRLMGLICD-SKGDYEAALEHYVLASMSM-AANGHEL  430 (728)
Q Consensus       354 ~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~-~~~~~~~  430 (728)
                      +..+|.+..+.++|++...+..++.... +.....      .-.+.|..+|- ..|....+...+.. ++.- ...+...
T Consensus         4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~------EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~~   76 (244)
T smart00101        4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTV------EERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNED   76 (244)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCH------HHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCchH
Confidence            4557888889999999999999987752 111111      11334444443 24556666666554 2111 1111111


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHc-----CC-----hHHHHHH
Q 004829          431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH---PAVASVFVRLADLYHKI-----GK-----LRDSKSY  497 (728)
Q Consensus       431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~~  497 (728)
                      ..     .+..-|. ..--++-...+...+.+....+-+..   ...+..+-..|..|...     |+     .+.|...
T Consensus        77 ~~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a  150 (244)
T smart00101       77 HV-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA  150 (244)
T ss_pred             HH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            11     1111111 11123445566777777665543321   22233333445555433     22     4588999


Q ss_pred             HHHHHHHHcCCCCCCCcHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 004829          498 CENALKIYGKPNHGIPSEEIASGLIDIAAI-YQSMNELEQAVKLLNKALKIY  548 (728)
Q Consensus       498 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~  548 (728)
                      |+.|+++.....+ +.+|-......+.+.. |.-+++.++|..+.++|+.-.
T Consensus       151 Y~~A~e~a~~~L~-pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      151 YKSAQDIALAELP-PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHHccCC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999876443 3455444444555554 445799999988777766543

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=85.58  E-value=1.4  Score=41.30  Aligned_cols=56  Identities=18%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          610 ACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       610 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      ...+.++.+.|.+.|.+++.+        -|+....|+.+|....+.|+++.|...|++.+++.
T Consensus         4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld   59 (287)
T COG4976           4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD   59 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence            445678999999999999999        89999999999999999999999999999999863

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.49  E-value=13  Score=36.81  Aligned_cols=71  Identities=13%  Similarity=0.044  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 004829          308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS  386 (728)
Q Consensus       308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  386 (728)
                      .+.++..++..+...|+++.++..+++.+..        +|..-..|..+-..|...|+...|+..|++.-.......+
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg  222 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG  222 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence            4456889999999999999999999999988        8888899999999999999999999999999886544443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=85.39  E-value=4.6  Score=42.65  Aligned_cols=90  Identities=18%  Similarity=0.095  Sum_probs=63.0

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829          616 TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL  695 (728)
Q Consensus       616 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  695 (728)
                      ....|+..|.+++..        .|.....+.+.|.++.+.+=...+...++.+....     .-+|....+++.|++++
T Consensus       389 ~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al-----rln~s~~kah~~la~aL  455 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL-----RLNPSIQKAHFRLARAL  455 (758)
T ss_pred             HHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc-----cCChHHHHHHHHHHHHH
Confidence            456677778887776        66777777788888877654444444444333221     14578888889999999


Q ss_pred             HHhCChhHHHHHHHHHHHhhcccc
Q 004829          696 KEAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       696 ~~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      ..++++.+|+ .+...+.-.+|..
T Consensus       456 ~el~r~~eal-~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  456 NELTRYLEAL-SCHWALQMSFPTD  478 (758)
T ss_pred             HHHhhHHHhh-hhHHHHhhcCchh
Confidence            9999999988 7777777777744

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=85.38  E-value=14  Score=31.11  Aligned_cols=74  Identities=18%  Similarity=0.121  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          436 DCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH-------PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       436 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      +..+|...+..+++-.++-+|++|+.+.++......       .-......+||..+..+|+.+=.++|++-|-+.....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            345677777777888888888888877766521111       1123456789999999999999999999877665444


Q ss_pred             C
Q 004829          509 N  509 (728)
Q Consensus       509 ~  509 (728)
                      .
T Consensus        84 i   84 (140)
T PF10952_consen   84 I   84 (140)
T ss_pred             c
Confidence            3

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=85.28  E-value=1  Score=42.17  Aligned_cols=64  Identities=16%  Similarity=0.207  Sum_probs=55.8

Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccccC
Q 004829          651 GTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKED  723 (728)
Q Consensus       651 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~~~  723 (728)
                      ......++.+.|.+.|.+++++.        |+....+++++....+.|+++.|. +.+++.++.+|...-..
T Consensus         3 ~~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa-~a~~~~L~ldp~D~~ga   66 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAA-AAYEEVLELDPEDHGGA   66 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHH-HHHHHHHcCCcccccch
Confidence            34567789999999999999965        889999999999999999999999 99999999998765443

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.99  E-value=6.8  Score=30.24  Aligned_cols=50  Identities=18%  Similarity=0.130  Sum_probs=37.7

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004829          221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHV  271 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~  271 (728)
                      .+..+...|..+-..| +|++|+.+|.+++..|.......+++..-..+..
T Consensus         5 ~a~~l~~~Ave~D~~g-~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~   54 (77)
T cd02683           5 AAKEVLKRAVELDQEG-RFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQ   54 (77)
T ss_pred             HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            3456778888888887 9999999999999998877655566555444433

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.83  E-value=64  Score=35.08  Aligned_cols=174  Identities=16%  Similarity=0.141  Sum_probs=102.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhc------CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC----------
Q 004829          407 GDYEAALEHYVLASMSMAAN------GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN----------  470 (728)
Q Consensus       407 g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------  470 (728)
                      ..|++|...|.-+...+..+      ...|.....+..++.++..+|+.+-|....+++|-.+...+-+.          
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            34566777666665554322      24577788899999999999999999999999998877654211          


Q ss_pred             ---CH---HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          471 ---HP---AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA  544 (728)
Q Consensus       471 ---~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  544 (728)
                         .|   ....+++..-..+...|-+..|.++++-.+.+...     .+|.  -+++.+-....+..+|+=-+.+++..
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~-----eDPl--~~l~~ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS-----EDPL--GILYLIDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc-----CCch--hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence               12   22334444455566789999999999988887321     1221  12222233334445555444444433


Q ss_pred             HHHHhcCCCCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Q 004829          545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGN---YSDSYNTLKSAISKFR  590 (728)
Q Consensus       545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~  590 (728)
                      ... ... ...+.... -..+|..|.....   -..|...+.+|+.++.
T Consensus       405 e~~-n~l-~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  405 ENM-NKL-SQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             Hhh-ccH-hhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            221 111 11111111 1245566665554   5678888888887643

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=84.62  E-value=9.3  Score=34.61  Aligned_cols=150  Identities=15%  Similarity=0.124  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-
Q 004829          415 HYVLASMSMAANGHELDVASIDCSIGDAYLS-----LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI-  488 (728)
Q Consensus       415 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-  488 (728)
                      .|+.|..++..+-+....+...+.+|..++.     .+++..|++.+..+-+.          ....+..++|.+++.- 
T Consensus        50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~  119 (248)
T KOG4014|consen   50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGE  119 (248)
T ss_pred             HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCc
Confidence            4555555555555556666677777765542     45788899888887663          2344556667666542 


Q ss_pred             ----CC--hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH------------------------cCCHHHHH
Q 004829          489 ----GK--LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS------------------------MNELEQAV  538 (728)
Q Consensus       489 ----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~------------------------~g~~~~A~  538 (728)
                          ++  ..+|++++.++.++-           ...+.+.|...|..                        ..+.+.|.
T Consensus       120 ~~r~~dpd~~Ka~~y~traCdl~-----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~  188 (248)
T KOG4014|consen  120 KDRKADPDSEKAERYMTRACDLE-----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKAL  188 (248)
T ss_pred             CCccCCCCcHHHHHHHHHhccCC-----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHH
Confidence                23  678889998887652           12233333333332                        23445555


Q ss_pred             HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCC
Q 004829          539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYM----TGNYSDSYNTLKSAISKFRTSGE  594 (728)
Q Consensus       539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~  594 (728)
                      ++--+|-++.         ...+..++.+.|..    -.+.++|..+-.+|.++.+.+..
T Consensus       189 qfa~kACel~---------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k  239 (248)
T KOG4014|consen  189 QFAIKACELD---------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRK  239 (248)
T ss_pred             HHHHHHHhcC---------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence            5554444331         12344456665543    23677888888888888766543

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=84.47  E-value=6.9  Score=29.43  Aligned_cols=48  Identities=27%  Similarity=0.281  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829          222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLH  270 (728)
Q Consensus       222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~  270 (728)
                      +..+...|..+-..| ++++|+.+|.+++..+.......+++.....+.
T Consensus         5 A~~~~~~Av~~D~~g-~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~   52 (69)
T PF04212_consen    5 AIELIKKAVEADEAG-NYEEALELYKEAIEYLMQALKSESNPERRQALR   52 (69)
T ss_dssp             HHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            455677888888887 999999999999998876655444444444333

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=84.44  E-value=21  Score=30.72  Aligned_cols=87  Identities=13%  Similarity=0.126  Sum_probs=58.6

Q ss_pred             CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 004829          489 GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVM  568 (728)
Q Consensus       489 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~  568 (728)
                      +.-..-...+++++..+.....-.+++....+|...+....      .+...|......     +.-...+..|...|..
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~-----~IG~~~A~fY~~wA~~  108 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK-----GIGTKLALFYEEWAEF  108 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH-----TTSTTBHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc-----CccHHHHHHHHHHHHH
Confidence            45566677889999888663222345566666666555332      677777655443     3334457788889999


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 004829          569 YYMTGNYSDSYNTLKSAI  586 (728)
Q Consensus       569 ~~~~g~~~~A~~~~~~al  586 (728)
                      +...|++.+|...|+.++
T Consensus       109 le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  109 LEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHTT-HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhC
Confidence            999999999999998875

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=84.36  E-value=51  Score=34.69  Aligned_cols=65  Identities=12%  Similarity=-0.077  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829          269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI  338 (728)
Q Consensus       269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  338 (728)
                      ....+..++..++|..|...+.......   .+...  .........|..++..-++.+|..+++..+..
T Consensus       134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl---~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  134 EWRRAKELFNRYDYGAAARILEELLRRL---PGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhC---Cchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3345667788899999999999877631   11111  11222333445556677889999998887665

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=84.33  E-value=96  Score=36.75  Aligned_cols=109  Identities=15%  Similarity=0.058  Sum_probs=77.0

Q ss_pred             HHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHH
Q 004829          271 VLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRV  350 (728)
Q Consensus       271 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  350 (728)
                      ....++.....|++|+..|++...-++   |...   -..+.+.+|.+...+-.-..--+.|.+|+..+..+.+  .+..
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  551 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFP---GRKE---GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGA  551 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCC---Cccc---chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCC
Confidence            456777888889999999998776552   2222   1235778888776654333333567777777666532  3445


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829          351 GETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP  387 (728)
Q Consensus       351 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  387 (728)
                      .--|..-|.+|...|+|++-+++|.-|++.++..+.-
T Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        552 PLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            5567778889999999999999999999998877654

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=83.96  E-value=2.6  Score=41.19  Aligned_cols=58  Identities=12%  Similarity=0.088  Sum_probs=51.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          607 MGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       607 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      .|.-....|+.++|..+|+.|+.+        .|...+++..+|......++.-+|-.+|-+|+.+
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti  179 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI  179 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence            344455679999999999999999        7888889999999999999999999999999885

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=83.83  E-value=51  Score=33.22  Aligned_cols=98  Identities=19%  Similarity=0.156  Sum_probs=71.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004829          402 ICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRL  481 (728)
Q Consensus       402 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  481 (728)
                      +..+.++.++|++++++..........+..+......+|.++...|+..++.+.+...-.......+- .+.....++.+
T Consensus        84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY~l  162 (380)
T KOG2908|consen   84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFYSL  162 (380)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHHHH
Confidence            44566799999999999988877777766778888899999999999999999988887766555322 34344555555


Q ss_pred             HHH-HHHcCChHHHHHHHHH
Q 004829          482 ADL-YHKIGKLRDSKSYCEN  500 (728)
Q Consensus       482 a~~-~~~~g~~~~A~~~~~~  500 (728)
                      +.- |...|++.......-+
T Consensus       163 ssqYyk~~~d~a~yYr~~L~  182 (380)
T KOG2908|consen  163 SSQYYKKIGDFASYYRHALL  182 (380)
T ss_pred             HHHHHHHHHhHHHHHHHHHH
Confidence            554 4456777654443333

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=83.42  E-value=3.2  Score=40.59  Aligned_cols=72  Identities=22%  Similarity=0.127  Sum_probs=59.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004829          399 MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVF  478 (728)
Q Consensus       399 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  478 (728)
                      .+.-....|+.++|...|+.|+.+      .|....++..+|.+.....+.-+|-.+|-+||.+        .|....++
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nseAL  187 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSEAL  187 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchHHH
Confidence            344455689999999999999877      5777889999999999999999999999999998        77777777


Q ss_pred             HHHHHH
Q 004829          479 VRLADL  484 (728)
Q Consensus       479 ~~la~~  484 (728)
                      .+.+..
T Consensus       188 vnR~RT  193 (472)
T KOG3824|consen  188 VNRART  193 (472)
T ss_pred             hhhhcc
Confidence            666543

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=83.38  E-value=89  Score=35.60  Aligned_cols=152  Identities=9%  Similarity=-0.036  Sum_probs=86.9

Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829          347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN  426 (728)
Q Consensus       347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  426 (728)
                      ++.....+..|-.+++..|++++-...-.++.++++-..   +++.-  |..--......++...+...|++++.-....
T Consensus       109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~---~lWl~--Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v  183 (881)
T KOG0128|consen  109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP---HLWLE--WLKDELSMTQSEERKEVEELFEKALGDYNSV  183 (881)
T ss_pred             cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh---HHHHH--HHHHHHhhccCcchhHHHHHHHHHhcccccc
Confidence            445556667777788889998887776666666664332   11111  1111111223367778888888886432111


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      ......+......+..+...++++.....|.+++...-.... ........+..+...|...-..++-+.++...+..
T Consensus       184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~  260 (881)
T KOG0128|consen  184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ  260 (881)
T ss_pred             hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence            111222333333344456667888889999999876443322 12334556666666666666666667777666654

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.31  E-value=3.7  Score=27.65  Aligned_cols=25  Identities=40%  Similarity=0.578  Sum_probs=23.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          647 SNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       647 ~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                      +.||.+|..+|+.+.|...+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6799999999999999999999986

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=83.22  E-value=13  Score=32.71  Aligned_cols=82  Identities=15%  Similarity=-0.004  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 004829          396 RRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA  475 (728)
Q Consensus       396 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  475 (728)
                      +..+...-...++++++...+...- .+     .|....+...-|.++...|+|.+|+..++...+-        .+...
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALr-vL-----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~--------~~~~p   78 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALR-VL-----RPNLKELDMFDGWLLIARGNYDEAARILRELLSS--------AGAPP   78 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH-Hh-----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------CCCch
Confidence            3444445555888888888776433 22     4666677778889999999999999999988664        33445


Q ss_pred             HHHHHHHHHHHHcCCh
Q 004829          476 SVFVRLADLYHKIGKL  491 (728)
Q Consensus       476 ~~~~~la~~~~~~g~~  491 (728)
                      ...-.++.|+..+|+.
T Consensus        79 ~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        79 YGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHHHHHHHHhcCCh
Confidence            5555677777777764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.10  E-value=21  Score=37.45  Aligned_cols=73  Identities=12%  Similarity=0.081  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE  634 (728)
Q Consensus       562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  634 (728)
                      +..|.+++..+|+|..|++.++..----..+...-+.....+++.+|-+|+.+++|.+|+..|...+-...+.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~  197 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT  197 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4467788899999999988876432111112222234455688999999999999999999999998775543

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.68  E-value=12  Score=28.76  Aligned_cols=48  Identities=21%  Similarity=0.191  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829          222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLH  270 (728)
Q Consensus       222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~  270 (728)
                      +..+...|...-..| ++++|+.+|.+|+..+.......+++.....+.
T Consensus         6 A~~l~~~Av~~D~~g-~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~   53 (75)
T cd02678           6 AIELVKKAIEEDNAG-NYEEALRLYQHALEYFMHALKYEKNPKSKESIR   53 (75)
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            456777788888887 999999999999999877655555554444333

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=81.39  E-value=17  Score=31.23  Aligned_cols=87  Identities=14%  Similarity=0.128  Sum_probs=54.0

Q ss_pred             CChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004829          280 GQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAE  359 (728)
Q Consensus       280 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  359 (728)
                      +.-..-..++++++........-.+....+.+|...+.    .-.  ++..+|..+...      .-....+..|...|.
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~~~--~~~~if~~l~~~------~IG~~~A~fY~~wA~  107 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD----LSS--DPREIFKFLYSK------GIGTKLALFYEEWAE  107 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----TBS--HHHHHHHHHHHH------TTSTTBHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----Hcc--CHHHHHHHHHHc------CccHHHHHHHHHHHH
Confidence            45556667888888776432222222222333333333    222  788888766544      113456778888899


Q ss_pred             HHHHhCCHHHHHHHHHHHH
Q 004829          360 AHVQSLQFDEAEKICQMAL  378 (728)
Q Consensus       360 ~~~~~g~~~~A~~~~~~al  378 (728)
                      .+...|++.+|...|+.++
T Consensus       108 ~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  108 FLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhC
Confidence            9999999999999998875

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=81.15  E-value=19  Score=28.77  Aligned_cols=48  Identities=17%  Similarity=0.108  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 004829          329 ILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN  384 (728)
Q Consensus       329 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  384 (728)
                      +..+++.+..        +|....+.+.+|..+...|++++|++.+-.++...+..
T Consensus         8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3445566665        78899999999999999999999999888887665444

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=80.74  E-value=27  Score=34.38  Aligned_cols=75  Identities=15%  Similarity=0.138  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829          561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH  640 (728)
Q Consensus       561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  640 (728)
                      .+...+..|...|.+.+|+.+.++++.+        ++.....+..+-.++...|+--.|...|++.-+.++..+|-+-.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd  352 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD  352 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence            3445678899999999999999999987        56566778888889999999999999999988887777765544


Q ss_pred             hHH
Q 004829          641 DTL  643 (728)
Q Consensus       641 ~~~  643 (728)
                      +..
T Consensus       353 dsi  355 (361)
T COG3947         353 DSI  355 (361)
T ss_pred             hhH
Confidence            433

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=80.61  E-value=5.5  Score=40.14  Aligned_cols=63  Identities=14%  Similarity=0.112  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829          643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       643 ~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                      +.-+...|+-.+.++++++|...|..|..+..+++|..|-++..+++..|..++..++...+.
T Consensus        41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V  103 (400)
T KOG4563|consen   41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV  103 (400)
T ss_pred             HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345677888999999999999999999999999999999999999999999999999988876

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.19  E-value=81  Score=33.00  Aligned_cols=121  Identities=17%  Similarity=-0.003  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC--chhHhHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ--DHALAKFAGCMQLGDTYAMLGQI---ENSILCYTAGLEIQR  340 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~  340 (728)
                      +..++..|.+++....|.+|+.++-.|-+.+......  +.....+-.-..+.+||+.+.+.   ++|..-+..+-+-+.
T Consensus       163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~  242 (568)
T KOG2561|consen  163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE  242 (568)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence            4456667788888888999888887776654211100  00011122345677888887653   455555554444444


Q ss_pred             HHc-----------CCCChHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 004829          341 QVL-----------GETDHRVG---ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS  386 (728)
Q Consensus       341 ~~~-----------~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  386 (728)
                      ..+           |+..|+.+   ..+..-|.+.+.+|+-++|.++++.+...+.+..-
T Consensus       243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki  302 (568)
T KOG2561|consen  243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKI  302 (568)
T ss_pred             hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeec
Confidence            433           33444433   34556788889999999999999988877665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	728
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		2e-08
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		4e-06
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		8e-04
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		3e-08
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		8e-07
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		7e-04
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		6e-08
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		4e-07
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		4e-06
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		2e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		3e-05

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 3/165 (1%)
Query: 426 NGHE-LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL 484
           +GH+  DVA++   +   Y    ++ EA    + AL   +   G++HPAVA+    LA L
Sbjct: 35  SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94
Query: 485 YHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544
           Y K GK ++++  C+ AL+I  K   G    ++A  L ++A + Q+  + E+      +A
Sbjct: 95  YGKRGKYKEAEPLCKRALEIREKV-LGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRA 153
Query: 545 LKIYGKTPG-QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588
           L+IY    G     +A  +  +   Y   G Y D+    K  +++
Sbjct: 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 3/188 (1%)
Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ-QS 556
           C+ AL+   K + G    ++A+ L  +A +Y+  N+ ++A  LLN AL I  KT G+   
Sbjct: 24  CKQALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82
Query: 557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT 616
            +A     + V+Y   G Y ++    K A+        K        L+ + L C  +  
Sbjct: 83  AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGK 142
Query: 617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676
             E    +  A  I     GP   +     +NLA  Y   G+  DA  + + ++    EK
Sbjct: 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202
Query: 677 -LGTANPD 683
             G+ N D
Sbjct: 203 EFGSVNGD 210

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 45/98 (45%)
Query: 604 LNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI 663
           LN + L    +    EAA L  +A  I EK  G  H       +NLA  Y   G+  +A 
Sbjct: 46  LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105
Query: 664 EILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRV 701
            + +  + +RE+ LG  +PDV  +   LA L +  G+ 
Sbjct: 106 PLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKA 143

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 3/165 (1%)
Query: 426 NGHE-LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL 484
           +GH+  DVA++   +   Y    ++ EA    + AL   +   G++HPAVA+    LA L
Sbjct: 35  SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94
Query: 485 YHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544
           Y K GK ++++  C+ AL+I  K   G    ++A  L ++A + Q+  + E+      +A
Sbjct: 95  YGKRGKYKEAEPLCKRALEIREKV-LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153
Query: 545 LKIYGKTPG-QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588
           L+IY    G     +A  +  +   Y   G Y D+    K  +++
Sbjct: 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 3/188 (1%)
Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ-QS 556
           C+ AL+   K + G    ++A+ L  +A +Y+  N+ ++A  LLN AL I  KT G+   
Sbjct: 24  CKQALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82
Query: 557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT 616
            +A     + V+Y   G Y ++    K A+        K        LN + L C  +  
Sbjct: 83  AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK 142
Query: 617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676
             E    +  A  I     GP   +     +NLA  Y   G+  DA  + + ++    EK
Sbjct: 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202
Query: 677 -LGTANPD 683
             G+ N D
Sbjct: 203 EFGSVNGD 210

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 45/98 (45%)
Query: 604 LNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI 663
           LN + L    +    EAA L  +A  I EK  G  H       +NLA  Y   G+  +A 
Sbjct: 46  LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105
Query: 664 EILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRV 701
            + +  + +RE+ LG  +PDV  +   LA L +  G+ 
Sbjct: 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 21/275 (7%)
Query: 265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA-LAKFAGCMQLGDTYAMLG 323
           ++  LH L   + S G+Y  A+P+ ++++E      G DH  +A     + L   Y    
Sbjct: 26  RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL--VYRDQN 83
Query: 324 QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE 383
           + +++       L I+ + LG+    V  T   +A  + +  ++ EAE +C+ AL+I  +
Sbjct: 84  KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143
Query: 384 NTSPASIEEAADRRLMGLICDSKGDYEAALEHY--VLASMSMAANGHELDVASIDCSIGD 441
                  + A     + L+C ++G YE    +Y   L          + +VA    ++  
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203
Query: 442 AYLSLARFDEAIFSYHKALT-----AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKS 496
            YL   +F +A   Y + LT      F S   EN P    +++   +     GK +D  S
Sbjct: 204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP----IWMHAEEREECKGKQKDGTS 259
Query: 497 YCENALKIYGKPNHG--IPSEEIASGLIDIAAIYQ 529
           + E     YG       + S  + + L ++ A+Y+
Sbjct: 260 FGE-----YGGWYKACKVDSPTVTTTLKNLGALYR 289

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 6/198 (3%)
Query: 396 RRLMGLICD--SKGDYEAA--LEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDE 451
           R L  L+    S+G YE A  L    L  +   +     DVA++   +   Y    ++ +
Sbjct: 28  RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD 87
Query: 452 AIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511
           A    + AL   +   G++HPAVA+    LA LY K GK ++++  C+ AL+I  K   G
Sbjct: 88  AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-LG 146
Query: 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPG-QQSTIAGIEAQMGVMYY 570
               ++A  L ++A + Q+  + E+      +AL+IY    G     +A  +  +   Y 
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206
Query: 571 MTGNYSDSYNTLKSAISK 588
             G +  +    K  +++
Sbjct: 207 KQGKFKQAETLYKEILTR 224

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 7/220 (3%)
Query: 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM 531
           PA       L   Y   G+   +   C+ AL+   K + G    ++A+ L  +A +Y+  
Sbjct: 24  PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-GHDHPDVATMLNILALVYRDQ 82
Query: 532 NELEQAVKLLNKALKIYGKTPGQ-QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590
           N+ + A  LLN AL I  KT G+    +A     + V+Y   G Y ++    K A+    
Sbjct: 83  NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142
Query: 591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA 650
               K        LN + L C  +    E    ++ A  I + + GP   +     +NLA
Sbjct: 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA 202
Query: 651 GTYDAMGRIDDAIEIL-EYVVGMREEKLGTANPDVEDEKR 689
             Y   G+   A  +  E +    E + G+    V+DE +
Sbjct: 203 SCYLKQGKFKQAETLYKEILTRAHEREFGS----VDDENK 238

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 3/184 (1%)
Query: 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ-QSTIAGIEAQMGVMYYMTGNYSDSY 579
           L ++   Y S    E AV L  +AL+   KT G     +A +   + ++Y     Y D+ 
Sbjct: 30  LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89
Query: 580 NTLKSAIS-KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638
           N L  A++ + +T G+   A+    LN + +   +R    EA  L + A  I EK  G  
Sbjct: 90  NLLNDALAIREKTLGKDHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148
Query: 639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA 698
           H D     +NLA      G+ ++     +  + + + KLG  +P+V   K  LA    + 
Sbjct: 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ 208
Query: 699 GRVR 702
           G+ +
Sbjct: 209 GKFK 212

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
           ++G+AY     +DEAI  Y KAL        E +P  A  +  L + Y+K G   ++  Y
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKAL--------ELYPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548
            + AL++Y  PN+       A    ++   Y    + ++A++   KAL++Y
Sbjct: 66  YQKALELY--PNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELY 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	728
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-39
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-36
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-20
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-12
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-39
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-34
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-32
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-28
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-18
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-37
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-34
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-33
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-29
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-36
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-32
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-21
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-34
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-33
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-33
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-30
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-25
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-27
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-22
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-22
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-17
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-12
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-27
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-24
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-23
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-15
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-27
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-26
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-26
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-24
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-22
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-05
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-21
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-19
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	7e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-18
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-13
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-18
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-17
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-12
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-17
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-14
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-12
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-13
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	5e-09
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-10
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-09
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	5e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-09
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	1e-05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	3e-04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	3e-04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	5e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	8e-05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	4e-04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	8e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	3e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-04

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  150 bits (381), Expect = 1e-39
 Identities = 66/423 (15%), Positives = 126/423 (29%), Gaps = 42/423 (9%)

Query: 265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQ 324
             + L +     C  G     +   E +V++   ED +  +        QLG+ Y  L  
Sbjct: 8   SCLELALEGERLCKSGDCRAGVSFFEAAVQV-GTEDLKTLSAI----YSQLGNAYFYLHD 62

Query: 325 IENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN 384
              ++  +   L + R +  +      +    +         FDEA   CQ  LDI RE 
Sbjct: 63  YAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120

Query: 385 TSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYL 444
                   A     +G +  +KG          +                          
Sbjct: 121 NDKVGE--ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA---------------- 162

Query: 445 SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504
                  A+  Y + L+        +  A    F  L + ++ +G  RD+    E  L I
Sbjct: 163 ----LQAAVDFYEENLSLVT--ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216

Query: 505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ 564
             +               ++   Y  + E E A +   K L +  +    ++  A     
Sbjct: 217 AKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYS 272

Query: 565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLF 624
           +G  Y +  +Y  + +     ++  +   ++     G A   +G A       ++A    
Sbjct: 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE--GRACWSLGNAYTALGNHDQAMHFA 330

Query: 625 EEARTILEKEYGPYHHDT----LG-VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT 679
           E+   I  +        T    L  +   L  +Y     I      ++  +     KLG 
Sbjct: 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGR 390

Query: 680 ANP 682
            + 
Sbjct: 391 RHS 393

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score =  140 bits (355), Expect = 3e-36
 Identities = 59/397 (14%), Positives = 130/397 (32%), Gaps = 45/397 (11%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI-P 296
           + +  +   + A++        +           L   +  L  Y +A+      + +  
Sbjct: 24  DCRAGVSFFEAAVQ-----VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 78

Query: 297 VLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV------------LG 344
            + D    A A       LG+T  +LG  + +I+C    L+I R++            LG
Sbjct: 79  TIGDQLGEAKA----SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 134

Query: 345 ETDHRVGE------TCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRL 398
              H  G+                       A    +  L +       A+         
Sbjct: 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQ--GRAFGN 192

Query: 399 MGLICDSKGDYEAALEHYVLASMSMA-ANGHELDVASIDCSIGDAYLSLARFDEAIFSYH 457
           +G      G++  A+  +    + +A   G +        ++G+AY+ L  F+ A   Y 
Sbjct: 193 LGNTHYLLGNFRDAVIAH-EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251

Query: 458 KALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK-PNHGIPSEE 516
           K L   +  K  +    A     L + Y  +     +  Y    L I  +  +       
Sbjct: 252 KTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR----IG 305

Query: 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIY---GKTPGQQST---IAGIEAQMGVMYY 570
                  +   Y ++   +QA+    K L+I    G   G+ +    ++ ++  +G+ Y 
Sbjct: 306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365

Query: 571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM 607
              +       + S+++  R    ++ ++  + L ++
Sbjct: 366 TNNSIMSENTEIDSSLNGVRPKLGRRHSMENMELMKL 402

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 92.0 bits (229), Expect = 5e-20
 Identities = 40/275 (14%), Positives = 83/275 (30%), Gaps = 19/275 (6%)

Query: 216 LGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAI 275
            G     P             +  Q A++  +  +         + +  Q      L   
Sbjct: 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA-LGDRAA--QGRAFGNLGNT 196

Query: 276 HCSLGQYNEAIPVLERSVEIPV-LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTA 334
           H  LG + +A+   E+ + I     D      A       LG+ Y  LG+ E +   Y  
Sbjct: 197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA----YSNLGNAYIFLGEFETASEYYKK 252

Query: 335 GLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAA 394
            L + RQ+         ++C  +   +     +++A       L I +E           
Sbjct: 253 TLLLARQLKDRAV--EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE--GR 308

Query: 395 DRRLMGLICDSKGDYEAALEHYVLA-SMSMAANGHE------LDVASIDCSIGDAYLSLA 447
               +G    + G+++ A+        +S             L+++ +   +G +Y +  
Sbjct: 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368

Query: 448 RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLA 482
                      +L   +   G  H       ++L 
Sbjct: 369 SIMSENTEIDSSLNGVRPKLGRRHSMENMELMKLT 403

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 67.3 bits (165), Expect = 6e-12
 Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 7/162 (4%)

Query: 515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN 574
           E     L           +    V     A+++  +      T++ I +Q+G  Y+   +
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---DLKTLSAIYSQLGNAYFYLHD 62

Query: 575 YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE 634
           Y+ +       ++  RT G++       A   +G         +EA    +    I  + 
Sbjct: 63  YAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120

Query: 635 YGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676
                        NL   Y A G+        +      E +
Sbjct: 121 ND--KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  146 bits (372), Expect = 2e-39
 Identities = 60/315 (19%), Positives = 112/315 (35%), Gaps = 27/315 (8%)

Query: 375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA-SMSMAANGHE-LDV 432
               +++ +               + +   S+G YE A+     A       +GH+  DV
Sbjct: 9   SGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDV 68

Query: 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLR 492
           A++   +   Y    ++ +A    + AL   +   G++HPAVA+    LA LY K GK +
Sbjct: 69  ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128

Query: 493 DSKSYCENALKIYGK---PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG 549
           +++  C+ AL+I  K    +H  P   +A  L ++A + Q+  + E+      +AL+IY 
Sbjct: 129 EAEPLCKRALEIREKVLGKDH--PD--VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184

Query: 550 KTPGQQ-STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS-GEKKSALFG------ 601
              G     +A  +  +   Y   G +         A + ++          FG      
Sbjct: 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQ-------AETLYKEILTRAHEREFGSVDDEN 237

Query: 602 -IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRID 660
                        +    +     E       K              NL   Y   G+ +
Sbjct: 238 KPIWMHAEEREECKGKQKDGTSFGEYG--GWYKACKVDSPTVTTTLKNLGALYRRQGKFE 295

Query: 661 DAIEILEYVVGMREE 675
            A  + E  +  R++
Sbjct: 296 AAETLEEAAMRSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  133 bits (336), Expect = 1e-34
 Identities = 63/286 (22%), Positives = 120/286 (41%), Gaps = 13/286 (4%)

Query: 269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQ-LGDTYAMLGQIEN 327
           LH L   + S G+Y  A+P+ ++++E      G DH     A  +  L   Y    + ++
Sbjct: 30  LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH--PDVATMLNILALVYRDQNKYKD 87

Query: 328 SILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP 387
           +       L I+ + LG+    V  T   +A  + +  ++ EAE +C+ AL+I  +    
Sbjct: 88  AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147

Query: 388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLA-SMSMAANGHE-LDVASIDCSIGDAYLS 445
              + A     + L+C ++G YE    +Y  A  +     G +  +VA    ++   YL 
Sbjct: 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK 207

Query: 446 LARFDEAIFSYHKALT-AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENAL-- 502
             +F +A   Y + LT A +   G        +++   +     GK +D  S+ E     
Sbjct: 208 QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267

Query: 503 KIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548
           K     +   P+  + + L ++ A+Y+   + E A  L   A++  
Sbjct: 268 KACK-VDS--PT--VTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  127 bits (322), Expect = 1e-32
 Identities = 55/298 (18%), Positives = 108/298 (36%), Gaps = 54/298 (18%)

Query: 409 YEAALEHYVLASMSMAANGHE-LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467
           +          ++     G+E         ++   Y S  R++ A+    +AL   +   
Sbjct: 4   HHHHSSGR--ENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS 61

Query: 468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK---PNHGIPSEEIASGLIDI 524
           G +HP VA++   LA +Y    K +D+ +   +AL I  K    +H  P+  +A+ L ++
Sbjct: 62  GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH--PA--VAATLNNL 117

Query: 525 AAIYQSMNELEQAVKLLNKALKIYGKTPGQQ-STIAGIEAQMGVMYYMTGNYSDSYNTLK 583
           A +Y    + ++A  L  +AL+I  K  G+    +A                    N L 
Sbjct: 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA-----------------KQLNNL- 159

Query: 584 SAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTL 643
                             +     G     +Y   E    ++ A  I + + GP   +  
Sbjct: 160 -----------------ALLCQNQG-----KY--EEVEYYYQRALEIYQTKLGPDDPNVA 195

Query: 644 GVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK-LGTANPDVEDEKRRLAELLKEAGR 700
              +NLA  Y   G+   A  + + ++    E+  G+ + + +       E  +  G+
Sbjct: 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  115 bits (291), Expect = 1e-28
 Identities = 47/266 (17%), Positives = 92/266 (34%), Gaps = 5/266 (1%)

Query: 315 LGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC 374
           L   YA  G+ E ++      LE   +  G     V      +A  +    ++ +A  + 
Sbjct: 33  LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92

Query: 375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA-SMSMAANGHE-LDV 432
             AL I  +         AA    + ++   +G Y+ A      A  +     G +  DV
Sbjct: 93  NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152

Query: 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLR 492
           A    ++     +  +++E  + Y +AL  +++  G + P VA     LA  Y K GK +
Sbjct: 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFK 212

Query: 493 DSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP 552
            +++  +  L    +   G   +E     +      +   + +              K  
Sbjct: 213 QAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY--KAC 270

Query: 553 GQQS-TIAGIEAQMGVMYYMTGNYSD 577
              S T+      +G +Y   G +  
Sbjct: 271 KVDSPTVTTTLKNLGALYRRQGKFEA 296

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 86.4 bits (215), Expect = 1e-18
 Identities = 52/232 (22%), Positives = 85/232 (36%), Gaps = 11/232 (4%)

Query: 240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI--PV 297
           + A  L   A+   E    GK        L+ LA ++   G+Y EA P+ +R++EI   V
Sbjct: 86  KDAANLLNDALAIREK-TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144

Query: 298 LEDGQDHALAKFAGCMQ-LGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY 356
           L  G+DH     A  +  L       G+ E     Y   LEI +  LG  D  V +T   
Sbjct: 145 L--GKDHP--DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200

Query: 357 VAEAHVQSLQFDEAEKICQMALDIHRENT-SPASIEEAADRRLMGLICDSKGDYEAALEH 415
           +A  +++  +F +AE + +  L    E        E            + KG  +     
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260

Query: 416 YVLASMSMAANGHE-LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA 466
                    A   +   V +   ++G  Y    +F+ A      A+ + K  
Sbjct: 261 GEYG-GWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQG 311

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 43/213 (20%), Positives = 69/213 (32%), Gaps = 54/213 (25%)

Query: 496 SYCENAL----KIYGK---PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548
            +  +       +Y +                L ++   Y S    E AV L  +AL+  
Sbjct: 2   HHHHHHSSGRENLYFQGGGYEI----PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDL 57

Query: 549 GKTPGQQ-STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM 607
            KT G     +A                    N L                   +     
Sbjct: 58  EKTSGHDHPDVA-----------------TMLNIL------------------ALVYRDQ 82

Query: 608 GLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILE 667
                 +Y   +AA+L  +A  I EK  G  H       +NLA  Y   G+  +A  + +
Sbjct: 83  N-----KY--KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 135

Query: 668 YVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700
             + +RE+ LG  +PDV  +   LA L +  G+
Sbjct: 136 RALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 168

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  144 bits (365), Expect = 1e-37
 Identities = 52/368 (14%), Positives = 117/368 (31%), Gaps = 43/368 (11%)

Query: 322 LGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH 381
           LG        +    +      G +   +        E    +          Q A+   
Sbjct: 21  LGSGGGGTNSHDGNSQQGSGSDGGSS--MCLELALEGERLCNAGDCRAGVAFFQAAIQAG 78

Query: 382 RENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA-SMSMAANGHELDVASIDCSIG 440
            E+        +A    +G      GDY  A++++    +++ + N   L  A    ++G
Sbjct: 79  TEDLR----TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR-LGEAKSSGNLG 133

Query: 441 DAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK---------- 490
           +    + RFDEA     + LT  +     +  +       L ++YH  GK          
Sbjct: 134 NTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKF 191

Query: 491 -------LRDSKSYCENALKI----YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVK 539
                  L  +  + +  LK+      +               ++   Y  + + + A++
Sbjct: 192 GDDVKEALTRAVEFYQENLKLMRDLGDRGA-------QGRACGNLGNTYYLLGDFQAAIE 244

Query: 540 LLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL 599
              + L+I  +  G ++      + +G  +   G + D+    K  ++     GE++   
Sbjct: 245 HHQERLRIA-REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE- 302

Query: 600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI 659
              +   +G      +  N A +       I ++              +L   + A+G  
Sbjct: 303 -AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG--DRIGEARACWSLGNAHSAIGGH 359

Query: 660 DDAIEILE 667
           + A++  E
Sbjct: 360 ERALKYAE 367

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  135 bits (342), Expect = 2e-34
 Identities = 46/393 (11%), Positives = 115/393 (29%), Gaps = 43/393 (10%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
           +               +  +         + L +     C+ G     +   + +++   
Sbjct: 23  SGGGGTNSHDGNS---QQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQA-G 78

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357
            ED +  +        QLG+ Y  LG    ++  +   L + + +         ++   +
Sbjct: 79  TEDLRTLSAI----YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG--EAKSSGNL 132

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417
                   +FDEA   C+  L + R+      + E      +G +  +KG +        
Sbjct: 133 GNTLKVMGRFDEAAICCERHLTLARQ--LGDRLSEGRALYNLGNVYHAKGKHLGQRNPGK 190

Query: 418 LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASV 477
                  A                          A+  Y + L   +     +  A    
Sbjct: 191 FGDDVKEA-----------------------LTRAVEFYQENLKLMRDLG--DRGAQGRA 225

Query: 478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537
              L + Y+ +G  + +  + +  L+I  +               ++   +  + + E A
Sbjct: 226 CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD---RAAERRANSNLGNSHIFLGQFEDA 282

Query: 538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS 597
            +   + L +  +  G++   A     +G  Y +   ++ +       ++  +  G++  
Sbjct: 283 AEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341

Query: 598 ALFGIALNQMGLACVQRYTINEAADLFEEARTI 630
                A   +G A         A    E+   +
Sbjct: 342 E--ARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  132 bits (335), Expect = 1e-33
 Identities = 48/328 (14%), Positives = 112/328 (34%), Gaps = 33/328 (10%)

Query: 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA 425
                             +   +S+    +  L G    + GD  A +  +  A++    
Sbjct: 23  SGGGGTNSHDGNSQQGSGSDGGSSM--CLELALEGERLCNAGDCRAGVAFF-QAAIQAGT 79

Query: 426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY 485
                 +++I   +G+AY  L  +++A+  +   LT  KS    +    A     L +  
Sbjct: 80  EDLR-TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSSGNLGNTL 136

Query: 486 HKIGKLRDSKSYCENALKIYGK-PNHGIPSEEIASGLIDIAAIYQSMNE----------- 533
             +G+  ++   CE  L +  +  +           L ++  +Y +  +           
Sbjct: 137 KVMGRFDEAAICCERHLTLARQLGDR----LSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192

Query: 534 ------LEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS 587
                 L +AV+   + LK+     G +         +G  YY+ G++  +    +  + 
Sbjct: 193 DDVKEALTRAVEFYQENLKLMRDL-GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251

Query: 588 KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYS 647
             R  G++ +     A + +G + +      +AA+ ++    +  +              
Sbjct: 252 IAREFGDRAAE--RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG--EREVEAQSCY 307

Query: 648 NLAGTYDAMGRIDDAIEILEYVVGMREE 675
           +L  TY  +   + AIE     + + +E
Sbjct: 308 SLGNTYTLLHEFNTAIEYHNRHLAIAQE 335

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score =  121 bits (305), Expect = 1e-29
 Identities = 40/297 (13%), Positives = 97/297 (32%), Gaps = 35/297 (11%)

Query: 399 MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK 458
             +     G        +   S   + +     +       G+   +       +  +  
Sbjct: 14  ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73

Query: 459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK-PNHGIPSEEI 517
           A+     A  E+   +++++ +L + Y  +G    +  Y ++ L +     +        
Sbjct: 74  AI----QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR----LGE 125

Query: 518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS- 576
           A    ++    + M   ++A     + L +  +  G + +       +G +Y+  G +  
Sbjct: 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL-GDRLSEGRALYNLGNVYHAKGKHLG 184

Query: 577 ---------DSYNTLKSAISKF-------RTSGEKKSALFGIALNQMGLACVQ--RYTIN 618
                    D    L  A+  +       R  G++ +   G A   +G        +   
Sbjct: 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ--GRACGNLGNTYYLLGDFQ-- 240

Query: 619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE 675
            A +  +E   I  +E+G          SNL  ++  +G+ +DA E  +  + +  E
Sbjct: 241 AAIEHHQERLRI-AREFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  137 bits (347), Expect = 2e-36
 Identities = 64/310 (20%), Positives = 113/310 (36%), Gaps = 57/310 (18%)

Query: 399 MGLICDSKGDYEAALEHYVLA-SMSMAANGHE-LDVASIDCSIGDAYLSLARFDEAIFSY 456
                       +A+     A       +GH+  DVA++   +   Y    ++ EA    
Sbjct: 7   HHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLL 66

Query: 457 HKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK---PNHGIP 513
           + AL   +   G++HPAVA+    LA LY K GK ++++  C+ AL+I  K     H  P
Sbjct: 67  NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH--P 124

Query: 514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ--STIAGIEAQMGVMYYM 571
              +A  L ++A + Q+  + E+      +AL+IY    G    +               
Sbjct: 125 D--VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK------------ 170

Query: 572 TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA-RTI 630
                 + N L                       + G     +Y   +A  L++E     
Sbjct: 171 ------TKNNL------------------ASCYLKQG-----KYQ--DAETLYKEILTRA 199

Query: 631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR 690
            EKE+G  + D   ++ +     ++  +  D+    EY  G   +     +P V    R 
Sbjct: 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY--GSWYKACKVDSPTVNTTLRS 257

Query: 691 LAELLKEAGR 700
           L  L +  G+
Sbjct: 258 LGALYRRQGK 267

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  125 bits (316), Expect = 4e-32
 Identities = 58/285 (20%), Positives = 111/285 (38%), Gaps = 13/285 (4%)

Query: 269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQ-LGDTYAMLGQIEN 327
            H        L     A+P+ ++++E      G DH     A  +  L   Y    + + 
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDH--PDVATMLNILALVYRDQNKYKE 61

Query: 328 SILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP 387
           +       L I+ + LG+    V  T   +A  + +  ++ EAE +C+ AL+I  +    
Sbjct: 62  AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121

Query: 388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLA-SMSMAANGHE-LDVASIDCSIGDAYLS 445
              + A     + L+C ++G  E    +Y  A  +     G +  +VA    ++   YL 
Sbjct: 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181

Query: 446 LARFDEAIFSYHKALTAFKSAK-GENHPAVASVFVRLADLYHKIGKLRDSKSYCENAL-- 502
             ++ +A   Y + LT     + G  +     +++   +      K RDS  Y E     
Sbjct: 182 QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY 241

Query: 503 KIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
           K     +   P+  + + L  + A+Y+   +LE A  L + A + 
Sbjct: 242 KACK-VDS--PT--VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 93.4 bits (233), Expect = 3e-21
 Identities = 50/238 (21%), Positives = 83/238 (34%), Gaps = 60/238 (25%)

Query: 468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK---PNHGIPSEEIASGLIDI 524
           G +H                +     +   C+ AL+   K    +H  P   +A+ L  +
Sbjct: 2   GSSHH--------HHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDH--PD--VATMLNIL 49

Query: 525 AAIYQSMNELEQAVKLLNKALKIYGKTPGQQ--STIAGIEAQMGVMYYMTGNYSDSYNTL 582
           A +Y+  N+ ++A  LLN AL I  KT G+   +  A                  + N L
Sbjct: 50  ALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA------------------TLNNL 91

Query: 583 KSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDT 642
                              +   + G     +Y   EA  L + A  I EK  G +H D 
Sbjct: 92  ------------------AVLYGKRG-----KY--KEAEPLCKRALEIREKVLGKFHPDV 126

Query: 643 LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700
               +NLA      G+ ++        + +   +LG  +P+V   K  LA    + G+
Sbjct: 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 47.5 bits (114), Expect = 7e-06
 Identities = 12/116 (10%), Positives = 34/116 (29%), Gaps = 6/116 (5%)

Query: 269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLED-GQDHALAKFAGCMQ-LGDTYAMLGQIE 326
            + LA+ +   G+Y +A  + +  +     ++ G  +             +      +  
Sbjct: 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG--DNKPIWMHAEEREESKDKRR 229

Query: 327 NSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR 382
           +S            +        V  T R +   + +  + + A  +   A    +
Sbjct: 230 DSAPYGE--YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNRK 283

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  133 bits (336), Expect = 2e-34
 Identities = 57/346 (16%), Positives = 114/346 (32%), Gaps = 35/346 (10%)

Query: 269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENS 328
           L +     C  G     +   E +V++   ED +  +        QLG+ Y  L     +
Sbjct: 8   LALEGERLCKSGDCRAGVSFFEAAVQV-GTEDLKTLSAI----YSQLGNAYFYLHDYAKA 62

Query: 329 ILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA 388
           +  +   L + R +  +      +    +         FDEA   CQ  LDI RE     
Sbjct: 63  LEYHHHDLTLARTIGDQLG--EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 120

Query: 389 SI------------------EEAADRRLMGLICDSKGDYEAALEHYVLASMSMA-ANGHE 429
                                    +       D +   +AA++ Y   ++S+  A G  
Sbjct: 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY-EENLSLVTALGDR 179

Query: 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG 489
                   ++G+ +  L  F +A+ ++ + L   K     +  A    +  L + Y  +G
Sbjct: 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAYIFLG 237

Query: 490 KLRDSKSYCENALKIYGK-PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548
           +   +  Y +  L +  +  +        A     +   Y  + + E+A+    K L I 
Sbjct: 238 EFETASEYYKKTLLLARQLKDR----AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293

Query: 549 GKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594
            +    +         +G  Y   GN+  + +  +  +   R  G+
Sbjct: 294 QEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  129 bits (326), Expect = 5e-33
 Identities = 51/332 (15%), Positives = 99/332 (29%), Gaps = 38/332 (11%)

Query: 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA-SMSMA 424
                    + A+ +  E+        +A    +G       DY  ALE++    +++  
Sbjct: 20  DCRAGVSFFEAAVQVGTEDLK----TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 75

Query: 425 ANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL 484
                L  A    ++G+    L  FDEAI    + L   +     +    A     L ++
Sbjct: 76  IGDQ-LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNV 132

Query: 485 YHKIGK--------------------LRDSKSYCENALKIYGK-PNHGIPSEEIASGLID 523
           YH  GK                    L+ +    E  L +     +             +
Sbjct: 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR----AAQGRAFGN 188

Query: 524 IAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLK 583
           +   +  +     AV    + L I  K  G ++      + +G  Y   G +  +    K
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247

Query: 584 SAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTL 643
             +   R   ++       +   +G          +A D   +   I ++          
Sbjct: 248 KTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEG 303

Query: 644 GVYSNLAGTYDAMGRIDDAIEILEYVVGMREE 675
               +L   Y A+G  D A+   E  + +  E
Sbjct: 304 RACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  129 bits (326), Expect = 6e-33
 Identities = 52/332 (15%), Positives = 105/332 (31%), Gaps = 39/332 (11%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI-P 296
           + +  +   + A+   ++                L   +  L  Y +A+      + +  
Sbjct: 20  DCRAGVSFFEAAV---QVGTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 74

Query: 297 VLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV------------LG 344
            + D    A A       LG+T  +LG  + +I+C    L+I R++            LG
Sbjct: 75  TIGDQLGEAKA----SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 130

Query: 345 ETDHRVGETCRYVAEAHVQSL------QFDEAEKICQMALDIHRENTSPASIEEAADRRL 398
              H  G++                      A  + +  L +       A+         
Sbjct: 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQ--GRAFGN 188

Query: 399 MGLICDSKGDYEAALEHYVLASMSMA-ANGHELDVASIDCSIGDAYLSLARFDEAIFSYH 457
           +G      G++  A+  +    + +A   G +        ++G+AY+ L  F+ A   Y 
Sbjct: 189 LGNTHYLLGNFRDAVIAH-EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247

Query: 458 KALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK-PNHGIPSEE 516
           K L   +  K  +    A     L + Y  +     +  Y    L I  +  +       
Sbjct: 248 KTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR----IG 301

Query: 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548
                  +   Y ++   +QA+    K L+I 
Sbjct: 302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  122 bits (309), Expect = 1e-30
 Identities = 47/297 (15%), Positives = 106/297 (35%), Gaps = 34/297 (11%)

Query: 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDE 451
              +  L G      GD  A +  +  A++ +     +  +++I   +G+AY  L  + +
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFF-EAAVQVGTEDLK-TLSAIYSQLGNAYFYLHDYAK 61

Query: 452 AIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK-PNH 510
           A+  +H  LT  ++    +    A     L +    +G   ++   C+  L I  +  + 
Sbjct: 62  ALEYHHHDLTLARTIG--DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119

Query: 511 GIPSEEIASGLIDIAAIYQSM--------------------NELEQAVKLLNKALKIYGK 550
                  A  L ++  +Y +                     N L+ AV L  + L +   
Sbjct: 120 ----VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175

Query: 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA 610
             G ++        +G  +Y+ GN+ D+    +  +   +  G+K +     A + +G A
Sbjct: 176 L-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RRAYSNLGNA 232

Query: 611 CVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILE 667
            +       A++ +++   +  +              +L  TY  +   + AI+   
Sbjct: 233 YIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHL 287

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score =  106 bits (266), Expect = 4e-25
 Identities = 33/256 (12%), Positives = 77/256 (30%), Gaps = 30/256 (11%)

Query: 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498
            G+           +  +  A+        E+   +++++ +L + Y  +     +  Y 
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66

Query: 499 ENALKIYGK-PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST 557
            + L +     +        A    ++    + +   ++A+    + L I  +   +   
Sbjct: 67  HHDLTLARTIGDQ----LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG- 121

Query: 558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL------------------ 599
            A     +G +Y+  G          +           ++A+                  
Sbjct: 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA 181

Query: 600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI 659
            G A   +G          +A    E+   I  KE+G         YSNL   Y  +G  
Sbjct: 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI-AKEFG-DKAAERRAYSNLGNAYIFLGEF 239

Query: 660 DDAIEILEYVVGMREE 675
           + A E  +  + +  +
Sbjct: 240 ETASEYYKKTLLLARQ 255

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 22/160 (13%), Positives = 47/160 (29%), Gaps = 7/160 (4%)

Query: 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS 576
               L           +    V     A+++  +      T++ I +Q+G  Y+   +Y+
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED---LKTLSAIYSQLGNAYFYLHDYA 60

Query: 577 DSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG 636
            +       ++  RT G++       A   +G         +EA    +    I  +   
Sbjct: 61  KALEYHHHDLTLARTIGDQLGE--AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 118

Query: 637 PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676
                      NL   Y A G+        +      + +
Sbjct: 119 --KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
             + A E  K+ +         +    +    + L   +  L  Y +AI    + + I  
Sbjct: 238 EFETASEYYKKTLLLARQ-LKDRAV--EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-- 292

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV 342
            ++ +D      A C  LG+ Y  LG  + ++      LEI R+V
Sbjct: 293 AQELKDRIGEGRA-CWSLGNAYTALGNHDQAMHFAEKHLEISREV 336

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score =  110 bits (276), Expect = 1e-27
 Identities = 25/207 (12%), Positives = 64/207 (30%), Gaps = 7/207 (3%)

Query: 369 EAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH 428
           EA                PA+   +  R ++G +      ++ A   +         +G 
Sbjct: 4   EAHDYALAERQAQALLAHPAT--ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD 61

Query: 429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI 488
                     +G        +D A   + +       +  E+  A ++    +A +    
Sbjct: 62  HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHF 120

Query: 489 GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548
           G L  ++   E +L    + +       IA     +  + Q    L +A +   +A  I+
Sbjct: 121 GDLAGARQEYEKSLVYAQQADD---QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177

Query: 549 GKTPGQQSTIAGIEAQMGVMYYMTGNY 575
            +       +  +  ++  + +   ++
Sbjct: 178 AEL-EDSEAVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 94.3 bits (235), Expect = 3e-22
 Identities = 26/197 (13%), Positives = 63/197 (31%), Gaps = 7/197 (3%)

Query: 412 ALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471
           A ++ +    + A   H    +     +G  Y  + RFDEA  S+       + +   +H
Sbjct: 5   AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DH 62

Query: 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM 531
            A      ++  +    G    ++       ++             ++   ++A +    
Sbjct: 63  TAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS--LPEDPLAASANAYEVATVALHF 120

Query: 532 NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591
            +L  A +   K+L    +    Q  IA     +G +     N  ++      A   F  
Sbjct: 121 GDLAGARQEYEKSLVYAQQA-DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179

Query: 592 SGEKKSALFGIALNQMG 608
             + ++      + ++ 
Sbjct: 180 LEDSEAV--NELMTRLN 194

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 93.9 bits (234), Expect = 4e-22
 Identities = 21/208 (10%), Positives = 60/208 (28%), Gaps = 9/208 (4%)

Query: 451 EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510
           EA         A       +    +     L  +Y  + +  ++++  +   +   K   
Sbjct: 4   EAHDYALAERQAQA--LLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD 61

Query: 511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYY 570
                     L  +  + +     + A +   +  ++    P      +    ++  +  
Sbjct: 62  ---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118

Query: 571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630
             G+ + +    + ++   + + ++ +     A   +G    Q   + EA   +  AR I
Sbjct: 119 HFGDLAGARQEYEKSLVYAQQADDQVAI--ACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

Query: 631 LEKEYGPYHHDTLGVYSNLAGTYDAMGR 658
              E          + + L G       
Sbjct: 177 FA-ELE-DSEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 28/210 (13%), Positives = 64/210 (30%), Gaps = 11/210 (5%)

Query: 241 KALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV-LE 299
           +A + A    ++  + A+            +L  ++  + +++EA    +   +      
Sbjct: 4   EAHDYALAERQAQALLAH---PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60

Query: 300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAE 359
           D      A      Q+G    M G  + +  C+    E+    L E           VA 
Sbjct: 61  DHTAEHRA----LHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVAT 115

Query: 360 AHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA 419
             +       A +  + +L   ++     +   A   R +G +   + +   A +H++ A
Sbjct: 116 VALHFGDLAGARQEYEKSLVYAQQADDQVA--IACAFRGLGDLAQQEKNLLEAQQHWLRA 173

Query: 420 SMSMAANGHELDVASIDCSIGDAYLSLARF 449
               A       V  +   +          
Sbjct: 174 RDIFAELEDSEAVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 4/132 (3%)

Query: 536 QAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK 595
           +A        +         +T +G    +G +Y     + ++  + ++   + + SG+ 
Sbjct: 4   EAHDYALAERQAQALL-AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62

Query: 596 KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA 655
            +     AL+Q+G+        + A   F E R +L                 +A     
Sbjct: 63  TAE--HRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALH 119

Query: 656 MGRIDDAIEILE 667
            G +  A +  E
Sbjct: 120 FGDLAGARQEYE 131

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  112 bits (281), Expect = 7e-27
 Identities = 38/317 (11%), Positives = 110/317 (34%), Gaps = 14/317 (4%)

Query: 362 VQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASM 421
           ++ ++ +E  ++  + L+I ++      + E       G+    + +Y +A++ +  A  
Sbjct: 72  LEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES 131

Query: 422 SMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRL 481
            +      ++ A     + ++Y  + +   ++    +A   +K  +  N   +    +  
Sbjct: 132 KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL-F 190

Query: 482 ADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLL 541
           A  +  + +  D+ S+ + A  +          + +   L +I     S ++ E A+   
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQ---PQLMGRTLYNIGLCKNSQSQYEDAIPYF 247

Query: 542 NKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG 601
            +A+ ++ ++     ++      +  ++Y  G    ++      ++  + +G+       
Sbjct: 248 KRAIAVFEES-NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306

Query: 602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD 661
             L  + L+      I    D  E             + D      ++A  Y        
Sbjct: 307 EFLKSLYLSGPDEEAIQGFFDFLESKML---------YADLEDFAIDVAKYYHERKNFQK 357

Query: 662 AIEILEYVVGMREEKLG 678
           A      V  +R+   G
Sbjct: 358 ASAYFLKVEQVRQLIQG 374

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  105 bits (264), Expect = 1e-24
 Identities = 40/309 (12%), Positives = 96/309 (31%), Gaps = 18/309 (5%)

Query: 241 KALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI-PVLE 299
           +        +   +        L +               +Y  AI   +++      ++
Sbjct: 78  EEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK 137

Query: 300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAE 359
           D  + A   F    ++ ++Y  + Q   S+       EI ++     + R+ +     A 
Sbjct: 138 DRIEKAEFFF----KMSESYYYMKQTYFSMDYARQAYEIYKEHEAY-NIRLLQCHSLFAT 192

Query: 360 AHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA 419
             +   Q+++A    Q A  +      P  +        +GL  +S+  YE A+ ++  A
Sbjct: 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLM--GRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 420 SMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV 479
                 +     +      I   +  L + D+A   + K +   + A    + +      
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310

Query: 480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVK 539
            L         ++    + E+ +             ++    ID+A  Y      ++A  
Sbjct: 311 SLYLSGPDEEAIQGFFDFLESKMLY----------ADLEDFAIDVAKYYHERKNFQKASA 360

Query: 540 LLNKALKIY 548
              K  ++ 
Sbjct: 361 YFLKVEQVR 369

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score =  101 bits (254), Expect = 2e-23
 Identities = 46/316 (14%), Positives = 98/316 (31%), Gaps = 16/316 (5%)

Query: 361 HVQSLQFDEAEKICQMALDIHR---ENTSPASIEEAADRRL------MGLICDSKGDYEA 411
           +++     +AE + +          E+          + R       +  +   + + + 
Sbjct: 22  YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQP 81

Query: 412 ALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471
            L   +L      A    L     +   G   L    +  AI  + KA +       ++ 
Sbjct: 82  RLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLI--FVKDR 139

Query: 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM 531
              A  F ++++ Y+ + +   S  Y   A +IY +  H   +  +       A  +  +
Sbjct: 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE--HEAYNIRLLQCHSLFATNFLDL 197

Query: 532 NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591
            + E A+    KA  +      Q   +      +G+       Y D+    K AI+ F  
Sbjct: 198 KQYEDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256

Query: 592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAG 651
           S    S     A   +     +   I++A +   +     +K     +        +L  
Sbjct: 257 SNILPS--LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL 314

Query: 652 TYDAMGRIDDAIEILE 667
           +      I    + LE
Sbjct: 315 SGPDEEAIQGFFDFLE 330

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 27/234 (11%), Positives = 79/234 (33%), Gaps = 14/234 (5%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
               +++ A++A + ++   +   ++  + C  + A     L QY +AI   +++  +  
Sbjct: 158 QTYFSMDYARQAYEIYK--EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM-A 214

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357
             + Q   + +      +G       Q E++I  +   + +  +        + +    +
Sbjct: 215 EAEKQPQLMGRT--LYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLI 270

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417
            + H +  + D+A +     +   ++          ++   +  +  S  D EA    + 
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDV---IYLSEFEFLKSLYLSGPDEEAIQGFF- 326

Query: 418 LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471
                + +     D+      +   Y     F +A   + K     +  +G   
Sbjct: 327 ---DFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVS 377

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  112 bits (281), Expect = 8e-27
 Identities = 48/316 (15%), Positives = 92/316 (29%), Gaps = 19/316 (6%)

Query: 361 HVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV-LA 419
            ++     +AE +        ++      +       LM        DY    + Y    
Sbjct: 22  MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYS--LMCFRHQLMLDYLEPGKTYGNRP 79

Query: 420 SMSMAANGHELDVASIDC--------SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471
           +++      E     +            G        + EAI  Y +A          + 
Sbjct: 80  TVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELP--FVSDD 137

Query: 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM 531
              A    ++A+ Y+ + +   S  +   AL IY    H + S      L  IA  Y   
Sbjct: 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN--HPLYSIRTIQSLFVIAGNYDDF 195

Query: 532 NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT 591
              ++A+  L  AL++       +  IA     +   Y  +G+   +    + A    R 
Sbjct: 196 KHYDKALPHLEAALELAMDIQNDRF-IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR- 253

Query: 592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAG 651
             EK   L    L  +     +     +A    EE    +      ++ +       +  
Sbjct: 254 --EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311

Query: 652 TYDAMGRIDDAIEILE 667
                 +I D +   E
Sbjct: 312 ETVDERKIHDLLSYFE 327

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  110 bits (277), Expect = 2e-26
 Identities = 44/358 (12%), Positives = 119/358 (33%), Gaps = 20/358 (5%)

Query: 323 GQIENSILCYTAGLEIQRQVLGETD-----HRVGETCRYVAEAHVQSLQFDEAEKICQMA 377
             + ++ +      +  +Q+  + D       +    + + +       +     + ++ 
Sbjct: 26  FSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85

Query: 378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDC 437
             I         + +       G+    + +Y  A+ +Y  A   +     +++ A    
Sbjct: 86  ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHF 145

Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
            + +AY  + +   +++   +AL  +++    +   + S+FV +A  Y        +  +
Sbjct: 146 KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV-IAGNYDDFKHYDKALPH 204

Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST 557
            E AL++     +      IA  L++IA  Y    + + AV+   KA K+  +       
Sbjct: 205 LEAALELAMDIQN---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-- 259

Query: 558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI 617
           +  +   +       G    ++  ++  +        K      + L  +    V    I
Sbjct: 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319

Query: 618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE 675
           ++    FE+            H        + A  +++    + A      V+  +E+
Sbjct: 320 HDLLSYFEKKN---------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score =  108 bits (272), Expect = 1e-25
 Identities = 48/309 (15%), Positives = 100/309 (32%), Gaps = 19/309 (6%)

Query: 241 KALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI-PVLE 299
                    +++ E        L +   L           +Y EAI     + +  P + 
Sbjct: 76  GNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS 135

Query: 300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAE 359
           D  + A   F    ++ + Y  + Q   S+      L+I +        R  ++   +A 
Sbjct: 136 DDIEKAEFHF----KVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-SIRTIQSLFVIAG 190

Query: 360 AHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA 419
            +     +D+A    + AL++  +  +   I  A     +    D  GD + A+EH+   
Sbjct: 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFI--AISLLNIANSYDRSGDDQMAVEHF-QK 247

Query: 420 SMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV 479
           +  ++       +  +   +        +  +A     + L    +   + +  +     
Sbjct: 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF-- 305

Query: 480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVK 539
            L  +Y +    R       + L  + K N       I +     AA+++S    EQA  
Sbjct: 306 -LQAVYKETVDERK----IHDLLSYFEKKNL---HAYIEACARSAAAVFESSCHFEQAAA 357

Query: 540 LLNKALKIY 548
              K LK  
Sbjct: 358 FYRKVLKAQ 366

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 77.5 bits (191), Expect = 2e-15
 Identities = 30/234 (12%), Positives = 83/234 (35%), Gaps = 15/234 (6%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
               ++    +A+  ++   +   S+  +  L V+A  +     Y++A+P LE ++E+  
Sbjct: 156 QTHVSMYHILQALDIYQ--NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL-- 211

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357
             D Q+      +  + + ++Y   G  + ++  +    ++ R+ + +    + +    +
Sbjct: 212 AMDIQNDRFIAIS-LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD---LLPKVLFGL 267

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417
           +    ++ Q  +A +  +  LD     +     E     + +      +      L ++ 
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF- 326

Query: 418 LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471
                         + +   S    + S   F++A   Y K L A +       
Sbjct: 327 ------EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  109 bits (274), Expect = 9e-26
 Identities = 71/465 (15%), Positives = 150/465 (32%), Gaps = 94/465 (20%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI-P 296
           + + A     +  +         P  +    L +L++IH    + + +      +++  P
Sbjct: 14  DFEAAERHCMQLWRQE-------P--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 297 VLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY 356
                   A A       LG+ Y   GQ++ +I  Y   L +             +    
Sbjct: 65  ------LLAEAYS----NLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYIN 106

Query: 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY 416
           +A A V +   + A +    AL  + +            R  +G +  + G  E A   Y
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDL--------YCVRSDLGNLLKALGRLEEAKACY 158

Query: 417 VLASMSMAANGHEL--DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV 474
           + A         E   + A    ++G  + +      AI  + KA+           P  
Sbjct: 159 LKAI--------ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--------TLDPNF 202

Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534
              ++ L ++  +      + +    AL +   PNH       A    ++A +Y     +
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH-------AVVHGNLACVYYEQGLI 253

Query: 535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594
           + A+    +A+++       Q         +       G+ ++       A   + T+  
Sbjct: 254 DLAIDTYRRAIEL-------QPHFPDAYCNLANALKEKGSVAE-------AEDCYNTALR 299

Query: 595 KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD 654
                   +LN +     ++  I EA  L+ +A  +          +    +SNLA    
Sbjct: 300 LCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQ 350

Query: 655 AMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG 699
             G++ +A+   +  + +        +P   D    +   LKE  
Sbjct: 351 QQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  105 bits (265), Expect = 1e-24
 Identities = 75/437 (17%), Positives = 147/437 (33%), Gaps = 95/437 (21%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILC 331
           LA      G +  A     +     +     D+        + L   +    +++ S   
Sbjct: 5   LAHREYQAGDFEAAERHCMQ-----LWRQEPDNTGV----LLLLSSIHFQCRRLDRSAHF 55

Query: 332 YTAGLEIQRQV------LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENT 385
            T  ++    +      LG      G              Q  EA +  + AL +  +  
Sbjct: 56  STLAIKQNPLLAEAYSNLGNVYKERG--------------QLQEAIEHYRHALRLKPDF- 100

Query: 386 SPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL--DVASIDCSIGDAY 443
                        +     + GD E A++ YV A         +   D+  +   +G+  
Sbjct: 101 -------IDGYINLAAALVAAGDMEGAVQAYVSA--------LQYNPDLYCVRSDLGNLL 145

Query: 444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALK 503
            +L R +EA   Y KA+        E  P  A  +  L  +++  G++  +  + E A+ 
Sbjct: 146 KALGRLEEAKACYLKAI--------ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 504 IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEA 563
           +   PN            I++  + +     ++AV    +AL +           A +  
Sbjct: 198 L--DPNF-------LDAYINLGNVLKEARIFDRAVAAYLRALSL-------SPNHAVVHG 241

Query: 564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADL 623
            +  +YY  G           AI  +R + E +   F  A   +  A  ++ ++ EA D 
Sbjct: 242 NLACVYYEQGLIDL-------AIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDC 293

Query: 624 FEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD 683
           +  A  +      P H D+    +NLA      G I++A+ +    + +         P+
Sbjct: 294 YNTALRL-----CPTHADS---LNNLANIKREQGNIEEAVRLYRKALEV--------FPE 337

Query: 684 VEDEKRRLAELLKEAGR 700
                  LA +L++ G+
Sbjct: 338 FAAAHSNLASVLQQQGK 354

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 93.0 bits (232), Expect = 2e-20
 Identities = 56/356 (15%), Positives = 117/356 (32%), Gaps = 66/356 (18%)

Query: 311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEA 370
           G M+L       G  E +          +       D+        ++  H Q  + D +
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQE------PDN--TGVLLLLSSIHFQCRRLDRS 52

Query: 371 EKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL 430
                +A+  +           A     +G +   +G  + A+EHY  A          L
Sbjct: 53  AHFSTLAIKQNPLL--------AEAYSNLGNVYKERGQLQEAIEHYRHA--------LRL 96

Query: 431 --DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI 488
             D      ++  A ++    + A+ +Y  AL        + +P +  V   L +L   +
Sbjct: 97  KPDFIDGYINLAAALVAAGDMEGAVQAYVSAL--------QYNPDLYCVRSDLGNLLKAL 148

Query: 489 GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548
           G+L ++K+    A++   +PN        A    ++  ++ +  E+  A+    KA+ + 
Sbjct: 149 GRLEEAKACYLKAIET--QPNF-------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL- 198

Query: 549 GKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMG 608
                           +G +      +         A++ +  +         +    + 
Sbjct: 199 ------DPNFLDAYINLGNVLKEARIFDR-------AVAAYLRALSLSPN-HAVVHGNLA 244

Query: 609 LACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
               ++  I+ A D +  A  I   E  P+  D    Y NLA      G + +A +
Sbjct: 245 CVYYEQGLIDLAIDTYRRA--I---ELQPHFPDA---YCNLANALKEKGSVAEAED 292

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.9 bits (133), Expect = 5e-08
 Identities = 32/183 (17%), Positives = 59/183 (32%), Gaps = 35/183 (19%)

Query: 520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEA--QMGVMYYMTGNYSD 577
           G +++A       + E A +   +  +                    +  +++       
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNT---------GVLLLLSSIHFQCRRLDR 51

Query: 578 SYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP 637
           S +    AI +     E        A + +G    +R  + EA + +  A  +      P
Sbjct: 52  SAHFSTLAIKQNPLLAE--------AYSNLGNVYKERGQLQEAIEHYRHALRL-----KP 98

Query: 638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE 697
              D    Y NLA    A G ++ A++     +          NPD+   +  L  LLK 
Sbjct: 99  DFID---GYINLAAALVAAGDMEGAVQAYVSAL--------QYNPDLYCVRSDLGNLLKA 147

Query: 698 AGR 700
            GR
Sbjct: 148 LGR 150

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 99.5 bits (248), Expect = 7e-22
 Identities = 52/469 (11%), Positives = 126/469 (26%), Gaps = 80/469 (17%)

Query: 224 FLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYN 283
             L   +  ++         +  K A K        K         ++   ++ +L  ++
Sbjct: 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS---MCYLRGQVYTNLSNFD 217

Query: 284 EAIPVLERSVEI------------------PVLEDGQDHALAKFAGCMQLGDTYAMLGQI 325
            A    + ++ +                     E      L       +       L  +
Sbjct: 218 RAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277

Query: 326 ENSILCYTAGLEIQRQVLG--ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE 383
           + +   +   L      L       +  +     A+      +F +   I    L+I   
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337

Query: 384 NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL-----DVASIDCS 438
           N             L        G+                   ++L     + A    +
Sbjct: 338 N--------LDVYPLHLASLHESGEKNKLYLIS-----------NDLVDRHPEKAVTWLA 378

Query: 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498
           +G  YL + +  EA   + K+            P     ++  A  +   G+   + S  
Sbjct: 379 VGIYYLCVNKISEARRYFSKSS--------TMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430

Query: 499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTI 558
             A ++       +P        + +   +  +  +  A + L  +  ++   P     +
Sbjct: 431 TTAARL--FQGTHLP-------YLFLGMQHMQLGNILLANEYLQSSYALFQYDP-----L 476

Query: 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTIN 618
              E  +GV+ +   +   + N  ++A+   + +   +   +      +G A  +    +
Sbjct: 477 LLNE--LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP-WAATWANLGHAYRKLKMYD 533

Query: 619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILE 667
            A D   +              +   V++ +A  Y        AI  L 
Sbjct: 534 AAIDALNQG-----LLLSTNDAN---VHTAIALVYLHKKIPGLAITHLH 574

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 87.6 bits (217), Expect = 4e-18
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 60/313 (19%)

Query: 240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI-PVL 298
              L +  + ++      +            +  A     G+ N+   +    V+  P  
Sbjct: 322 IDVLAITTKILEIDPYNLD---------VYPLHLASLHESGEKNKLYLISNDLVDRHP-- 370

Query: 299 EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVA 358
               + A+   A    +G  Y  + +I  +   ++    +  Q  G           ++ 
Sbjct: 371 ----EKAVTWLA----VGIYYLCVNKISEARRYFSKSSTMDPQ-FGPA---------WIG 412

Query: 359 EAHVQSLQ--FDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY 416
            AH  +++   D+A      A  + +    P           +G+     G+   A E+ 
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL--------FLGMQHMQLGNILLANEYL 464

Query: 417 VLASMSMAANGHEL--DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV 474
             +        + L      +   +G    + +    AI  +  AL   K  +       
Sbjct: 465 QSS--------YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE-KPW 515

Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534
           A+ +  L   Y K+     +       L +    N        A+    IA +Y      
Sbjct: 516 AATWANLGHAYRKLKMYDAAIDALNQGLLL--STND-------ANVHTAIALVYLHKKIP 566

Query: 535 EQAVKLLNKALKI 547
             A+  L+++L I
Sbjct: 567 GLAITHLHESLAI 579

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 74.5 bits (183), Expect = 6e-14
 Identities = 67/596 (11%), Positives = 159/596 (26%), Gaps = 104/596 (17%)

Query: 142 VKKGKKKYSQLNISEASTKSSSQGKSSNERPPADKRYEKGRRK-QNNIFSARKQRKFASL 200
           VK+ +      +         +   ++   PP+           Q +  +       A+ 
Sbjct: 3   VKRTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANN 62

Query: 201 IAKFQNGAEDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGK 260
            +   +  ++  A    + +   +L     + +      + A  + ++ +          
Sbjct: 63  TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQ-QYKCAAFVGEKVLDI-------T 114

Query: 261 PSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV------LEDGQDHALAKFAGCMQ 314
            +         LA ++C  G Y  A  +L +            L       L  + G + 
Sbjct: 115 GNPNDA---FWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALN 171

Query: 315 L-GDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKI 373
           L G+T       +N+         I+ +            C    + +     FD A++ 
Sbjct: 172 LLGETNPFRKDEKNANKLLMQDGGIKLE---------ASMCYLRGQVYTNLSNFDRAKEC 222

Query: 374 CQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALE-HYVLASMSMAANGHELDV 432
            + AL +  +        EA D+ +   +  +  +++  L+ +Y   S   AA    L  
Sbjct: 223 YKEALMVDAKCY------EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL-- 274

Query: 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLR 492
                 +     S          Y  ++              + + +  AD      +  
Sbjct: 275 ----YMLKLNKTSHEDELRRAEDYLSSI--------NGLEKSSDLLLCKADTLFVRSRFI 322

Query: 493 DSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP 552
           D  +     L+I   P +               A      E  +   + N  +  + +  
Sbjct: 323 DVLAITTKILEID--PYN-------LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA 373

Query: 553 GQQSTIAGIEA--QMGVMYYMTGNYSDSYNTLKSAISK--------------FRTSGEKK 596
                         +G+ Y      S++      + +               F   GE  
Sbjct: 374 ---------VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD 424

Query: 597 SAL------------FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG 644
            A+              +    +G+  +Q   I  A +  + +  +       Y      
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQYDPL--- 476

Query: 645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700
           + + L         +  AI   +  + +  +K  +           L    ++   
Sbjct: 477 LLNELGVVAFNKSDMQTAINHFQNALLL-VKKTQSNEKPWAATWANLGHAYRKLKM 531

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 11/105 (10%)

Query: 237 ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIP 296
            + Q A+   + A+   +   + +           L   +  L  Y+ AI  L + + + 
Sbjct: 489 SDMQTAINHFQNALLLVKKTQSNEKPWAA--TWANLGHAYRKLKMYDAAIDALNQGLLL- 545

Query: 297 VLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ 341
                 + A    A    +   Y        +I      L I   
Sbjct: 546 ----STNDANVHTA----IALVYLHKKIPGLAITHLHESLAISPN 582

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 95.0 bits (236), Expect = 3e-21
 Identities = 41/310 (13%), Positives = 88/310 (28%), Gaps = 13/310 (4%)

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417
           A+  +     DEAE++ ++AL+        +         ++G +   KG+   +L    
Sbjct: 21  AQVAINDGNPDEAERLAKLALEELPPGWFYS---RIVATSVLGEVLHCKGELTRSLALMQ 77

Query: 418 LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASV 477
                   +              +   +      A  +  KA         E  P    +
Sbjct: 78  QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137

Query: 478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537
               A L     +L ++++   + +++          ++    L  +     +  +L+ A
Sbjct: 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQP----QQQLQCLAMLIQCSLARGDLDNA 193

Query: 538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS 597
              LN+   + G        I+       + + MTG+ +       + +          +
Sbjct: 194 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA----AAANWLRHTAKPEFANN 249

Query: 598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG 657
                    +  A +       A  + EE              D       L   Y   G
Sbjct: 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAG 307

Query: 658 RIDDAIEILE 667
           R  DA  +L 
Sbjct: 308 RKSDAQRVLL 317

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 90.0 bits (223), Expect = 2e-19
 Identities = 39/311 (12%), Positives = 104/311 (33%), Gaps = 18/311 (5%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
           NP +A  LAK A++             +++   VL  +    G+   ++ +++++ ++  
Sbjct: 29  NPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM-- 82

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357
                    A ++   Q  +     G ++ +        ++  +   E         R  
Sbjct: 83  ARQHDVWHYALWSLI-QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417
           A+      + DEAE   +  +++         ++  A   ++     ++GD + A     
Sbjct: 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA---MLIQCSLARGDLDNARSQLN 198

Query: 418 LASMSMAANGHELD-VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVAS 476
                +    +  D +++ +      +        A       L      +  N+  +  
Sbjct: 199 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA----ANWLRHTAKPEFANNHFLQG 254

Query: 477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQ 536
            +  +A     +G+   ++   E   +        + S+   + L+ +  +Y        
Sbjct: 255 QWRNIARAQILLGEFEPAEIVLEELNENARS--LRLMSDLNRN-LLLLNQLYWQAGRKSD 311

Query: 537 AVKLLNKALKI 547
           A ++L  ALK+
Sbjct: 312 AQRVLLDALKL 322

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 88.1 bits (218), Expect = 7e-19
 Identities = 39/322 (12%), Positives = 97/322 (30%), Gaps = 14/322 (4%)

Query: 265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQ 324
                 + A +  + G  +EA  + + ++E           +A       LG+     G+
Sbjct: 13  HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA----TSVLGEVLHCKGE 68

Query: 325 IENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN 384
           +  S+       ++ RQ   +  H    +    +E          A +  + A  +  E 
Sbjct: 69  LTRSLALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126

Query: 385 TSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYL 444
                       R+   +  +    + A        + + ++            +    L
Sbjct: 127 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG-IEVLSSYQPQQQLQCLAMLIQCSL 185

Query: 445 SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504
           +    D A    ++      +    +   +++        +   G    + ++  +  K 
Sbjct: 186 ARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244

Query: 505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ 564
               NH +  +       +IA     + E E A  +L +  +   ++    S +      
Sbjct: 245 EFANNHFLQGQ-----WRNIARAQILLGEFEPAEIVLEELNE-NARSLRLMSDLNRNLLL 298

Query: 565 MGVMYYMTGNYSDSYNTLKSAI 586
           +  +Y+  G  SD+   L  A+
Sbjct: 299 LNQLYWQAGRKSDAQRVLLDAL 320

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 92.9 bits (231), Expect = 7e-20
 Identities = 54/394 (13%), Positives = 112/394 (28%), Gaps = 60/394 (15%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSIL 330
           ++A + S G   + I    +++EI P      DH+ A     ++       LG   +++ 
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKP------DHSKA----LLRRASANESLGNFTDAMF 114

Query: 331 CYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI 390
             +             +  +       A   +     +   K       +   NTS AS 
Sbjct: 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLN----ENLSKDEGRGSQVLPSNTSLASF 170

Query: 391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD 450
               D  L     ++  +Y+ A      A   + +            +     ++     
Sbjct: 171 FGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSA-----------TDEGYLVANDLLT 219

Query: 451 EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510
           ++   YH  L+A            A         +     L D++   + ++ +   P  
Sbjct: 220 KSTDMYHSLLSANTVD-DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPT- 275

Query: 511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYY 570
                   +  I +A         ++  K   KA+ +                  G MY+
Sbjct: 276 -------PNSYIFLALTLADKENSQEFFKFFQKAVDL-------NPEYPPTYYHRGQMYF 321

Query: 571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630
           +  +Y +       A   F+ +             Q+     ++    E+   F E +  
Sbjct: 322 ILQDYKN-------AKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLK 373

Query: 631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
                 P   +   V +  A      G  D AI+
Sbjct: 374 -----FPTLPE---VPTFFAEILTDRGDFDTAIK 399

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 86.3 bits (214), Expect = 8e-18
 Identities = 50/438 (11%), Positives = 110/438 (25%), Gaps = 92/438 (21%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQ---------------LG 316
            A+ + SLG + +A+  L         +      + +     Q                 
Sbjct: 99  RASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158

Query: 317 DTYAMLGQIENSILCYTAGLEIQ---------------RQVLGETDHRVGETCRYVAEAH 361
                   + +    + + LE+                   L        E      +  
Sbjct: 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLL 218

Query: 362 VQSL-QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA- 419
            +S   +        +   +            A      G+    K +   A      + 
Sbjct: 219 TKSTDMYHSLLSANTVDDPLRENA--------ALALCYTGIFHFLKNNLLDAQVLLQESI 270

Query: 420 SMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV 479
           ++    N +          +           E    + KA+        + +P     + 
Sbjct: 271 NLHPTPNSY--------IFLALTLADKENSQEFFKFFQKAV--------DLNPEYPPTYY 314

Query: 480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVK 539
               +Y  +   +++K   + A  +   P +           I +A +     +  ++  
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSL--NPEN-------VYPYIQLACLLYKQGKFTESEA 365

Query: 540 LLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL 599
             N+             T+  +      +    G++         AI ++  +   +   
Sbjct: 366 FFNETKLK-------FPTLPEVPTFFAEILTDRGDFDT-------AIKQYDIAKRLEEVQ 411

Query: 600 F------GIALNQMGLACVQRYTINEAADL--FEEARTILEK--EYGPYHHDTLGVYSNL 649
                  G  + +  +   Q        D   F  A  +L K  E  P           L
Sbjct: 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA---KIGL 468

Query: 650 AGTYDAMGRIDDAIEILE 667
           A     M +ID+AIE+ E
Sbjct: 469 AQLKLQMEKIDEAIELFE 486

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 79.8 bits (197), Expect = 9e-16
 Identities = 63/505 (12%), Positives = 128/505 (25%), Gaps = 122/505 (24%)

Query: 172 PPADKRYEKGRRKQNNIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPALGPFLLKQTRE 231
              D    +   ++N    A K         + +     P    L +   G F       
Sbjct: 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS-FFGIFDSHLEVS 181

Query: 232 MISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLER 291
            +++  N   A  L   A++      +    +   +          S   Y+  +     
Sbjct: 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK-------STDMYHSLLSANTV 234

Query: 292 SVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVG 351
              +      ++ ALA        G  + +   + ++ +     + +             
Sbjct: 235 DDPL-----RENAALALC----YTGIFHFLKNNLLDAQVLLQESINLHPTP--------- 276

Query: 352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEA 411
            +  ++A          E  K  Q A+D++ E             R  G +     DY+ 
Sbjct: 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEY------PPTYYHR--GQMYFILQDYKN 328

Query: 412 ALEHYVLASMSMAANGHEL--DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE 469
           A E +  A          L  +       +        +F E+   +++           
Sbjct: 329 AKEDFQKAQ--------SLNPENVYPYIQLACLLYKQGKFTESEAFFNETK--------L 372

Query: 470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH---------GIPSEEIASG 520
             P +  V    A++    G    +    + A ++  +             I    I + 
Sbjct: 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL--EEVQEKIHVGIGPLIGKATILAR 430

Query: 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN 580
                       +   A+KLL KA ++    P                         +  
Sbjct: 431 QSSQDPTQLDEEKFNAAIKLLTKACELD---P---------------------RSEQAKI 466

Query: 581 TLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH 640
            L                       QM         I+EA +LFE++  IL +       
Sbjct: 467 GL------------------AQLKLQMEK-------IDEAIELFEDS-AILARTMDEKLQ 500

Query: 641 DTLGVYSNLAGTYDAMGRIDDAIEI 665
                    A T+    +I   +  
Sbjct: 501 ---------ATTFAEAAKIQKRLRA 516

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 48/386 (12%), Positives = 121/386 (31%), Gaps = 56/386 (14%)

Query: 280 GQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQ 339
           G +    P + +   +      Q +A+         G+ +        +I  Y   +E+ 
Sbjct: 1   GSHMNGEPDIAQLKGLS-PSQRQAYAVQLK----NRGNHFFTAKNFNEAIKYYQYAIELD 55

Query: 340 RQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLM 399
                  +         ++  ++ +   ++  +    AL+I  +++      +A  RR  
Sbjct: 56  -----PNEP---VFYSNISACYISTGDLEKVIEFTTKALEIKPDHS------KALLRR-- 99

Query: 400 GLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKA 459
               +S G++  A+        S+ +   + D ASI+       L      +A+   ++ 
Sbjct: 100 ASANESLGNFTDAMFDL-----SVLSLNGDFDGASIE-----PMLERNLNKQAMKVLNEN 149

Query: 460 LTAFKSAKGENHPAVASVFVRLADLYHKI-GKLRDSKSYCENALKIYGKPNHGIPSEEIA 518
           L+  +    +  P+  S+          +     ++ S  + A  +       + S    
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209

Query: 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDS 578
             L+    + +S +     +        +           A      G+ +++  N  D+
Sbjct: 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLREN-------AALALCYTGIFHFLKNNLLDA 262

Query: 579 YNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638
              L+ +I+   T           +   + L    +    E    F++A  +   +  P 
Sbjct: 263 QVLLQESINLHPTP---------NSYIFLALTLADKENSQEFFKFFQKA--V---DLNPE 308

Query: 639 HHDTLGVYSNLAGTYDAMGRIDDAIE 664
           +      Y +    Y  +    +A E
Sbjct: 309 YPP---TYYHRGQMYFILQDYKNAKE 331

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 47/416 (11%), Positives = 105/416 (25%), Gaps = 84/416 (20%)

Query: 163 SQGKSSNERPPADKRYE-KGRRKQNNIFSARKQRKFASLIAKFQNGAEDPLAAGLGNPAL 221
           S    ++     D   E       +N  +A      A             +A  L   + 
Sbjct: 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222

Query: 222 GPFLLKQTREMISSGENPQKALELAKR------------AMKSFEICANGKPSLEQVMCL 269
             +    +   +        AL L               A    +   N  P+       
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT---PNSY 279

Query: 270 HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSI 329
             LA          E     +++V++       ++    +      G  Y +L   +N+ 
Sbjct: 280 IFLALTLADKENSQEFFKFFQKAVDL-----NPEYPPTYY----HRGQMYFILQDYKNAK 330

Query: 330 LCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ---SL----QFDEAEKICQMALDIHR 382
             +     +  +                   ++Q    L    +F E+E           
Sbjct: 331 EDFQKAQSLNPEN---------------VYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

Query: 383 ENTSPASIEEAADRRLMGLICDSKGDYEAALEHY----------VLASMSMAANGHELDV 432
                              I   +GD++ A++ Y              + +     +  +
Sbjct: 376 TL--------PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427

Query: 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLR 492
            +   S     L   +F+ AI    KA         E  P      + LA L  ++ K+ 
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKAC--------ELDPRSEQAKIGLAQLKLQMEKID 479

Query: 493 DSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548
           ++    E++  +          +E           +    ++++ ++         
Sbjct: 480 EAIELFEDSAIL--ARTM----DEKLQAT-----TFAEAAKIQKRLRADPIISAKM 524

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 23/224 (10%)

Query: 448 RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507
                     +              A A       + +       ++  Y + A+++   
Sbjct: 2   SHMNGEPDIAQLK----GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--D 55

Query: 508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGV 567
           PN             +I+A Y S  +LE+ ++   KAL+I       +   +    +   
Sbjct: 56  PNE-------PVFYSNISACYISTGDLEKVIEFTTKALEI-------KPDHSKALLRRAS 101

Query: 568 MYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEA--ADLFE 625
                GN++D+   L          G     +    LN+  +  +      +        
Sbjct: 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161

Query: 626 EARTILEKEYGPYHHDTLGVYSNLAGTYD-AMGRIDDAIEILEY 668
            + T L   +G +         N +  YD A   + DA++ L  
Sbjct: 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYS 205

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 90.2 bits (224), Expect = 4e-19
 Identities = 55/429 (12%), Positives = 124/429 (28%), Gaps = 57/429 (13%)

Query: 249 AMKSFE-ICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALA 307
           AM     +  NG  +   +  +        ++ +  E    ++ +   P     Q     
Sbjct: 92  AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151

Query: 308 KFAG----CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ 363
           K        +    ++  + + E +   Y    E  ++++    +    +     +A   
Sbjct: 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211

Query: 364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSM 423
              F +A ++ +  LD + E+      + A      G+    K D   A E    A    
Sbjct: 212 ---FTKAARLFEEQLDKNNEDEKLKE-KLAISLEHTGIFKFLKNDPLGAHEDIKKA---- 263

Query: 424 AANGHELDV-ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLA 482
                EL    +    +           E    + KAL        +     +SV+    
Sbjct: 264 ----IELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL--------KLDSNNSSVYYHRG 311

Query: 483 DLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN 542
            +   +     +    + A ++   P +           I +A +    N+ +    L +
Sbjct: 312 QMNFILQNYDQAGKDFDKAKEL--DPEN-------IFPYIQLACLAYRENKFDDCETLFS 362

Query: 543 KALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGI 602
           +A +              +      +     ++         A+ ++  + E ++     
Sbjct: 363 EAKRK-------FPEAPEVPNFFAEILTDKNDFDK-------ALKQYDLAIELENK-LDG 407

Query: 603 ALNQMGLACVQRYTINEAADL--FEEARTILEK--EYGPYHHDTLGVYSNLAGTYDAMGR 658
               +     +   +     +  F EA  +LEK  +  P           LA        
Sbjct: 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ---AKIGLAQMKLQQED 464

Query: 659 IDDAIEILE 667
           ID+AI + E
Sbjct: 465 IDEAITLFE 473

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 89.8 bits (223), Expect = 6e-19
 Identities = 58/400 (14%), Positives = 121/400 (30%), Gaps = 58/400 (14%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSIL 330
           L+A + S+G   + + +  +++E+ P      D++       ++       LG+  +++ 
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKP------DYSKV----LLRRASANEGLGKFADAMF 94

Query: 331 CYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI 390
             +        + G+ +    E             +  E       A     E  S    
Sbjct: 95  DLSVL-----SLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL-STQPA 148

Query: 391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD 450
           +E  D++       S   +    +     + +     +E D   ++        S   +D
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPE--LTFANYDESNEADKELMNGLSNLYKRSPESYD 206

Query: 451 EAIFSYHKALTAFKSAKGEN------HPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504
           +A  S+ KA   F+    +N         +A                  +    + A+++
Sbjct: 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266

Query: 505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ 564
              P          +  I +A I    N+  +     +KALK+        S  + +   
Sbjct: 267 --FPR--------VNSYIYMALIMADRNDSTEYYNYFDKALKL-------DSNNSSVYYH 309

Query: 565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLF 624
            G M ++  NY         A   F  + E           Q+     +    ++   LF
Sbjct: 310 RGQMNFILQNYDQ-------AGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLF 361

Query: 625 EEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
            EA     K   P   +   V +  A         D A++
Sbjct: 362 SEA-----KRKFPEAPE---VPNFFAEILTDKNDFDKALK 393

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.9 bits (179), Expect = 2e-13
 Identities = 50/431 (11%), Positives = 124/431 (28%), Gaps = 61/431 (14%)

Query: 240 QKALELAKRAMKS----FEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI 295
           ++       A  +        A  +   ++ +      A    + +        + S E 
Sbjct: 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA 186

Query: 296 PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCR 355
                     L K +                 +   +   L+   +   +   ++  +  
Sbjct: 187 DKELMNGLSNLYKRS----PESYDKADESFTKAARLFEEQLDKNNEDE-KLKEKLAISLE 241

Query: 356 YVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEH 415
           +             A +  + A+++     S            M LI   + D      +
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY---------MALIMADRNDSTEYYNY 292

Query: 416 YVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA 475
           +     ++  +    + +S+    G     L  +D+A   + KA         E  P   
Sbjct: 293 F---DKALKLDS---NNSSVYYHRGQMNFILQNYDQAGKDFDKAK--------ELDPENI 338

Query: 476 SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELE 535
             +++LA L ++  K  D ++    A +    P                A I    N+ +
Sbjct: 339 FPYIQLACLAYRENKFDDCETLFSEAKRK--FPEA-------PEVPNFFAEILTDKNDFD 389

Query: 536 QAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNT--LKSAISKFRTSG 593
           +A+K  + A+++       ++ + GI   +  +       + +        A +    + 
Sbjct: 390 KALKQYDLAIEL-------ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442

Query: 594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY 653
           +        A   +    +Q+  I+EA  LFEE+      +      +       +   +
Sbjct: 443 KLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESA-----DLARTMEE---KLQAIT--F 491

Query: 654 DAMGRIDDAIE 664
               ++   I 
Sbjct: 492 AEAAKVQQRIR 502

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.4 bits (157), Expect = 6e-11
 Identities = 43/360 (11%), Positives = 111/360 (30%), Gaps = 54/360 (15%)

Query: 314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV--AEAHVQSLQFDEAE 371
             G+ +    + +++I  Y   LE++       D        Y   +  +V      +  
Sbjct: 11  DKGNQFFRNKKYDDAIKYYNWALELK------EDPVF-----YSNLSACYVSVGDLKKVV 59

Query: 372 KICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD 431
           ++   AL++  + +      +   RR      +  G +  A+        S+ +   + +
Sbjct: 60  EMSTKALELKPDYS------KVLLRR--ASANEGLGKFADAMFDL-----SVLSLNGDFN 106

Query: 432 VASIDCSI--GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL----- 484
            ASI+  +       ++++  E       A         +           L  +     
Sbjct: 107 DASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166

Query: 485 YHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544
           +  I K   + +  + + +   +  +G+             +  ++     +A +L  + 
Sbjct: 167 FFGIFKPELTFANYDESNEADKELMNGL----SNLYKRSPESYDKADESFTKAARLFEEQ 222

Query: 545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIAL 604
           L    +    +  +A      G+  ++  +   ++  +K AI  F             + 
Sbjct: 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV---------NSY 273

Query: 605 NQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
             M L    R    E  + F++A  +   +    +     VY +       +   D A +
Sbjct: 274 IYMALIMADRNDSTEYYNYFDKA--L---KLDSNNSS---VYYHRGQMNFILQNYDQAGK 325

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 87.7 bits (217), Expect = 2e-18
 Identities = 58/423 (13%), Positives = 122/423 (28%), Gaps = 48/423 (11%)

Query: 270 HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSI 329
           ++LA +    GQ   A+  L ++ E+   E      +            Y  +G++ +  
Sbjct: 55  NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114

Query: 330 LCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL--QFDEAEKICQMALDIHRENTSP 387
           +       +  +          E         ++    Q + A+   + AL+   +N   
Sbjct: 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174

Query: 388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDV-ASIDCSIGDAYLSL 446
            S    A  RL     D+    + A++    A   +  N     +   +   +       
Sbjct: 175 TSGLAIASYRL-----DNWPPSQNAIDPLRQA---IRLNPDNQYLKVLLALKLHKMREEG 226

Query: 447 ARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG 506
               E      +AL        E  P V  V    A  Y +  +   +    + AL+   
Sbjct: 227 EEEGEGEKLVEEAL--------EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-- 276

Query: 507 KPNHGIPSEEIAS-----GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGI 561
            PN+     +I           +      M    + ++L+  A+    K       +  +
Sbjct: 277 IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336

Query: 562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACV-QRYTINEA 620
            + +  ++ +   Y ++    +   SK     E       +   + G   + Q    ++A
Sbjct: 337 CSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKA 391

Query: 621 ADLFEEARTI----------------LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
              F E   I                + K     +         LA   +   ++  A E
Sbjct: 392 IHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451

Query: 665 ILE 667
             E
Sbjct: 452 DSE 454

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 71.9 bits (176), Expect = 3e-13
 Identities = 37/239 (15%), Positives = 74/239 (30%), Gaps = 22/239 (9%)

Query: 433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG-ENHPAVASVFVRLADLYHKIGKL 491
           A++   +        + + A+    KA    +     +        +   A +Y+ +G+L
Sbjct: 51  ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL 110

Query: 492 RDSKSYCENALKIYGK-PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK 550
            D + Y +    +  K  +                 +    N+ E+A     KAL+    
Sbjct: 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--- 167

Query: 551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA 610
               +       + + +  Y   N    +   ++AI   R +              + L 
Sbjct: 168 ----KPKNPEFTSGLAIASYRLDN----WPPSQNAIDPLRQAIRLNPD-NQYLKVLLALK 218

Query: 611 CVQRYTINEAADLFEEARTILEK--EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILE 667
             +     E      E   ++E+  E  P   D   V  + A  Y      D AIE+L+
Sbjct: 219 LHKMREEGEE---EGEGEKLVEEALEKAPGVTD---VLRSAAKFYRRKDEPDKAIELLK 271

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 45/356 (12%), Positives = 101/356 (28%), Gaps = 39/356 (10%)

Query: 238 NPQKALELAKRAMKSFEICANG-KPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI- 295
                     +     E  ++  +    ++ C      + C   Q   A    E+++E  
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168

Query: 296 PVLEDGQDHALAKFAGCMQLGDTYAML---GQIENSILCYTAGLEIQRQVLGETDHRVGE 352
           P       +          L      L      +N+I      + +           +  
Sbjct: 169 P------KNPEFTSG----LAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLAL 217

Query: 353 TCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAA 412
               +     +  +  E EK+ + AL+     T           R        K + + A
Sbjct: 218 KLHKM---REEGEEEGEGEKLVEEALEKAPGVTDV--------LRSAAKFYRRKDEPDKA 266

Query: 413 LEHY--VLASMSMAANGH----ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA 466
           +E     L  +   A  H        A +   +      +    + +     A+   K A
Sbjct: 267 IELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326

Query: 467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAA 526
             E +  +  V   LA L+    +  +++ Y +       +     P  +    L     
Sbjct: 327 D-EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELT---PVAKQLLHLRYGNF 380

Query: 527 IYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTL 582
               M   ++A+    + +KI  K+  ++     ++    +     G  S++ + L
Sbjct: 381 QLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVL 436

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 46/347 (13%), Positives = 99/347 (28%), Gaps = 60/347 (17%)

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY- 416
           AE H  +  F    K+  + ++    +        A+   +                   
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFH--------ASCLPVHIGTLVELNKANELFYLSH 80

Query: 417 -VLASMSMAANGHELDVASIDCSIGDAYLSLAR-FDEAIFSYHKALTAFKSAKGENHPAV 474
            ++                   ++G  YL +    + A     KA T             
Sbjct: 81  KLVDLYPSNPVSW--------FAVGCYYLMVGHKNEHARRYLSKATTL--------EKTY 124

Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534
              ++     +    +   + +    A ++       +P       ++ I   Y   N  
Sbjct: 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLP-------MLYIGLEYGLTNNS 175

Query: 535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG- 593
           + A +  ++AL I             +  ++GV+ +  G +  +      A+ K +  G 
Sbjct: 176 KLAERFFSQALSI-------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228

Query: 594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY 653
           E     +   LN +G  C +     EA D   +A         P +      YS +   +
Sbjct: 229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA-----LVLIPQNAS---TYSAIGYIH 280

Query: 654 DAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700
             MG  ++A++     +G+          D       L   ++    
Sbjct: 281 SLMGNFENAVDYFHTALGL--------RRDDTFSVTMLGHCIEMYIG 319

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 52/313 (16%), Positives = 103/313 (32%), Gaps = 57/313 (18%)

Query: 240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI-PVL 298
           +   +L    M+         P     + +H+   +   L + NE   +  + V++ P  
Sbjct: 39  KMCYKLTSVVMEKD-------PFHASCLPVHIGTLVE--LNKANELFYLSHKLVDLYP-- 87

Query: 299 EDGQDHALAKFAGCMQLGDTYAMLGQ-IENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357
                + ++ FA    +G  Y M+G   E++    +    +        +   G    ++
Sbjct: 88  ----SNPVSWFA----VGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPA--WI 129

Query: 358 AEAHVQSLQ--FDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEH 415
           A  H  +++   D+A      A  + +    P           +GL      + + A   
Sbjct: 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY--------IGLEYGLTNNSKLAERF 181

Query: 416 YVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH-PAV 474
           +  A +S+A     +        +G        +  A   +  AL   K+   E      
Sbjct: 182 FSQA-LSIAPEDPFV-----MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235

Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534
             +   L  +  K+ K  ++  Y   AL +   P +       AS    I  I+  M   
Sbjct: 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQN-------ASTYSAIGYIHSLMGNF 286

Query: 535 EQAVKLLNKALKI 547
           E AV   + AL +
Sbjct: 287 ENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 72.7 bits (179), Expect = 5e-14
 Identities = 40/329 (12%), Positives = 100/329 (30%), Gaps = 65/329 (19%)

Query: 269 LHVLAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQ-LGDTYAMLGQIE 326
           +  LA  H     +     +    +E  P             A C+     T   L +  
Sbjct: 25  VVSLAERHYYNCDFKMCYKLTSVVMEKDP-----------FHASCLPVHIGTLVELNKAN 73

Query: 327 NSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAH--------VQSLQFDEAEKICQMAL 378
                                H++ +       +         +   + + A +    A 
Sbjct: 74  ELFYLS---------------HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT 118

Query: 379 DIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCS 438
            + +    PA I         G     + +++ A+  Y  A+  M               
Sbjct: 119 TLEKTYG-PAWI-------AYGHSFAVESEHDQAMAAYFTAAQLMK------GCHLPMLY 164

Query: 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498
           IG  Y        A   + +AL           P    V   +  +  + G+ + ++ + 
Sbjct: 165 IGLEYGLTNNSKLAERFFSQAL--------SIAPEDPFVMHEVGVVAFQNGEWKTAEKWF 216

Query: 499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTI 558
            +AL+      + +  ++    L ++  + + + +  +A+    +AL +  +        
Sbjct: 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN------- 269

Query: 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAIS 587
           A   + +G ++ + GN+ ++ +   +A+ 
Sbjct: 270 ASTYSAIGYIHSLMGNFENAVDYFHTALG 298

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 24/188 (12%), Positives = 56/188 (29%), Gaps = 26/188 (13%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSIL 330
           +   +        A     +++ I P      +          ++G      G+ + +  
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAP------EDPFV----MHEVGVVAFQNGEWKTAEK 214

Query: 331 CYTAGLEIQRQVLGETDHRVGETCRY-VAEAHVQSLQFDEAEKICQMALDIHRENTSPAS 389
            +   LE  + +  E      E     +     +  ++ EA    + AL +      P  
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-----IP-- 267

Query: 390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARF 449
            + A+    +G I    G++E A++++     ++       D       +G         
Sbjct: 268 -QNASTYSAIGYIHSLMGNFENAVDYF---HTALGLRR---DDTFSVTMLGHCIEMYIGD 320

Query: 450 DEAIFSYH 457
            EA     
Sbjct: 321 SEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 11/106 (10%)

Query: 237 ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI- 295
              + A +    A++  +   N     +    L+ L  +   L +Y EA+    +++ + 
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266

Query: 296 PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ 341
           P       +A    A    +G  ++++G  EN++  +   L ++R 
Sbjct: 267 P------QNASTYSA----IGYIHSLMGNFENAVDYFHTALGLRRD 302

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 86.7 bits (215), Expect = 4e-18
 Identities = 52/438 (11%), Positives = 109/438 (24%), Gaps = 84/438 (19%)

Query: 242 ALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI------ 295
           A+  +K A+         K              +    G+ +EA    ++ ++       
Sbjct: 72  AMGKSKAALPDLTKVIQLKMDFTAA--RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE 129

Query: 296 PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCR 355
                 Q     +              G    +I      LE+                R
Sbjct: 130 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC------VWDAELRELR 183

Query: 356 YVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEH 415
             AE  ++  +  +A    + A  +  +NT             +  +    GD+E +L  
Sbjct: 184 --AECFIKEGEPRKAISDLKAASKLKNDNTEA--------FYKISTLYYQLGDHELSLSE 233

Query: 416 YVLA-------SMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG 468
                          A       +  +     +  +   R+ +A   Y   +      + 
Sbjct: 234 VRECLKLDQDHKRCFAHYKQVKKLNKLI-ESAEELIRDGRYTDATSKYESVM----KTEP 288

Query: 469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIY 528
                      R+   + K  K  ++   C   L++  +P++        + L D A  Y
Sbjct: 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDN-------VNALKDRAEAY 339

Query: 529 QSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588
                 ++A++    A +                           N       L+ A   
Sbjct: 340 LIEEMYDEAIQDYETAQEH------------------------NENDQQIREGLEKAQRL 375

Query: 589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSN 648
            + S +K+     + + +                  +E      K    +H D       
Sbjct: 376 LKQS-QKRDYYKILGVKRNA--------------KKQEIIKAYRKLALQWHPDNFQNEEE 420

Query: 649 LAGTYDAMGRIDDAIEIL 666
                     I  A E+L
Sbjct: 421 KKKAEKKFIDIAAAKEVL 438

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 57/420 (13%), Positives = 126/420 (30%), Gaps = 79/420 (18%)

Query: 305 ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY-VAEAHVQ 363
           ++A     ++LG      GQ+ +++  + A ++                  Y  A   + 
Sbjct: 22  SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------YIAYYRRATVFLA 72

Query: 364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA---- 419
             +   A       + +  + T       A  +R  G +   +G  + A + +       
Sbjct: 73  MGKSKAALPDLTKVIQLKMDFT------AARLQR--GHLLLKQGKLDEAEDDFKKVLKSN 124

Query: 420 -----SMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV 474
                     +   + D      S          +  AI    K L        E     
Sbjct: 125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL--------EVCVWD 176

Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534
           A +    A+ + K G+ R + S  + A K+  K ++             I+ +Y  + + 
Sbjct: 177 AELRELRAECFIKEGEPRKAISDLKAASKL--KNDN-------TEAFYKISTLYYQLGDH 227

Query: 535 EQAVKLLNKALKI----------YGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS 584
           E ++  + + LK+          Y +       I     +        G Y+D+ +  +S
Sbjct: 228 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI-----ESAEELIRDGRYTDATSKYES 282

Query: 585 AISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG 644
            +          +     +  ++     +     EA  +  E    L+ E  P + +   
Sbjct: 283 VMKTE----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV---LQME--PDNVN--- 330

Query: 645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNR 704
              + A  Y      D+AI+          E     N + +  +  L +  +   + + R
Sbjct: 331 ALKDRAEAYLIEEMYDEAIQDY--------ETAQEHNENDQQIREGLEKAQRLLKQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 48/370 (12%), Positives = 101/370 (27%), Gaps = 77/370 (20%)

Query: 375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVAS 434
              +D+  EN    S+ +      +G    + G    AL  +  A         + D  +
Sbjct: 8   SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAA--------VDGDPDN 59

Query: 435 IDC--SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLR 492
                     +L++ +   A+    K +        +      +  ++   L  K GKL 
Sbjct: 60  YIAYYRRATVFLAMGKSKAALPDLTKVI--------QLKMDFTAARLQRGHLLLKQGKLD 111

Query: 493 DSKSYCENALKIYGKPNH--------GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544
           +++   +  LK    P+          +   +    L   A       +   A+  L+K 
Sbjct: 112 EAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169

Query: 545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK--------------FR 590
           L++           A +       +   G    + + LK+A                 + 
Sbjct: 170 LEV-------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222

Query: 591 TSGEKKSAL------------FGIALNQMGLACVQRYTINEAADLF-----EEARTILEK 633
             G+ + +L                             I  A +L       +A +  E 
Sbjct: 223 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282

Query: 634 --EYGPYHHDTLG-VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR 690
             +  P   +        +   +    +  +AI +   V+ M         PD  +  + 
Sbjct: 283 VMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKD 334

Query: 691 LAELLKEAGR 700
            AE       
Sbjct: 335 RAEAYLIEEM 344

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 79.5 bits (197), Expect = 1e-17
 Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 6/167 (3%)

Query: 427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH 486
           G          ++G+ +  L  F +A+ ++ + L   K     +  A    +  L + Y 
Sbjct: 3   GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYI 60

Query: 487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK 546
            +G+   +  Y +  L +  +       E  A     +   Y  + + E+A+    K L 
Sbjct: 61  FLGEFETASEYYKKTLLLARQ-LKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117

Query: 547 IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG 593
           I  +    +         +G  Y   GN+  + +  +  +   R  G
Sbjct: 118 IAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 163

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 5/159 (3%)

Query: 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS 576
                 ++   +  +     AV    + L I  K  G ++      + +G  Y   G + 
Sbjct: 8   QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERIAYSNLGNAYIFLGEFE 66

Query: 577 DSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG 636
            +    K  +   R   ++       +   +G          +A D   +   I ++   
Sbjct: 67  TASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 637 PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE 675
                      +L   Y A+G  D A+   E  + +  E
Sbjct: 125 --RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 9/150 (6%)

Query: 268 CLHVLAAIHCSLGQYNEAIPVLERSVEIPV-LEDGQDHALAKFAGCMQLGDTYAMLGQIE 326
               L   H  LG + +A+   E+ + I     D     +A       LG+ Y  LG+ E
Sbjct: 11  AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIA----YSNLGNAYIFLGEFE 66

Query: 327 NSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS 386
            +   Y   L + RQ+         ++C  +   +     +++A       L I +E   
Sbjct: 67  TASEYYKKTLLLARQLKDRAV--EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 387 PASIEEAADRRLMGLICDSKGDYEAALEHY 416
                 A     +G    + G+++ A+   
Sbjct: 125 RIGEGRACWS--LGNAYTALGNHDQAMHFA 152

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 12/148 (8%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
           N + A+   ++ +   +     K +  + +    L   +  LG++  A    ++++ +  
Sbjct: 24  NFRDAVIAHEQRLLIAKE-FGDKAA--ERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80

Query: 298 -LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHR-VGETCR 355
            L+D    A +    C  LG+TY +L   E +I  +   L I +++    D    G  C 
Sbjct: 81  QLKDRAVEAQS----CYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---KDRIGEGRACW 133

Query: 356 YVAEAHVQSLQFDEAEKICQMALDIHRE 383
            +  A+      D+A    +  L+I RE
Sbjct: 134 SLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 20/124 (16%), Positives = 49/124 (39%), Gaps = 4/124 (3%)

Query: 552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLAC 611
           PG ++        +G  +Y+ GN+ D+    +  +   +  G+K +    IA + +G A 
Sbjct: 2   PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RIAYSNLGNAY 59

Query: 612 VQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG 671
           +       A++ +++   +  +              +L  TY  +   + AI+     + 
Sbjct: 60  IFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117

Query: 672 MREE 675
           + +E
Sbjct: 118 IAQE 121

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 15/104 (14%)

Query: 240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV-L 298
           +K L LA++           +    +    + L   +  L  Y +AI    + + I   L
Sbjct: 73  KKTLLLARQL--------KDRAV--EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 122

Query: 299 EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV 342
           +D      A    C  LG+ Y  LG  + ++      LEI R+V
Sbjct: 123 KDRIGEGRA----CWSLGNAYTALGNHDQAMHFAEKHLEISREV 162

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 81.9 bits (202), Expect = 4e-17
 Identities = 29/228 (12%), Positives = 74/228 (32%), Gaps = 12/228 (5%)

Query: 444 LSLARFDEAIFSYHKALTAFKSA---KGENHPAVASVFVRLADLYHKIGKLRDSKSYCEN 500
           ++  +  EA     KA    K++      ++ + AS + + A  +    +L  +K     
Sbjct: 2   IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61

Query: 501 ALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG 560
             + +            A        + + +  + +AV+ + KA  +Y    G   T A 
Sbjct: 62  EAEAHANNRS---LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY-VENGTPDTAAM 117

Query: 561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEA 620
              + G       + S + +  + A + F      + A     + +     V++   +EA
Sbjct: 118 ALDRAGK-LMEPLDLSKAVHLYQQAAAVFENEERLRQA--AELIGKASRLLVRQQKFDEA 174

Query: 621 ADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEY 668
           A   ++ +++ ++     +                      A + +  
Sbjct: 175 AASLQKEKSMYKE--MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 81.1 bits (200), Expect = 7e-17
 Identities = 38/230 (16%), Positives = 71/230 (30%), Gaps = 13/230 (5%)

Query: 314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKI 373
           +    +    Q+E +   Y    E              +             +  EA + 
Sbjct: 41  KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFH--AAKAFEQAGMMLKDLQRMPEAVQY 98

Query: 374 CQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVA 433
            + A  ++ EN +P   + AA             D   A+  Y  A+            A
Sbjct: 99  IEKASVMYVENGTP---DTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAA 155

Query: 434 SIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRD 493
            +        +   +FDEA  S  K  + +K  + EN+P      +    +         
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYK--EMENYPTCYKKCIAQVLVQLHRADYVA 213

Query: 494 SKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNK 543
           ++     +  I G       SE+ A+ L D+   Y   +E EQ +++   
Sbjct: 214 AQKCVRESYSIPGFSG----SEDCAA-LEDLLQAYDEQDE-EQLLRVCRS 257

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 16/195 (8%)

Query: 487 KIGKLRDSKSYCENALKIY------GKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKL 540
              K+ ++  +   A K         KP++    +  AS     A  +++  +LEQA   
Sbjct: 3   AAQKISEAHEHIAKAEKYLKTSFMKWKPDY----DSAASEYAKAAVAFKNAKQLEQAKDA 58

Query: 541 LNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALF 600
             +  + +          A    Q G+M        ++   ++ A   +  +G   +A  
Sbjct: 59  YLQEAEAHANN-RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA-- 115

Query: 601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRID 660
            +AL++ G        +++A  L+++A  + E E          +    +       + D
Sbjct: 116 AMALDRAGKLMEPLD-LSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFD 172

Query: 661 DAIEILEYVVGMREE 675
           +A   L+    M +E
Sbjct: 173 EAAASLQKEKSMYKE 187

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 10/125 (8%)

Query: 237 ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIP 296
            +  KA+ L ++A   FE     +   +    +   + +     +++EA   L++   + 
Sbjct: 129 LDLSKAVHLYQQAAAVFE--NEERLR-QAAELIGKASRLLVRQQKFDEAAASLQKEKSM- 184

Query: 297 VLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY 356
             E        K   C+              +  C      I     G +          
Sbjct: 185 YKEMENYPTCYKK--CIAQVLVQLHRADYVAAQKCVRESYSIP----GFSGSEDCAALED 238

Query: 357 VAEAH 361
           + +A+
Sbjct: 239 LLQAY 243

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.9 bits (203), Expect = 7e-17
 Identities = 59/409 (14%), Positives = 125/409 (30%), Gaps = 83/409 (20%)

Query: 314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKI 373
           +LG      GQ+ +++  + A ++         D          A   +   +   A   
Sbjct: 8   ELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPD 59

Query: 374 CQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA---------SMSMA 424
               + +  + T       A  +R  G +   +G  + A + +                 
Sbjct: 60  LTKVIALKMDFT------AARLQR--GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111

Query: 425 ANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL 484
           +   + D      S        A +  AI    K L        E     A +    A+ 
Sbjct: 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL--------EVCVWDAELRELRAEC 163

Query: 485 YHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544
           + K G+ R + S  + A K+  K ++             I+ +Y  + + E ++  + + 
Sbjct: 164 FIKEGEPRKAISDLKAASKL--KSDN-------TEAFYKISTLYYQLGDHELSLSEVREC 214

Query: 545 LKI----------YGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594
           LK+          Y +       I     +        G Y+D       A SK+ +  +
Sbjct: 215 LKLDQDHKRCFAHYKQVKKLNKLI-----ESAEELIRDGRYTD-------ATSKYESVMK 262

Query: 595 KK---SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAG 651
            +   +     +  ++     +     EA  +  E    L+ E  P + +      + A 
Sbjct: 263 TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV---LQME--PDNVN---ALKDRAE 314

Query: 652 TYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700
            Y      D+AI+  +Y      E     N + +  +  L +  +   +
Sbjct: 315 AYLIEEMYDEAIQ--DY------EAAQEHNENDQQIREGLEKAQRLLKQ 355

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 80.0 bits (198), Expect = 3e-16
 Identities = 45/352 (12%), Positives = 109/352 (30%), Gaps = 55/352 (15%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSIL 330
            A +  ++G+   A+P L + + +        D   A+     Q G      G+++ +  
Sbjct: 43  RATVFLAMGKSKAALPDLTKVIALKM------DFTAARL----QRGHLLLKQGKLDEAED 92

Query: 331 CYTAGLEIQ------RQVLGETDH-RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE 383
            +   L+        ++   +       +  R  A        +  A       L++   
Sbjct: 93  DFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--- 149

Query: 384 NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID--CSIGD 441
                  E    R L       +G+   A+     AS        +L   + +    I  
Sbjct: 150 --CVWDAE---LRELRAECFIKEGEPRKAISDLKAAS--------KLKSDNTEAFYKIST 196

Query: 442 AYLSLARFDEAIFSYHKALT---AFKSAKGENHPAVASVFVRL--ADLYHKIGKLRDSKS 496
            Y  L   + ++    + L      K     ++  V  +   +  A+   + G+  D+ S
Sbjct: 197 LYYQLGDHELSLSEVRECLKLDQDHKRCF-AHYKQVKKLNKLIESAEELIRDGRYTDATS 255

Query: 497 YCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS 556
             E+ +K   +P+    +E        I   +    +  +A+++ ++ L++       + 
Sbjct: 256 KYESVMKT--EPSV---AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-------EP 303

Query: 557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMG 608
                       Y +   Y ++    ++A        + +  L   A   + 
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL-EKAQRLLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 70.0 bits (172), Expect = 6e-13
 Identities = 34/314 (10%), Positives = 84/314 (26%), Gaps = 79/314 (25%)

Query: 240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE 299
           +K L+      +  E  +      +++  L   A        Y  AI  L++ +E+    
Sbjct: 95  KKVLKSNPSEQEEKEAESQLV-KADEMQRLRSQALDAFDGADYTAAITFLDKILEV---- 149

Query: 300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ------VLGETDHRVGET 353
                A  +        + +   G+   +I    A  +++         +    +++G  
Sbjct: 150 -CVWDAELRE----LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG-- 202

Query: 354 CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAAL 413
                         + +    +  L +                           D++   
Sbjct: 203 ------------DHELSLSEVRECLKL-------------------------DQDHKRCF 225

Query: 414 EHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPA 473
            HY                        +  +   R+ +A   Y   +      +      
Sbjct: 226 AHYKQVKKLNKLI-----------ESAEELIRDGRYTDATSKYESVM----KTEPSVAEY 270

Query: 474 VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE 533
                 R+   + K  K  ++   C   L++  +P++        + L D A  Y     
Sbjct: 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDN-------VNALKDRAEAYLIEEM 321

Query: 534 LEQAVKLLNKALKI 547
            ++A++    A + 
Sbjct: 322 YDEAIQDYEAAQEH 335

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 29/195 (14%), Positives = 60/195 (30%), Gaps = 21/195 (10%)

Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534
               + L       G+L D+ S    A+     P++              A ++ +M + 
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDN-------YIAYYRRATVFLAMGKS 53

Query: 535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594
           + A+  L K + +       +        Q G +    G   ++ +  K  +    +  E
Sbjct: 54  KAALPDLTKVIAL-------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE 106

Query: 595 KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK--EYGPYHHDTLGVYSNLAGT 652
           +K A   +           +         +  A T L+K  E   +  +   +    A  
Sbjct: 107 EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE---LRELRAEC 163

Query: 653 YDAMGRIDDAIEILE 667
           +   G    AI  L+
Sbjct: 164 FIKEGEPRKAISDLK 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 77.3 bits (191), Expect = 8e-16
 Identities = 32/269 (11%), Positives = 70/269 (26%), Gaps = 38/269 (14%)

Query: 399 MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK 458
                    +Y  A+E +   +   A      +   I       Y  LA++D A     K
Sbjct: 9   YADFLFKNNNYAEAIEVF---NKLEAKKY---NSPYIYNRRAVCYYELAKYDLAQ----K 58

Query: 459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA 518
            +  + S       A ++ F     +  K G+   +    + A+                
Sbjct: 59  DIETYFSKVNAT-KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--DTTR-------L 108

Query: 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDS 578
                I + + +      A++ + K ++         +T   +  ++G  YY    Y  +
Sbjct: 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------TTTDPKVFYELGQAYYYNKEYVKA 161

Query: 579 YNTLKSAISKFRTSGEKKSALFGIALNQMGLACV---QRYTINEAADLFEEARTILEKEY 635
            ++    +                       A            A   +E+   +     
Sbjct: 162 DSSFVKVLELKPNIYI--------GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG 213

Query: 636 GPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
             Y  + +     +A  Y        A  
Sbjct: 214 AKYKDELIEANEYIAYYYTINRDKVKADA 242

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 68.8 bits (169), Expect = 5e-13
 Identities = 39/285 (13%), Positives = 80/285 (28%), Gaps = 52/285 (18%)

Query: 313 MQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEK 372
            +  D          +I  +               +         A  + +  ++D A+K
Sbjct: 7   FRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQK 58

Query: 373 ICQM---ALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE 429
             +     ++  +          +AD    G I   KG    A++ Y  A         +
Sbjct: 59  DIETYFSKVNATKAK--------SADFEYYGKILMKKGQDSLAIQQYQAAV--------D 102

Query: 430 L--DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK 487
                  +   IG  + +   F  AI    K +                VF  L   Y+ 
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI--------RPTTTDPKVFYELGQAYYY 154

Query: 488 IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMN---ELEQAVKLLNKA 544
             +   + S     L++  KPN          G +  A    + +   +   A     K 
Sbjct: 155 NKEYVKADSSFVKVLEL--KPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKL 205

Query: 545 LKIYGKTPGQQSTIAGIEA--QMGVMYYMTGNYSDSYNTLKSAIS 587
           +++      +      IEA   +   Y +  +   +    K+ ++
Sbjct: 206 IEVCAPGGAKYKDEL-IEANEYIAYYYTINRDKVKADAAWKNILA 249

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 35/284 (12%), Positives = 72/284 (25%), Gaps = 56/284 (19%)

Query: 237 ENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIP 296
            N  +A+E+  +           K +   +   +  A  +  L +Y+ A   +E      
Sbjct: 17  NNYAEAIEVFNKLEAK-------KYNSPYI--YNRRAVCYYELAKYDLAQKDIETYFS-- 65

Query: 297 VLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY 356
            +   +  +          G      GQ   +I  Y A ++         D    +    
Sbjct: 66  KVNATKAKSAD----FEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQ 113

Query: 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY 416
           +         F  A +  +  +     +              +G       +Y  A   +
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTD--------PKVFYELGQAYYYNKEYVKADSSF 165

Query: 417 VLASMSMAANGHELDVASIDCSIGDAYLSLAR----------FDEAIFSYHKALTAFKSA 466
           V                 +  +I   YL  AR             A   Y K +      
Sbjct: 166 VKV-------------LELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212

Query: 467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510
             +    +      +A  Y        + +  +N L +   P +
Sbjct: 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTN 254

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 39/285 (13%), Positives = 77/285 (27%), Gaps = 52/285 (18%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSIL 330
            A        Y EAI V  +            +          +    Y  L + + +  
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKY------NSPYIYN----RRAVCYYELAKYDLAQK 58

Query: 331 ---CYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP 387
               Y + +                   Y  +  ++  Q   A +  Q A+D        
Sbjct: 59  DIETYFSKVNA--------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR--- 107

Query: 388 ASIEEAADRRLMGLICDSKGDYEAALEHY--VLASMSMAANGHELDVASIDCSIGDAYLS 445
                      +G    +KG++  A+++    +   +                +G AY  
Sbjct: 108 -----LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVF--------YELGQAYYY 154

Query: 446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG---KLRDSKSYCENAL 502
              + +A  S+ K L        E  P +   ++  A          K   +K Y E  +
Sbjct: 155 NKEYVKADSSFVKVL--------ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206

Query: 503 KIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
           ++          +E+      IA  Y    +  +A       L +
Sbjct: 207 EVCAP-GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 24/190 (12%), Positives = 43/190 (22%), Gaps = 29/190 (15%)

Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534
             V  R AD   K     ++            K N               A  Y  + + 
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNS-------PYIYNRRAVCYYELAKY 53

Query: 535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594
           + A K +         T       +      G +    G  S +    ++A+ +  T  +
Sbjct: 54  DLAQKDIETYFSKVNATK----AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD 109

Query: 595 KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD 654
                      Q+G     +     A    E+    +              +  L   Y 
Sbjct: 110 --------MYGQIGSYFYNKGNFPLAIQYMEKQ---IRPT--TTDPKV---FYELGQAYY 153

Query: 655 AMGRIDDAIE 664
                  A  
Sbjct: 154 YNKEYVKADS 163

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 78.3 bits (193), Expect = 3e-15
 Identities = 48/429 (11%), Positives = 98/429 (22%), Gaps = 77/429 (17%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
             ++ALE  +R +          P  EQV+ +        +L      +PVL ++  +  
Sbjct: 114 GGKQALETVQRLLPVLCQAHGLTP--EQVVAIASHDGGKQALETVQALLPVLCQAHGLT- 170

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357
                +  +A        G     L  ++  +        +           V       
Sbjct: 171 ----PEQVVA----IASNGGGKQALETVQRLLPVLCQAHGL------TPQQVVAIASN-- 214

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417
                          +   A  +     +P  +   A     G    +    +  L    
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGL-----TPQQVVAIASN---GGGKQALETVQRLLPVLC 266

Query: 418 LASMSMAANGHELDVASID--CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA 475
            A        H L    +    S      +L      +    +A            P   
Sbjct: 267 QA--------HGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAH--------GLTPQQV 310

Query: 476 SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELE 535
                       +  ++        A  +   P            +       Q++  ++
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGL--TPQQ-------VVAIASHDGGKQALETVQ 361

Query: 536 QAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK 595
           + + +L +A  +   TP Q   IA      G               L  A          
Sbjct: 362 RLLPVLCQAHGL---TPEQVVAIAS----NGGGKQALETVQRLLPVLCQAHGLTPEQVV- 413

Query: 596 KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA 655
                  A+           T+     +  +A  +      P         ++  G   A
Sbjct: 414 -------AIASHDGGKQALETVQRLLPVLCQAHGL-----TPQQVVA---IASNGGGRPA 458

Query: 656 MGRIDDAIE 664
           +  I   + 
Sbjct: 459 LESIVAQLS 467

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 77.9 bits (192), Expect = 4e-15
 Identities = 45/433 (10%), Positives = 105/433 (24%), Gaps = 79/433 (18%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI-P 296
             ++ALE  +R +          P  +QV+ +        +L      +PVL ++  + P
Sbjct: 80  GGKQALETVQRLLPVLCQAHGLTP--QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 137

Query: 297 VLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY 356
                 +  +A              L  ++  +        +  + +             
Sbjct: 138 ------EQVVA----IASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASN------- 180

Query: 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY 416
                           +   A  +     +P  +   A     G    +    +  L   
Sbjct: 181 -GGGKQALETVQRLLPVLCQAHGL-----TPQQVVAIASN---GGGKQALETVQRLLPVL 231

Query: 417 VLASMSMAANGHELDVASID--CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV 474
             A        H L    +    S G    +L      +    +A            P  
Sbjct: 232 CQA--------HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--------GLTPQQ 275

Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534
                  +     +  ++        A  +   P            +       Q++  +
Sbjct: 276 VVAIASNSGGKQALETVQRLLPVLCQAHGL--TPQQ-------VVAIASNGGGKQALETV 326

Query: 535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594
           ++ + +L +A  +   TP Q   IA                       +  +     +  
Sbjct: 327 QRLLPVLCQAHGL---TPQQVVAIAS----HDGGKQALETV-------QRLLPVLCQAHG 372

Query: 595 KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD 654
                  +A+   G       T+     +  +A  +      P         ++  G   
Sbjct: 373 LTPE-QVVAIASNGGGKQALETVQRLLPVLCQAHGL-----TPEQVVA---IASHDGGKQ 423

Query: 655 AMGRIDDAIEILE 667
           A+  +   + +L 
Sbjct: 424 ALETVQRLLPVLC 436

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 48/443 (10%), Positives = 109/443 (24%), Gaps = 87/443 (19%)

Query: 238 NPQKALELAKR-------AMKSFEICANGKP---SLEQVMCLHVLAAIHCSLGQYNEAIP 287
           +  + L++AKR       A+ ++     G P   + EQV+ +        +L      +P
Sbjct: 34  DTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLP 93

Query: 288 VLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGET 346
           VL ++  + P         +A              L  ++  +        +  + +   
Sbjct: 94  VLCQAHGLTP------QQVVAIA----SHDGGKQALETVQRLLPVLCQAHGLTPEQV--- 140

Query: 347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSK 406
                                     +   A  +     +P  +   A     G    + 
Sbjct: 141 -----VAIASHDGGKQALETVQALLPVLCQAHGL-----TPEQVVAIASN---GGGKQAL 187

Query: 407 GDYEAALEHYVLASMSMAANGHELDVASID--CSIGDAYLSLARFDEAIFSYHKALTAFK 464
              +  L     A        H L    +    S G    +L      +    +A     
Sbjct: 188 ETVQRLLPVLCQA--------HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL-- 237

Query: 465 SAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI 524
                  P               +  ++        A  +   P            +   
Sbjct: 238 ------TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL--TPQQ-------VVAIASN 282

Query: 525 AAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS 584
           +   Q++  +++ + +L +A  +   TP Q   IA      G                  
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGL---TPQQVVAIAS----NGGGKQALETVQR------- 328

Query: 585 AISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG 644
            +     +         +A+           T+     +  +A  +      P       
Sbjct: 329 LLPVLCQAHGLTPQ-QVVAIASHDGGKQALETVQRLLPVLCQAHGL-----TPEQVVA-- 380

Query: 645 VYSNLAGTYDAMGRIDDAIEILE 667
             ++  G   A+  +   + +L 
Sbjct: 381 -IASNGGGKQALETVQRLLPVLC 402

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 31/313 (9%), Positives = 69/313 (22%), Gaps = 56/313 (17%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI-P 296
             ++ALE  +R +          P  +QV+ +        +L      +PVL ++  + P
Sbjct: 216 GGKQALETVQRLLPVLCQAHGLTP--QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273

Query: 297 VLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY 356
                    +A              L  ++  +        +  Q +             
Sbjct: 274 ------QQVVA----IASNSGGKQALETVQRLLPVLCQAHGLTPQQV--------VAIAS 315

Query: 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY 416
                           +   A  +     +P  +   A          +    +  L   
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGL-----TPQQVVAIASH---DGGKQALETVQRLLPVL 367

Query: 417 VLASMSMAANGHELDVASID--CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV 474
             A        H L    +    S G    +L      +    +A            P  
Sbjct: 368 CQA--------HGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH--------GLTPEQ 411

Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534
                        +  ++        A  +   P            +        ++  +
Sbjct: 412 VVAIASHDGGKQALETVQRLLPVLCQAHGL--TPQQ-------VVAIASNGGGRPALESI 462

Query: 535 EQAVKLLNKALKI 547
              +   + AL  
Sbjct: 463 VAQLSRPDPALAA 475

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 72.8 bits (179), Expect = 9e-14
 Identities = 38/292 (13%), Positives = 87/292 (29%), Gaps = 48/292 (16%)

Query: 270 HVLAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENS 328
             L        Q   AI  L R +E+ P      D+  A     M L  ++        +
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELKP------DNQTA----LMALAVSFTNESLQRQA 151

Query: 329 ILCYTAGLEIQ-------RQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH 381
                  L                         + +  + +    F E +++   A+ + 
Sbjct: 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 211

Query: 382 RENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL--DVASIDCSI 439
             +       +   +  +G++ +  G+Y+ A++ +  A          +  +   +   +
Sbjct: 212 PTSI------DPDVQCGLGVLFNLSGEYDKAVDCFTAAL--------SVRPNDYLLWNKL 257

Query: 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE 499
           G    +  + +EA+ +Y +AL        E  P        L      +G  R++  +  
Sbjct: 258 GATLANGNQSEEAVAAYRRAL--------ELQPGYIRSRYNLGISCINLGAHREAVEHFL 309

Query: 500 NALKIYGKPNHGIPSEEIASGLIDI----AAIYQSMNELEQAVKLLNKALKI 547
            AL +  +     P  E  +   +I          + + +       + L  
Sbjct: 310 EALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 46/336 (13%), Positives = 99/336 (29%), Gaps = 66/336 (19%)

Query: 368 DEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY--VLASMSMAA 425
           D              EN     + +       GL    +GD   A+  +   +       
Sbjct: 43  DLTSATYDKGYQFEEEN----PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM 98

Query: 426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY 485
                        +G       +   AI +  + L        E  P   +  + LA  +
Sbjct: 99  EAW--------QYLGTTQAENEQELLAISALRRCL--------ELKPDNQTALMALAVSF 142

Query: 486 HKIGKLRDSKSYCENALKIYGKPNHG--IPSEEIASGLIDIAAIYQSMNEL------EQA 537
                 R +     + L+    P +   +   E  +G   +    + +  L       + 
Sbjct: 143 TNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEV 200

Query: 538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK--------- 588
            +L   A+++        S    ++  +GV++ ++G Y  + +   +A+S          
Sbjct: 201 KELFLAAVRLDPT-----SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 255

Query: 589 -----FRTSGEKKSAL------------FGIALNQMGLACVQRYTINEAADLFEEARTIL 631
                     + + A+            +  +   +G++C+      EA + F EA  + 
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315

Query: 632 EKEYGPYHHDTL---GVYSNLAGTYDAMGRIDDAIE 664
            K  GP          ++S L      +G+ D    
Sbjct: 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 32/202 (15%), Positives = 65/202 (32%), Gaps = 44/202 (21%)

Query: 278 SLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGL 336
           S   + E   +   +V + P   D              LG  + + G+ + ++ C+TA L
Sbjct: 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQ--------CGLGVLFNLSGEYDKAVDCFTAAL 244

Query: 337 EIQRQVLGETDHRVGETCRYVAEAH-------VQSLQFDEAEKICQMALDIHRENTSPAS 389
            ++                                 Q +EA    + AL++      P  
Sbjct: 245 SVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALELQ-----PGY 284

Query: 390 IEEAADRRLMGLICDSKGDYEAALEHYVLA-----SMSMAANGHELDVASIDCSIGDAYL 444
           I   + R  +G+ C + G +  A+EH++ A                   +I  ++  A  
Sbjct: 285 IR--S-RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341

Query: 445 SLARFDEAIFSYHKALTAFKSA 466
            L + D    +  + L+   + 
Sbjct: 342 MLGQSDAYGAADARDLSTLLTM 363

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 70.4 bits (172), Expect = 2e-13
 Identities = 31/230 (13%), Positives = 67/230 (29%), Gaps = 8/230 (3%)

Query: 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498
           I D    L R ++        +  F  +        A + V+ A +Y    +L  +    
Sbjct: 1   ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSF 60

Query: 499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTI 558
             A     K       +E  +  ++    ++S      AV  L  A++I+    GQ    
Sbjct: 61  LKAADYQKKAG---NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-THRGQFRRG 116

Query: 559 AGIEAQMGVMYYM-TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI 617
           A  + ++G +      +Y+ + +  + A   +        +       +           
Sbjct: 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS--NKCFIKCADLKALDGQY 174

Query: 618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILE 667
            EA+D++ +                   +        A      A   L+
Sbjct: 175 IEASDIYSKLIK-SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 57.3 bits (138), Expect = 5e-09
 Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 28/228 (12%)

Query: 404 DSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAF 463
                +E A +  V A                       Y      + A  S+ KA    
Sbjct: 28  SDSYKFEEAADLCVQA--------------------ATIYRLRKELNLAGDSFLKAADYQ 67

Query: 464 KSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLID 523
           K A   N     + +V     +   G   ++    ENA++I+            A+   +
Sbjct: 68  KKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---FRRGANFKFE 122

Query: 524 IAAIYQS-MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTL 582
           +  I ++ +++  +A+     A + Y       +       +   +  + G Y ++ +  
Sbjct: 123 LGEILENDLHDYAKAIDCYELAGEWY-AQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181

Query: 583 KSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI 630
              I     +   + +L    L   GL  +       AA   +E ++ 
Sbjct: 182 SKLIKSSMGNRLSQWSLKDYFLK-KGLCQLAATDAVAAARTLQEGQSE 228

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 33/240 (13%), Positives = 73/240 (30%), Gaps = 14/240 (5%)

Query: 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAE 371
           C+Q    Y +  ++  +   +    + Q++  G  D   G T     +          A 
Sbjct: 40  CVQAATIYRLRKELNLAGDSFLKAADYQKK-AGNEDE-AGNTYVEAYKCFKSGGNSVNAV 97

Query: 372 KICQMALDIHRENTSPASIEEAADR-RLMGLICDS-KGDYEAALEHYVLASMSMAANGHE 429
              + A+ I             A+    +G I ++   DY  A++ Y LA    A +   
Sbjct: 98  DSLENAIQIFTHRGQF---RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154

Query: 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG 489
                      D      ++ EA   Y K + +    +     ++   F++         
Sbjct: 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSLKDYFLKKGLCQLAAT 213

Query: 490 KLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMN--ELEQAVKLLNKALKI 547
               +    +        PN     E  ++ L  +       +  +L +  K  +  +++
Sbjct: 214 DAVAAARTLQEGQSED--PNFADSRE--SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 65.7 bits (161), Expect = 5e-12
 Identities = 41/239 (17%), Positives = 76/239 (31%), Gaps = 42/239 (17%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILC 331
            AA     G+Y  AI  L  +VE      G++           +  ++A +G   + +  
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQ-----GREMRADYK----VISKSFARIGNAYHKLGD 94

Query: 332 YTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391
               +E  ++ L E  HR  +    +          ++  K  +    ++     P   E
Sbjct: 95  LKKTIEYYQKSLTE--HRTADILTKLR-------NAEKELKKAEAEAYVN-----PEKAE 140

Query: 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDE 451
           EA      G    +K D+  A++ Y      +       + A    +   A   L  F E
Sbjct: 141 EARLE---GKEYFTKSDWPNAVKAYTEM---IKRAP---EDARGYSNRAAALAKLMSFPE 191

Query: 452 AIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510
           AI   +KA+        E  P     ++R A     + +   +    + A         
Sbjct: 192 AIADCNKAI--------EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK--DAEV 240

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 34/266 (12%), Positives = 75/266 (28%), Gaps = 71/266 (26%)

Query: 314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVA-----EAHVQSLQFD 368
             G+ +    Q + +I  Y    E+ +                        A  +  +++
Sbjct: 10  AEGNKFYKARQFDEAIEHYNKAWELHKD--------------ITYLNNRAAAEYEKGEYE 55

Query: 369 EAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA----SMSMA 424
            A      A++  RE          AD +++       G+    L            S+ 
Sbjct: 56  TAISTLNDAVEQGREM--------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107

Query: 425 ANG----------HELDVASIDCSI-------------GDAYLSLARFDEAIFSYHKALT 461
            +            E ++   +                G  Y + + +  A+ +Y + + 
Sbjct: 108 EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI- 166

Query: 462 AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGL 521
                  +  P  A  +   A    K+    ++ + C  A++    PN            
Sbjct: 167 -------KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNF-------VRAY 210

Query: 522 IDIAAIYQSMNELEQAVKLLNKALKI 547
           I  A    ++ E   A++ L+ A   
Sbjct: 211 IRKATAQIAVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.0 bits (154), Expect = 4e-11
 Identities = 34/272 (12%), Positives = 75/272 (27%), Gaps = 60/272 (22%)

Query: 399 MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID------CSIGDAYLSLARFDEA 452
            G        ++ A+EHY  A               +        +   A      ++ A
Sbjct: 11  EGNKFYKARQFDEAIEHYNKA-------------WELHKDITYLNNRAAAEYEKGEYETA 57

Query: 453 IFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI 512
           I + + A+        E    + + +  ++  + +IG         +  ++ Y       
Sbjct: 58  ISTLNDAV--------EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY--QKS-- 105

Query: 513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMT 572
              E  +  I        +   E+ +K       +           A      G  Y+  
Sbjct: 106 -LTEHRTADI-----LTKLRNAEKELKKAEAEAYV-------NPEKAEEARLEGKEYFTK 152

Query: 573 GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE 632
            ++ +       A+  +    ++         +    A  +  +  EA     +A   +E
Sbjct: 153 SDWPN-------AVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKA---IE 201

Query: 633 KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
           K+  P        Y   A    A+     A+E
Sbjct: 202 KD--PNFVRA---YIRKATAQIAVKEYASALE 228

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 64.4 bits (157), Expect = 7e-12
 Identities = 24/196 (12%), Positives = 62/196 (31%), Gaps = 31/196 (15%)

Query: 440 GDAYLSLARFDEAIFSYHKALTA--------FKSAKGENHPAVASVFVRLADLYHKIGKL 491
             A +   +  +A+  + + +          + +   +N    + +   LA  Y K    
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70

Query: 492 RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551
             +  + +  L+    PN+          L   A +     + + A+++  K L++    
Sbjct: 71  DKAYLFYKELLQK--APNN-------VDCLEACAEMQVCRGQEKDALRMYEKILQL---- 117

Query: 552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLAC 611
              ++        +G  YY+T          K  +          +     A  + GL+ 
Sbjct: 118 ---EADNLAANIFLGNYYYLTAEQ------EKKKLETDYKKLSSPTK-MQYARYRDGLSK 167

Query: 612 VQRYTINEAADLFEEA 627
           +      +A +  ++ 
Sbjct: 168 LFTTRYEKARNSLQKV 183

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 42/232 (18%)

Query: 313 MQLGDTYAMLGQIENSILCYTAGLEIQ--------RQVLGETDHRVGETCRYVAEAHVQS 364
           +Q        GQ   ++  +   + +            + +      +    +A A+ ++
Sbjct: 8   LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67

Query: 365 LQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMA 424
             +D+A    +  L     N                 +   +G  + AL  Y        
Sbjct: 68  RNYDKAYLFYKELLQKAPNNVDC--------LEACAEMQVCRGQEKDALRMYEKI----- 114

Query: 425 ANGHELDVASID--CSIGDAYLSLA-RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRL 481
               +L+  ++     +G+ Y   A +  + + + +K L         +   +     R 
Sbjct: 115 ---LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL--------SSPTKMQYARYRD 163

Query: 482 ADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE 533
                   +   +++  +  +  +       PS E    L  I  I + +N 
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILRF-------PSTEAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 29/237 (12%), Positives = 60/237 (25%), Gaps = 43/237 (18%)

Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKI-------YGKPNHGIPSEEIASGLIDIAAI 527
               ++      + G+   + SY    + +       Y   N    SE  +    ++A  
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 528 YQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS 587
           Y+     ++A     + L+                     M    G   D+    +  + 
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNN-------VDCLEACAEMQVCRGQEKDALRMYEKIL- 115

Query: 588 KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK--EYGPYHHDTLGV 645
                  +  A    A   +G            A+  ++      K              
Sbjct: 116 -------QLEADNLAANIFLGNYYYLT------AEQEKKKLETDYKKLSSPTKMQY---A 159

Query: 646 YSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEK--RRLAELLKEAGR 700
                 +     R + A   L+ V+           P  E +K   ++  + KE  R
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILR--------FPSTEAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 25/198 (12%), Positives = 56/198 (28%), Gaps = 32/198 (16%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEIP-------VLEDGQDHALAKFAGCMQLGDTYAMLGQ 324
             +     GQ  +A+    +++ +           +   ++        +L   Y     
Sbjct: 10  KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 325 IENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN 384
            + + L Y   L+     +        +     AE  V   Q  +A ++ +  L +  +N
Sbjct: 70  YDKAYLFYKELLQKAPNNV--------DCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

Query: 385 TSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDC--SIGDA 442
            +       A+  L      +    +  LE                           G +
Sbjct: 122 LA-------ANIFLGNYYYLTAEQEKKKLETDYKKL--------SSPTKMQYARYRDGLS 166

Query: 443 YLSLARFDEAIFSYHKAL 460
            L   R+++A  S  K +
Sbjct: 167 KLFTTRYEKARNSLQKVI 184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 9e-12
 Identities = 107/722 (14%), Positives = 197/722 (27%), Gaps = 246/722 (34%)

Query: 17  YEANGGYMGYKD-------SFVQ-------QKSPRSPLSPQSPRSDSLDLAIDGIVE--T 60
           +E       YKD       +FV        Q  P+S LS +          ID I+    
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE---------IDHIIMSKD 59

Query: 61  SIEQLYLNICEMESSEQSPSRASYGSYGEESRIDSELRHLVGDIGEVEITKNVVVEKNED 120
           ++           +              E  RI+ +   L+  I   +   +++     +
Sbjct: 60  AVSGTLRLF---WTLLSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIE 114

Query: 121 SRS---NGGE-FTPKIVSESPDRRAVKKGKKKYSQLNISEASTKSSSQ---------GKS 167
            R    N  + F    VS     R      + Y +L  +    + +           GK+
Sbjct: 115 QRDRLYNDNQVFAKYNVS-----R-----LQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 168 S--NERPPADKRYEKGRRKQNNIF--SARKQRKFASLIAKFQNGAEDPLAAGLGNPALGP 223
               +       Y+   +    IF  + +      +++   Q                  
Sbjct: 165 WVALD---VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK----------------- 204

Query: 224 FLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYN 283
            LL Q     +S  +    ++L            + +  L +++              Y 
Sbjct: 205 -LLYQIDPNWTSRSDHSSNIKLR---------IHSIQAELRRLLKSK----------PYE 244

Query: 284 EAIPVLERSVEIPVLEDGQDHALAK-FA-GCMQLGDTYAMLGQIENSILCYTAGLEIQRQ 341
             +  L       VL + Q+      F   C                IL  T   ++   
Sbjct: 245 NCL--L-------VLLNVQNAKAWNAFNLSC---------------KILLTTRFKQVTDF 280

Query: 342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADR--RLM 399
           +   T      T     + H  +L  DE + +    LD  R    P    E      R +
Sbjct: 281 LSAAT------TTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLP---REVLTTNPRRL 330

Query: 400 GLICDSKGDYEAALEHY-------VLASMSMAANGHELDVASIDCSIGDAYLSLARFDE- 451
            +I +S  D  A  +++       +   +  + N   L+ A         +  L+ F   
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN--VLEPAEYR----KMFDRLSVFPPS 384

Query: 452 --------AIF--------------SYHKALTAFKSAKGENHPAVASVFVRLADLY---- 485
                   ++                 HK     K  K           + +  +Y    
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--------ISIPSIYLELK 436

Query: 486 ---------HK--IGKLRDSKSYCENALK-------IYGKPNHGI--------PSEEIAS 519
                    H+  +      K++  + L         Y   +H I          E +  
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY---SH-IGHHLKNIEHPERMTL 492

Query: 520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMY--YMTGNYSD 577
                  ++     LEQ ++  + A    G      +T+  ++      Y  Y+  N   
Sbjct: 493 ----FRMVFLDFRFLEQKIRHDSTAWNASG---SILNTLQQLK-----FYKPYICDN-DP 539

Query: 578 SYNTLKSAISKF-RTSGE-----KKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL 631
            Y  L +AI  F     E     K + L  IAL              E   +FEEA   +
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALM------------AEDEAIFEEAHKQV 587

Query: 632 EK 633
           ++
Sbjct: 588 QR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 60/438 (13%), Positives = 114/438 (26%), Gaps = 138/438 (31%)

Query: 343 LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEE--------AA 394
            GE  ++  +      +A V +  FD     C+   D+ +   S   I+         + 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDN--FD-----CKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 395 DRRLMGLICDS-------------KGDY----EAALEHYVLASMSMAANGHELDVASIDC 437
             RL   +                + +Y              SM       + D    D 
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK---IGK---- 490
            +   Y +++R  +      +AL   + AK         V +            GK    
Sbjct: 124 QVFAKY-NVSRL-QPYLKLRQALLELRPAKN--------VLI------DGVLGSGKTWVA 167

Query: 491 ---LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
                  K  C+   KI+                +++         LE   KLL +    
Sbjct: 168 LDVCLSYKVQCKMDFKIF---------------WLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 548 YGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGI----- 602
           +       S                 N     +++++ + +   S   ++ L  +     
Sbjct: 213 WTSRSDHSS-----------------NIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQ 254

Query: 603 ---ALNQMGLAC----VQRY-TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD 654
              A N   L+C      R+  + +           L+        D             
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD------------- 301

Query: 655 AMGRIDDAIEILEYVVGMREEKL----GTANPDVEDEKRRLAELLKEAGRVRNRKSRSLV 710
                 +   +L   +  R + L     T NP       R   ++ E   +R+  +    
Sbjct: 302 ------EVKSLLLKYLDCRPQDLPREVLTTNP-------RRLSIIAE--SIRDGLAT-WD 345

Query: 711 TFLDSNSQNLKEDAIEVS 728
            +   N   L    IE S
Sbjct: 346 NWKHVNCDKLTT-IIESS 362

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 41/279 (14%), Positives = 85/279 (30%), Gaps = 42/279 (15%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSIL 330
                   G     I  +E ++   P        A A       LG T A     + +I+
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDP------GDAEA----WQFLGITQAENENEQAAIV 120

Query: 331 CYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI 390
                LE+Q   L        +    +A ++  +    +A +  +  +  + +       
Sbjct: 121 ALQRCLELQPNNL--------KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN 172

Query: 391 EEAADRRL--MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR 448
           ++ +      M          E   E Y+ A    A    ++    +   +G  +     
Sbjct: 173 KKGSPGLTRRMSKSPVDSSVLEGVKELYLEA----AHQNGDMIDPDLQTGLGVLFHLSGE 228

Query: 449 FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508
           F+ AI +++ AL           P   S++ RL        +  ++      AL+I  +P
Sbjct: 229 FNRAIDAFNAAL--------TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QP 278

Query: 509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
                         ++     ++    +AV     AL +
Sbjct: 279 GF-------IRSRYNLGISCINLGAYREAVSNFLTALSL 310

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 40/311 (12%), Positives = 90/311 (28%), Gaps = 58/311 (18%)

Query: 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRL-MGLICDSKGDYEAALEHYVLASMSMA 424
           +F+ A+   +   +   +       E A    +       ++    A+ + Y        
Sbjct: 4   EFERAKAAVESDTEF-WDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFH----T 58

Query: 425 ANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL 484
            N  +    + +   G   L        I     A+           P  A  +  L   
Sbjct: 59  ENPFKDWPGAFE--EGLKRLKEGDLPVTILFMEAAI--------LQDPGDAEAWQFLGIT 108

Query: 485 YHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544
             +    + +    +  L++  +PN+          L+ +A  Y + +  + A + L   
Sbjct: 109 QAENENEQAAIVALQRCLEL--QPNN-------LKALMALAVSYTNTSHQQDACEALKNW 159

Query: 545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSD---SYNTLKSAISKFRTSGEKKSALF- 600
           +K              +         +T   S      + L+     +  +  +   +  
Sbjct: 160 IKQ-------NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212

Query: 601 -------GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY 653
                  G+  +  G      +  N A D F  A T+      P  +    +++ L  T 
Sbjct: 213 PDLQTGLGVLFHLSG-----EF--NRAIDAFNAALTV-----RPEDYS---LWNRLGATL 257

Query: 654 DAMGRIDDAIE 664
               R ++A+E
Sbjct: 258 ANGDRSEEAVE 268

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 45/296 (15%), Positives = 97/296 (32%), Gaps = 53/296 (17%)

Query: 270 HVLAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENS 328
             L            AI  L+R +E+ P      ++  A     M L  +Y      +++
Sbjct: 103 QFLGITQAENENEQAAIVALQRCLELQP------NNLKA----LMALAVSYTNTSHQQDA 152

Query: 329 ILCYTAGLEIQ---RQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENT 385
                  ++     + ++       G T R  +++ V S   +  +++   A   +    
Sbjct: 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRM-SKSPVDSSVLEGVKELYLEAAHQN---- 207

Query: 386 SPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL--DVASIDCSIGDAY 443
               + +   +  +G++    G++  A++ +  A          +  +  S+   +G   
Sbjct: 208 --GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL--------TVRPEDYSLWNRLGATL 257

Query: 444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALK 503
            +  R +EA+ +Y +AL        E  P        L      +G  R++ S    AL 
Sbjct: 258 ANGDRSEEAVEAYTRAL--------EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309

Query: 504 IYGKPNHGIPSEEIASGLID-------IAAIYQSMNELEQAVK-----LLNKALKI 547
           +  +       +     +         IA       EL QA       +L +A  +
Sbjct: 310 L--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNL 363

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 55/354 (15%), Positives = 105/354 (29%), Gaps = 64/354 (18%)

Query: 322 LGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH 381
             + E +     +  E   ++  E +           +     +    +EK        H
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEK----GYYFH 57

Query: 382 RENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID--CSI 439
            EN        A +    GL    +GD    +     A           D    +    +
Sbjct: 58  TEN-PFKDWPGAFEE---GLKRLKEGDLPVTILFMEAAI--------LQDPGDAEAWQFL 105

Query: 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE 499
           G           AI +  + L        E  P      + LA  Y      +D+    +
Sbjct: 106 GITQAENENEQAAIVALQRCL--------ELQPNNLKALMALAVSYTNTSHQQDACEALK 157

Query: 500 NALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIA 559
           N +K    P +    + +         + + M++      +L    ++Y +   Q   + 
Sbjct: 158 NWIKQ--NPKY----KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211

Query: 560 GIEAQ--MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL-----FGIALNQMG--LA 610
             + Q  +GV+++++G ++        AI  F        AL          N++G  LA
Sbjct: 212 DPDLQTGLGVLFHLSGEFNR-------AIDAFNA------ALTVRPEDYSLWNRLGATLA 258

Query: 611 CVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
              R    EA + +  A  I      P          NL  +   +G   +A+ 
Sbjct: 259 NGDRS--EEAVEAYTRALEI-----QPGFIR---SRYNLGISCINLGAYREAVS 302

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 65.6 bits (159), Expect = 3e-11
 Identities = 29/245 (11%), Positives = 77/245 (31%), Gaps = 33/245 (13%)

Query: 399 MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK 458
           +  I   +G+ E A+  Y        A     + A+   ++        +  EA+  Y +
Sbjct: 15  LANIKREQGNIEEAVRLY------RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68

Query: 459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA 518
           A+           P  A  +  + +   ++  ++ +      A++I   P         A
Sbjct: 69  AIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAF-------A 111

Query: 519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS-- 576
               ++A+I++    + +A+     ALK+       +         +     +  +++  
Sbjct: 112 DAHSNLASIHKDSGNIPEAIASYRTALKL-------KPDFPDAYCNLAHCLQIVCDWTDY 164

Query: 577 -DSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEY 635
            +    L S ++         S     ++        ++       +L  +   +L K  
Sbjct: 165 DERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPP 224

Query: 636 GPYHH 640
             +  
Sbjct: 225 YEHPK 229

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 38/194 (19%)

Query: 507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG 566
            P H       A  L ++A I +    +E+AV+L  KAL++           A   + + 
Sbjct: 5   CPTH-------ADSLNNLANIKREQGNIEEAVRLYRKALEV-------FPEFAAAHSNLA 50

Query: 567 VMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEE 626
            +    G   +       A+  ++ +       F  A + MG    +   +  A   +  
Sbjct: 51  SVLQQQGKLQE-------ALMHYKEAIRISPT-FADAYSNMGNTLKEMQDVQGALQCYTR 102

Query: 627 ARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVED 686
           A  I        +      +SNLA  +   G I +AI      + +         PD  D
Sbjct: 103 AIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--------KPDFPD 146

Query: 687 EKRRLAELLKEAGR 700
               LA  L+    
Sbjct: 147 AYCNLAHCLQIVCD 160

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 37/279 (13%), Positives = 78/279 (27%), Gaps = 33/279 (11%)

Query: 269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENS 328
           L+ LA I    G   EA+ +  +++E+       + A A       L       G+++ +
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEV-----FPEFAAAHS----NLASVLQQQGKLQEA 62

Query: 329 ILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA 388
           ++ Y   + I             +    +     +      A +    A+ I+       
Sbjct: 63  LMHYKEAIRISP------TF--ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF---- 110

Query: 389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR 448
               A     +  I    G+   A+  Y        A   + D     C++      +  
Sbjct: 111 ----ADAHSNLASIHKDSGNIPEAIASY------RTALKLKPDFPDAYCNLAHCLQIVCD 160

Query: 449 FDEAIFSYHKALTAF-KSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507
           + +      K ++      +    P+V      L  L H   K    +       KI   
Sbjct: 161 WTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVL 220

Query: 508 PNHGIPSEEIASGLIDIAAI-YQSMNELEQAVKLLNKAL 545
                   +          + Y S +        L +++
Sbjct: 221 HKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSI 259

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 39/298 (13%), Positives = 93/298 (31%), Gaps = 55/298 (18%)

Query: 270 HVLAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENS 328
             L        +   AI  L  +  + P                  L  ++        +
Sbjct: 59  RSLGLTQAENEKDGLAIIALNHARMLDP------KDIAV----HAALAVSHTNEHNANAA 108

Query: 329 ILCYTAGLEIQRQ------VLGETDHRVGETCRYVAEAHVQSL-QFDEAEKICQMALDIH 381
           +    A L  Q Q      V  + D  + +      +    +  ++ E   +   AL+++
Sbjct: 109 LASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168

Query: 382 RENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL----DVASIDC 437
             +   A +  +     +G++ +   +Y++A  +   A          +    D A +  
Sbjct: 169 PND---AQLHAS-----LGVLYNLSNNYDSAAANLRRA----------VELRPDDAQLWN 210

Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
            +G    +  R  EA+ +Y++AL        + +P    V   +A  Y  + +   +   
Sbjct: 211 KLGATLANGNRPQEALDAYNRAL--------DINPGYVRVMYNMAVSYSNMSQYDLAAKQ 262

Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIA-----AIYQSMNELEQAVKLLNKALKIYGK 550
              A+ +  +     P+ E +             +   MN  +       + ++ + K
Sbjct: 263 LVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 45/285 (15%), Positives = 84/285 (29%), Gaps = 69/285 (24%)

Query: 399 MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID--CSIGDAYLSLARFDEAIFSY 456
            GL      +   A   +            +      +   S+G       +   AI + 
Sbjct: 27  EGLSMLKLANLAEAALAFEAV--------CQAAPEREEAWRSLGLTQAENEKDGLAIIAL 78

Query: 457 HKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH------ 510
           + A            P   +V   LA  +        + +     L    +P +      
Sbjct: 79  NHAR--------MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSV 128

Query: 511 --GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ--MG 566
                 +     +      + + NE  +   LL+ AL++              +    +G
Sbjct: 129 NLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA---------QLHASLG 179

Query: 567 VMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL-----FGIALNQMG--LACVQRYTINE 619
           V+Y ++ NY         A +  R       A+          N++G  LA   R    E
Sbjct: 180 VLYNLSNNYDS-------AAANLRR------AVELRPDDAQLWNKLGATLANGNRP--QE 224

Query: 620 AADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
           A D +  A  +   +  P +     V  N+A +Y  M + D A +
Sbjct: 225 ALDAYNRA--L---DINPGYVR---VMYNMAVSYSNMSQYDLAAK 261

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 50/373 (13%), Positives = 102/373 (27%), Gaps = 68/373 (18%)

Query: 280 GQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQ 339
           G   +           P +   ++         M+ G +   L  +  + L + A  +  
Sbjct: 1   GHMLQNNTDYPFEANNPYM-YHENP--------MEEGLSMLKLANLAEAALAFEAVCQAA 51

Query: 340 RQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRL- 398
                  +    E  R +     ++ +   A      A  +  ++               
Sbjct: 52  ------PER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---------IAVHAA 94

Query: 399 MGLICDSKGDYEAALEHYVLA---------SMSMAANGHELDVASIDCSIGDAYLSLARF 449
           + +   ++ +  AAL                 S+              S    + +   +
Sbjct: 95  LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154

Query: 450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN 509
            E     H AL        E +P  A +   L  LY+       + +    A+++  +P+
Sbjct: 155 RECRTLLHAAL--------EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPD 204

Query: 510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ--MGV 567
                   A     + A   + N  ++A+   N+AL I    PG       +     M V
Sbjct: 205 D-------AQLWNKLGATLANGNRPQEALDAYNRALDIN---PGY------VRVMYNMAV 248

Query: 568 MYYMTGNYSDSYNTLKSAIS----KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADL 623
            Y     Y  +   L  AI         +GE          +   +        +     
Sbjct: 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308

Query: 624 FEEARTILEKEYG 636
           + +      KE+G
Sbjct: 309 YAQNVEPFAKEFG 321

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 47/209 (22%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSIL 330
                 +  +Y E   +L  ++E+ P      + A    +    LG  Y +    +++  
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNP------NDAQLHAS----LGVLYNLSNNYDSAAA 193

Query: 331 CYTAGLEIQRQVLGETDHRVGETCRYVAEAH-------VQSLQFDEAEKICQMALDIHRE 383
                +E++                  A+             +  EA      ALDI+  
Sbjct: 194 NLRRAVELRPDD---------------AQLWNKLGATLANGNRPQEALDAYNRALDINPG 238

Query: 384 NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLA------SMSMAANGHELDVASIDC 437
                          M +   +   Y+ A +  V A        +           S+  
Sbjct: 239 YV------RV--MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD 290

Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSA 466
                   + R D    +Y + +  F   
Sbjct: 291 FFRMLLNVMNRPDLVELTYAQNVEPFAKE 319

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 64.1 bits (156), Expect = 9e-11
 Identities = 17/141 (12%), Positives = 35/141 (24%), Gaps = 23/141 (16%)

Query: 407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA 466
            D    L     A   +     +         + DA L +        +  + L      
Sbjct: 3   ADGPRELLQLRAA---VRHRPQDFVAW---LMLADAELGMGDTTAGEMAVQRGL------ 50

Query: 467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAA 526
               HP       RL  +     +  ++    + A      P H           + +  
Sbjct: 51  --ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA--APEH-------PGIALWLGH 99

Query: 527 IYQSMNELEQAVKLLNKALKI 547
             +   + E A     +A ++
Sbjct: 100 ALEDAGQAEAAAAAYTRAHQL 120

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 30/196 (15%), Positives = 48/196 (24%), Gaps = 37/196 (18%)

Query: 280 GQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338
                 +  L  +V   P         +A       L D    +G      +    GL +
Sbjct: 3   ADGPRELLQLRAAVRHRP------QDFVAWLM----LADAELGMGDTTAGEMAVQRGLAL 52

Query: 339 QRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRL 398
                        E    +        +  EA  + Q A D   E+              
Sbjct: 53  --------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH--------PGIALW 96

Query: 399 MGLICDSKGDYEAALEHYVLASMSMAANGHEL--DVASIDCSIGDAYLSLARFDEAIFSY 456
           +G   +  G  EAA   Y  A        H+L  +   I   + +    L  +       
Sbjct: 97  LGHALEDAGQAEAAAAAYTRA--------HQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148

Query: 457 HKALTAFKSAKGENHP 472
            +   A     G   P
Sbjct: 149 AQVRAAVAQGVGAVEP 164

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 22/194 (11%), Positives = 50/194 (25%), Gaps = 32/194 (16%)

Query: 489 GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548
                       A++   +P             + +A     M +       + + L ++
Sbjct: 3   ADGPRELLQLRAAVRH--RPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLALH 53

Query: 549 GKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMG 608
              PG         A++G + +    ++++   L+ A                     +G
Sbjct: 54  ---PGH----PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG--------IALWLG 98

Query: 609 LACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEY 668
            A         AA  +  A  +L     P       + + L      +        +   
Sbjct: 99  HALEDAGQAEAAAAAYTRAHQLL-----PEEPY---ITAQLLNWRRRLCDWRALDVLSAQ 150

Query: 669 VVGMREEKLGTANP 682
           V     + +G   P
Sbjct: 151 VRAAVAQGVGAVEP 164

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 27/234 (11%), Positives = 59/234 (25%), Gaps = 35/234 (14%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
           +  + L   + A++        +P     +   +LA     +G        ++R + +  
Sbjct: 4   DGPRELLQLRAAVRH-------RPQD--FVAWLMLADAELGMGDTTAGEMAVQRGLAL-- 52

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357
                 H  A      +LG       +   + +      +         +H       ++
Sbjct: 53  ---HPGHPEA----VARLGRVRWTQQRHAEAAVLLQQASDAAP------EHP--GIALWL 97

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGL--ICDSKGDYEAALEH 415
             A   + Q + A      A  +  E            + L     +CD     +     
Sbjct: 98  GHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCD-WRALDVLSAQ 150

Query: 416 YVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE 469
              A              S D S  +         +AI +  + L   +     
Sbjct: 151 VRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRVRSKG 204

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 40/225 (17%)

Query: 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE 499
                    +++A  ++ KA+        E +   A  ++  A+L   + +L  + ++ +
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAI--------EENKEDAIPYINFANLLSSVNELERALAFYD 81

Query: 500 NALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIA 559
            AL++    +        A+       +Y      ++A  +  KAL+             
Sbjct: 82  KALEL--DSSA-------ATAYYGAGNVYVVKEMYKEAKDMFEKALRA-------GMENG 125

Query: 560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINE 619
            +   +G +                A+   + + E        A  Q G+       ++E
Sbjct: 126 DLFYMLGTVLVKLEQPKL-------ALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177

Query: 620 AADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
           A   F         E  P H D    + N   TY      + A+E
Sbjct: 178 ALSQFAAV--T---EQDPGHAD---AFYNAGVTYAYKENREKALE 214

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 35/279 (12%), Positives = 81/279 (29%), Gaps = 69/279 (24%)

Query: 278 SLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLE 337
           S   ++ +  ++ R   +         ++             +  G  E +   +T  +E
Sbjct: 4   SHHHHHHSSGLVPRGSHM--------ASMTGGQ----QMGRGSEFGDYEKAAEAFTKAIE 51

Query: 338 IQRQVLGETDHRVGETCRYVAEAHV------QSL-QFDEAEKICQMALDIHRENTSPASI 390
                    +          A  ++       S+ + + A      AL++   + + A  
Sbjct: 52  EN------KED---------AIPYINFANLLSSVNELERALAFYDKALEL-DSSAATAYY 95

Query: 391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL--DVASIDCSIGDAYLSLAR 448
                    G +   K  Y+ A + +  A             +   +   +G   + L +
Sbjct: 96  G-------AGNVYVVKEMYKEAKDMFEKA--------LRAGMENGDLFYMLGTVLVKLEQ 140

Query: 449 FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508
              A+    +A+        E +        +        G L ++ S      +    P
Sbjct: 141 PKLALPYLQRAV--------ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DP 190

Query: 509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
            H       A    +    Y      E+A+++L+KA+ I
Sbjct: 191 GH-------ADAFYNAGVTYAYKENREKALEMLDKAIDI 222

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 36/224 (16%), Positives = 68/224 (30%), Gaps = 42/224 (18%)

Query: 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA 425
            +++A +    A++ ++E+  P              +  S  + E AL  Y  A      
Sbjct: 38  DYEKAAEAFTKAIEENKEDAIPYIN--------FANLLSSVNELERALAFYDKAL----- 84

Query: 426 NGHEL--DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLAD 483
              EL    A+     G+ Y+    + EA   + KAL                +F  L  
Sbjct: 85  ---ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL-RAG-------MENGDLFYMLGT 133

Query: 484 LYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNK 543
           +  K+ + + +  Y + A+++    N                    +   L++A+     
Sbjct: 134 VLVKLEQPKLALPYLQRAVEL--NEND-------TEARFQFGMCLANEGMLDEALSQFAA 184

Query: 544 ALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS 587
             +            A      GV Y    N   +   L  AI 
Sbjct: 185 VTEQ-------DPGHADAFYNAGVTYAYKENREKALEMLDKAID 221

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 35/281 (12%), Positives = 71/281 (25%), Gaps = 73/281 (25%)

Query: 240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI-PVL 298
             +  L  R      +                        G Y +A     +++E     
Sbjct: 9   HHSSGLVPRGSHMASMTGG------------QQMGRGSEFGDYEKAAEAFTKAIEENK-- 54

Query: 299 EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVA 358
               + A+          +  + + ++E ++  Y   LE+       +           A
Sbjct: 55  ----EDAIPYI----NFANLLSSVNELERALAFYDKALELD------SSA---------A 91

Query: 359 EAHV------QSL-QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEA 411
            A+            + EA+ + + AL    EN       +      +G +       + 
Sbjct: 92  TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG------DLFYM--LGTVLVKLEQPKL 143

Query: 412 ALEHY--VLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE 469
           AL +    +                     G    +    DEA+  +            E
Sbjct: 144 ALPYLQRAVELNENDTEAR--------FQFGMCLANEGMLDEALSQFAAVT--------E 187

Query: 470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510
             P  A  F      Y        +    + A+ I  +P+H
Sbjct: 188 QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDH 226

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 60.9 bits (147), Expect = 3e-10
 Identities = 26/268 (9%), Positives = 74/268 (27%), Gaps = 14/268 (5%)

Query: 318 TYAMLGQIEN----------SILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQF 367
             + + +IE+            +     + I           +    ++  +  +   Q 
Sbjct: 30  HQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQK 89

Query: 368 DEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG 427
              E   ++  ++ +E   P   +    +  +      K DYE  +              
Sbjct: 90  RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149

Query: 428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK 487
                  I+ +I + Y       + I  + + L   ++   +N      V    A   + 
Sbjct: 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA-LHDNEEFDVKVRYNHAKALYL 208

Query: 488 IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
             +  +S      A++I  + N       I           + +   E  ++   K    
Sbjct: 209 DSRYEESLYQVNKAIEISCRINSMA---LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265

Query: 548 YGKTPGQQSTIAGIEAQMGVMYYMTGNY 575
           +       +    +  ++  + +   ++
Sbjct: 266 FFDILEMHAYKEALVNKISRLEHHHHHH 293

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 24/152 (15%), Positives = 40/152 (26%), Gaps = 6/152 (3%)

Query: 482 ADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLL 541
           A    K           +  L           +  I      IA IY     L++ + L 
Sbjct: 122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI---ENAIANIYAENGYLKKGIDLF 178

Query: 542 NKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG 601
            + LK        +     +        Y+   Y +S   +  AI           AL G
Sbjct: 179 EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSMALIG 236

Query: 602 IALNQMGLACVQRYTINEAA-DLFEEARTILE 632
               Q G    +         D +++A    +
Sbjct: 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 4/163 (2%)

Query: 505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ 564
           +          E      D   +       ++    +   LK     P +       +  
Sbjct: 62  HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EFQQFLQWQYY 120

Query: 565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLF 624
           +        +Y      LK  +++  T  +    L     N +     +   + +  DLF
Sbjct: 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL--YIENAIANIYAENGYLKKGIDLF 178

Query: 625 EEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILE 667
           E+    LE          + V  N A       R ++++  + 
Sbjct: 179 EQILKQLEA-LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 37/226 (16%), Positives = 69/226 (30%), Gaps = 74/226 (32%)

Query: 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498
            G ++    R+ +A+    +          +       V + L   Y K G +       
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVY--------DADAFDVDVALHLGIAYVKTGAVDRGTELL 65

Query: 499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTI 558
           E +L     P++             +   Y  + + + AV LL K  +     P      
Sbjct: 66  ERSLAD--APDN-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEA---NP------ 107

Query: 559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTIN 618
                             +    L                  G+AL+ +G     R+  +
Sbjct: 108 ---------------INFNVRFRL------------------GVALDNLG-----RF--D 127

Query: 619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
           EA D F+ A  +      P       V+  +A +Y+ MGR ++A+ 
Sbjct: 128 EAIDSFKIALGL-----RPNEGK---VHRAIAFSYEQMGRHEEALP 165

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.1 bits (126), Expect = 6e-08
 Identities = 20/151 (13%), Positives = 42/151 (27%), Gaps = 27/151 (17%)

Query: 399 MGLICDSKGDYEAALEHY--VLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSY 456
            G+     G Y  A+     V  + +   +            +G AY+     D      
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVA--------LHLGIAYVKTGAVDRGTELL 65

Query: 457 HKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEE 516
            ++L A         P    V   L   Y ++ K   +        +    P +      
Sbjct: 66  ERSL-ADA-------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPIN------ 109

Query: 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
             +    +     ++   ++A+     AL +
Sbjct: 110 -FNVRFRLGVALDNLGRFDEAIDSFKIALGL 139

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 35/184 (19%)

Query: 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA 425
           ++ +A  + +   D    +       + A    +G+     G  +   E    +      
Sbjct: 23  RYSQAVMLLEQVYDADAFDV------DVALH--LGIAYVKTGAVDRGTELLERSL----- 69

Query: 426 NGHEL--DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLAD 483
                  D   +   +G  Y+ + ++D A+    K          E +P   +V  RL  
Sbjct: 70  ---ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA--------EANPINFNVRFRLGV 118

Query: 484 LYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNK 543
               +G+  ++    + AL +  +PN              IA  Y+ M   E+A+    K
Sbjct: 119 ALDNLGRFDEAIDSFKIALGL--RPNE-------GKVHRAIAFSYEQMGRHEEALPHFKK 169

Query: 544 ALKI 547
           A ++
Sbjct: 170 ANEL 173

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 51/199 (25%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSIL 330
               H   G+Y++A+ +LE+  +                   + LG  Y   G ++    
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADA------FDVDV----ALHLGIAYVKTGAVDRGTE 63

Query: 331 CYTAGLEIQRQVLGETDHRVGETCRYVAEAH------VQSL-QFDEAEKICQMALDIHRE 383
                L          D+          +           + ++D A  +     + +  
Sbjct: 64  LLERSLADAP------DN---------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108

Query: 384 NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL--DVASIDCSIGD 441
           N           R  +G+  D+ G ++ A++ + +A          L  +   +  +I  
Sbjct: 109 NF------NVRFR--LGVALDNLGRFDEAIDSFKIAL--------GLRPNEGKVHRAIAF 152

Query: 442 AYLSLARFDEAIFSYHKAL 460
           +Y  + R +EA+  + KA 
Sbjct: 153 SYEQMGRHEEALPHFKKAN 171

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 27/225 (12%), Positives = 57/225 (25%), Gaps = 38/225 (16%)

Query: 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE 499
           G  YL     ++A     KAL        E  P+ A     LA ++    + + +     
Sbjct: 44  GLGYLQRGNTEQAKVPLRKAL--------EIDPSSADAHAALAVVFQTEMEPKLADEEYR 95

Query: 500 NALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIA 559
            AL       +       A  L +           E+A + L +A +            +
Sbjct: 96  KALAS--DSRN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY-----PERS 141

Query: 560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINE 619
            +   +G++       + +    + ++   R               +M     +      
Sbjct: 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS--------VALEMADLLYKEREYVP 193

Query: 620 AADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
           A   ++          G  +  +                 D A  
Sbjct: 194 ARQYYDLFAQG-----GGQNARS---LLLGIRLAKVFEDRDTAAS 230

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 38/259 (14%), Positives = 78/259 (30%), Gaps = 55/259 (21%)

Query: 297 VLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ------VLGETDHRV 350
             +   +   A      QLG  Y   G  E + +     LEI          L       
Sbjct: 29  TDKGRDEARDAYI----QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTE 84

Query: 351 GETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRL-MGLICDSKGDY 409
            E                 A++  + AL     N         A      G     +  Y
Sbjct: 85  ME--------------PKLADEEYRKALASDSRN---------ARVLNNYGGFLYEQKRY 121

Query: 410 EAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE 469
           E A +  + A    + +    + + +  ++G   L + +  +A   + K+L         
Sbjct: 122 EEAYQRLLEA----SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL------- 170

Query: 470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ 529
            +    SV + +ADL +K  +   ++ Y +   +      +       A  L+    + +
Sbjct: 171 -NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQN-------ARSLLLGIRLAK 220

Query: 530 SMNELEQAVKLLNKALKIY 548
              + + A     +  ++Y
Sbjct: 221 VFEDRDTAASYGLQLKRLY 239

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 15/148 (10%), Positives = 38/148 (25%), Gaps = 23/148 (15%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILC 331
                    +Y EA   L  + +  +     + +         LG     + +   +   
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTL---YPERSRV----FENLGLVSLQMKKPAQAKEY 163

Query: 332 YTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391
           +   L + R                +A+   +  ++  A +   +      +N       
Sbjct: 164 FEKSLRLNR--------NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN------- 208

Query: 392 EAADRRLMGLICDSKGDYEAALEHYVLA 419
            A    L   +     D + A  + +  
Sbjct: 209 -ARSLLLGIRLAKVFEDRDTAASYGLQL 235

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 43/434 (9%), Positives = 111/434 (25%), Gaps = 73/434 (16%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
             ++ALE  ++ +           + +QV+ +        +L      +PVL ++  +  
Sbjct: 471 GGKQALETVQQLLPVLC--QAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL-- 526

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357
                D  +A        G     L  ++  +        +        D  V       
Sbjct: 527 ---TPDQVVA----IASNGGGKQALETVQRLLPVLCQAHGLT------PDQVVAIASNGG 573

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417
            +  ++         +   A  +     +   +   A          +    +  L    
Sbjct: 574 GKQALE--TVQRLLPVLCQAHGL-----TQVQVVAIASN---IGGKQALETVQRLLPVL- 622

Query: 418 LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASV 477
                  A+G          S      +L      +    +A            P     
Sbjct: 623 -----CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGL--------TPDQVVA 669

Query: 478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537
                     +  ++        A  +                +       Q++  +++ 
Sbjct: 670 IASNGGGKQALETVQRLLPVLCQAHGL--TQEQ-------VVAIASNNGGKQALETVQRL 720

Query: 538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS 597
           + +L +A  +   TP Q      + A         G    +  T++  +     +     
Sbjct: 721 LPVLCQAHGL---TPDQ------VVA-----IASNGGGKQALETVQRLLPVLCQAHGLTP 766

Query: 598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG 657
           A      + +G          +A +  +    +L +++G      +   ++  G   A+ 
Sbjct: 767 AQVVAIASNIGGK--------QALETVQRLLPVLCQDHG-LTLAQVVAIASNIGGKQALE 817

Query: 658 RIDDAIEILEYVVG 671
            +   + +L    G
Sbjct: 818 TVQRLLPVLCQAHG 831

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.2 bits (135), Expect = 3e-08
 Identities = 51/437 (11%), Positives = 108/437 (24%), Gaps = 88/437 (20%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
             ++ALE  +R +          P   QV+ +        +L      +PVL ++  +P 
Sbjct: 200 GGKQALETVQRLLPVLCQAHGLTP--AQVVAIASHDGGKQALETMQRLLPVLCQAHGLP- 256

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357
                D  +A              L  ++  +        +                   
Sbjct: 257 ----PDQVVA----IASNIGGKQALETVQRLLPVLCQAHGLTPD---------------Q 293

Query: 358 AEAH------VQSL-QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYE 410
             A        Q+L        +   A  +     +P  +   A          +    +
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGL-----TPDQVVAIASH---DGGKQALETVQ 345

Query: 411 AALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN 470
             L           A+G   D      S G    +L      +    +A         + 
Sbjct: 346 RLLPVLC------QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH----GLTPDQ 395

Query: 471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS 530
             A+AS   + A     +  ++        A  +   P+           +       Q+
Sbjct: 396 VVAIASNGGKQA-----LETVQRLLPVLCQAHGL--TPDQ-------VVAIASHDGGKQA 441

Query: 531 MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590
           +  +++ + +L +   +   TP Q   I    A                  L  A     
Sbjct: 442 LETVQRLLPVLCQTHGL---TPAQVVAI----ASHDGGKQALETVQQLLPVLCQAHGLTP 494

Query: 591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA 650
                       A+           T+     +  +A  +          D +   ++  
Sbjct: 495 DQVV--------AIASNIGGKQALATVQRLLPVLCQAHGL--------TPDQVVAIASNG 538

Query: 651 GTYDAMGRIDDAIEILE 667
           G   A+  +   + +L 
Sbjct: 539 GGKQALETVQRLLPVLC 555

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 37/406 (9%), Positives = 94/406 (23%), Gaps = 76/406 (18%)

Query: 264 EQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLG 323
            QV+ +        +L      +PVL ++  +          +A              L 
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGL-----TPAQVVA----IASHDGGKQALE 240

Query: 324 QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE 383
            ++  +        +    +                             +   A  +   
Sbjct: 241 TMQRLLPVLCQAHGLPPDQV--------VAIASNIGGKQALETVQRLLPVLCQAHGL--- 289

Query: 384 NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID--CSIGD 441
             +P  +   A     G    +    +  L     A        H L    +    S   
Sbjct: 290 --TPDQVVAIASH---GGGKQALETVQRLLPVLCQA--------HGLTPDQVVAIASHDG 336

Query: 442 AYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENA 501
              +L      +    +A            P               +  ++        A
Sbjct: 337 GKQALETVQRLLPVLCQAH--------GLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 388

Query: 502 LKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGI 561
             +   P+           +       Q++  +++ + +L +A  +   TP Q       
Sbjct: 389 HGL--TPDQ-------VVAIASNGGK-QALETVQRLLPVLCQAHGL---TPDQVVA---- 431

Query: 562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAA 621
                           +  T++  +     +     A   +A+           T+ +  
Sbjct: 432 -------IASHDGGKQALETVQRLLPVLCQTHGLTPA-QVVAIASHDGGKQALETVQQLL 483

Query: 622 DLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILE 667
            +  +A  +          D +   ++  G   A+  +   + +L 
Sbjct: 484 PVLCQAHGL--------TPDQVVAIASNIGGKQALATVQRLLPVLC 521

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 4e-07
 Identities = 49/444 (11%), Positives = 106/444 (23%), Gaps = 90/444 (20%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
             ++ALE  +R +          P  +QV+ +        +L      +PVL ++     
Sbjct: 268 GGKQALETVQRLLPVLCQAHGLTP--DQVVAIASHGGGKQALETVQRLLPVLCQAHG--- 322

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI---QRQVLGETDHRVGETC 354
           L   Q  A+A              L  ++  +        +   Q   +           
Sbjct: 323 LTPDQVVAIA------SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG------ 370

Query: 355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALE 414
                             +   A  +     +P  +   A       +       +  L 
Sbjct: 371 -----GKQALETVQRLLPVLCQAHGL-----TPDQVVAIASNGGKQAL----ETVQRLLP 416

Query: 415 HYVLASMSMAANGHELDVASID--CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP 472
               A        H L    +    S      +L      +    +             P
Sbjct: 417 VLCQA--------HGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTH--------GLTP 460

Query: 473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMN 532
           A              +  ++        A  +         + +    +       Q++ 
Sbjct: 461 AQVVAIASHDGGKQALETVQQLLPVLCQAHGL---------TPDQVVAIASNIGGKQALA 511

Query: 533 ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS 592
            +++ + +L +A  +   TP Q   IA      G               L  A       
Sbjct: 512 TVQRLLPVLCQAHGL---TPDQVVAIA----SNGGGKQALETVQRLLPVLCQAH------ 558

Query: 593 GEKKSAL---FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNL 649
                 L     +A+   G       T+     +  +A  +            +   ++ 
Sbjct: 559 -----GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL--------TQVQVVAIASN 605

Query: 650 AGTYDAMGRIDDAIEILEYVVGMR 673
            G   A+  +   + +L    G+ 
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLT 629

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 57.4 bits (138), Expect = 5e-09
 Identities = 39/311 (12%), Positives = 78/311 (25%), Gaps = 61/311 (19%)

Query: 375 QMALDIHRENTSPASIEEAADRR-LMGLICDSKGDYEAALEHYVLASMSMAANGHELDVA 433
           Q  ++   +   P+S E   +R   +     ++  Y   L+    +S             
Sbjct: 16  QQCIN-EAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQ-------- 66

Query: 434 SIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH-PAVASVFVRLADLYHKIGKLR 492
                   A    A +  +       +         +      +  +  A +Y       
Sbjct: 67  --------AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN-- 116

Query: 493 DSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP 552
                 + AL+   + +                 I   ++ L+ A K L K         
Sbjct: 117 -----PDAALRTLHQGDSLECMAMTVQ-------ILLKLDRLDLARKELKKMQDQDEDAT 164

Query: 553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACV 612
             Q   A +    G          D+Y   +    K   +           LN      +
Sbjct: 165 LTQLATAWVSLAAG-----GEKLQDAYYIFQEMADKCSPTLL--------LLNGQAACHM 211

Query: 613 QRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM 672
            +     A  + +EA      +    H +TL    NL      +G+  +           
Sbjct: 212 AQGRWEAAEGVLQEA-----LDKDSGHPETL---INLVVLSQHLGKPPEVTNRY------ 257

Query: 673 REEKLGTANPD 683
              +L  A+  
Sbjct: 258 -LSQLKDAHRS 267

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 40/294 (13%), Positives = 88/294 (29%), Gaps = 57/294 (19%)

Query: 407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA 466
           G Y+  +        S      E DV      +  AYL+  ++   +             
Sbjct: 13  GSYQQCINEAQRVKPSSPERDVERDVF-----LYRAYLAQRKYGVVL----------DEI 57

Query: 467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAA 526
           K  + P + +V    A+      +     +  +  +       +        + L+  A+
Sbjct: 58  KPSSAPELQAVR-MFAEYLASHSRRDAIVAELDREMSRSVDVTN-------TTFLLMAAS 109

Query: 527 IYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAI 586
           IY      + A++ L++   +               A    +         +   LK   
Sbjct: 110 IYFYDQNPDAALRTLHQGDSLE------------CMAMTVQILLKLDRLDLARKELKKMQ 157

Query: 587 SKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY 646
            +     ++ + L  +A   + LA      + +A  +F+E               TL + 
Sbjct: 158 DQ-----DEDATLTQLATAWVSLA-AGGEKLQDAYYIFQEMADK--------CSPTLLLL 203

Query: 647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700
           +  A  + A GR + A  +L+  +          +    +    L  L +  G+
Sbjct: 204 NGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGK 249

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 55.2 bits (134), Expect = 9e-09
 Identities = 38/235 (16%), Positives = 77/235 (32%), Gaps = 48/235 (20%)

Query: 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498
           +G    +L R+D A+  + +AL        + +P        LA    K+G +  +    
Sbjct: 11  LGVQLYALGRYDAALTLFERAL--------KENPQDPEALYWLARTQLKLGLVNPALENG 62

Query: 499 ENALKIYGKPNH-------GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT 551
           +  +     P +             +           +    LEQA+ +L  A ++    
Sbjct: 63  KTLVAR--TPRYLGGYMVLSEAYVALYRQA---EDRERGKGYLEQALSVLKDAERV---- 113

Query: 552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL--FGIALNQMGL 609
                  A +  Q G++Y + G    +  +LK A+           AL       + +  
Sbjct: 114 ---NPRYAPLHLQRGLVYALLGERDKAEASLKQAL-----------ALEDTPEIRSALAE 159

Query: 610 ACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
             +    ++EA   + +A  +   E  P   D   +    A      G+ ++A  
Sbjct: 160 LYLSMGRLDEALAQYAKA--L---EQAPKDLD---LRVRYASALLLKGKAEEAAR 206

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 47/246 (19%), Positives = 84/246 (34%), Gaps = 47/246 (19%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSIL 330
           L     +LG+Y+ A+ + ER+++  P          A       L  T   LG +  ++ 
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENP------QDPEA----LYWLARTQLKLGLVNPALE 60

Query: 331 CYTAGLEIQ------RQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN 384
                +           VL E         R   +        ++A  + + A  ++   
Sbjct: 61  NGKTLVARTPRYLGGYMVLSEA---YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117

Query: 385 TSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYL 444
                      +   GL+    G+ + A      A   +A      D   I  ++ + YL
Sbjct: 118 A------PLHLQ--RGLVYALLGERDKAEASLKQA---LALE----DTPEIRSALAELYL 162

Query: 445 SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDS-KSYCENALK 503
           S+ R DEA+  Y KAL        E  P    + VR A      GK  ++ ++    AL+
Sbjct: 163 SMGRLDEALAQYAKAL--------EQAPKDLDLRVRYASALLLKGKAEEAARAA---ALE 211

Query: 504 IYGKPN 509
            +   +
Sbjct: 212 HHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.8 bits (120), Expect = 6e-07
 Identities = 38/252 (15%), Positives = 68/252 (26%), Gaps = 65/252 (25%)

Query: 314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAH------VQSL-Q 366
           +LG     LG+ + ++  +   L+                     EA          L  
Sbjct: 10  RLGVQLYALGRYDAALTLFERALKEN------PQD---------PEALYWLARTQLKLGL 54

Query: 367 FDEAEKICQMALDIHRENTSPASIEEA---------ADRRLMGLICDSKGDYEAALEHYV 417
            + A +  +  +                        A  R        KG  E AL    
Sbjct: 55  VNPALENGKTLVARTPRYL------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK 108

Query: 418 LASMSMAANGHEL--DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA 475
            A          +    A +    G  Y  L   D+A  S  +AL    + +  +     
Sbjct: 109 DAE--------RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA---- 156

Query: 476 SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELE 535
                LA+LY  +G+L ++ +    AL+    P             +  A+      + E
Sbjct: 157 -----LAELYLSMGRLDEALAQYAKALEQ--APKD-------LDLRVRYASALLLKGKAE 202

Query: 536 QAVKLLNKALKI 547
           +A +        
Sbjct: 203 EAARAAALEHHH 214

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 55.4 bits (133), Expect = 4e-08
 Identities = 37/279 (13%), Positives = 81/279 (29%), Gaps = 57/279 (20%)

Query: 240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYN-EAIPVLERSVEIPVL 298
           +K L+  +  + S ++ A           L +          Y+ EA  +L ++V++   
Sbjct: 85  EKTLQQMEEVLGSAQVEAQ---------ALMLKGKALNVTPDYSPEAEVLLSKAVKLE-- 133

Query: 299 EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV-----LGETDHRVGET 353
               +   A      QLG+ Y   G + ++  C++  L   +       L     ++   
Sbjct: 134 ---PELVEAWN----QLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTD 186

Query: 354 CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADR-----RLMGLICDSKGD 408
                     S    ++ +  ++A+ +                      L      +   
Sbjct: 187 -----SGDEHSRHVMDSVRQAKLAVQM-----DVLDGRSWYILGNAYLSLYFNTGQNPKI 236

Query: 409 YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG 468
            + AL  Y  A      +        +  +    +     + EA+  + +A         
Sbjct: 237 SQQALSAYAQA---EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA-------- 285

Query: 469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507
              PA      R   L   + +L        + L+  GK
Sbjct: 286 ALDPAWPEPQQREQQLLEFLSRL-------TSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 51.5 bits (123), Expect = 7e-07
 Identities = 35/301 (11%), Positives = 75/301 (24%), Gaps = 72/301 (23%)

Query: 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDY-EAALEHYVLASMSMA 424
           + ++  +  +  L   +          A    L G   +   DY   A            
Sbjct: 83  EMEKTLQQMEEVLGSAQVE--------AQALMLKGKALNVTPDYSPEAEVLLS------K 128

Query: 425 ANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL 484
           A   E ++      +G+ Y        A   +  ALT  K+     + ++    ++    
Sbjct: 129 AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSG 188

Query: 485 YHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLID-IAAIYQSMNELEQAVKLLNK 543
                 + DS    + A+++      G     + +  +       Q+    +QA+    +
Sbjct: 189 DEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246

Query: 544 ALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIA 603
           A K+  K                       +  D +                        
Sbjct: 247 AEKVDRKAS---------------------SNPDLHLNR------------------ATL 267

Query: 604 LNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI 663
                      Y   EA + F +A         P   +            + + R+   +
Sbjct: 268 HKYEE-----SY--GEALEGFSQA-----AALDPAWPEP---QQREQQLLEFLSRLTSLL 312

Query: 664 E 664
           E
Sbjct: 313 E 313

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 29/278 (10%), Positives = 82/278 (29%), Gaps = 36/278 (12%)

Query: 448 RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK-LRDSKSYCENALKIYG 506
             ++ +    + L         +    A   +      +       +++     A+K+  
Sbjct: 83  EMEKTLQQMEEVL--------GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-- 132

Query: 507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG 566
           +P               +  +Y    ++  A    + AL         Q         + 
Sbjct: 133 EPEL-------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ--------NLS 177

Query: 567 VMYYMTGNYS--DSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADL- 623
           ++       S  +    +  ++ + + + +      G +   +G A +  Y  N   +  
Sbjct: 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYF-NTGQNPK 235

Query: 624 -FEEARTILEK--EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA 680
             ++A +   +  +          ++ N A  +       +A+E       +        
Sbjct: 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295

Query: 681 N--PDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN 716
                + +   RL  LL+  G+ + +K +S++  L   
Sbjct: 296 QREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPA 333

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 26/158 (16%)

Query: 399 MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK 458
            G++   K D++ AL+ +         +  +   + I  +IG  Y  L    EA  ++ +
Sbjct: 12  EGVLAADKKDWKGALDAF---------SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62

Query: 459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIP----- 513
           ++             +A  + +   LY++  K   +    + AL    + N  I      
Sbjct: 63  SI--------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI-QLRGNQLIDYKILG 113

Query: 514 ---SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548
                     L +IA +Y    E ++A + L  A  + 
Sbjct: 114 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 42/173 (24%)

Query: 262 SLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAM 321
           SL + + L     +      +  A+       +         H+      C  +G  Y +
Sbjct: 2   SLVEAISLWNEGVLAADKKDWKGALDAFSAVQD--------PHSRI----CFNIGCMYTI 49

Query: 322 LGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ------SL-QFDEAEKIC 374
           L  +  +   +T  +                  +++A A+ Q         ++D A K  
Sbjct: 50  LKNMTEAEKAFTRSINRD---------------KHLAVAYFQRGMLYYQTEKYDLAIKDL 94

Query: 375 QMALDIHRENTSPASIEEAADRRL--------MGLICDSKGDYEAALEHYVLA 419
           + AL   R N            +L        +  +   K +++ A E   LA
Sbjct: 95  KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 24/134 (17%)

Query: 399 MGLICDSKGDYEAALEHYVLA-----SMSMAANGHELDVASIDCSIGDAYLSLARFDEAI 453
           +G +     +   A + +  +      +++A               G  Y    ++D AI
Sbjct: 43  IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF-----------QRGMLYYQTEKYDLAI 91

Query: 454 FSYHKALT--------AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY 505
               +AL          +K    +       V   +A +Y K  + + ++     A  + 
Sbjct: 92  KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151

Query: 506 GKPNHGIPSEEIAS 519
            +P H    + +  
Sbjct: 152 SEPRHSKIDKAMEC 165

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 37/280 (13%), Positives = 72/280 (25%), Gaps = 48/280 (17%)

Query: 389 SIEEAADRRLMGLICDSKGDYEAALEHY--VLASMSMAANGHELDVASIDCSIGDAYLSL 446
           S        ++ +        E  L     +LAS ++  +    + A +    G  Y SL
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDD----ERAQLLYERGVLYDSL 56

Query: 447 ARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG 506
                A   + +AL           P +  VF  L     + G    +    ++ L++  
Sbjct: 57  GLRALARNDFSQAL--------AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-- 106

Query: 507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG 566
            P +           ++           + A   L    +                  + 
Sbjct: 107 DPTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DPNDPFRSLWLY 152

Query: 567 VMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEE 626
           +               K A    +   EK         N +         I+E   + E 
Sbjct: 153 LAEQKLD--------EKQAKEVLKQHFEKSDKEQ-WGWNIVEFY---LGNISEQTLM-ER 199

Query: 627 ARTILEK--EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIE 664
            +           +  +T      L   Y ++G +D A  
Sbjct: 200 LKADATDNTSLAEHLSET---NFYLGKYYLSLGDLDSATA 236

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 34/278 (12%), Positives = 74/278 (26%), Gaps = 60/278 (21%)

Query: 279 LGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338
             Q    +  +E+ +    L D  + A   +    + G  Y  LG    +   ++  L I
Sbjct: 18  TLQQEVILARMEQILASRALTD-DERAQLLY----ERGVLYDSLGLRALARNDFSQALAI 72

Query: 339 QRQVLGETDHRVGETCRYVAEAH-------VQSLQFDEAEKICQMALDIHRENTSPASIE 391
           +       D           E          Q+  FD A +     L++           
Sbjct: 73  R------PDM---------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------N 111

Query: 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL--DVASIDCSIGDAYLSLARF 449
            A      G+     G  + A +  +          ++   +       +  A   L   
Sbjct: 112 YA--HLNRGIALYYGGRDKLAQDDLLAF--------YQDDPNDPFRSLWLYLAEQKLDE- 160

Query: 450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN 509
            +A     +          +       V   L ++  +   +   K+   +   +    +
Sbjct: 161 KQAKEVLKQHF----EKSDKEQWGWNIVEFYLGNISEQ-TLMERLKADATDNTSL--AEH 213

Query: 510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
                   +     +   Y S+ +L+ A  L   A+  
Sbjct: 214 L-------SETNFYLGKYYLSLGDLDSATALFKLAVAN 244

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 30/272 (11%), Positives = 69/272 (25%), Gaps = 46/272 (16%)

Query: 240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI-PVL 298
           +  L   ++        A      E+   L+    ++ SLG    A     +++ I P  
Sbjct: 22  EVILARMEQI---LASRALTDD--ERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-- 74

Query: 299 EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVA 358
               D           LG      G  + +   + + LE+         +          
Sbjct: 75  ----DMPEVFN----YLGIYLTQAGNFDAAYEAFDSVLELD------PTY--NYAHLNRG 118

Query: 359 EAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVL 418
            A     +   A+            +           R L   + + K D + A E    
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPND---------PFRSLWLYLAEQKLDEKQAKEVLKQ 169

Query: 419 ASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVF 478
                 ++  +     ++  +G+        +                       ++   
Sbjct: 170 H--FEKSDKEQWGWNIVEFYLGNISE-QTLMERLKADATDNT--------SLAEHLSETN 218

Query: 479 VRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510
             L   Y  +G L  + +  + A+      ++
Sbjct: 219 FYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 14/102 (13%)

Query: 446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY 505
           L    +A+  Y KA+     A G     +A  ++ L   +  +G+ R +++   N +K +
Sbjct: 3   LGLEAQAVPYYEKAI-----ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF 57

Query: 506 GKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
             PNH        +  +  A +  ++   EQ V+LL K +  
Sbjct: 58  --PNH-------QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 11/98 (11%)

Query: 407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA 466
           G    A+ +Y  A   +A+     D+A     +G  + +L  + +A       +      
Sbjct: 4   GLEAQAVPYYEKA---IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV------ 54

Query: 467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504
             +  P   ++ V  A + + +G+           +  
Sbjct: 55  --KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 14/115 (12%)

Query: 279 LGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338
           LG   +A+P  E+++       G+D A         LG T+  LG+   +      G++ 
Sbjct: 3   LGLEAQAVPYYEKAIASG--LQGKDLAECYL----GLGSTFRTLGEYRKAEAVLANGVKQ 56

Query: 339 QRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEA 393
                   +H+      + A       ++++  ++    +    ++ +  S ++A
Sbjct: 57  FP------NHQ--ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQA 103

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE 499
           G+       FD A+  Y KA         E  P   +     A +Y + G     +  CE
Sbjct: 11  GNDAYKKKDFDTALKHYDKAK--------ELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 500 NALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
            A+++     +     +IA     I   Y    + + A+   NK+L  
Sbjct: 63  KAIEV--GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD 450
           ++A   + +G     K D++ AL+HY     +   +       +   +    Y     ++
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHY---DKAKELDP---TNMTYITNQAAVYFEKGDYN 55

Query: 451 EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN 509
           +      KA+        E++  +A  + R+ + Y K  K +D+  +   +L  +  P+
Sbjct: 56  KCRELCEKAI-EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 32/201 (15%)

Query: 391 EEAADRRL-MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID--CSIGDAYLSLA 447
            + ++ +  + +      DY  A      A         + D  +        + Y  L 
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDAL--------KSDPKNELAWLVRAEIYQYLK 56

Query: 448 RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK 507
             D+A  S+ +AL + K    E +            L  ++ +  +S +Y + AL     
Sbjct: 57  VNDKAQESFRQAL-SIKPDSAEINNNYGWF------LCGRLNRPAESMAYFDKALADPTY 109

Query: 508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGV 567
           P             ++         +   A   L ++L         Q        ++  
Sbjct: 110 PTP-------YIANLNKGICSAKQGQFGLAEAYLKRSLAA-------QPQFPPAFKELAR 155

Query: 568 MYYMTGNYSDSYNTLKSAISK 588
              + G   D+    K   S+
Sbjct: 156 TKMLAGQLGDADYYFKKYQSR 176

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 29/206 (14%), Positives = 53/206 (25%), Gaps = 43/206 (20%)

Query: 313 MQLGDTYAMLGQIENSILCYTAGLEIQRQ------VLGETDHRVGETCRYVAEAHVQSLQ 366
            QL   Y        +       L+   +      V  E    +                
Sbjct: 12  TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV-------------- 57

Query: 367 FDEAEKICQMALDIHRENTSPASIEEAADRRL-MGLI-CDSKGDYEAALEHYVLASMSMA 424
            D+A++  + AL I  ++         A+     G   C        ++ ++  A     
Sbjct: 58  NDKAQESFRQALSIKPDS---------AEINNNYGWFLCGRLNRPAESMAYFDKA----L 104

Query: 425 ANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL 484
           A+         + + G       +F  A     ++L A         P     F  LA  
Sbjct: 105 ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPAFKELART 156

Query: 485 YHKIGKLRDSKSYCENALKIYGKPNH 510
               G+L D+  Y +           
Sbjct: 157 KMLAGQLGDADYYFKKYQSRVEVLQA 182

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 36/243 (14%), Positives = 79/243 (32%), Gaps = 49/243 (20%)

Query: 431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK 490
            V++I   +   Y+    + +A  S   AL        ++ P     ++  A++Y  +  
Sbjct: 6   QVSNIKTQLAMEYMRGQDYRQATASIEDAL--------KSDPKNELAWLVRAEIYQYLKV 57

Query: 491 LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI-----AAIYQSMNELEQAVKLLNKAL 545
              ++     AL I  KP+             +I       +   +N   +++   +KAL
Sbjct: 58  NDKAQESFRQALSI--KPDSA-----------EINNNYGWFLCGRLNRPAESMAYFDKAL 104

Query: 546 KIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALN 605
                      T        G+     G +  +   LK +++            F  A  
Sbjct: 105 ADPTY-----PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ--------FPPAFK 151

Query: 606 QMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEI 665
           ++    +    + +A   F++ ++ +E        D L +   +A        + +A   
Sbjct: 152 ELARTKMLAGQLGDADYYFKKYQSRVE----VLQADDLLLGWKIA------KALGNAQAA 201

Query: 666 LEY 668
            EY
Sbjct: 202 YEY 204

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 39/204 (19%)

Query: 469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIY 528
           E    V+++  +LA  Y +    R + +  E+ALK    P +           +  A IY
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKN-------ELAWLVRAEIY 52

Query: 529 QSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ--MGVMYYM-TGNYSDSYNTLKSA 585
           Q +   ++A +   +AL I   +          E     G          ++S      A
Sbjct: 53  QYLKVNDKAQESFRQALSIKPDSA---------EINNNYGWFLCGRLNRPAESMAYFDKA 103

Query: 586 ISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK--EYGPYHHDTL 643
           ++              IA    G+   +          F  A   L++     P      
Sbjct: 104 LADPTYPT------PYIANLNKGICSAK-------QGQFGLAEAYLKRSLAAQPQFPPA- 149

Query: 644 GVYSNLAGTYDAMGRIDDAIEILE 667
             +  LA T    G++ DA    +
Sbjct: 150 --FKELARTKMLAGQLGDADYYFK 171

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 9/124 (7%)

Query: 386 SPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS 445
           S A  + A   + +G     + D+E A  HY     ++  +       +   +    Y  
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHY---DKAIELDP---SNITFYNNKAAVYFE 54

Query: 446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY 505
             +F E +    KA+         ++  +A    R  + + K   L  +  +   +L   
Sbjct: 55  EKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE- 112

Query: 506 GKPN 509
              +
Sbjct: 113 -FRD 115

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 48.9 bits (118), Expect = 3e-07
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 17/109 (15%)

Query: 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498
           +G+AY     +DEAI  Y KAL        E  P  A  +  L + Y+K G   ++  Y 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 58

Query: 499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
           + AL++   P         A    ++   Y    + ++A++   KAL++
Sbjct: 59  QKALEL--DPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 48.5 bits (117), Expect = 4e-07
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 27/151 (17%)

Query: 399 MGLICDSKGDYEAALEHYVLASMSMAANGHEL--DVASIDCSIGDAYLSLARFDEAIFSY 456
           +G     +GDY+ A+E+Y  A         EL    A    ++G+AY     +DEAI  Y
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 58

Query: 457 HKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEE 516
            KAL        E  P  A  +  L + Y+K G   ++  Y + AL++   P        
Sbjct: 59  QKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRS------ 102

Query: 517 IASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
            A    ++   Y    + ++A++   KAL++
Sbjct: 103 -AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 17/114 (14%)

Query: 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498
           +G       ++D+A   +                  A  F+ L      +G    +    
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALC--------MLDHYDARYFLGLGACRQSLGLYEQALQSY 75

Query: 499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP 552
                +    N               A  +  + +L+ A      A  +    P
Sbjct: 76  SYGALM--DINE-------PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 18/141 (12%), Positives = 35/141 (24%), Gaps = 21/141 (14%)

Query: 564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADL 623
            +G   Y  G + D+    ++                      +G          +A   
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDAR--------YFLGLGACRQSLGLYEQALQS 74

Query: 624 FEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD 683
           +     +   E             + A  +  +G +D A              L  A P 
Sbjct: 75  YSYGALMDINEPRFPF--------HAAECHLQLGDLDGAESGFYSAR-----ALAAAQPA 121

Query: 684 VEDEKRRLAELLKEAGRVRNR 704
            E    R   +L+     ++R
Sbjct: 122 HEALAARAGAMLEAVTARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 15/113 (13%)

Query: 399 MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK 458
           +G      G ++ A + +    M    +      A     +G    SL  +++A+ SY  
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSY 77

Query: 459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI-YGKPNH 510
                                  A+ + ++G L  ++S   +A  +   +P H
Sbjct: 78  GA--------LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 23/138 (16%)

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417
                Q+ ++D+A+KI Q    +   +        A     +G    S G YE AL+ Y 
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYD--------ARYFLGLGACRQSLGLYEQALQSYS 76

Query: 418 LASMSMAANGHELDVASID--CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA 475
             +         +D+          + +L L   D A   ++ A      A     PA  
Sbjct: 77  YGA--------LMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR-----ALAAAQPAHE 123

Query: 476 SVFVRLADLYHKIGKLRD 493
           ++  R   +   +   +D
Sbjct: 124 ALAARAGAMLEAVTARKD 141

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 20/146 (13%), Positives = 36/146 (24%), Gaps = 19/146 (13%)

Query: 364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRL-----MGLICDSKGDYEAALEHYVL 418
           SL   E E I    +D      +   I    D  +           +KG  E A   +  
Sbjct: 2   SLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61

Query: 419 ASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVF 478
             +    N   +        +   Y    +F +A   Y  A                +  
Sbjct: 62  LCIYDFYNVDYI------MGLAAIYQIKEQFQQAADLYAVAF--------ALGKNDYTPV 107

Query: 479 VRLADLYHKIGKLRDSKSYCENALKI 504
                   ++     +K   E  ++ 
Sbjct: 108 FHTGQCQLRLKAPLKAKECFELVIQH 133

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 12/126 (9%), Positives = 32/126 (25%), Gaps = 17/126 (13%)

Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
           S    + +  R +EA   +                      + LA +Y    + + +   
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLC--------IYDFYNVDYIMGLAAIYQIKEQFQQAADL 92

Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST 557
              A  +    N   P       +         +    +A +     ++       +   
Sbjct: 93  YAVAFAL--GKNDYTP-------VFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143

Query: 558 IAGIEA 563
            + ++A
Sbjct: 144 QSYLDA 149

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 16/160 (10%), Positives = 43/160 (26%), Gaps = 33/160 (20%)

Query: 225 LLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNE 284
           +     + I+SG   +    +    M                  ++  A    + G+  E
Sbjct: 11  ISTAVIDAINSGATLKDINAIPDDMMDD----------------IYSYAYDFYNKGRIEE 54

Query: 285 AIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLG 344
           A                 D     +   M L   Y +  Q + +   Y     + +    
Sbjct: 55  AEVFFRFLCIY-------DFYNVDY--IMGLAAIYQIKEQFQQAADLYAVAFALGKN--- 102

Query: 345 ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN 384
             D+       +  +  ++     +A++  ++ +    + 
Sbjct: 103 --DY---TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 15/106 (14%), Positives = 26/106 (24%), Gaps = 18/106 (16%)

Query: 357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHY 416
            A       + +EAE   +        N              +  I   K  ++ A + Y
Sbjct: 42  YAYDFYNKGRIEEAEVFFRFLCIYDFYN--------VDYIMGLAAIYQIKEQFQQAADLY 93

Query: 417 VLASMSMAANGHELDVASID--CSIGDAYLSLARFDEAIFSYHKAL 460
            +A          L           G   L L    +A   +   +
Sbjct: 94  AVAF--------ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 20/145 (13%), Positives = 39/145 (26%), Gaps = 21/145 (14%)

Query: 530 SMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEA----QMGVMYYMTGNYSDSYNTLKSA 585
           ++ E E     +  A+   G T    + I              +Y  G   ++    +  
Sbjct: 4   NITENESISTAVIDAIN-SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFL 62

Query: 586 ISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV 645
                             +  +      +    +AADL+  A  + + +Y P  H     
Sbjct: 63  C--------IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH----- 109

Query: 646 YSNLAGTYDAMGRIDDAIEILEYVV 670
                     +     A E  E V+
Sbjct: 110 ---TGQCQLRLKAPLKAKECFELVI 131

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 47.0 bits (113), Expect = 1e-06
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 17/109 (15%)

Query: 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498
           +G+AY     +DEAI  Y KAL        E  P  A  +  L + Y+K G   ++  Y 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKAL--------ELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
           + AL++   PN+       A    ++   Y    + ++A++   KAL++
Sbjct: 67  QKALEL--DPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 17/109 (15%)

Query: 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498
            G + L LA   EA  ++            +  P     +  L     +  K   +    
Sbjct: 23  EGLSMLKLANLAEAALAFEAVC--------QKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
            +A  +   P          +    +A  + + +    A+  L   L  
Sbjct: 75  NHARML--DPKD-------IAVHAALAVSHTNEHNANAALASLRAWLLS 114

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 7/133 (5%)

Query: 386 SPASIEEAADRRLMGLICDSKGDYEAALEHY--VLASMSMAANGHELDVASIDCSIGDAY 443
                +E  +         +   +E  L     +++S S       +    +     DA 
Sbjct: 280 DEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDAC 339

Query: 444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALK 503
           ++L   +EA+F   + +  ++     +HP      +++  L    G    +      A  
Sbjct: 340 INLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399

Query: 504 I----YGKPNHGI 512
           I    +G   H +
Sbjct: 400 IMRVTHG-REHSL 411

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 16/105 (15%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 225 LLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNE 284
           +L    +   +    ++AL    R M+ + I         + + +  +  +    G + +
Sbjct: 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIF-FPGSHPVRGVQVMKVGKLQLHQGMFPQ 389

Query: 285 AIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSI 329
           A+  L  + +I  +  G++H+L +        D   +L + + +I
Sbjct: 390 AMKNLRLAFDIMRVTHGREHSLIE--------DLILLLEECDANI 426

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 2/133 (1%)

Query: 354 CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAAL 413
                E      ++++   +CQ  +  + E     +I +          C + G  E AL
Sbjct: 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEAL 349

Query: 414 EHYVLASMSMAANGHELD--VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH 471
            +                         +G   L    F +A+ +   A    +   G  H
Sbjct: 350 FYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409

Query: 472 PAVASVFVRLADL 484
             +  + + L + 
Sbjct: 410 SLIEDLILLLEEC 422

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 45.3 bits (106), Expect = 5e-05
 Identities = 19/151 (12%), Positives = 48/151 (31%), Gaps = 19/151 (12%)

Query: 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA 425
           Q +    + + A ++  E       +  ++   +  +   K        +  +  M    
Sbjct: 287 QAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHM---- 342

Query: 426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY 485
               +  A          L +  ++ A+    K +  +          VAS++++L  LY
Sbjct: 343 ----MYQAM------GVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392

Query: 486 HKIGKLRDSKSYCENALKI----YGKPNHGI 512
             +      +   + A+ I    +G  +H  
Sbjct: 393 MGLENKAAGEKALKKAIAIMEVAHG-KDHPY 422

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 22/139 (15%)

Query: 366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA 425
                     M  +I     S  ++E+      +       G YE A   +    +    
Sbjct: 2   PLGSGGGTIAMLNEI-----SSDTLEQLYS---LAFNQYQSGXYEDAHXVFQALCVLDHY 53

Query: 426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY 485
           +            +G    ++ ++D AI SY                         A+  
Sbjct: 54  DSRFF------LGLGACRQAMGQYDLAIHSYSYGA--------VMDIXEPRFPFHAAECL 99

Query: 486 HKIGKLRDSKSYCENALKI 504
            + G+L +++S    A ++
Sbjct: 100 LQXGELAEAESGLFLAQEL 118

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 44.9 bits (105), Expect = 8e-05
 Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 7/116 (6%)

Query: 403 CDSKGDYEAALEHY--VLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKAL 460
             S+G Y   ++     L           L V  +     +    L  ++EA     + +
Sbjct: 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378

Query: 461 TAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI----YGKPNHGI 512
             +      N+  +    +R        G +         A  I    +G P+H I
Sbjct: 379 DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG-PSHPI 433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 1/115 (0%)

Query: 529 QSMNELEQAVKLLNKALKIYGKTPGQQST-IAGIEAQMGVMYYMTGNYSDSYNTLKSAIS 587
           +S     + VKL  + L+         +  +  + +    +      Y ++ +  +  + 
Sbjct: 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379

Query: 588 KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDT 642
            +       +A  G+A+ + GL       I     +  +A  IL   +GP H  T
Sbjct: 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT 434

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 41.5 bits (96), Expect = 8e-04
 Identities = 15/147 (10%), Positives = 34/147 (23%), Gaps = 2/147 (1%)

Query: 348 HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKG 407
            +  +      +       + E  K+C+  L+      +  ++       +   +     
Sbjct: 306 IQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ 365

Query: 408 DYEAALEHYVLASMSMAANGHE--LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS 465
            YE A  +            H     +       G         +       KA      
Sbjct: 366 AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV 425

Query: 466 AKGENHPAVASVFVRLADLYHKIGKLR 492
             G +HP    +         ++   R
Sbjct: 426 THGPSHPITKDLEAMRMQTEMELRMFR 452

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)

Query: 535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQM 565
           +QA+K L  +LK+Y         +A I+A M
Sbjct: 19  KQALKKLQASLKLYA--DDSAPALA-IKATM 46

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 9/108 (8%), Positives = 30/108 (27%), Gaps = 15/108 (13%)

Query: 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE 499
           G        + E+I  + KA+        +  P  +  ++      + + +  ++     
Sbjct: 13  GVLQYDAGNYTESIDLFEKAI--------QLDPEESKYWLMKGKALYNLERYEEAVDCYN 64

Query: 500 NALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
             + +    +               A   + +   E   ++     K+
Sbjct: 65  YVINV--IEDE-----YNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 30/120 (25%)

Query: 399 MGLICDSKGDYEAALEHYVLASMSMAANGHELDVA-SID-------CSIGDAYLSLARFD 450
            G++    G+Y  +++ +              + A  +D          G A  +L R++
Sbjct: 12  EGVLQYDAGNYTESIDLF--------------EKAIQLDPEESKYWLMKGKALYNLERYE 57

Query: 451 EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510
           EA+  Y+  +   +            V+   AD    I          E   K+  + +H
Sbjct: 58  EAVDCYNYVINVIED------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKL--EHHH 109

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 11/128 (8%)

Query: 406 KGDYEAALEHYVLASM------SMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKA 459
            G+Y+ A  +   A           A  H    A     + +A   L  FDEA+ S  KA
Sbjct: 24  AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83

Query: 460 LTAFKSAKGENHPAVASVFV----RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSE 515
           L  F   +GE +     +++      A     +G+  ++    +  +++  +     P +
Sbjct: 84  LHYFNR-RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142

Query: 516 EIASGLID 523
           E    +  
Sbjct: 143 ERMMEVAI 150

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 8/129 (6%)

Query: 240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI--PV 297
           ++A+E++            G  +     C   LA     L  ++EA+   ++++      
Sbjct: 35  RRAMEISHTMPPEEAFDHAGFDAF----CHAGLAEALAGLRSFDEALHSADKALHYFNRR 90

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357
            E  QD      +           LG+   ++  +   +E+  +  GET  +  E    V
Sbjct: 91  GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK--ERMMEV 148

Query: 358 AEAHVQSLQ 366
           A   +  L 
Sbjct: 149 AIDRIAQLG 157

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 17/153 (11%)

Query: 404 DSKGDYEAALEHYVLASMSMAANGHELDVASID-CSIGDAYLSLARFDEAIFSYHKALTA 462
           +++  YE  L+ +  A  S   +  E    +      G  Y    ++ +A+  Y K ++ 
Sbjct: 238 NAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW 297

Query: 463 FKSAKG-------ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSE 515
            +   G        +   + + F+ LA  Y K+ +   +   C+ AL +     +     
Sbjct: 298 LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--DSAN----- 350

Query: 516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548
               GL         MNE E A     K L++ 
Sbjct: 351 --EKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
           ++   +L       A+  + + +        E  P     +  L  LY ++ +  D+   
Sbjct: 12  ALAQEHLKHDNASRALALFEELV--------ETDPDYVGTYYHLGKLYERLDRTDDAIDT 63

Query: 498 CENALKIYGKPNHG 511
               +++      G
Sbjct: 64  YAQGIEV--AREEG 75

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEI-PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSIL 330
           LA  H      + A+ + E  VE  P      D+          LG  Y  L + +++I 
Sbjct: 13  LAQEHLKHDNASRALALFEELVETDP------DYVGT----YYHLGKLYERLDRTDDAID 62

Query: 331 CYTAGLEIQRQ 341
            Y  G+E+ R+
Sbjct: 63  TYAQGIEVARE 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	728
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.98
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.97
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.96
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.96
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.96
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.93
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.91
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.91
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.91
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.9
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.89
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.88
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.88
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.88
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.87
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.87
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.86
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.85
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.82
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.82
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.81
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.81
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.81
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.8
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.8
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.79
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.79
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.79
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.79
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.79
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.79
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.79
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.78
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.77
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.77
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.75
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.74
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.71
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.7
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.69
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.66
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.66
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.65
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.65
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.65
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.65
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.64
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.64
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.63
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.63
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.63
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.63
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.63
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.62
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.61
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.61
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.6
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.6
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.6
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.59
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.59
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.58
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.57
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.57
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.56
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.5
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.5
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.49
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.49
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.49
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.48
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.46
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.46
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.45
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.44
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.44
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.43
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.42
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.41
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.41
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.4
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.38
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.38
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.37
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.37
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.36
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.36
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.36
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.35
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.33
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.33
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.32
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.32
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.31
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.31
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.3
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.3
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.29
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.29
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.28
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.28
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.27
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.27
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.26
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.26
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.25
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.25
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.25
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.23
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.23
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.22
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.22
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.21
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.21
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.2
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.2
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.2
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.19
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.19
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.18
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.16
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.15
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.13
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.13
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.1
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.1
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.08
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.08
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.08
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.08
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.07
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.03
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.03
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.02
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.98
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.98
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.96
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.95
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.94
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.93
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.91
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.82
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.82
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.77
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.76
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.75
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.7
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.69
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.65
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.65
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.63
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.63
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.61
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.53
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.53
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.43
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.42
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.33
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.3
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.24
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.15
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.07
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.06
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.01
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.01
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.88
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.85
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.82
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.8
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.76
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.74
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.73
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.71
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.67
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.55
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.35
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.98
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.58
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.55
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.27
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.76
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.72
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.71
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.65
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.46
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	95.38
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.04
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.04
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.72
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.67
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.63
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.57
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.55
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.4
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	94.27
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.94
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.69
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.87
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.69
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.2
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	90.3
2o8p_A	227	14-3-3 domain containing protein; signaling protei	90.05
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	89.27
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.24
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	89.07
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	88.89
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.67
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	88.65
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.26
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	88.12
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	88.04
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	87.86
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	87.54
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	86.32
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	86.25
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	85.8
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	84.85
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	84.82
2npm_A	260	14-3-3 domain containing protein; cell regulator p	84.28
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	84.18
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	83.39
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	82.96
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	82.38
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	81.74
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	80.82

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.6e-36  Score=322.97  Aligned_cols=385  Identities=17%  Similarity=0.211  Sum_probs=344.5

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhH
Q 004829          227 KQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHAL  306 (728)
Q Consensus       227 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  306 (728)
                      .+|..++..| ++++|+..+.+++..         +|....++..+|.++...|++++|+.++++++...     +..+ 
T Consensus         4 ~~a~~~~~~g-~~~~A~~~~~~~~~~---------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~~~-   67 (388)
T 1w3b_A            4 ELAHREYQAG-DFEAAERHCMQLWRQ---------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLLA-   67 (388)
T ss_dssp             THHHHHHHHT-CHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-
T ss_pred             hHHHHHHHCC-CHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCch-
Confidence            4688899997 999999999999875         24456678899999999999999999999999864     3333 


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 004829          307 AKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS  386 (728)
Q Consensus       307 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  386 (728)
                         .++..+|.+|...|++++|+.+|++++.+        .|....++..+|.++...|++++|+..|++++.+.|... 
T Consensus        68 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-  135 (388)
T 1w3b_A           68 ---EAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-  135 (388)
T ss_dssp             ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-
T ss_pred             ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-
Confidence               35999999999999999999999999998        788889999999999999999999999999998765432 


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004829          387 PASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA  466 (728)
Q Consensus       387 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  466 (728)
                             .++..+|.++...|++++|+..|.+++..      .|....++..+|.++...|++++|+..|++++.+    
T Consensus       136 -------~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----  198 (388)
T 1w3b_A          136 -------CVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----  198 (388)
T ss_dssp             -------HHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred             -------HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence                   35889999999999999999999999876      5667889999999999999999999999999998    


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK  546 (728)
Q Consensus       467 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  546 (728)
                          .|....++..+|.++...|++++|+..|++++.+         .|....++..+|.++...|++++|+..|+++++
T Consensus       199 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  265 (388)
T 1w3b_A          199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE  265 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                7888899999999999999999999999999998         334567889999999999999999999999998


Q ss_pred             HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          547 IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEE  626 (728)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  626 (728)
                      +.+..       ..++..+|.++...|++++|+.+|++++++        .+....++..+|.++...|++++|+.+|++
T Consensus       266 ~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  330 (388)
T 1w3b_A          266 LQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             TCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            75443       567889999999999999999999999987        233457899999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829          627 ARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR  700 (728)
Q Consensus       627 al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  700 (728)
                      ++++        .|+...++..+|.+|...|++++|+.+|+++++        .+|....++..+|.++..+|+
T Consensus       331 al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--------~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          331 ALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCCHHHHHhHHHHHHHccC
Confidence            9987        788888999999999999999999999999998        358888999999999998875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=3.4e-35  Score=312.80  Aligned_cols=370  Identities=18%  Similarity=0.231  Sum_probs=333.1

Q ss_pred             HHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHH
Q 004829          271 VLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRV  350 (728)
Q Consensus       271 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  350 (728)
                      .+|..++..|++++|+..|.+++...     ++++.    ++..+|.++...|++++|+.++++++..        +|..
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~----~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~   66 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQE-----PDNTG----VLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL   66 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc
Confidence            36888999999999999999998764     44433    4889999999999999999999999988        7888


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCh
Q 004829          351 GETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL  430 (728)
Q Consensus       351 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  430 (728)
                      ..++..+|.+|...|++++|+..|++++.+.|..        ..++..+|.++...|++++|+..|.+++..      .|
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p  132 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF--------IDGYINLAAALVAAGDMEGAVQAYVSALQY------NP  132 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH------CT
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Confidence            9999999999999999999999999999875443        346889999999999999999999999876      46


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829          431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH  510 (728)
Q Consensus       431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  510 (728)
                      ....++..+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+.+|++++.+      
T Consensus       133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------  198 (388)
T 1w3b_A          133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------  198 (388)
T ss_dssp             TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence            66788999999999999999999999999998        7888899999999999999999999999999998      


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR  590 (728)
Q Consensus       511 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  590 (728)
                         .|....++..+|.++...|++++|+..|++++.+.+..       ..++..+|.+|...|++++|+..|++++++  
T Consensus       199 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--  266 (388)
T 1w3b_A          199 ---DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--  266 (388)
T ss_dssp             ---CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred             ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence               33456789999999999999999999999999986554       567889999999999999999999999986  


Q ss_pred             HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829          591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV  670 (728)
Q Consensus       591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al  670 (728)
                            .+....++..+|.++...|++++|+.+|++++++        .|....++..+|.++...|++++|+.+|++++
T Consensus       267 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  332 (388)
T 1w3b_A          267 ------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKAL  332 (388)
T ss_dssp             ------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  2334568999999999999999999999999998        77778899999999999999999999999998


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829          671 GMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       671 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      +        .+|+...++..++.+|...|++++|+ ..++.+++.+|...
T Consensus       333 ~--------~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~p~~~  373 (388)
T 1w3b_A          333 E--------VFPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPTFA  373 (388)
T ss_dssp             T--------SCTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTTCH
T ss_pred             h--------cCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCH
Confidence            7        35778889999999999999999999 99999999888643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-32  Score=306.98  Aligned_cols=431  Identities=12%  Similarity=0.086  Sum_probs=348.6

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829          220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE  299 (728)
Q Consensus       220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  299 (728)
                      .....+..++..+...| ++++|+.+|++++...         |+. ..+..+|.+|...|++++|+..|++++...   
T Consensus        82 ~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~---------p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---  147 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQ-QYKCAAFVGEKVLDIT---------GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYN---  147 (597)
T ss_dssp             CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH---------CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---
T ss_pred             HHHHHHHHHHHHHHHcc-CchHHHHHHHHHHhhC---------CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccc---
Confidence            45677889999999997 9999999999998642         222 456789999999999999999999987542   


Q ss_pred             cCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--------HHcCCCChHHHHHHHHHHHHHHHhCCHHHHH
Q 004829          300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQR--------QVLGETDHRVGETCRYVAEAHVQSLQFDEAE  371 (728)
Q Consensus       300 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  371 (728)
                         .+    ..+++.++.+|...|++++|+..|++......        .......+....++..+|.+|...|++++|+
T Consensus       148 ---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  220 (597)
T 2xpi_A          148 ---RS----SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK  220 (597)
T ss_dssp             ---TC----HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ---cc----hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence               22    23589999999999999999999985321100        0000012456889999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCC---------------------------------------------------------------C
Q 004829          372 KICQMALDIHRENTSP---------------------------------------------------------------A  388 (728)
Q Consensus       372 ~~~~~al~~~~~~~~~---------------------------------------------------------------~  388 (728)
                      .+|++++...+.....                                                               .
T Consensus       221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  300 (597)
T 2xpi_A          221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING  300 (597)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence            9999998765421100                                                               0


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004829          389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG  468 (728)
Q Consensus       389 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  468 (728)
                      ......++..++.++...|++++|+..|++++..      .+....++..++.++...|++++|+..+++++..      
T Consensus       301 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------  368 (597)
T 2xpi_A          301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR------  368 (597)
T ss_dssp             GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred             CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------
Confidence            0012345777888888888888888888887754      2334456778888888889999998888888876      


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY  548 (728)
Q Consensus       469 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  548 (728)
                        .|....++..+|.+|...|++++|+.+|++++++.         +....++..++.+|...|++++|+.+|++++...
T Consensus       369 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          369 --HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             --CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence              67778889999999999999999999999999872         3345688999999999999999999999999875


Q ss_pred             hcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          549 GKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEAR  628 (728)
Q Consensus       549 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  628 (728)
                      +..       ..++..+|.+|...|++++|+.+|+++++.        .+....++..+|.+|...|++++|+.+|++++
T Consensus       438 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  502 (597)
T 2xpi_A          438 QGT-------HLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQNAL  502 (597)
T ss_dssp             TTC-------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            543       357788999999999999999999999976        12234679999999999999999999999999


Q ss_pred             HHHHHhcCCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHH
Q 004829          629 TILEKEYGPYHHD-TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSR  707 (728)
Q Consensus       629 ~~~~~~~~~~~~~-~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~  707 (728)
                      ++....  +.+|. ...++..+|.+|...|++++|+.+|++++++.        |....++..++.+|...|++++|. .
T Consensus       503 ~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~-~  571 (597)
T 2xpi_A          503 LLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--------TNDANVHTAIALVYLHKKIPGLAI-T  571 (597)
T ss_dssp             HHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred             Hhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHH-H
Confidence            986543  22444 36799999999999999999999999999853        666789999999999999999999 9


Q ss_pred             HHHHHHhhccccc
Q 004829          708 SLVTFLDSNSQNL  720 (728)
Q Consensus       708 ~l~~ll~~~~~~~  720 (728)
                      .++.+++.+|+..
T Consensus       572 ~~~~~l~~~p~~~  584 (597)
T 2xpi_A          572 HLHESLAISPNEI  584 (597)
T ss_dssp             HHHHHHHHCTTCH
T ss_pred             HHHHHHhcCCCCh
Confidence            9999999988753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-31  Score=293.39  Aligned_cols=392  Identities=13%  Similarity=0.075  Sum_probs=329.7

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhc
Q 004829          221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLED  300 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  300 (728)
                      .+..++.+|..++..| +|++|+.+|++++...         |+ ..++..+|.++...|++++|+..|++++++.    
T Consensus         5 ~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~---------p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----   69 (514)
T 2gw1_A            5 YALALKDKGNQFFRNK-KYDDAIKYYNWALELK---------ED-PVFYSNLSACYVSVGDLKKVVEMSTKALELK----   69 (514)
T ss_dssp             HHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHC---------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred             hHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcC---------cc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----
Confidence            4678999999999997 9999999999999862         22 5679999999999999999999999999875    


Q ss_pred             CCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-----------------------c--------------
Q 004829          301 GQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV-----------------------L--------------  343 (728)
Q Consensus       301 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~--------------  343 (728)
                       +..+    .+++.+|.+|..+|++++|+..|++++...+..                       +              
T Consensus        70 -p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  144 (514)
T 2gw1_A           70 -PDYS----KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS  144 (514)
T ss_dssp             -SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred             -hHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence             4443    359999999999999999999999987653100                       0              


Q ss_pred             ----------C------------------------CCChHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHcC-
Q 004829          344 ----------G------------------------ETDHRVGETCRYVAEAHVQ---SLQFDEAEKICQMALDIHRENT-  385 (728)
Q Consensus       344 ----------~------------------------~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~-  385 (728)
                                .                        -..|....++..+|.+++.   .|++++|+.+|++++...+... 
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  224 (514)
T 2gw1_A          145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD  224 (514)
T ss_dssp             ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence                      0                        0002336777888888886   8999999999999998543332 


Q ss_pred             -CCCc----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829          386 -SPAS----IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKAL  460 (728)
Q Consensus       386 -~~~~----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  460 (728)
                       .+..    +..+.++..+|.++...|++++|+.+|++++..      .+. ..++..+|.++...|++++|+.+|++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~  297 (514)
T 2gw1_A          225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPR-VNSYIYMALIMADRNDSTEYYNYFDKAL  297 (514)
T ss_dssp             TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred             cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence             2221    455678999999999999999999999999876      344 8899999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829          461 TAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKL  540 (728)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  540 (728)
                      ..        .|....++..+|.++...|++++|+.+|++++.+...         ...++..+|.++...|++++|+.+
T Consensus       298 ~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~  360 (514)
T 2gw1_A          298 KL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE---------NIFPYIQLACLAYRENKFDDCETL  360 (514)
T ss_dssp             TT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS---------CSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred             hc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh---------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            87        6667788999999999999999999999999987322         345889999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH---cCCH
Q 004829          541 LNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ---RYTI  617 (728)
Q Consensus       541 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~  617 (728)
                      |++++...+..       ..++..+|.++...|++++|+.+|++++..........  ....++..+|.++..   .|++
T Consensus       361 ~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~  431 (514)
T 2gw1_A          361 FSEAKRKFPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVENF  431 (514)
T ss_dssp             HHHHHHHSTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTHH
T ss_pred             HHHHHHHcccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCCH
Confidence            99999886554       35778999999999999999999999998855432211  113488999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      ++|+.+|++++.+        .|....++..+|.+|...|++++|+.+|++++.+.
T Consensus       432 ~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          432 IEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             HHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            9999999999998        77778899999999999999999999999999963

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-30  Score=294.17  Aligned_cols=408  Identities=14%  Similarity=0.127  Sum_probs=336.2

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhh----
Q 004829          223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVL----  298 (728)
Q Consensus       223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----  298 (728)
                      ..+..++..+...| ++++|+..|++++..          +....++..++.+|...|++++|+.+|++.......    
T Consensus       118 ~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  186 (597)
T 2xpi_A          118 NDAFWLAQVYCCTG-DYARAKCLLTKEDLY----------NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNA  186 (597)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHTCGG----------GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------
T ss_pred             hHHHHHHHHHHHcC-cHHHHHHHHHHHhcc----------ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccc
Confidence            56678999999997 999999999988642          223557889999999999999999999974432100    


Q ss_pred             ---hcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH---------------------------------
Q 004829          299 ---EDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV---------------------------------  342 (728)
Q Consensus       299 ---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------------  342 (728)
                         ............+++.+|.+|...|++++|+.+|++++...+..                                 
T Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  266 (597)
T 2xpi_A          187 NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE  266 (597)
T ss_dssp             ----CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred             ccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence               00000001134579999999999999999999999988653210                                 


Q ss_pred             ----------------------------cC--CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHH
Q 004829          343 ----------------------------LG--ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEE  392 (728)
Q Consensus       343 ----------------------------~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  392 (728)
                                                  +.  ...|....++..++.+|...|++++|+.+|++++...+....      
T Consensus       267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------  340 (597)
T 2xpi_A          267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD------  340 (597)
T ss_dssp             GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT------
T ss_pred             hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH------
Confidence                                        00  001244567888999999999999999999999987655332      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829          393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP  472 (728)
Q Consensus       393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  472 (728)
                        ++..++.++...|++++|+..+.+++..      .+....++..+|.+|...|++++|+.+|++++++        .|
T Consensus       341 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~  404 (597)
T 2xpi_A          341 --VYPLHLASLHESGEKNKLYLISNDLVDR------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DP  404 (597)
T ss_dssp             --THHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             --HHHHHHHHHHHhCCHHHHHHHHHHHHhh------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CC
Confidence              4788999999999999999999998754      3556788999999999999999999999999997        77


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829          473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP  552 (728)
Q Consensus       473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  552 (728)
                      ....++..++.+|...|++++|+.+|++++....         ....++..+|.+|...|++++|+.+|++++++.+.. 
T Consensus       405 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-  474 (597)
T 2xpi_A          405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ---------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-  474 (597)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT---------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Confidence            7788999999999999999999999999998732         235678899999999999999999999999875543 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE  632 (728)
Q Consensus       553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  632 (728)
                            ..++..+|.+|...|++++|+.+|+++++.....+.. +.....++..+|.+|...|++++|+.+|++++++  
T Consensus       475 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--  545 (597)
T 2xpi_A          475 ------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN-EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--  545 (597)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             ------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc-hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence                  4678899999999999999999999999987765433 2223678999999999999999999999999998  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829          633 KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLK  696 (728)
Q Consensus       633 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~  696 (728)
                            .|....++..+|.+|...|++++|+.+|++++++        +|+...++..|+.+|.
T Consensus       546 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          546 ------STNDANVHTAIALVYLHKKIPGLAITHLHESLAI--------SPNEIMASDLLKRALE  595 (597)
T ss_dssp             ------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTC
T ss_pred             ------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHh
Confidence                  6777789999999999999999999999999995        3777788888888764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-31  Score=293.32  Aligned_cols=393  Identities=16%  Similarity=0.100  Sum_probs=329.6

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Q 004829          265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLG  344 (728)
Q Consensus       265 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  344 (728)
                      .+..+..+|.+++..|+|++|+..|++++...     ++     ..++..+|.+|...|++++|+.+|+++++.      
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------   68 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED-----PVFYSNLSACYVSVGDLKKVVEMSTKALEL------   68 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc-----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc------
Confidence            46778999999999999999999999999875     22     235999999999999999999999999998      


Q ss_pred             CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC------------------------------------
Q 004829          345 ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA------------------------------------  388 (728)
Q Consensus       345 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------------  388 (728)
                        .|....++..+|.+|...|++++|+..|++++...+......                                    
T Consensus        69 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  146 (514)
T 2gw1_A           69 --KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ  146 (514)
T ss_dssp             --CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred             --ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence              788889999999999999999999999999976543110000                                    


Q ss_pred             -----------------------------------cHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHh----c
Q 004829          389 -----------------------------------SIEEAADRRLMGLICDS---KGDYEAALEHYVLASMSMAA----N  426 (728)
Q Consensus       389 -----------------------------------~~~~a~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~----~  426 (728)
                                                         .+.....+..+|.++..   .|++++|+.+|.+++.....    .
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  226 (514)
T 2gw1_A          147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN  226 (514)
T ss_dssp             ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence                                               00114556778887776   89999999999999874311    1


Q ss_pred             CC----ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829          427 GH----ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENAL  502 (728)
Q Consensus       427 ~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  502 (728)
                      +.    .+....++..+|.++...|++++|+.+|++++..        .|. ..++..+|.++...|++++|+.++++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~  297 (514)
T 2gw1_A          227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKAL  297 (514)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred             ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            22    2677889999999999999999999999999998        566 8899999999999999999999999998


Q ss_pred             HHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829          503 KIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTL  582 (728)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  582 (728)
                      ...         +....++..+|.++...|++++|+.+|++++.+.+..       ..++..+|.++...|++++|+.++
T Consensus       298 ~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~  361 (514)
T 2gw1_A          298 KLD---------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-------IFPYIQLACLAYRENKFDDCETLF  361 (514)
T ss_dssp             TTC---------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-------SHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred             hcC---------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            873         2234678999999999999999999999999875543       357789999999999999999999


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---cCCh
Q 004829          583 KSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA---MGRI  659 (728)
Q Consensus       583 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~---~g~~  659 (728)
                      ++++...        +....++..+|.++...|++++|+.+|++++.+.....  .......++..+|.++..   .|++
T Consensus       362 ~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~  431 (514)
T 2gw1_A          362 SEAKRKF--------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD--GIYVGIAPLVGKATLLTRNPTVENF  431 (514)
T ss_dssp             HHHHHHS--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS--SCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred             HHHHHHc--------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHhhhhhcCCH
Confidence            9999872        22346889999999999999999999999999832210  000113388999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829          660 DDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       660 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      ++|+.+|++++.+        +|....++..+|.+|...|++++|+ ..++.+++..|..
T Consensus       432 ~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~  482 (514)
T 2gw1_A          432 IEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAI-TLFEESADLARTM  482 (514)
T ss_dssp             HHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSSH
T ss_pred             HHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhcccc
Confidence            9999999999985        3666788999999999999999999 9999999988864

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=2.5e-30  Score=287.54  Aligned_cols=392  Identities=13%  Similarity=0.112  Sum_probs=315.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829          220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE  299 (728)
Q Consensus       220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  299 (728)
                      ..+..++.+|..++..| ++++|+.+|++++...         |....++..+|.+|..+|++++|+..|++++.+.   
T Consensus        23 ~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---   89 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAK-NFNEAIKYYQYAIELD---------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---   89 (537)
T ss_dssp             HHHHHHHHHHHHHHHTT-CCC-CHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhC---------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence            35788999999999997 9999999999999862         4457789999999999999999999999999875   


Q ss_pred             cCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH------------------------HHcCC----------
Q 004829          300 DGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQR------------------------QVLGE----------  345 (728)
Q Consensus       300 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------------~~~~~----------  345 (728)
                        +..+    .+++.+|.+|...|++++|+..|+ ++....                        ..+..          
T Consensus        90 --p~~~----~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~  162 (537)
T 3fp2_A           90 --PDHS----KALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP  162 (537)
T ss_dssp             --TTCH----HHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCC
T ss_pred             --CchH----HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence              4443    359999999999999999999995 543321                        11110          


Q ss_pred             --------------------------CChHHHHHHHHHH--------HHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829          346 --------------------------TDHRVGETCRYVA--------EAHVQSLQFDEAEKICQMALDIHRENTSPASIE  391 (728)
Q Consensus       346 --------------------------~~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  391 (728)
                                                ..+........++        ......|++++|+..|++++...+.... ....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~-~~~~  241 (537)
T 3fp2_A          163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP-LREN  241 (537)
T ss_dssp             CHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHH
T ss_pred             hHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch-hhHH
Confidence                                      0000001122222        2223345788888888888766544311 1123


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                      .+.++..+|.++...|++++|+..|.+++..      .|. ..++..+|.++...|++++|+.+|++++..        .
T Consensus       242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~  306 (537)
T 3fp2_A          242 AALALCYTGIFHFLKNNLLDAQVLLQESINL------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------N  306 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------C
Confidence            4567899999999999999999999999876      344 678999999999999999999999999998        7


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      |....++..+|.++...|++++|+.+|++++.+..         ....++..+|.++...|++++|+.+|+++++..+..
T Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  377 (537)
T 3fp2_A          307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP---------ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL  377 (537)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            77788999999999999999999999999999832         234678999999999999999999999999986554


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc----------CCHHHHH
Q 004829          552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR----------YTINEAA  621 (728)
Q Consensus       552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~  621 (728)
                             ..++..+|.++...|++++|+.+|++++...........  ....+..+|.++...          |++++|+
T Consensus       378 -------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~  448 (537)
T 3fp2_A          378 -------PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV--GIGPLIGKATILARQSSQDPTQLDEEKFNAAI  448 (537)
T ss_dssp             -------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS--TTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred             -------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH--HHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence                   357789999999999999999999999998766543322  123467788999999          9999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          622 DLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       622 ~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      .+|++++.+        +|....++..+|.+|..+|++++|+.+|++++++.
T Consensus       449 ~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          449 KLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            999999998        77778899999999999999999999999999965

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.98  E-value=4.3e-30  Score=285.68  Aligned_cols=392  Identities=14%  Similarity=0.116  Sum_probs=312.4

Q ss_pred             hHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHc
Q 004829          264 EQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVL  343 (728)
Q Consensus       264 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  343 (728)
                      ..+..+..+|..++..|++++|+.+|++++...     +..+    .++..+|.+|..+|++++|+..|++++.+     
T Consensus        23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-----   88 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-----PNEP----VFYSNISACYISTGDLEKVIEFTTKALEI-----   88 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----CCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence            357789999999999999999999999999875     4443    35999999999999999999999999998     


Q ss_pred             CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc---------------------------------H
Q 004829          344 GETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS---------------------------------I  390 (728)
Q Consensus       344 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------------~  390 (728)
                         +|....++..+|.++...|++++|+..|+ ++.+.+.......                                 .
T Consensus        89 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~  164 (537)
T 3fp2_A           89 ---KPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN  164 (537)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred             ---CCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence               78888999999999999999999999995 5544433221100                                 0


Q ss_pred             HH---------------------------HHHHHHHH--------HHHHHcCCHHHHHHHHHHHHHHHHhcCCCh----h
Q 004829          391 EE---------------------------AADRRLMG--------LICDSKGDYEAALEHYVLASMSMAANGHEL----D  431 (728)
Q Consensus       391 ~~---------------------------a~~~~~lg--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~  431 (728)
                      ..                           ......++        ......|++++|+..|++++...   +..+    .
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~---p~~~~~~~~  241 (537)
T 3fp2_A          165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN---TVDDPLREN  241 (537)
T ss_dssp             HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHH
T ss_pred             hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC---CCcchhhHH
Confidence            00                           00111222        22223356777777777766432   2222    2


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG  511 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  511 (728)
                      .+.++..+|.++...|++++|+.+|++++..        .|. ..++..+|.++...|++++|+.+|++++...      
T Consensus       242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------  306 (537)
T 3fp2_A          242 AALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN------  306 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC------
Confidence            3667899999999999999999999999998        666 7889999999999999999999999999983      


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT  591 (728)
Q Consensus       512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  591 (728)
                         +....++..+|.++...|++++|+.+|++++.+.+..       ..++..+|.++...|++++|+.+|++++..   
T Consensus       307 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---  373 (537)
T 3fp2_A          307 ---PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------VYPYIQLACLLYKQGKFTESEAFFNETKLK---  373 (537)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence               3346789999999999999999999999999986654       357889999999999999999999999987   


Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----------CChHH
Q 004829          592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM----------GRIDD  661 (728)
Q Consensus       592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~----------g~~~~  661 (728)
                           .+....++..+|.++...|++++|+.+|++++.+......  .......+..+|.++...          |++++
T Consensus       374 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  446 (537)
T 3fp2_A          374 -----FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILARQSSQDPTQLDEEKFNA  446 (537)
T ss_dssp             -----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred             -----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence                 2223468889999999999999999999999998544321  112233567888999999          99999


Q ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829          662 AIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       662 A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      |+.+|++++.+        +|....++..+|.+|..+|++++|+ ..++.+++..|...
T Consensus       447 A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~  496 (537)
T 3fp2_A          447 AIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAI-ELFEDSAILARTMD  496 (537)
T ss_dssp             HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC--CH
T ss_pred             HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCCcH
Confidence            99999999985        4667788999999999999999999 99999999887643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=1.2e-29  Score=275.50  Aligned_cols=401  Identities=14%  Similarity=0.124  Sum_probs=298.4

Q ss_pred             ccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHH
Q 004829          209 EDPLAAGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPV  288 (728)
Q Consensus       209 ~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  288 (728)
                      ..+......+|..+..++.+|..++..| ++++|+.+|++++...         |....++..+|.+|...|++++|+.+
T Consensus        13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~   82 (450)
T 2y4t_A           13 LGTENLYFQSMADVEKHLELGKKLLAAG-QLADALSQFHAAVDGD---------PDNYIAYYRRATVFLAMGKSKAALPD   82 (450)
T ss_dssp             ----------CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4555667788899999999999999997 8999999999998751         34467788899999999999999999


Q ss_pred             HHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHH---HHHHHHHHHHHHhC
Q 004829          289 LERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVG---ETCRYVAEAHVQSL  365 (728)
Q Consensus       289 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g  365 (728)
                      |++++.+.     +..+    .++..+|.+|...|++++|+.+|++++..        .|...   .++..++.++.   
T Consensus        83 ~~~al~~~-----p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~---  142 (450)
T 2y4t_A           83 LTKVIQLK-----MDFT----AARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSENEEKEAQSQLIKSDE---  142 (450)
T ss_dssp             HHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHhcC-----CCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHH---
Confidence            99998874     3332    35889999999999999999999998876        55555   56655554421   


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 004829          366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS  445 (728)
Q Consensus       366 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  445 (728)
                                                 ...+..+|.++...|++++|+.+|++++..      .|....++..+|.+|..
T Consensus       143 ---------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~  189 (450)
T 2y4t_A          143 ---------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAECFIK  189 (450)
T ss_dssp             ---------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHH
T ss_pred             ---------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHH
Confidence                                       112445677777888888888888887765      34556778888888888


Q ss_pred             hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHH-----
Q 004829          446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASG-----  520 (728)
Q Consensus       446 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-----  520 (728)
                      .|++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|++++.+...      .......     
T Consensus       190 ~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~  255 (450)
T 2y4t_A          190 EGEPRKAISDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD------HKRCFAHYKQVK  255 (450)
T ss_dssp             TTCGGGGHHHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------hHHHHHHHHHHH
Confidence            88888888888888877        4555677888888888888888888888888877322      2222222     


Q ss_pred             ----HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829          521 ----LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK  596 (728)
Q Consensus       521 ----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  596 (728)
                          +..+|.++...|++++|+.+|++++.+.+..   ......++..+|.++...|++++|+.++++++.+        
T Consensus       256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------  324 (450)
T 2y4t_A          256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI---AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------  324 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence                2445999999999999999999999875432   2233567889999999999999999999999987        


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH------------HHHcC-----Ch
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT------------YDAMG-----RI  659 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~------------~~~~g-----~~  659 (728)
                      .+....++..+|.++...|++++|+.+|++++++        .|....++..++.+            |..+|     +.
T Consensus       325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~  396 (450)
T 2y4t_A          325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK  396 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence            3334578999999999999999999999999998        77777788888844            45555     56


Q ss_pred             HHHHHHHHH-HHHHHHHHcCCCC--hHHHHHHHHHHHHHHHhCChhHHH
Q 004829          660 DDAIEILEY-VVGMREEKLGTAN--PDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       660 ~~A~~~~~~-al~~~~~~~~~~~--p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                      +++...|++ ++...........  ......+..++..|..+|+.+++.
T Consensus       397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            677888886 5542111110000  123457778889999999888765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=2e-29  Score=275.63  Aligned_cols=411  Identities=14%  Similarity=0.063  Sum_probs=291.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829          238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD  317 (728)
Q Consensus       238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  317 (728)
                      +.+.++..+++.+.....   ..++...+.+|+.||.++..+|++++|+++|++|+++.+...+.......+.++.++|.
T Consensus        26 ~~~~~l~~~e~~~~~~~~---~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~  102 (472)
T 4g1t_A           26 EGENSLDDFEDKVFYRTE---FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAW  102 (472)
T ss_dssp             TTCCCHHHHHHHHHHHTT---SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence            344455555555443221   22334446778999999999999999999999999987644333222223456899999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 004829          318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQS--LQFDEAEKICQMALDIHRENTSPASIEEAAD  395 (728)
Q Consensus       318 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~  395 (728)
                      +|..+|++++|+.+|++++.+.+...+..++..+.++..+|.++...  ++|++|+.+|++++.+.|...        .+
T Consensus       103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~--------~~  174 (472)
T 4g1t_A          103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP--------EF  174 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH--------HH
T ss_pred             HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH--------HH
Confidence            99999999999999999999998877766777788888888877765  479999999999999876532        24


Q ss_pred             HHHHHHHH---HHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcC
Q 004829          396 RRLMGLIC---DSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS----LARFDEAIFSYHKALTAFKSAKG  468 (728)
Q Consensus       396 ~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~  468 (728)
                      +..++.++   ...++.++|++.|++++.+      .|....++..+|..+..    .|++++|+.++++++..      
T Consensus       175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------  242 (472)
T 4g1t_A          175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------  242 (472)
T ss_dssp             HHHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------
Confidence            55566554   4567889999999999876      45556667777766554    56788999999999998      


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHc-----------------
Q 004829          469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM-----------------  531 (728)
Q Consensus       469 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------------  531 (728)
                        .|....++..+|.+|...|++++|+.+|++++++         .|....++..+|.+|...                 
T Consensus       243 --~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~  311 (472)
T 4g1t_A          243 --APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK  311 (472)
T ss_dssp             --CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred             --CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence              7888889999999999999999999999999998         344567888888887643                 


Q ss_pred             --CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 004829          532 --NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGL  609 (728)
Q Consensus       532 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  609 (728)
                        +.+++|+.+|++++.+.+..       ..++..+|.+|...|++++|+.+|++++.+     ...+.....++..+|.
T Consensus       312 ~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~  379 (472)
T 4g1t_A          312 LLELIGHAVAHLKKADEANDNL-------FRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGN  379 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTT-------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhhcCCch-------hhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHH
Confidence              33567778888887776554       235678999999999999999999999875     2223333445666775


Q ss_pred             H-HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 004829          610 A-CVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEK  688 (728)
Q Consensus       610 ~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~  688 (728)
                      + +...|++++|+.+|++++.+        .|......          +....+..++++++.        .+|..+.++
T Consensus       380 ~~~~~~~~~~~Ai~~y~kal~i--------~~~~~~~~----------~~~~~l~~~~~~~l~--------~~p~~~~~~  433 (472)
T 4g1t_A          380 FQLYQMKCEDKAIHHFIEGVKI--------NQKSREKE----------KMKDKLQKIAKMRLS--------KNGADSEAL  433 (472)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHS--------CCCCHHHH----------HHHHHHHHHHHHHHH--------HCC-CTTHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhc--------CcccHHHH----------HHHHHHHHHHHHHHH--------hCCCCHHHH
Confidence            4 45779999999999999987        44432211          112334455556655        357778889


Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          689 RRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       689 ~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                      ..||.+|..+|++++|+ .+++++++..+.+.+
T Consensus       434 ~~LG~~~~~~g~~~~A~-~~y~kALe~~~~~p~  465 (472)
T 4g1t_A          434 HVLAFLQELNEKMQQAD-EDSERGLESGSLIPS  465 (472)
T ss_dssp             HHHHHHHHHHHHCC-------------------
T ss_pred             HHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCCc
Confidence            99999999999999999 999999988777554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=4.5e-30  Score=280.75  Aligned_cols=386  Identities=13%  Similarity=0.023  Sum_probs=287.2

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhh
Q 004829          217 GNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIP  296 (728)
Q Consensus       217 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  296 (728)
                      +++..+..+..+|..+...| ++++|+++|++|+.+.+.......++..+.++.++|.+|..+|++++|+.+|++++.+.
T Consensus        46 ~~~~~a~~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           46 NREFKATMCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             C---CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            44556788889999999998 99999999999999998876555567788899999999999999999999999999987


Q ss_pred             hhhcCCchhHhHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---hCCHHHHH
Q 004829          297 VLEDGQDHALAKFAGCMQLGDTYAML--GQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ---SLQFDEAE  371 (728)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~  371 (728)
                      +...++.++. ...++..+|.++...  ++|++|+.+|++++++        +|....++..++.++..   .+++++|+
T Consensus       125 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~~~~~~~~~~~~~l~~~~~~~~al  195 (472)
T 4g1t_A          125 EKFSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNPEFTSGLAIASYRLDNWPPSQNAI  195 (472)
T ss_dssp             HHSCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHSCCCCCTH
T ss_pred             Hhcccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCchHHHHHH
Confidence            6554443322 234577888877765  4799999999999999        67777788888877554   56778999


Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC
Q 004829          372 KICQMALDIHRENTSPASIEEAADRRLMGLICD----SKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA  447 (728)
Q Consensus       372 ~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  447 (728)
                      ..+++++.+.+..        ..++..+|..+.    ..|++++|+.+|++++..      .|....++..+|.+|...|
T Consensus       196 ~~~~~al~l~p~~--------~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~~~~~  261 (472)
T 4g1t_A          196 DPLRQAIRLNPDN--------QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFYRRKD  261 (472)
T ss_dssp             HHHHHHHHHCSSC--------HHHHHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCcc--------hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHHcC
Confidence            9999999875433        224555665544    456788999999998866      5667788999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHHHHcCC
Q 004829          448 RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI-------------------GKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       448 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~~  508 (728)
                      ++++|+..|+++++.        +|....++..+|.+|...                   +.+++|+.++++++.+.   
T Consensus       262 ~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---  330 (472)
T 4g1t_A          262 EPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN---  330 (472)
T ss_dssp             CHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             chHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence            999999999999998        888889999999988653                   33677888888888873   


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 004829          509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVM-YYMTGNYSDSYNTLKSAIS  587 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~  587 (728)
                            +....++..+|.+|...|++++|+.+|++++.+.+.    ......++..+|.+ +...|++++|+.+|++++.
T Consensus       331 ------~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~  400 (472)
T 4g1t_A          331 ------DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK  400 (472)
T ss_dssp             ------TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             ------CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence                  334567889999999999999999999999976322    11223445566654 4578999999999999998


Q ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004829          588 KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILE  667 (728)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~  667 (728)
                      +.     +....             ..+....+..++++++..        +|..+.++..||.+|..+|++++|+++|+
T Consensus       401 i~-----~~~~~-------------~~~~~~~l~~~~~~~l~~--------~p~~~~~~~~LG~~~~~~g~~~~A~~~y~  454 (472)
T 4g1t_A          401 IN-----QKSRE-------------KEKMKDKLQKIAKMRLSK--------NGADSEALHVLAFLQELNEKMQQADEDSE  454 (472)
T ss_dssp             SC-----CCCHH-------------HHHHHHHHHHHHHHHHHH--------CC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred             cC-----cccHH-------------HHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            62     11111             111234455667777776        78888899999999999999999999999


Q ss_pred             HHHHHH
Q 004829          668 YVVGMR  673 (728)
Q Consensus       668 ~al~~~  673 (728)
                      +|+++.
T Consensus       455 kALe~~  460 (472)
T 4g1t_A          455 RGLESG  460 (472)
T ss_dssp             ------
T ss_pred             HHHhcC
Confidence            999864

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.97  E-value=6.6e-28  Score=257.56  Aligned_cols=344  Identities=14%  Similarity=0.126  Sum_probs=298.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC
Q 004829          309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA  388 (728)
Q Consensus       309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  388 (728)
                      +..+..+|.++...|++++|+.+|++++...    ..+.+....++..+|.++...|++++|+.++++++.+.+...  .
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~   82 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D   82 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--c
Confidence            3458899999999999999999999999982    112223467899999999999999999999999999988765  3


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC--------------------
Q 004829          389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR--------------------  448 (728)
Q Consensus       389 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------  448 (728)
                      ....+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.+|...|+                    
T Consensus        83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~  162 (406)
T 3sf4_A           83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA  162 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence            455677899999999999999999999999999988888888889999999999999999                    


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHH
Q 004829          449 FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIY  528 (728)
Q Consensus       449 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  528 (728)
                      +++|+.++.+++.+....  .+.+....++..+|.+|...|++++|+.++++++.+.....   +....+.++..+|.+|
T Consensus       163 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~  237 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG---DKAAERRAYSNLGNAY  237 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHH
Confidence            999999999999998876  45778889999999999999999999999999999987643   4566788999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 004829          529 QSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMG  608 (728)
Q Consensus       529 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  608 (728)
                      ...|++++|+.+|++++.+.+.. +.......++..+|.+|...|++++|+.+|++++.+....+.  ......++..+|
T Consensus       238 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la  314 (406)
T 3sf4_A          238 IFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSLG  314 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHH
Confidence            99999999999999999999886 455566788999999999999999999999999999887654  355678899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829          609 LACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEY  668 (728)
Q Consensus       609 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~  668 (728)
                      .+|...|++++|+.+|++++++.....  ..+....++..+|.++...|+...+...+.+
T Consensus       315 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~  372 (406)
T 3sf4_A          315 NAYTALGNHDQAMHFAEKHLEISREVG--DKSGELTARLNLSDLQMVLGLSYSTNNSIMS  372 (406)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHTTSCC------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhc--CCcchhHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence            999999999999999999999987763  2567788999999999999987544443333

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.97  E-value=6.5e-28  Score=257.62  Aligned_cols=344  Identities=17%  Similarity=0.199  Sum_probs=300.0

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Q 004829          265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLG  344 (728)
Q Consensus       265 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  344 (728)
                      .+.++..+|.+++..|++++|+.+|++++.+.     +..+.....++..+|.+|...|++++|+.+|++++.+....  
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--   80 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--   80 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--
Confidence            35668889999999999999999999999874     44544456679999999999999999999999999998764  


Q ss_pred             CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCC----------------
Q 004829          345 ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGD----------------  408 (728)
Q Consensus       345 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~----------------  408 (728)
                      .+.+....++..+|.+|...|++++|+.++++++.+.+....  ....+.++..+|.++...|+                
T Consensus        81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~  158 (406)
T 3sf4_A           81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE  158 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred             cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence            345677889999999999999999999999999999988764  34567789999999999999                


Q ss_pred             ----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004829          409 ----YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL  484 (728)
Q Consensus       409 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  484 (728)
                          +++|+.++.+++.+....++.+..+.++..+|.+|...|++++|+.++++++.+....  .+.+....++..+|.+
T Consensus       159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~  236 (406)
T 3sf4_A          159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNA  236 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHH
Confidence                9999999999999998888888999999999999999999999999999999998875  3456677899999999


Q ss_pred             HHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 004829          485 YHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ  564 (728)
Q Consensus       485 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  564 (728)
                      |...|++++|+.++++++.+.....   +......++..+|.+|...|++++|+.+|++++.+.+.. +.......++..
T Consensus       237 ~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~  312 (406)
T 3sf4_A          237 YIFLGEFETASEYYKKTLLLARQLK---DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-NDRIGEGRACWS  312 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhCc---CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence            9999999999999999999987643   456678899999999999999999999999999998887 555566788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829          565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFE  625 (728)
Q Consensus       565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  625 (728)
                      +|.+|...|++++|+.+|++++++....+.  ......++..+|.++...|+...+...+.
T Consensus       313 la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~  371 (406)
T 3sf4_A          313 LGNAYTALGNHDQAMHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGLSYSTNNSIM  371 (406)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence            999999999999999999999999988764  34567889999999999987654443333

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=4.7e-28  Score=262.89  Aligned_cols=353  Identities=15%  Similarity=0.105  Sum_probs=289.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC
Q 004829          309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA  388 (728)
Q Consensus       309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  388 (728)
                      ...++.+|..|...|++++|+.+|++++..        .|....++..+|.++...|++++|+.+|++++.+.+..    
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----   93 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----   93 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----
Confidence            456999999999999999999999999988        67788999999999999999999999999999876443    


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHH---HH------------HHHHHHHHHHhCCHHHHH
Q 004829          389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVA---SI------------DCSIGDAYLSLARFDEAI  453 (728)
Q Consensus       389 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~------------~~~la~~~~~~g~~~~A~  453 (728)
                          ..++..+|.++...|++++|+..|++++..      .|...   .+            +..+|.++...|++++|+
T Consensus        94 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  163 (450)
T 2y4t_A           94 ----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI  163 (450)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                356899999999999999999999998753      23222   33            345578899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC
Q 004829          454 FSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE  533 (728)
Q Consensus       454 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  533 (728)
                      .+|++++..        .|....++..+|.+|...|++++|+.+|++++.....         ...++..+|.+|...|+
T Consensus       164 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~  226 (450)
T 2y4t_A          164 AFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND---------NTEAFYKISTLYYQLGD  226 (450)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS---------CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCC
Confidence            999999998        7777889999999999999999999999999998432         45789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 004829          534 LEQAVKLLNKALKIYGKTPGQQST-----IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMG  608 (728)
Q Consensus       534 ~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  608 (728)
                      +++|+.+|++++.+.+........     .......+|.++...|++++|+.+|++++.+    .+..+.....++..+|
T Consensus       227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~l~  302 (450)
T 2y4t_A          227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT----EPSIAEYTVRSKERIC  302 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHHH
Confidence            999999999999875543100000     0001233499999999999999999999986    2223333456899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 004829          609 LACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEK  688 (728)
Q Consensus       609 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~  688 (728)
                      .++...|++++|+.+|++++.+        +|....++..+|.+|...|++++|+.+|++++++        +|+...++
T Consensus       303 ~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~  366 (450)
T 2y4t_A          303 HCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIR  366 (450)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHH
Confidence            9999999999999999999998        7777889999999999999999999999999984        36666777


Q ss_pred             HHHHHH------------HHHhC-----ChhHHHHHHHH-HHHhhcccccc
Q 004829          689 RRLAEL------------LKEAG-----RVRNRKSRSLV-TFLDSNSQNLK  721 (728)
Q Consensus       689 ~~La~~------------~~~~g-----~~~~A~~~~l~-~ll~~~~~~~~  721 (728)
                      ..++.+            |...|     +.+++. +.++ ..+..+|+...
T Consensus       367 ~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~-~~y~~~~l~~~pd~~~  416 (450)
T 2y4t_A          367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII-KAYRKLALQWHPDNFQ  416 (450)
T ss_dssp             HHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH-HHHHHHHHHSCGGGCC
T ss_pred             HHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH-HHHHHHHHHhCCCCCC
Confidence            777744            44455     455566 5455 46777777653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=1.1e-27  Score=251.01  Aligned_cols=332  Identities=14%  Similarity=0.107  Sum_probs=279.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC
Q 004829          309 FAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA  388 (728)
Q Consensus       309 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  388 (728)
                      +..++.+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+..+++++.+.+..    
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----   70 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----   70 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----
Confidence            345899999999999999999999999998        77788999999999999999999999999999875432    


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCh---hHHHHHHHH------------HHHHHHhCCHHHHH
Q 004829          389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL---DVASIDCSI------------GDAYLSLARFDEAI  453 (728)
Q Consensus       389 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~  453 (728)
                          ..++..+|.++...|++++|+..|++++..      .|   ....++..+            |.++...|++++|+
T Consensus        71 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  140 (359)
T 3ieg_A           71 ----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI  140 (359)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ----chHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence                246899999999999999999999998754      34   455555555            79999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC
Q 004829          454 FSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE  533 (728)
Q Consensus       454 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  533 (728)
                      .++++++..        .|....++..+|.++...|++++|+.++++++...         |....++..+|.++...|+
T Consensus       141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~  203 (359)
T 3ieg_A          141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---------SDNTEAFYKISTLYYQLGD  203 (359)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------SCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCC
Confidence            999999998        77778899999999999999999999999999873         2345789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 004829          534 LEQAVKLLNKALKIYGKTPGQQSTI-----AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMG  608 (728)
Q Consensus       534 ~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  608 (728)
                      +++|+..|+++++..+.........     ......+|.++...|++++|+.++++++...    +........++..+|
T Consensus       204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la  279 (359)
T 3ieg_A          204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERIC  279 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHH
Confidence            9999999999998865541100000     0112355899999999999999999999863    223333456688899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 004829          609 LACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEK  688 (728)
Q Consensus       609 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~  688 (728)
                      .++...|++++|+.+|++++++        +|....++..+|.+|...|++++|+.+|++++++        +|+...++
T Consensus       280 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~  343 (359)
T 3ieg_A          280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIR  343 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHH
Confidence            9999999999999999999998        7777889999999999999999999999999984        46666777


Q ss_pred             HHHHHHHHHhC
Q 004829          689 RRLAELLKEAG  699 (728)
Q Consensus       689 ~~La~~~~~~g  699 (728)
                      ..|+.++..++
T Consensus       344 ~~l~~~~~~~~  354 (359)
T 3ieg_A          344 EGLEKAQRLLK  354 (359)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777776654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=2e-27  Score=249.00  Aligned_cols=336  Identities=14%  Similarity=0.094  Sum_probs=278.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE  345 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  345 (728)
                      +..+..+|.+++..|++++|+..|++++...     +..+    .+++.+|.++...|++++|+.+|++++..       
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------   66 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNY----IAYYRRATVFLAMGKSKAALPDLTKVIAL-------   66 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            4568899999999999999999999999875     3333    35999999999999999999999999998       


Q ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---HcCCCC----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR---ENTSPA----SIEEAADRRLMGLICDSKGDYEAALEHYVL  418 (728)
Q Consensus       346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~  418 (728)
                       .|....++..+|.++...|++++|+..|++++.+.+   ......    .......+..+|.++...|++++|+..+.+
T Consensus        67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  145 (359)
T 3ieg_A           67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK  145 (359)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence             677779999999999999999999999999997654   321100    000011223448999999999999999999


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829          419 ASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC  498 (728)
Q Consensus       419 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  498 (728)
                      ++..      .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++
T Consensus       146 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~  211 (359)
T 3ieg_A          146 ILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEV  211 (359)
T ss_dssp             HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9876      4555788999999999999999999999999987        6777889999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCcHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 004829          499 ENALKIYGKPNHGIPSEEIASG---------LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMY  569 (728)
Q Consensus       499 ~~al~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  569 (728)
                      +++++....      .+.....         ...+|.++...|++++|+..|++++...+..   ......++..+|.++
T Consensus       212 ~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~  282 (359)
T 3ieg_A          212 RECLKLDQD------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV---AEYTVRSKERICHCF  282 (359)
T ss_dssp             HHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHH
T ss_pred             HHHHhhCcc------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHH
Confidence            999998433      3332222         3455899999999999999999999886542   223345677899999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004829          570 YMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNL  649 (728)
Q Consensus       570 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~L  649 (728)
                      ...|++++|+.+|+++++.        .+....++..+|.++...|++++|+.+|++++++        +|+...++..|
T Consensus       283 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l  346 (359)
T 3ieg_A          283 SKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGL  346 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHH
Confidence            9999999999999999987        2334578999999999999999999999999998        77777788888


Q ss_pred             HHHHHHcC
Q 004829          650 AGTYDAMG  657 (728)
Q Consensus       650 a~~~~~~g  657 (728)
                      +.++..++
T Consensus       347 ~~~~~~~~  354 (359)
T 3ieg_A          347 EKAQRLLK  354 (359)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87776544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.96  E-value=2.2e-26  Score=246.56  Aligned_cols=314  Identities=16%  Similarity=0.195  Sum_probs=278.2

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004829          263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV  342 (728)
Q Consensus       263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  342 (728)
                      +..+..+..+|..++..|++++|+.+|++++.+.     +.++.....++..+|.+|...|++++|+.+|++++.+....
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  119 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM  119 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            4556678889999999999999999999999874     44554455679999999999999999999999999998765


Q ss_pred             cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCC--------------
Q 004829          343 LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGD--------------  408 (728)
Q Consensus       343 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------------  408 (728)
                        .+.+....++..+|.+|...|++++|+.++++++.+.+...  +....+.++..+|.++...|+              
T Consensus       120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a  195 (411)
T 4a1s_A          120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV  195 (411)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred             --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence              34578889999999999999999999999999999988765  345567789999999999999              


Q ss_pred             ---HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 004829          409 ---YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY  485 (728)
Q Consensus       409 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  485 (728)
                         +++|+.++.+++.+....++.+....++..+|.+|...|++++|+.+|++++.+....  .+......++..+|.+|
T Consensus       196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~  273 (411)
T 4a1s_A          196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSH  273 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHH
Confidence               9999999999999988888888889999999999999999999999999999998775  34566677999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 004829          486 HKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM  565 (728)
Q Consensus       486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  565 (728)
                      ...|++++|+.+|++++.+.....   +......++..+|.+|...|++++|+.+|++++.+.+.. +.......++..+
T Consensus       274 ~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l  349 (411)
T 4a1s_A          274 IFLGQFEDAAEHYKRTLALAVELG---EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDRIGEARACWSL  349 (411)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHH
Confidence            999999999999999999987642   355678899999999999999999999999999998876 4455667789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          566 GVMYYMTGNYSDSYNTLKSAISKFRT  591 (728)
Q Consensus       566 a~~~~~~g~~~~A~~~~~~al~~~~~  591 (728)
                      |.+|..+|++++|+.+|++++++.+.
T Consensus       350 a~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          350 GNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.96  E-value=4.7e-26  Score=244.01  Aligned_cols=315  Identities=15%  Similarity=0.172  Sum_probs=278.9

Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829          347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN  426 (728)
Q Consensus       347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  426 (728)
                      .+.....+..+|..+...|++++|+.+|++++.+.+.    +....+.++..+|.++...|++++|+.+|++++.+....
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  119 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM  119 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            3566778889999999999999999999999987332    233445679999999999999999999999999999888


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----------------
Q 004829          427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK----------------  490 (728)
Q Consensus       427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------  490 (728)
                      ++.+....++..+|.+|...|++++|+.+|++++.+....  .+.+....++..+|.+|...|+                
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~  197 (411)
T 4a1s_A          120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE  197 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence            8889999999999999999999999999999999998887  4567889999999999999999                


Q ss_pred             -hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 004829          491 -LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMY  569 (728)
Q Consensus       491 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~  569 (728)
                       +++|+.++++++.+.....   +.+....++..+|.+|...|++++|+.+|++++.+.+.. +.......++..+|.+|
T Consensus       198 ~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~  273 (411)
T 4a1s_A          198 ALTRAVEFYQENLKLMRDLG---DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSH  273 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHH
Confidence             9999999999999876643   457788899999999999999999999999999999875 44456677889999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004829          570 YMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNL  649 (728)
Q Consensus       570 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~L  649 (728)
                      ..+|++++|+.+|++++.+......  ......++..+|.++...|++++|+.+|++++.+.....  ..+....++..+
T Consensus       274 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l  349 (411)
T 4a1s_A          274 IFLGQFEDAAEHYKRTLALAVELGE--REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG--DRIGEARACWSL  349 (411)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChHHHHHHHHHH
Confidence            9999999999999999999887643  345578899999999999999999999999999987763  255667799999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829          650 AGTYDAMGRIDDAIEILEYVVGMREE  675 (728)
Q Consensus       650 a~~~~~~g~~~~A~~~~~~al~~~~~  675 (728)
                      |.+|..+|++++|+.+|++++.+.++
T Consensus       350 a~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          350 GNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998643

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.96  E-value=6.4e-26  Score=234.95  Aligned_cols=312  Identities=19%  Similarity=0.237  Sum_probs=273.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE  345 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  345 (728)
                      ...+...|..++..|++++|+.+|++++.+.     +.++.....++..+|.+|...|++++|+.++++++.+....  .
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~   77 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G   77 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence            4457778999999999999999999999874     44544456679999999999999999999999999998765  3


Q ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCC-----------------
Q 004829          346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGD-----------------  408 (728)
Q Consensus       346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-----------------  408 (728)
                      +.+....++..+|.++...|++++|+.++++++.+.+....  ....+.++..+|.++...|+                 
T Consensus        78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a  155 (338)
T 3ro2_A           78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV  155 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence            45677889999999999999999999999999999988753  34556789999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 004829          409 ---YEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY  485 (728)
Q Consensus       409 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  485 (728)
                         +++|+.++.+++.+....++.+....++..+|.++...|++++|+.++++++.+....  .+.+....++..+|.++
T Consensus       156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~  233 (338)
T 3ro2_A          156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAY  233 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHH
Confidence               9999999999999988888888889999999999999999999999999999998776  34566778999999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 004829          486 HKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM  565 (728)
Q Consensus       486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  565 (728)
                      ...|++++|+.++++++.+.....   +......++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l  309 (338)
T 3ro2_A          234 IFLGEFETASEYYKKTLLLARQLK---DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSL  309 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence            999999999999999999977643   456678899999999999999999999999999998876 4455667788999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          566 GVMYYMTGNYSDSYNTLKSAISKFRTS  592 (728)
Q Consensus       566 a~~~~~~g~~~~A~~~~~~al~~~~~~  592 (728)
                      |.+|...|++++|..++++++.+.+..
T Consensus       310 a~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          310 GNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999886543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.96  E-value=2.5e-25  Score=244.05  Aligned_cols=374  Identities=13%  Similarity=0.109  Sum_probs=313.6

Q ss_pred             CChHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhHHHHHHH
Q 004829          219 PALGPFLLKQTREMIS----SGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCS----LGQYNEAIPVLE  290 (728)
Q Consensus       219 p~~~~~l~~~a~~~~~----~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~  290 (728)
                      +..+.+++.+|..++.    .+ ++++|+.+|++++..           ..+.+++.+|.+|..    .+++++|+.+|+
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~-----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  103 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQ-----------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK  103 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            3456889999999998    75 999999999999863           125678899999999    999999999999


Q ss_pred             HhhhhhhhhcCCchhHhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---
Q 004829          291 RSVEIPVLEDGQDHALAKFAGCMQLGDTYAM----LGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ---  363 (728)
Q Consensus       291 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---  363 (728)
                      ++.+..       ++    .+++.||.+|..    .+++++|+.+|+++.+.          ....++..+|.+|..   
T Consensus       104 ~a~~~~-------~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g  162 (490)
T 2xm6_A          104 KAALKG-------LP----QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------GRDSGQQSMGDAYFEGDG  162 (490)
T ss_dssp             HHHHTT-------CH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHCC-------CH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCC
Confidence            998642       22    348899999999    89999999999998765          345789999999998   


Q ss_pred             -hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 004829          364 -SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS----KGDYEAALEHYVLASMSMAANGHELDVASIDCS  438 (728)
Q Consensus       364 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  438 (728)
                       .+++++|+.+|+++++.    ..      ..++..+|.+|..    .+++++|+.+|+++...        ....++..
T Consensus       163 ~~~d~~~A~~~~~~a~~~----~~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~  224 (490)
T 2xm6_A          163 VTRDYVMAREWYSKAAEQ----GN------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------GDELGQLH  224 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHT----TC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHC----CC------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHH
Confidence             88999999999999864    11      3568999999998    89999999999998742        23568899


Q ss_pred             HHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHcCCCC
Q 004829          439 IGDAYLS----LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK----IGKLRDSKSYCENALKIYGKPNH  510 (728)
Q Consensus       439 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~  510 (728)
                      +|.+|..    .+++++|+.+|+++++.          ....+++.+|.+|..    .+++++|+.+|+++.+.      
T Consensus       225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~------  288 (490)
T 2xm6_A          225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ------  288 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT------
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc------
Confidence            9999997    89999999999999864          124578899999999    89999999999999754      


Q ss_pred             CCCcHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHH
Q 004829          511 GIPSEEIASGLIDIAAIYQSM-----NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG---NYSDSYNTL  582 (728)
Q Consensus       511 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~  582 (728)
                        .   ...++..+|.+|...     +++++|+.+|+++.+.     +.    ..+++.+|.+|...|   ++++|+.+|
T Consensus       289 --~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~  354 (490)
T 2xm6_A          289 --G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----GD----ATAQANLGAIYFRLGSEEEHKKAVEWF  354 (490)
T ss_dssp             --T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             --C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----CC----HHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence              1   245788999999998     9999999999999874     11    457789999999877   899999999


Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---
Q 004829          583 KSAISKFRTSGEKKSALFGIALNQMGLACVQ----RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA---  655 (728)
Q Consensus       583 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~---  655 (728)
                      +++++.       .   ...+++.+|.+|..    .+++++|+.+|+++++.        .  ...++++||.+|..   
T Consensus       355 ~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--------~--~~~a~~~Lg~~y~~g~g  414 (490)
T 2xm6_A          355 RKAAAK-------G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--------G--LSAAQVQLGEIYYYGLG  414 (490)
T ss_dssp             HHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHHTSS
T ss_pred             HHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--------C--CHHHHHHHHHHHHcCCC
Confidence            999874       1   24789999999999    89999999999999875        1  24589999999999   


Q ss_pred             -cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829          656 -MGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA  698 (728)
Q Consensus       656 -~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  698 (728)
                       .+++++|+.+|+++++..     +..|....+...|+.++...
T Consensus       415 ~~~d~~~A~~~~~~A~~~~-----~~~~~~~~a~~~l~~~~~~~  453 (490)
T 2xm6_A          415 VERDYVQAWAWFDTASTND-----MNLFGTENRNITEKKLTAKQ  453 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHTTSCHHH
T ss_pred             CCCCHHHHHHHHHHHHHCC-----CCCcCCHHHHHHHHhcCHhH
Confidence             899999999999999864     22266778888888877654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.95  E-value=4.9e-25  Score=228.28  Aligned_cols=310  Identities=15%  Similarity=0.147  Sum_probs=271.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc
Q 004829          310 AGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS  389 (728)
Q Consensus       310 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  389 (728)
                      ..++..|..+...|++++|+.+|++++...    ..+......++..+|.++...|++++|+.++++++.+.....  ..
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~   79 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--DQ   79 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--cc
Confidence            347889999999999999999999999972    112223467899999999999999999999999999988765  34


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC--------------------H
Q 004829          390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR--------------------F  449 (728)
Q Consensus       390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~  449 (728)
                      ...+.++..+|.++...|++++|+.++.+++.+....++.+..+.++..+|.++...|+                    +
T Consensus        80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  159 (338)
T 3ro2_A           80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL  159 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHH
Confidence            55677899999999999999999999999999998888888888999999999999999                    9


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH
Q 004829          450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ  529 (728)
Q Consensus       450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~  529 (728)
                      ++|+.++++++.+....  .+.+....++..+|.++...|++++|+.++++++.+.....   +......++..+|.++.
T Consensus       160 ~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~~~  234 (338)
T 3ro2_A          160 QAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG---DKAAERRAYSNLGNAYI  234 (338)
T ss_dssp             HHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHH
Confidence            99999999999988876  45677788999999999999999999999999999876632   45667789999999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 004829          530 SMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGL  609 (728)
Q Consensus       530 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  609 (728)
                      ..|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.++++++.+......  ......++..+|.
T Consensus       235 ~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~  311 (338)
T 3ro2_A          235 FLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGN  311 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHH
Confidence            9999999999999999999876 555566788899999999999999999999999999887765  3455778999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          610 ACVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       610 ~~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                      +|...|++++|..+|++++.+..+
T Consensus       312 ~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          312 AYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHh
Confidence            999999999999999999998543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=1.7e-26  Score=243.42  Aligned_cols=317  Identities=15%  Similarity=0.130  Sum_probs=249.1

Q ss_pred             HHHHHcCChhHHHH-HHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 004829          274 AIHCSLGQYNEAIP-VLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGE  352 (728)
Q Consensus       274 ~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  352 (728)
                      .++...|+|++|+. .|++++.+.     +..+......++.+|.++...|++++|+.+|+++++.        .|....
T Consensus        33 ~~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~   99 (368)
T 1fch_A           33 EAHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHME   99 (368)
T ss_dssp             -------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHH
T ss_pred             hhhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence            36777899999999 999999875     2222222234889999999999999999999999987        778888


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh-
Q 004829          353 TCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD-  431 (728)
Q Consensus       353 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-  431 (728)
                      ++..+|.++...|++++|+.+|++++.+.+..        ..++..+|.++...|++++|+..|.+++........... 
T Consensus       100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  171 (368)
T 1fch_A          100 AWQYLGTTQAENEQELLAISALRRCLELKPDN--------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP  171 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            99999999999999999999999999886542        346899999999999999999999998865321110000 


Q ss_pred             ---------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829          432 ---------VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPA--VASVFVRLADLYHKIGKLRDSKSYCEN  500 (728)
Q Consensus       432 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~  500 (728)
                               ....+..++.++ ..|++++|+.+|++++..        .|.  ...++..+|.+|...|++++|+.+|++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  242 (368)
T 1fch_A          172 AEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA  242 (368)
T ss_dssp             --------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                     011122566666 999999999999999998        666  678899999999999999999999999


Q ss_pred             HHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          501 ALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN  580 (728)
Q Consensus       501 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  580 (728)
                      ++.+.         |....++..+|.++...|++++|+.+|++++.+.+..       ..++..+|.+|...|++++|+.
T Consensus       243 al~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          243 ALSVR---------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-------IRSRYNLGISCINLGAHREAVE  306 (368)
T ss_dssp             HHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhC---------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHH
Confidence            99983         3346789999999999999999999999999986543       5788999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829          581 TLKSAISKFRTSGEK---KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG  636 (728)
Q Consensus       581 ~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  636 (728)
                      +|++++.+.....+.   ..+....++..+|.++...|++++|..++.+++..+.+.++
T Consensus       307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~  365 (368)
T 1fch_A          307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG  365 (368)
T ss_dssp             HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence            999999986554211   01122578999999999999999999999999998777654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.95  E-value=2.9e-24  Score=235.61  Aligned_cols=352  Identities=13%  Similarity=0.065  Sum_probs=299.6

Q ss_pred             HHHHHHHHHHHHH----cCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Q 004829          266 VMCLHVLAAIHCS----LGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAM----LGQIENSILCYTAGLE  337 (728)
Q Consensus       266 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  337 (728)
                      +.+++.+|.+|..    .+++++|+.+|+++++..       +    ..+++.||.+|..    .+++++|+.+|+++.+
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  107 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-------Y----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL  107 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            5678899999999    899999999999998642       2    2358999999999    9999999999999976


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH----cCCH
Q 004829          338 IQRQVLGETDHRVGETCRYVAEAHVQ----SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS----KGDY  409 (728)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~  409 (728)
                      .          ....+++.||.+|..    .+++++|+.+|+++.+..          ...+++.+|.+|..    .+++
T Consensus       108 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~g~g~~~d~  167 (490)
T 2xm6_A          108 K----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----------RDSGQQSMGDAYFEGDGVTRDY  167 (490)
T ss_dssp             T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCCCH
Confidence            4          245678899999998    889999999999997641          13568899999998    8999


Q ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 004829          410 EAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS----LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY  485 (728)
Q Consensus       410 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  485 (728)
                      ++|+.+|++++..        ....++..+|.+|..    .+++++|+.+|+++++.       .+   ..++..+|.+|
T Consensus       168 ~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y  229 (490)
T 2xm6_A          168 VMAREWYSKAAEQ--------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------GD---ELGQLHLADMY  229 (490)
T ss_dssp             HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHH
Confidence            9999999998753        236789999999999    89999999999999874       12   46788999999


Q ss_pred             HH----cCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 004829          486 HK----IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS----MNELEQAVKLLNKALKIYGKTPGQQST  557 (728)
Q Consensus       486 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~  557 (728)
                      ..    .+++++|+.+|+++++..           ...++..+|.+|..    .+++++|+.+|+++.+.     +    
T Consensus       230 ~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~----  289 (490)
T 2xm6_A          230 YFGIGVTQDYTQSRVLFSQSAEQG-----------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----G----  289 (490)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----T----
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----C----
Confidence            97    899999999999998651           24578899999998    99999999999999753     1    


Q ss_pred             HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 004829          558 IAGIEAQMGVMYYMT-----GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY---TINEAADLFEEART  629 (728)
Q Consensus       558 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~  629 (728)
                      ...+++.+|.+|...     +++++|+.+|+++++.       .+   ..+++.+|.+|...|   ++++|+.+|+++++
T Consensus       290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~  359 (490)
T 2xm6_A          290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------GD---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA  359 (490)
T ss_dssp             CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------CC---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence            145778999999998     9999999999999874       12   468899999999877   89999999999987


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----hCCh
Q 004829          630 ILEKEYGPYHHDTLGVYSNLAGTYDA----MGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE----AGRV  701 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~----~g~~  701 (728)
                      .          ....+++.||.+|..    .+++++|+.+|+++++.          ....++.+||.+|..    .+++
T Consensus       360 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g~~~d~  419 (490)
T 2xm6_A          360 K----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLGVERDY  419 (490)
T ss_dssp             T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCCCCCH
Confidence            5          224589999999999    89999999999999882          235789999999999    8999


Q ss_pred             hHHHHHHHHHHHhhcc
Q 004829          702 RNRKSRSLVTFLDSNS  717 (728)
Q Consensus       702 ~~A~~~~l~~ll~~~~  717 (728)
                      ++|+ ..++.+++..+
T Consensus       420 ~~A~-~~~~~A~~~~~  434 (490)
T 2xm6_A          420 VQAW-AWFDTASTNDM  434 (490)
T ss_dssp             HHHH-HHHHHHHHHHC
T ss_pred             HHHH-HHHHHHHHCCC
Confidence            9999 99999888773

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.94  E-value=2.9e-26  Score=241.54  Aligned_cols=317  Identities=15%  Similarity=0.134  Sum_probs=246.1

Q ss_pred             HHHHhCCHHHHHH-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 004829          360 AHVQSLQFDEAEK-ICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCS  438 (728)
Q Consensus       360 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  438 (728)
                      ++...|+|++|+. .|.+++.+.+.....    .+..++.+|.++...|++++|+.+|++++..      .|....++..
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~  103 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLR----DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEAWQY  103 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTT----TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCccc----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence            5667789999999 999888765543311    1234788999999999999999999999865      4666789999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCC-----
Q 004829          439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIP-----  513 (728)
Q Consensus       439 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----  513 (728)
                      +|.++...|++++|+.+|++++.+        .|....++..+|.+|...|++++|+.++++++.+.........     
T Consensus       104 l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  175 (368)
T 1fch_A          104 LGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG  175 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            999999999999999999999998        7777889999999999999999999999999987433110000     


Q ss_pred             --cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          514 --SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT  591 (728)
Q Consensus       514 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  591 (728)
                        .......+..++.++ ..|++++|+.+|++++.+.+...     ...++..+|.+|...|++++|+.+|++++.+   
T Consensus       176 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---  246 (368)
T 1fch_A          176 AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---  246 (368)
T ss_dssp             ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence              000111222566666 89999999999999999866531     2567889999999999999999999999987   


Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                           .+....++..+|.++...|++++|+.+|++++.+        +|....++..+|.+|..+|++++|+.+|++++.
T Consensus       247 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  313 (368)
T 1fch_A          247 -----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALN  313 (368)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                 2334578999999999999999999999999998        777788999999999999999999999999999


Q ss_pred             HHHHHcC---CCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcc
Q 004829          672 MREEKLG---TANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNS  717 (728)
Q Consensus       672 ~~~~~~~---~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~  717 (728)
                      +.....+   ..++....++..++.+|..+|++++|. ..++..++...
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~~  361 (368)
T 1fch_A          314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADARDLSTLL  361 (368)
T ss_dssp             HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH-HHHTTCHHHHH
T ss_pred             hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH-HhHHHHHHHHH
Confidence            8743311   123344789999999999999999999 66665554433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.7e-25  Score=231.58  Aligned_cols=300  Identities=15%  Similarity=0.137  Sum_probs=258.2

Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 004829          349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH  428 (728)
Q Consensus       349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  428 (728)
                      .....+..+|..++..|++++|+.+|++++...+....        ++..++.++...|++++|+..+.+++..      
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~~~~~------   85 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS--------CLPVHIGTLVELNKANELFYLSHKLVDL------   85 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--------THHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--------hHHHHHHHHHHhhhHHHHHHHHHHHHHh------
Confidence            33456788999999999999999999999987665543        3677889999999999999999999875      


Q ss_pred             ChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          429 ELDVASIDCSIGDAYLSLA-RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      .|....++..+|.++...| ++++|+.+|++++.+        .|....++..+|.++...|++++|+.+|++++.....
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  157 (330)
T 3hym_B           86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG  157 (330)
T ss_dssp             CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred             CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc
Confidence            4556778999999999999 999999999999987        6777788999999999999999999999999999433


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS  587 (728)
Q Consensus       508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  587 (728)
                               ....+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.++++++.
T Consensus       158 ---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          158 ---------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             ---------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                     34567779999999999999999999999876543       57888999999999999999999999999


Q ss_pred             HHHHhCCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829          588 KFRTSGEKKS-ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEIL  666 (728)
Q Consensus       588 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~  666 (728)
                      +....+.... +....++..+|.++...|++++|+.+|++++.+        .|....++..+|.+|..+|++++|+.+|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~  293 (330)
T 3hym_B          222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDYF  293 (330)
T ss_dssp             HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHHHHH
Confidence            8766544322 233568999999999999999999999999998        7777789999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHH-HHhCChh
Q 004829          667 EYVVGMREEKLGTANPDVEDEKRRLAELL-KEAGRVR  702 (728)
Q Consensus       667 ~~al~~~~~~~~~~~p~~~~~~~~La~~~-~~~g~~~  702 (728)
                      ++++++        .|+...++..++.++ ...|+.+
T Consensus       294 ~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          294 HTALGL--------RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence            999984        477778899999988 4566544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.94  E-value=2e-25  Score=231.02  Aligned_cols=294  Identities=13%  Similarity=0.078  Sum_probs=255.2

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE  391 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  391 (728)
                      +..+|..++..|++++|+.+|++++..        +|....++..++.++...|++++|+.++++++...+..       
T Consensus        25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------   89 (330)
T 3hym_B           25 VVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN-------   89 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-------
Confidence            789999999999999999999999988        67777888889999999999999999999999876543       


Q ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          392 EAADRRLMGLICDSKG-DYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN  470 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  470 (728)
                       ..++..+|.++...| ++++|+.+|++++..      .|....++..+|.++...|++++|+.+|++++..        
T Consensus        90 -~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------  154 (330)
T 3hym_B           90 -PVSWFAVGCYYLMVGHKNEHARRYLSKATTL------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--------  154 (330)
T ss_dssp             -THHHHHHHHHHHHSCSCHHHHHHHHHHHHTT------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             -HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence             246889999999999 999999999998754      4556778999999999999999999999999998        


Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .|....++..+|.+|...|++++|+.++++++...         +....++..+|.++...|++++|+.++++++.+.+.
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  225 (330)
T 3hym_B          155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA  225 (330)
T ss_dssp             TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence            66666778889999999999999999999999873         334678999999999999999999999999999876


Q ss_pred             CCCCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          551 TPGQQ--STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEAR  628 (728)
Q Consensus       551 ~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  628 (728)
                      .....  +....++..+|.++...|++++|+.+|++++++.        +....++..+|.++...|++++|+.+|++++
T Consensus       226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (330)
T 3hym_B          226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTAL  297 (330)
T ss_dssp             TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred             ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            53221  2335678899999999999999999999999872        2235789999999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHH-HHcCChH
Q 004829          629 TILEKEYGPYHHDTLGVYSNLAGTY-DAMGRID  660 (728)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~La~~~-~~~g~~~  660 (728)
                      ++        .|+...++..++.++ ...|+.+
T Consensus       298 ~~--------~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          298 GL--------RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             TT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             cc--------CCCchHHHHHHHHHHHHHhCchh
Confidence            98        777788999999998 4555543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.94  E-value=1.4e-23  Score=222.55  Aligned_cols=349  Identities=11%  Similarity=0.082  Sum_probs=271.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH-HHHHHHhCCHHHHH-----------HHHHHHH
Q 004829          311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV-AEAHVQSLQFDEAE-----------KICQMAL  378 (728)
Q Consensus       311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~-----------~~~~~al  378 (728)
                      ..++-...+...+++++|..+++++.+.....  ..++.....+..+ .......+++..+.           ..+++.-
T Consensus        14 ~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~   91 (383)
T 3ulq_A           14 EKINEWYMYIRRFSIPDAEYLRREIKQELDQM--EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID   91 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH
Confidence            45555666778999999999999987765432  1233333222221 12222334444444           4444432


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829          379 DIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK  458 (728)
Q Consensus       379 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  458 (728)
                      . .+...  ........++.+|.++...|++++|+.+|++++.+....++.+..+.++..+|.+|...|++++|+.++++
T Consensus        92 ~-~~~~~--~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~  168 (383)
T 3ulq_A           92 K-KQARL--TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ  168 (383)
T ss_dssp             H-HTHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             h-cCCCc--hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            2 11110  11222334667999999999999999999999998888888888999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829          459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV  538 (728)
Q Consensus       459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  538 (728)
                      +++++... +...+..+.++..+|.+|..+|++++|+.+|++++.+.....   +.+..+.++.++|.+|..+|++++|+
T Consensus       169 al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~lg~~y~~~g~~~~A~  244 (383)
T 3ulq_A          169 AYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK---QPQLMGRTLYNIGLCKNSQSQYEDAI  244 (383)
T ss_dssp             HHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            99998876 222677889999999999999999999999999999987743   46778889999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHH
Q 004829          539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTIN  618 (728)
Q Consensus       539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  618 (728)
                      .+|++++.+.... +..+..+.++..+|.+|..+|++++|+.++++++.+....++.   .....+..+|.++...|++ 
T Consensus       245 ~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-  319 (383)
T 3ulq_A          245 PYFKRAIAVFEES-NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV---IYLSEFEFLKSLYLSGPDE-  319 (383)
T ss_dssp             HHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHTSSCCH-
T ss_pred             HHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhCCCcH-
Confidence            9999999998876 4435568899999999999999999999999999998877643   2233477799999999995 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829          619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG  678 (728)
Q Consensus       619 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~  678 (728)
                         ..+.+++.++++.  ...+....++..||.+|..+|++++|..+|++++.+.+++..
T Consensus       320 ---~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          320 ---EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             ---HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             ---HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence               4455555555544  336777889999999999999999999999999998876544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.94  E-value=1.3e-23  Score=222.77  Aligned_cols=352  Identities=12%  Similarity=0.057  Sum_probs=274.4

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHHHcCChhHHH-----------HH
Q 004829          221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVL-AAIHCSLGQYNEAI-----------PV  288 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~-----------~~  288 (728)
                      ....++.....++..+ ++++|..+++++...+...   ..+++....+..+ .......+++..+.           ..
T Consensus        11 ~v~~~l~~w~~~i~~~-~~~~A~~l~~~i~~~~~~~---~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~   86 (383)
T 3ulq_A           11 SIGEKINEWYMYIRRF-SIPDAEYLRREIKQELDQM---EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDL   86 (383)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhH
Confidence            4455677777788886 9999999999987765443   2234333222222 22233344445444           55


Q ss_pred             HHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHH
Q 004829          289 LERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFD  368 (728)
Q Consensus       289 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  368 (728)
                      ++++-...    ...........++.+|.++...|++++|+.+|++++.+....  ++.+..+.++..+|.+|...|+++
T Consensus        87 ~~~i~~~~----~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~  160 (383)
T 3ulq_A           87 LLEIDKKQ----ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTY  160 (383)
T ss_dssp             HHHHHHHT----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcC----CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHH
Confidence            55432211    011112223356679999999999999999999999886543  334567899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC
Q 004829          369 EAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR  448 (728)
Q Consensus       369 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  448 (728)
                      +|+.++++++++.+.... .....+.++..+|.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..+|+
T Consensus       161 ~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~  239 (383)
T 3ulq_A          161 FSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ  239 (383)
T ss_dssp             HHHHHHHHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence            999999999999988754 2456678899999999999999999999999999999888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHH
Q 004829          449 FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIY  528 (728)
Q Consensus       449 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  528 (728)
                      +++|+.+|++++.+.+...  +.+....++.++|.+|..+|++++|+.++++++.+.....    .+.....+..+|.+|
T Consensus       240 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~~~  313 (383)
T 3ulq_A          240 YEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG----DVIYLSEFEFLKSLY  313 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHH
Confidence            9999999999999987762  2378899999999999999999999999999999976643    344444577899999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829          529 QSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE  594 (728)
Q Consensus       529 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  594 (728)
                      ...|++    ..+.+++...... +..+....++..+|.+|...|++++|..+|++++.+.+.+..
T Consensus       314 ~~~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          314 LSGPDE----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             TSSCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             hCCCcH----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            999995    4455555555554 445566778889999999999999999999999998776644

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.94  E-value=1.3e-24  Score=228.70  Aligned_cols=281  Identities=14%  Similarity=0.096  Sum_probs=226.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829          395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV  474 (728)
Q Consensus       395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  474 (728)
                      .++.+|..+...|++++|+.+|++++..      .|....++..+|.+|...|++++|+.+|++++.+        .|..
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~  132 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQ------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPNN  132 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCC
Confidence            4889999999999999999999999876      4666889999999999999999999999999998        7778


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004829          475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI-PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPG  553 (728)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  553 (728)
                      ..++..+|.+|...|++++|+.+|++++.+........ ........+..+|.++...|++++|+.+|++++.+.+... 
T Consensus       133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-  211 (365)
T 4eqf_A          133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI-  211 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC-
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc-
Confidence            89999999999999999999999999999832210000 0001133445569999999999999999999999865521 


Q ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          554 QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       554 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                          ...++..+|.+|...|++++|+.+|++++++        .+....++..+|.+|...|++++|+.+|++++.+   
T Consensus       212 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---  276 (365)
T 4eqf_A          212 ----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---  276 (365)
T ss_dssp             ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             ----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence                2567889999999999999999999999987        2334678999999999999999999999999999   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH----HHHHHHHHHHHHHHhCChhHHHHHHH
Q 004829          634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD----VEDEKRRLAELLKEAGRVRNRKSRSL  709 (728)
Q Consensus       634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~----~~~~~~~La~~~~~~g~~~~A~~~~l  709 (728)
                           +|....++..+|.+|..+|++++|+.+|++++.+.....++.++.    ...++..|+.++..+|+.+.|. ...
T Consensus       277 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~  350 (365)
T 4eqf_A          277 -----QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ-AAN  350 (365)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH-HHH
T ss_pred             -----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH-HHH
Confidence                 788888999999999999999999999999999886554433332    3678999999999999999988 544


Q ss_pred             HH
Q 004829          710 VT  711 (728)
Q Consensus       710 ~~  711 (728)
                      +.
T Consensus       351 ~~  352 (365)
T 4eqf_A          351 LG  352 (365)
T ss_dssp             TT
T ss_pred             Hh
Confidence            44

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.93  E-value=8.8e-25  Score=230.10  Aligned_cols=285  Identities=15%  Similarity=0.107  Sum_probs=231.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCc
Q 004829          310 AGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPAS  389 (728)
Q Consensus       310 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  389 (728)
                      ..++.+|.++...|++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|++++.+.+..     
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----  132 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN-----  132 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----
Confidence            34899999999999999999999999998        78888999999999999999999999999999886443     


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL----DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKS  465 (728)
Q Consensus       390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  465 (728)
                         ..++..+|.++...|++++|+.+|++++.+........    .....+..+|.++...|++++|+.+|++++.+   
T Consensus       133 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---  206 (365)
T 4eqf_A          133 ---LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---  206 (365)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH---
T ss_pred             ---HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---
Confidence               35699999999999999999999999987632221111    12344556799999999999999999999998   


Q ss_pred             hcCCCCHH--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          466 AKGENHPA--VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNK  543 (728)
Q Consensus       466 ~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  543 (728)
                           .|.  ...++..+|.+|...|++++|+.+|++++.+.         |....++..+|.+|...|++++|+.+|++
T Consensus       207 -----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  272 (365)
T 4eqf_A          207 -----NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR---------PEDYSLWNRLGATLANGDRSEEAVEAYTR  272 (365)
T ss_dssp             -----SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                 555  67889999999999999999999999999983         33467899999999999999999999999


Q ss_pred             HHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc----HHHHHHHHHHHHHHHHcCCHHH
Q 004829          544 ALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS----ALFGIALNQMGLACVQRYTINE  619 (728)
Q Consensus       544 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~  619 (728)
                      ++++.+..       ..++..+|.+|..+|++++|+.+|++++++.........    .....++..++.++...|+.+.
T Consensus       273 al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  345 (365)
T 4eqf_A          273 ALEIQPGF-------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL  345 (365)
T ss_dssp             HHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred             HHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence            99986554       678899999999999999999999999999766543211    1135789999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 004829          620 AADLFEEARTILEKE  634 (728)
Q Consensus       620 A~~~~~~al~~~~~~  634 (728)
                      |.....+.+..+++.
T Consensus       346 a~~~~~~~l~~~~~~  360 (365)
T 4eqf_A          346 FQAANLGDLDVLLRA  360 (365)
T ss_dssp             HHHHHTTCCGGGTTT
T ss_pred             HHHHHHhhHHHHHHh
Confidence            999888776665443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.92  E-value=4.3e-22  Score=210.56  Aligned_cols=343  Identities=15%  Similarity=0.072  Sum_probs=260.4

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHHHcCChhHHH---------HHHHHhhh
Q 004829          226 LKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAA--IHCSLGQYNEAI---------PVLERSVE  294 (728)
Q Consensus       226 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~---------~~~~~al~  294 (728)
                      +.--..++..+ ++++|..+++++...+....   .+.... .++.+-.  .....+.+..+.         ..++++-.
T Consensus        16 l~~wy~~i~~~-~~~~A~~l~~~i~~~~~~~~---~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~   90 (378)
T 3q15_A           16 INEWYKMIRQF-SVPDAEILKAEVEQDIQQME---EDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET   90 (378)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHGGGBC---CCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred             HHHHHHHHHHc-CHHHHHHHHHHHHHHHHHhc---ccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence            33344456674 99999999999877654431   233333 2332222  222234443333         44444322


Q ss_pred             hhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004829          295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKIC  374 (728)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  374 (728)
                      ..    .+.........++.+|..+...|++++|+.+|++++.+....  .+.+..+.++..+|.+|...|+++.|+.++
T Consensus        91 ~~----~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~  164 (378)
T 3q15_A           91 PQ----KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHI  164 (378)
T ss_dssp             GG----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cC----CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            21    111222233467889999999999999999999999886553  335678889999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 004829          375 QMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIF  454 (728)
Q Consensus       375 ~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  454 (728)
                      ++++++.+.... .....+.++..+|.+|...|++++|+.+|.+++.+....++....+.++.++|.+|..+|++++|+.
T Consensus       165 ~~al~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~  243 (378)
T 3q15_A          165 LQALDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE  243 (378)
T ss_dssp             HHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999987654 2345677899999999999999999999999999998888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCH
Q 004829          455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL  534 (728)
Q Consensus       455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  534 (728)
                      +|++++.+.+..   .+|....++..+|.+|..+|++++|+.++++++.+.....    .+.....+..++.++...++.
T Consensus       244 ~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~ly~~~~~~  316 (378)
T 3q15_A          244 HFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS----HKFYKELFLFLQAVYKETVDE  316 (378)
T ss_dssp             HHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC----CSCHHHHHHHHHHHHSSSCCH
T ss_pred             HHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHhCCCcH
Confidence            999999988776   2566689999999999999999999999999999987653    223344568889999988883


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS  592 (728)
Q Consensus       535 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  592 (728)
                          ..+.+++..+... +..+....++..+|.+|...|++++|..+|++++++.+.+
T Consensus       317 ----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~  369 (378)
T 3q15_A          317 ----RKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI  369 (378)
T ss_dssp             ----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence                3333444443333 3444566778899999999999999999999999886543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.92  E-value=1.5e-22  Score=214.07  Aligned_cols=337  Identities=12%  Similarity=0.137  Sum_probs=257.1

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH--HHHhCCHHHHH---------HHHHHHHHHHHHcCC
Q 004829          318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEA--HVQSLQFDEAE---------KICQMALDIHRENTS  386 (728)
Q Consensus       318 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~---------~~~~~al~~~~~~~~  386 (728)
                      .+...+++++|..+++++.......  ..+.... .++.+...  ....+.+..+.         ..+++.-......  
T Consensus        21 ~~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~--   95 (378)
T 3q15_A           21 KMIRQFSVPDAEILKAEVEQDIQQM--EEDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL--   95 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHGGGB--CCCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH--
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHh--cccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC--
Confidence            3478899999999999887664332  1123332 33332221  11122222222         3333321111110  


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004829          387 PASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA  466 (728)
Q Consensus       387 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  466 (728)
                       +.......++.+|..+...|++++|+.+|.+++.+....++.+..+.++..+|.+|...|++++|+.+++++++++...
T Consensus        96 -~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  174 (378)
T 3q15_A           96 -TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH  174 (378)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             -ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence             1122334577899999999999999999999999888888888899999999999999999999999999999998865


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          467 KGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALK  546 (728)
Q Consensus       467 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  546 (728)
                      . ...+..+.++.++|.+|...|++++|+.+|++++++.+...   +....+.++.++|.+|..+|++++|+.+|++++.
T Consensus       175 ~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          175 P-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ---NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             C-CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2 11346789999999999999999999999999999987643   4567788999999999999999999999999999


Q ss_pred             HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCC---HHHHHHH
Q 004829          547 IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT---INEAADL  623 (728)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~  623 (728)
                      +.... +.+ ....++..+|.+|..+|++++|+.++++++++....+...   ....+..++.++...++   +.+|+.+
T Consensus       251 ~~~~~-~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~l~~ly~~~~~~~~~~~al~~  325 (378)
T 3q15_A          251 VSREK-VPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF---YKELFLFLQAVYKETVDERKIHDLLSY  325 (378)
T ss_dssp             HHHHH-CGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC---HHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHhh-CCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            88765 323 3378899999999999999999999999999876655432   23456788889988888   5555555


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829          624 FEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG  678 (728)
Q Consensus       624 ~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~  678 (728)
                      +++       .  ...+....++..+|.+|...|++++|..+|++++++.+++..
T Consensus       326 ~~~-------~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~  371 (378)
T 3q15_A          326 FEK-------K--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK  371 (378)
T ss_dssp             HHH-------T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHh-------C--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence            544       2  235677788899999999999999999999999998876643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=2.5e-23  Score=214.89  Aligned_cols=284  Identities=17%  Similarity=0.116  Sum_probs=236.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829          395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV  474 (728)
Q Consensus       395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  474 (728)
                      .++.+|..+...|++++|+..|++++..      .|....++..+|.++...|++++|+.++++++..        .|..
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~   88 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQA------APEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKD   88 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCC
Confidence            4788999999999999999999999875      4556788999999999999999999999999998        7777


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHH-------------H-HH-HHHHcCCHHHHHH
Q 004829          475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLID-------------I-AA-IYQSMNELEQAVK  539 (728)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-------------l-a~-~~~~~g~~~~A~~  539 (728)
                      ..++..+|.++...|++++|+.++++++.......         ..+..             + +. ++...|++++|+.
T Consensus        89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  159 (327)
T 3cv0_A           89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE---------QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT  159 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT---------TC--------------------CCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH---------HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence            88999999999999999999999999998743321         12222             2 44 5888999999999


Q ss_pred             HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHH
Q 004829          540 LLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINE  619 (728)
Q Consensus       540 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  619 (728)
                      ++++++...+..       ..++..+|.++...|++++|+.++++++..        .+....++..+|.++...|++++
T Consensus       160 ~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~  224 (327)
T 3cv0_A          160 LLHAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQE  224 (327)
T ss_dssp             HHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHH
Confidence            999999886553       578889999999999999999999999987        23335789999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC----ChHHHHHHHHHHHHH
Q 004829          620 AADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA----NPDVEDEKRRLAELL  695 (728)
Q Consensus       620 A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~p~~~~~~~~La~~~  695 (728)
                      |+.+|++++..        .|....++..+|.+|..+|++++|+.+|++++.+.....+..    ......++..++.++
T Consensus       225 A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  296 (327)
T 3cv0_A          225 ALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL  296 (327)
T ss_dssp             HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH
Confidence            99999999998        777778999999999999999999999999999762211110    111788999999999


Q ss_pred             HHhCChhHHHHHHHHHHHhhcccccccCCc
Q 004829          696 KEAGRVRNRKSRSLVTFLDSNSQNLKEDAI  725 (728)
Q Consensus       696 ~~~g~~~~A~~~~l~~ll~~~~~~~~~~~i  725 (728)
                      ..+|++++|. ..++..++..+....-+.+
T Consensus       297 ~~~g~~~~A~-~~~~~~l~~~~~~~~~~~~  325 (327)
T 3cv0_A          297 NVMNRPDLVE-LTYAQNVEPFAKEFGLQSM  325 (327)
T ss_dssp             HHTTCHHHHH-HHTTCCSHHHHHHTTSSCC
T ss_pred             HhcCCHHHHH-HHHHHHHHhcchhhhHHHh
Confidence            9999999999 8887777777666554433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.91  E-value=1e-22  Score=210.23  Aligned_cols=289  Identities=14%  Similarity=0.086  Sum_probs=238.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE  345 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  345 (728)
                      ...++.+|..+...|++++|+.+|++++...     +..+    .++..+|.++...|++++|+.+|++++..       
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------   84 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-----PERE----EAWRSLGLTQAENEKDGLAIIALNHARML-------   84 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence            4457789999999999999999999999864     3333    35889999999999999999999999998       


Q ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHH-HH-HHHHcCCHHHHHHHHHH
Q 004829          346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE-----EAADRRLM-GL-ICDSKGDYEAALEHYVL  418 (728)
Q Consensus       346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~a~~~~~l-g~-~~~~~g~~~~A~~~~~~  418 (728)
                       .|....++..+|.++...|++++|+..+++++...+.........     .......+ +. ++...|++++|+.++++
T Consensus        85 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  163 (327)
T 3cv0_A           85 -DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA  163 (327)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred             -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence             677788999999999999999999999999998766554321100     00001122 44 58889999999999999


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829          419 ASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC  498 (728)
Q Consensus       419 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  498 (728)
                      ++..      .+....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++
T Consensus       164 ~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~  229 (327)
T 3cv0_A          164 ALEM------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQEALDAY  229 (327)
T ss_dssp             HHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9866      3556788999999999999999999999999998        6777889999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc-----HHHHHHHHHHHHHHcC
Q 004829          499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST-----IAGIEAQMGVMYYMTG  573 (728)
Q Consensus       499 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~g  573 (728)
                      ++++...         +....++..+|.++...|++++|+.+|++++.+.+........     ...++..+|.++...|
T Consensus       230 ~~a~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (327)
T 3cv0_A          230 NRALDIN---------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN  300 (327)
T ss_dssp             HHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcC---------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence            9999983         2345688999999999999999999999999998774222211     5778899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhCC
Q 004829          574 NYSDSYNTLKSAISKFRTSGE  594 (728)
Q Consensus       574 ~~~~A~~~~~~al~~~~~~~~  594 (728)
                      ++++|..+++++++.+....+
T Consensus       301 ~~~~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          301 RPDLVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             CHHHHHHHTTCCSHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhcchhhh
Confidence            999999999999988765443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.91  E-value=6.2e-22  Score=202.78  Aligned_cols=279  Identities=18%  Similarity=0.151  Sum_probs=229.4

Q ss_pred             cCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          343 LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMS  422 (728)
Q Consensus       343 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~  422 (728)
                      .+.++|....++..+|.++...|++++|+.++++++.+............+.++..+|.++...|++++|+.+|.+++.+
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999887765556777888999999999999999999999999988


Q ss_pred             HHhc--CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829          423 MAAN--GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCEN  500 (728)
Q Consensus       423 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  500 (728)
                      ....  .+.+....++..+|.+|...|++++|+.+|++++.+.....+.+++....++..+|.++...|++++|+.++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7666  67788899999999999999999999999999999999888888999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC----CCC-C---CcHHHHHHHHHHHHHHc
Q 004829          501 ALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT----PGQ-Q---STIAGIEAQMGVMYYMT  572 (728)
Q Consensus       501 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~-~---~~~~~~~~~la~~~~~~  572 (728)
                      ++.+..... +.+.+....++..+|.+|...|++++|+.+|++++++.+..    ... .   ......+..++..+...
T Consensus       179 a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
T 3nf1_A          179 ALEIYQTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG  257 (311)
T ss_dssp             HHHHHHHTS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence            999977653 34467888999999999999999999999999999886542    000 0   11233344455556666


Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          573 GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       573 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      +.+.+|...+.++...        .+....++..+|.+|...|++++|+.+|++++++
T Consensus       258 ~~~~~a~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          258 TSFGEYGGWYKACKVD--------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCC--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            7777777777777654        5667889999999999999999999999999988

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.91  E-value=8.2e-21  Score=200.34  Aligned_cols=312  Identities=14%  Similarity=0.086  Sum_probs=254.9

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 004829          350 VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE  429 (728)
Q Consensus       350 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  429 (728)
                      ...++..+|.++...|++++|+.++++++...+.   ......+.++..+|.++...|++++|+.++.+++.+....++.
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   89 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   89 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence            4567788899999999999999999999986532   1233456678899999999999999999999999998887777


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829          430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN  509 (728)
Q Consensus       430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  509 (728)
                      .....++.++|.++...|++++|+.++++++.+.....+..++....++..+|.++...|++++|..++++++.+.....
T Consensus        90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  169 (373)
T 1hz4_A           90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  169 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence            77788899999999999999999999999999988765444577888999999999999999999999999999977643


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ-STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                          ++....++..+|.++...|++++|..++++++.+.... +.. .........++.++...|++++|..++++++..
T Consensus       170 ----~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  244 (373)
T 1hz4_A          170 ----PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  244 (373)
T ss_dssp             ----GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             ----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence                22356788999999999999999999999999987654 222 111222224556688999999999999988753


Q ss_pred             HHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829          589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEY  668 (728)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~  668 (728)
                      .    ..........+..+|.++...|++++|...+++++........  .+....++..+|.++...|++++|..+|++
T Consensus       245 ~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  318 (373)
T 1hz4_A          245 E----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  318 (373)
T ss_dssp             C----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             C----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            2    1111222345788999999999999999999999998766321  234456889999999999999999999999


Q ss_pred             HHHHHHH
Q 004829          669 VVGMREE  675 (728)
Q Consensus       669 al~~~~~  675 (728)
                      ++.+...
T Consensus       319 al~~~~~  325 (373)
T 1hz4_A          319 ALKLANR  325 (373)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.90  E-value=1.4e-21  Score=200.04  Aligned_cols=282  Identities=20%  Similarity=0.249  Sum_probs=225.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829          259 GKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI  338 (728)
Q Consensus       259 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  338 (728)
                      +..+|..+.++..+|.++...|++++|+.+|++++.+.....+...+ ....++..+|.+|...|++++|+.+|++++.+
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            44568889999999999999999999999999999987654433333 24567999999999999999999999999999


Q ss_pred             HHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          339 QRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVL  418 (728)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~  418 (728)
                      .....+.+.+....++..+|.+|...|++++|+.++++++.+............+.++..+|.++...|++++|+.+|++
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99888888899999999999999999999999999999999987764445667788899999999999999999999999


Q ss_pred             HHHHHHhc--CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-CCCCH------HHHHHHHHHHHHHHHcC
Q 004829          419 ASMSMAAN--GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK-GENHP------AVASVFVRLADLYHKIG  489 (728)
Q Consensus       419 al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~------~~~~~~~~la~~~~~~g  489 (728)
                      ++......  ++.+....++..+|.+|...|++++|+.+|++++.+..... +...+      .....+..++..+...+
T Consensus       179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
T 3nf1_A          179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT  258 (311)
T ss_dssp             HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence            99887665  55788889999999999999999999999999999865421 11111      12344445555666667


Q ss_pred             ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          490 KLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .+.+|...+.+++..         .+....++..+|.+|...|++++|+.+|++++++.++
T Consensus       259 ~~~~a~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          259 SFGEYGGWYKACKVD---------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             CSCCCC------------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhcCCC---------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            777777777777654         6778999999999999999999999999999998653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.90  E-value=4.2e-21  Score=212.67  Aligned_cols=427  Identities=12%  Similarity=0.023  Sum_probs=305.9

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhh
Q 004829          217 GNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIP  296 (728)
Q Consensus       217 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  296 (728)
                      .+|.....+..++.. ...| ++++|...|++++..+         |.....|..++..+...|++++|..+|++++...
T Consensus         8 ~~P~~~~~w~~l~~~-~~~~-~~~~a~~~~e~al~~~---------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~   76 (530)
T 2ooe_A            8 ENPYDLDAWSILIRE-AQNQ-PIDKARKTYERLVAQF---------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV   76 (530)
T ss_dssp             HCTTCHHHHHHHHHH-HHSS-CHHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred             hCCCCHHHHHHHHHH-HHhC-CHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence            467788888888884 6776 9999999999999853         5557778899999999999999999999999874


Q ss_pred             hhhcCCchhHhHHHHHHHHHH-HHHHhCCHHHHHH----HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH--------
Q 004829          297 VLEDGQDHALAKFAGCMQLGD-TYAMLGQIENSIL----CYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ--------  363 (728)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------  363 (728)
                           + +.    ..|..++. .+...|++++|.+    .|++++..    .|. ++....+|..++.....        
T Consensus        77 -----p-~~----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~~  141 (530)
T 2ooe_A           77 -----L-HI----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSYA  141 (530)
T ss_dssp             -----C-CH----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSSTT
T ss_pred             -----C-Ch----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccHH
Confidence                 3 22    23666664 4456788888776    55555543    332 34445667666666554        


Q ss_pred             -hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHHHHhcCC-
Q 004829          364 -SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLI-------------CDSKGDYEAALEHYVLASMSMAANGH-  428 (728)
Q Consensus       364 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~-------------~~~~g~~~~A~~~~~~al~~~~~~~~-  428 (728)
                       .|+++.|..+|++++. .|..   . .  ...+......             ....+++..|...+............ 
T Consensus       142 ~~~~~~~a~~~y~~al~-~P~~---~-~--~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~  214 (530)
T 2ooe_A          142 ENQRITAVRRVYQRGCV-NPMI---N-I--EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRN  214 (530)
T ss_dssp             HHHHHHHHHHHHHHHTT-SCCT---T-H--HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred             HHhHHHHHHHHHHHHHh-chhh---h-H--HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccc
Confidence             7899999999999997 2211   1 1  1112211111             11345677777766653322222211 


Q ss_pred             ----Chh-------HHHHHHHHHHHHHHh----CCH----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--
Q 004829          429 ----ELD-------VASIDCSIGDAYLSL----ARF----DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK--  487 (728)
Q Consensus       429 ----~~~-------~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--  487 (728)
                          .|.       ....|..........    ++.    ..++..|++++..        .|....++..+|.++..  
T Consensus       215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~  286 (530)
T 2ooe_A          215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSS  286 (530)
T ss_dssp             SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc
Confidence                111       123333332222211    232    4788899999998        67778899999999986  


Q ss_pred             -----cCChH-------HHHHHHHHHHH-HHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829          488 -----IGKLR-------DSKSYCENALK-IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ  554 (728)
Q Consensus       488 -----~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  554 (728)
                           .|+++       +|+..|++++. +         .|....++..++.++...|++++|...|++++++.+..   
T Consensus       287 ~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~---------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---  354 (530)
T 2ooe_A          287 KLLAEKGDMNNAKLFSDEAANIYERAISTL---------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID---  354 (530)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHHHHHTTTT---------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC---
T ss_pred             hhhhhccchhhhhhhhHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC---
Confidence                 79987       89999999986 4         23356789999999999999999999999999863322   


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHH
Q 004829          555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA-CVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                         ...++..++.++...|++++|..+|++|++..        +.....+...+.+ +...|++++|..+|+++++.   
T Consensus       355 ---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--------~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---  420 (530)
T 2ooe_A          355 ---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---  420 (530)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--------TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---
T ss_pred             ---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--------CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---
Confidence               13578889999999999999999999998741        1112334444444 34689999999999999998   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004829          634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD-VEDEKRRLAELLKEAGRVRNRKSRSLVTF  712 (728)
Q Consensus       634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~l  712 (728)
                           .|+...++..++.++...|++++|..+|++++..     .+.+|. ...++..........|+.+.+. .....+
T Consensus       421 -----~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~-----~~~~~~~~~~lw~~~~~~e~~~G~~~~~~-~~~~r~  489 (530)
T 2ooe_A          421 -----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRR  489 (530)
T ss_dssp             -----HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS-----CCSCGGGCHHHHHHHHHHHHHSSCHHHHH-HHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence                 6666778999999999999999999999999974     234454 3456777788888999999999 888888


Q ss_pred             Hhhcccccc
Q 004829          713 LDSNSQNLK  721 (728)
Q Consensus       713 l~~~~~~~~  721 (728)
                      ++..|+..+
T Consensus       490 ~~~~p~~~~  498 (530)
T 2ooe_A          490 FTAFREEYE  498 (530)
T ss_dssp             HHHTHHHHT
T ss_pred             HHHCchhcc
Confidence            888886443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=7.3e-22  Score=206.63  Aligned_cols=253  Identities=11%  Similarity=0.018  Sum_probs=221.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCC
Q 004829          391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR-FDEAIFSYHKALTAFKSAKGE  469 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~  469 (728)
                      ....++..+|.++...|++++|+..|.+++.+      .|....+|+++|.++..+|+ +++|+.+|++++.+       
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-------  161 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-------  161 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-------
Confidence            34567889999999999999999999999977      67888999999999999997 99999999999999       


Q ss_pred             CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829          470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG  549 (728)
Q Consensus       470 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  549 (728)
                       .|....+++++|.++..+|++++|+.+|++++.+         .|....+|.++|.++..+|++++|+.+|++++++.+
T Consensus       162 -~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l---------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P  231 (382)
T 2h6f_A          162 -QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ---------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV  231 (382)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence             8999999999999999999999999999999999         455678999999999999999999999999999977


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC--CHHHHH
Q 004829          550 KTPGQQSTIAGIEAQMGVMYYM-TGNYSDS-----YNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY--TINEAA  621 (728)
Q Consensus       550 ~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~  621 (728)
                      ..       ..+++++|.++.. .|.+++|     +.+|++++.+        .+....+++++|.++...|  ++++|+
T Consensus       232 ~~-------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~~~~a~  296 (382)
T 2h6f_A          232 RN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSKYPNLL  296 (382)
T ss_dssp             TC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred             CC-------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccchHHHH
Confidence            65       6788999999999 5655888     5899999987        4445679999999999988  689998


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---------ChHHHHHHHHHH-HHHHHHHcCCCChHHHHHHHHH
Q 004829          622 DLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG---------RIDDAIEILEYV-VGMREEKLGTANPDVEDEKRRL  691 (728)
Q Consensus       622 ~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g---------~~~~A~~~~~~a-l~~~~~~~~~~~p~~~~~~~~L  691 (728)
                      +.++++ +.        +|+...++..||.+|..+|         .+++|+.+|+++ ++        .+|.....|..+
T Consensus       297 ~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------~DP~r~~~w~~~  359 (382)
T 2h6f_A          297 NQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------KDTIRKEYWRYI  359 (382)
T ss_dssp             HHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------TCGGGHHHHHHH
T ss_pred             HHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------hCchhHHHHHHH
Confidence            888775 43        6677779999999999985         258888888887 66        468888889888


Q ss_pred             HHHHHHh
Q 004829          692 AELLKEA  698 (728)
Q Consensus       692 a~~~~~~  698 (728)
                      +..+..+
T Consensus       360 ~~~l~~~  366 (382)
T 2h6f_A          360 GRSLQSK  366 (382)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.7e-21  Score=190.38  Aligned_cols=253  Identities=15%  Similarity=0.172  Sum_probs=215.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                      .+..+..+|.++...|++++|+.+|.+++...       ....++..+|.++...|++++|+.++++++.+..... .+.
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~   75 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR-ADY   75 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-cch
Confidence            45679999999999999999999999998763       2356899999999999999999999999999865431 223


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      +....++..+|.++...|++++|+.+|++++.+...                 +.++...|++++|+..+++++...+. 
T Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~~~~~~a~~~~~~~~~~~~~-  137 (258)
T 3uq3_A           76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----------------ADILTKLRNAEKELKKAEAEAYVNPE-  137 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHHHHHHHHHHHCCHH-
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----------------hHHHHHHhHHHHHHHHHHHHHHcCcc-
Confidence            444889999999999999999999999999998321                 35677888999999999999876443 


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL  631 (728)
Q Consensus       552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  631 (728)
                            ...++..+|.++...|++++|+.+|++++..        .+....++..+|.++...|++++|+.+|++++.+ 
T Consensus       138 ------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-  202 (258)
T 3uq3_A          138 ------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-  202 (258)
T ss_dssp             ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             ------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence                  3678899999999999999999999999987        2333578999999999999999999999999998 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 004829          632 EKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAEL  694 (728)
Q Consensus       632 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~  694 (728)
                             .|....++..+|.+|..+|++++|+.+|++++++..+..  ..|....++..|+.+
T Consensus       203 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          203 -------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKA  256 (258)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHT
T ss_pred             -------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHHh
Confidence                   777788999999999999999999999999999875543  336666666666554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.1e-20  Score=187.65  Aligned_cols=254  Identities=18%  Similarity=0.132  Sum_probs=216.9

Q ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 004829          348 HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG  427 (728)
Q Consensus       348 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  427 (728)
                      +..+.++..+|.++...|++++|+.+|++++... ..        ..++..+|.++...|++++|+.++.+++.+.....
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   72 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD--------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR   72 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence            3567889999999999999999999999999876 21        24689999999999999999999999998866543


Q ss_pred             -CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829          428 -HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       428 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (728)
                       +.+....++..+|.++...|++++|+.+|++++.+        .+.        +.++...|++++|+..+++++..  
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~--------~~~~~~~~~~~~a~~~~~~~~~~--  134 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--------HRT--------ADILTKLRNAEKELKKAEAEAYV--  134 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC--------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------Cch--------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence             33444789999999999999999999999999997        333        45678889999999999999886  


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAI  586 (728)
Q Consensus       507 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  586 (728)
                             .+....++..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.+|++++
T Consensus       135 -------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          135 -------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             -------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                   57788999999999999999999999999999986554       5688899999999999999999999999


Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004829          587 SKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT  652 (728)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~  652 (728)
                      +.        .+....++..+|.++...|++++|+.+|++++++......  .|....++..++.+
T Consensus       201 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          201 EK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKA  256 (258)
T ss_dssp             HH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred             Hh--------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence            87        2334678999999999999999999999999999544322  35666666666554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.89  E-value=7.4e-22  Score=198.22  Aligned_cols=263  Identities=9%  Similarity=-0.015  Sum_probs=218.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh
Q 004829          352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD  431 (728)
Q Consensus       352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  431 (728)
                      ..++.+|.+++..|++++|+..|+++++..+....        ++..+|.++...|++++|+.+|.+++..   ..+...
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~   72 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------IYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKA   72 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------THHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhH
Confidence            45788999999999999999999999987665432        4889999999999999999999998862   233344


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG  511 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  511 (728)
                      ...++..+|.++...|++++|+.+|++++++        .|....++..+|.+|...|++++|+.+|++++.+       
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------  137 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------  137 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------
Confidence            4778999999999999999999999999998        7777889999999999999999999999999877       


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 004829          512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN---YSDSYNTLKSAISK  588 (728)
Q Consensus       512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~  588 (728)
                        .+....++..+|......+++++|+.+|++++++.+..       ..++..+|.++...|+   +++|+.+|++++++
T Consensus       138 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  208 (272)
T 3u4t_A          138 --TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV  208 (272)
T ss_dssp             --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence              23346788999944555569999999999999987655       5678889999999999   99999999999999


Q ss_pred             HHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004829          589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG  657 (728)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g  657 (728)
                      ..............++..+|.+|...|++++|+.+|++++++        +|+...++..++.+....+
T Consensus       209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-------
T ss_pred             HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcccc
Confidence            765443322335678999999999999999999999999999        7777778777776655443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=7.8e-22  Score=206.43  Aligned_cols=255  Identities=9%  Similarity=0.014  Sum_probs=223.3

Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh
Q 004829          347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGD-YEAALEHYVLASMSMAA  425 (728)
Q Consensus       347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~  425 (728)
                      .|....++..+|.++...|++++|+..|++++.+.|..        ..+|+.+|.++...|+ +++|+..|++++.+   
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~--------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l---  161 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN--------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  161 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC--------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH---
Confidence            78889999999999999999999999999999987654        3579999999999997 99999999999987   


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY  505 (728)
Q Consensus       426 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  505 (728)
                         .|....+|+++|.++..+|++++|+..|++++++        .|....++.++|.++..+|++++|+.+|++++++ 
T Consensus       162 ---~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l-  229 (382)
T 2h6f_A          162 ---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-  229 (382)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-
T ss_pred             ---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-
Confidence               6778899999999999999999999999999999        8999999999999999999999999999999999 


Q ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC--CHHH
Q 004829          506 GKPNHGIPSEEIASGLIDIAAIYQS-MNELEQA-----VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG--NYSD  577 (728)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~  577 (728)
                              .|....+|+++|.++.. .|.+++|     +.+|++++.+.+..       ..+++++|.++...|  ++++
T Consensus       230 --------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~-------~~a~~~l~~ll~~~g~~~~~~  294 (382)
T 2h6f_A          230 --------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-------ESAWNYLKGILQDRGLSKYPN  294 (382)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHTTTCGGGCHH
T ss_pred             --------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHccCccchHH
Confidence                    45567899999999999 5554777     59999999987765       578899999999988  6899


Q ss_pred             HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHHHHHhcCCCChhHHHHHH
Q 004829          578 SYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY---------TINEAADLFEEA-RTILEKEYGPYHHDTLGVYS  647 (728)
Q Consensus       578 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~  647 (728)
                      |+..++++ +.        .+....++..+|.+|..+|         .+++|+.+|+++ +++        +|.....|.
T Consensus       295 a~~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------DP~r~~~w~  357 (382)
T 2h6f_A          295 LLNQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--------DTIRKEYWR  357 (382)
T ss_dssp             HHHHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------CGGGHHHHH
T ss_pred             HHHHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------CchhHHHHH
Confidence            98887665 21        2223578899999999874         258999999998 787        899888999


Q ss_pred             HHHHHHHHc
Q 004829          648 NLAGTYDAM  656 (728)
Q Consensus       648 ~La~~~~~~  656 (728)
                      .++..+..+
T Consensus       358 ~~~~~l~~~  366 (382)
T 2h6f_A          358 YIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.89  E-value=5.4e-20  Score=194.04  Aligned_cols=313  Identities=12%  Similarity=0.037  Sum_probs=249.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE  345 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  345 (728)
                      ..++..+|.++...|++++|+.++++++....    ...+.....++..+|.++...|++++|+.++++++.+.+..  .
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~   87 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--D   87 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--C
Confidence            55677889999999999999999999998752    22223345578999999999999999999999999998763  1


Q ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 004829          346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA  425 (728)
Q Consensus       346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  425 (728)
                      +......++..+|.++...|++++|+.++++++.+.+.......+..+.++..+|.++...|++++|+.++.+++.+...
T Consensus        88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A           88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            22344567889999999999999999999999999988766544455667889999999999999999999999988765


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP-AVASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       426 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      .+.. ....++..+|.++...|++++|..++++++.+....  .... ........++.++...|++++|..++++++..
T Consensus       168 ~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  244 (373)
T 1hz4_A          168 YQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG--KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  244 (373)
T ss_dssp             SCGG-GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             cCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence            5433 356789999999999999999999999999885443  1111 11222234566788999999999999988754


Q ss_pred             HcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS  584 (728)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  584 (728)
                      ...     ........+..++.++...|++++|...+++++...+.. +.......++..+|.++...|++++|...+++
T Consensus       245 ~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  318 (373)
T 1hz4_A          245 EFA-----NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  318 (373)
T ss_dssp             CCT-----TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCC-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            211     111223356889999999999999999999999998875 43444556788899999999999999999999


Q ss_pred             HHHHHHHhC
Q 004829          585 AISKFRTSG  593 (728)
Q Consensus       585 al~~~~~~~  593 (728)
                      ++.+....+
T Consensus       319 al~~~~~~g  327 (373)
T 1hz4_A          319 ALKLANRTG  327 (373)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHhcccc
Confidence            999876544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.88  E-value=4e-21  Score=193.55  Aligned_cols=268  Identities=16%  Similarity=0.153  Sum_probs=220.4

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 004829          320 AMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLM  399 (728)
Q Consensus       320 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l  399 (728)
                      ...|++++|+.+|++++++..+..+.++|....++..+|.+|...|++++|+.++++++.+.........+..+.++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            35689999999999999999999888889999999999999999999999999999999999887666667788899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 004829          400 GLICDSKGDYEAALEHYVLASMSMAAN--GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASV  477 (728)
Q Consensus       400 g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  477 (728)
                      |.++...|++++|+.+|.+++.+....  .+.+....++.++|.+|...|++++|+.+|++++.++....+.+.+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999999887554  446888999999999999999999999999999999999988889999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 004829          478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST  557 (728)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  557 (728)
                      +..+|.+|...|++++|+.++++++.+......+...+.....+..++..+...+....+. .+..+...........+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA-PYGEYGSWYKACKVDSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHhcCCCCHH
Confidence            9999999999999999999999999985432111122233445666676666655544443 355555555555445567


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                      ...++..+|.+|..+|++++|+.+|++++++
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7888999999999999999999999999864

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.88  E-value=9.9e-22  Score=197.30  Aligned_cols=249  Identities=12%  Similarity=0.089  Sum_probs=213.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCC
Q 004829          434 SIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIP  513 (728)
Q Consensus       434 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  513 (728)
                      ..+..+|.+++..|++++|+..|+++++.        .|....++..+|.+|...|++++|+.++++++...      .+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~   69 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV------NA   69 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS------CT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc------Cc
Confidence            45778999999999999999999999987        66667789999999999999999999999999832      12


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829          514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG  593 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  593 (728)
                      ......++..+|.++...|++++|+.+|++++++.+..       ..++..+|.+|...|++++|+.+|++++++     
T Consensus        70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----  137 (272)
T 3u4t_A           70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----  137 (272)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred             hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence            23346789999999999999999999999999986654       367889999999999999999999999876     


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Q 004829          594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGR---IDDAIEILEYVV  670 (728)
Q Consensus       594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~---~~~A~~~~~~al  670 (728)
                         .+....++..+|..+...+++++|+.+|++++++        .|....++..+|.++..+|+   +++|+.+|++++
T Consensus       138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence               2334578999995555566999999999999998        77778899999999999999   999999999999


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829          671 GMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       671 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      ++......+..+....++..+|.+|...|++++|+ .+++.+++.+|.+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~~  255 (272)
T 3u4t_A          207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD-AAWKNILALDPTNK  255 (272)
T ss_dssp             HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCH
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCccHH
Confidence            98754422222335689999999999999999999 99999999998864

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.88  E-value=8.4e-22  Score=212.81  Aligned_cols=384  Identities=13%  Similarity=0.085  Sum_probs=266.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh---hHHHHHHHHhhhhhhhhcCC
Q 004829          226 LKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQY---NEAIPVLERSVEIPVLEDGQ  302 (728)
Q Consensus       226 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~  302 (728)
                      ..+|..++..| ++++|+.+|+++...      +.     +.+++.+|.+|...|++   ++|+.+|+++++.       
T Consensus         7 ~~la~~~~~~g-~~~~A~~~~~~aa~~------g~-----~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------   67 (452)
T 3e4b_A            7 QRLANEALKRG-DTVTAQQNYQQLAEL------GY-----SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-------   67 (452)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHH------TC-----CTGGGTCC--------------------------------
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHHC------CC-----HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------
Confidence            45788899997 999999999999764      22     33467899999999999   9999999999853       


Q ss_pred             chhHhHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          303 DHALAKFAGCMQLGDTYAMLG-----QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA  377 (728)
Q Consensus       303 ~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  377 (728)
                       ++    .+++.||.++...+     ++++|+.+|++++..          ....+++.||.+|...+...++...++..
T Consensus        68 -~~----~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~  132 (452)
T 3e4b_A           68 -SP----RAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN----------GEGNTLIPLAMLYLQYPHSFPNVNAQQQI  132 (452)
T ss_dssp             --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT----------TCSSCHHHHHHHHHHCGGGCTTCCHHHHH
T ss_pred             -CH----HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence             22    23889999777766     889999999999874          12238899999999888766665555555


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC---CHHHHHH
Q 004829          378 LDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA---RFDEAIF  454 (728)
Q Consensus       378 l~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~  454 (728)
                      ....+...       ..+++.+|.+|...+.++++.............  .++.   +++.+|.+|...|   ++++|+.
T Consensus       133 ~~a~~~g~-------~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--~~~~---a~~~Lg~~~~~~g~~~~~~~A~~  200 (452)
T 3e4b_A          133 SQWQAAGY-------PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--TTDI---CYVELATVYQKKQQPEQQAELLK  200 (452)
T ss_dssp             HHHHHHTC-------TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--TCTT---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHCCC-------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--CCHH---HHHHHHHHHHHcCCcccHHHHHH
Confidence            44443322       236889999999999777666654433332221  1222   8899999999999   9999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH-H-
Q 004829          455 SYHKALTAFKSAKGENHPAVASVFVRLADLYHKI----GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAI-Y-  528 (728)
Q Consensus       455 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~-  528 (728)
                      +|+++.+.        .+..+..+++||.+|...    +++++|+.+|+++. .  .         ...+++++|.+ + 
T Consensus       201 ~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~--g---------~~~a~~~Lg~~~~~  260 (452)
T 3e4b_A          201 QMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P--G---------YPASWVSLAQLLYD  260 (452)
T ss_dssp             HHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G--G---------STHHHHHHHHHHHH
T ss_pred             HHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C--C---------CHHHHHHHHHHHHh
Confidence            99999987        566667778999999766    79999999999987 1  1         34678899998 4 


Q ss_pred             -HHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q 004829          529 -QSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG-----NYSDSYNTLKSAISKFRTSGEKKSALFGI  602 (728)
Q Consensus       529 -~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~  602 (728)
                       ...+++++|+.+|+++.+.     +    ...++++||.+|. .|     ++++|+.+|+++. .       .   ...
T Consensus       261 ~~~~~d~~~A~~~~~~Aa~~-----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g---~~~  319 (452)
T 3e4b_A          261 FPELGDVEQMMKYLDNGRAA-----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------R---EVA  319 (452)
T ss_dssp             SGGGCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------T---CHH
T ss_pred             CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------C---CHH
Confidence             5789999999999999853     2    2567889999998 66     9999999999987 1       1   247


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHH
Q 004829          603 ALNQMGLACVQ----RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA----MGRIDDAIEILEYVVGMRE  674 (728)
Q Consensus       603 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~al~~~~  674 (728)
                      ++++||.+|..    ..++++|+.+|+++.+.       .+   ..+.++||.+|..    ..++.+|..+|+++.+.  
T Consensus       320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--  387 (452)
T 3e4b_A          320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-------GQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ--  387 (452)
T ss_dssp             HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-------TC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-------Ch---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC--
Confidence            89999999887    34999999999999764       13   3478999999985    56899999999999872  


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHhhcc
Q 004829          675 EKLGTANPDVEDEKRRLAELLKEA--GRVRNRKSRSLVTFLDSNS  717 (728)
Q Consensus       675 ~~~~~~~p~~~~~~~~La~~~~~~--g~~~~A~~~~l~~ll~~~~  717 (728)
                           .++.   +...++.+...+  ++..+|. ..++.....++
T Consensus       388 -----g~~~---a~~~l~~l~~~~~~~~~~~a~-~~~~~~~~~~~  423 (452)
T 3e4b_A          388 -----DTPE---ANDLATQLEAPLTPAQRAEGQ-RLVQQELAARG  423 (452)
T ss_dssp             -----CCHH---HHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHH
T ss_pred             -----CCHH---HHHHHHHHHHhCCHHHHHHHH-HHHHHHHHhcc
Confidence                 3333   444455554332  3444555 55555554443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.87  E-value=2e-21  Score=187.94  Aligned_cols=199  Identities=18%  Similarity=0.219  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG  511 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  511 (728)
                      .+.++..+|.++...|++++|+..|++++.+        .|....++..+|.++...|++++|+..|++++++       
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------   68 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------   68 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            3467899999999999999999999999998        8888999999999999999999999999999999       


Q ss_pred             CCcHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          512 IPSEEIASGLIDIAAIYQSM-----------NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN  580 (728)
Q Consensus       512 ~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  580 (728)
                        .|....++..+|.++...           |++++|+..|++++++.+..       ..++..+|.++..+|++++|+.
T Consensus        69 --~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~A~~  139 (217)
T 2pl2_A           69 --TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------APLHLQRGLVYALLGERDKAEA  139 (217)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCChHHHHH
Confidence              344677899999999999           99999999999999987655       5788899999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004829          581 TLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRID  660 (728)
Q Consensus       581 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~  660 (728)
                      .|++++++.         ....++..+|.++...|++++|+..|++++++        +|+...++..+|.++..+|+++
T Consensus       140 ~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~  202 (217)
T 2pl2_A          140 SLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAE  202 (217)
T ss_dssp             HHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC-----
T ss_pred             HHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHH
Confidence            999999982         23578999999999999999999999999999        8888889999999999999999


Q ss_pred             HHHHHHHHHHH
Q 004829          661 DAIEILEYVVG  671 (728)
Q Consensus       661 ~A~~~~~~al~  671 (728)
                      +|+.+|+++..
T Consensus       203 ~A~~~~~~~~~  213 (217)
T 2pl2_A          203 EAARAAALEHH  213 (217)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.87  E-value=3.8e-20  Score=186.36  Aligned_cols=269  Identities=17%  Similarity=0.220  Sum_probs=220.7

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829          443 YLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI  522 (728)
Q Consensus       443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  522 (728)
                      ....|++++|+.+|+++++++.+..+.+++....++..+|.+|...|++++|+.++++++.+..... +.+++....++.
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~   89 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL-GKDHPAVAATLN   89 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTCHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc-CCcchHHHHHHH
Confidence            3457899999999999999999998888899999999999999999999999999999999976543 245688899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q 004829          523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ-STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG  601 (728)
Q Consensus       523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  601 (728)
                      .+|.+|...|++++|+.+|++++.+.....+.. +....++..+|.+|...|++++|+.+|++++.+.........+...
T Consensus        90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            999999999999999999999999987653433 4667889999999999999999999999999998888777677788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829          602 IALNQMGLACVQRYTINEAADLFEEARTILEKEY-GPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA  680 (728)
Q Consensus       602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  680 (728)
                      .++..+|.++...|++++|+.+|++++.+..... +..++.....+..++..+...+....+.. +..+.... +..+..
T Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~  247 (283)
T 3edt_B          170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWY-KACKVD  247 (283)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHH-HhcCCC
Confidence            9999999999999999999999999999865532 22344445567777777776666555544 44444333 344567


Q ss_pred             ChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829          681 NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS  715 (728)
Q Consensus       681 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~  715 (728)
                      +|....++..||.+|..+|++++|. ..++.+++.
T Consensus       248 ~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~  281 (283)
T 3edt_B          248 SPTVNTTLRSLGALYRRQGKLEAAH-TLEDCASRN  281 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence            8999999999999999999999999 888888764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.86  E-value=1.3e-20  Score=182.15  Aligned_cols=197  Identities=21%  Similarity=0.195  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE  345 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  345 (728)
                      +.+++.+|.++...|++++|+..|++++.+.     +..+.    +++.+|.++...|++++|+..|++++++       
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~~-------   68 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-----PQDPE----ALYWLARTQLKLGLVNPALENGKTLVAR-------   68 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----SSCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            4568899999999999999999999999875     55544    4999999999999999999999999999       


Q ss_pred             CChHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          346 TDHRVGETCRYVAEAHVQS-----------LQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALE  414 (728)
Q Consensus       346 ~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~  414 (728)
                       .|....++..+|.++...           |++++|+..|++++++.|..        ..++..+|.++...|++++|+.
T Consensus        69 -~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--------~~~~~~lg~~~~~~g~~~~A~~  139 (217)
T 2pl2_A           69 -TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--------APLHLQRGLVYALLGERDKAEA  139 (217)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--------HHHHHHHHHHHHHcCChHHHHH
Confidence             888899999999999999           99999999999999986643        3468999999999999999999


Q ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHH
Q 004829          415 HYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDS  494 (728)
Q Consensus       415 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  494 (728)
                      .|++++.+.       ....++.++|.+|...|++++|+..|++++++        .|....++..+|.++...|++++|
T Consensus       140 ~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A  204 (217)
T 2pl2_A          140 SLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEA  204 (217)
T ss_dssp             HHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC-------
T ss_pred             HHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHH
Confidence            999998772       34678899999999999999999999999998        888889999999999999999999


Q ss_pred             HHHHHHHH
Q 004829          495 KSYCENAL  502 (728)
Q Consensus       495 ~~~~~~al  502 (728)
                      +..|+++-
T Consensus       205 ~~~~~~~~  212 (217)
T 2pl2_A          205 ARAAALEH  212 (217)
T ss_dssp             --------
T ss_pred             HHHHHHHh
Confidence            99998764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.85  E-value=4.9e-21  Score=206.76  Aligned_cols=352  Identities=13%  Similarity=0.033  Sum_probs=247.5

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHcCCC
Q 004829          270 HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQI---ENSILCYTAGLEIQRQVLGET  346 (728)
Q Consensus       270 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~  346 (728)
                      ..+|..++..|++++|+.+|+++.+..       ++.    +++.||.+|...|++   ++|+.+|+++++.        
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-------~~~----A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------   67 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELG-------YSE----AQVGLADIQVGTRDPAQIKQAEATYRAAADT--------   67 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT-------CCT----GGGTCC---------------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCC-------CHH----HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------
Confidence            347899999999999999999987642       222    378899999999988   9999999999854        


Q ss_pred             ChHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          347 DHRVGETCRYVAEAHVQSL-----QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASM  421 (728)
Q Consensus       347 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  421 (728)
                         ...+++.+|.++...+     ++++|+.+|+++++.    ..+      .+++.||.+|...+...++...+.....
T Consensus        68 ---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~~------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~  134 (452)
T 3e4b_A           68 ---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN----GEG------NTLIPLAMLYLQYPHSFPNVNAQQQISQ  134 (452)
T ss_dssp             ------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT----TCS------SCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC----CCH------HHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence               3467889999777666     889999999999872    111      1488999999988765555444333332


Q ss_pred             HHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---ChHHHHHHH
Q 004829          422 SMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG---KLRDSKSYC  498 (728)
Q Consensus       422 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~  498 (728)
                      ...     .....+++.+|.+|...+.++++.............    .+|.   +++.||.+|...|   ++++|+.+|
T Consensus       135 a~~-----~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~  202 (452)
T 3e4b_A          135 WQA-----AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDI---CYVELATVYQKKQQPEQQAELLKQM  202 (452)
T ss_dssp             HHH-----HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTT---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHH-----CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHH---HHHHHHHHHHHcCCcccHHHHHHHH
Confidence            221     222467889999999999877776664433332221    1333   8899999999999   999999999


Q ss_pred             HHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH-H--HH
Q 004829          499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM----NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVM-Y--YM  571 (728)
Q Consensus       499 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~--~~  571 (728)
                      +++.+..         +..+..++++|.+|...    +++++|+.+|+++.   +..       ..+++++|.+ |  ..
T Consensus       203 ~~aa~~g---------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~-------~~a~~~Lg~~~~~~~~  263 (452)
T 3e4b_A          203 EAGVSRG---------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY-------PASWVSLAQLLYDFPE  263 (452)
T ss_dssp             HHHHHTT---------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS-------THHHHHHHHHHHHSGG
T ss_pred             HHHHHCC---------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC-------HHHHHHHHHHHHhCCC
Confidence            9999872         22355668899999765    79999999999987   333       4577899998 4  57


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829          572 TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY-----TINEAADLFEEARTILEKEYGPYHHDTLGVY  646 (728)
Q Consensus       572 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  646 (728)
                      .+++++|+.+|+++.+.        .  ...+++.||.+|. .|     ++++|+.+|+++. .       .+   ..++
T Consensus       264 ~~d~~~A~~~~~~Aa~~--------g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g~---~~A~  321 (452)
T 3e4b_A          264 LGDVEQMMKYLDNGRAA--------D--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------RE---VAAD  321 (452)
T ss_dssp             GCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------TC---HHHH
T ss_pred             CCCHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------CC---HHHH
Confidence            89999999999999854        1  3578999999998 55     9999999999987 2       13   4588


Q ss_pred             HHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHhhcc
Q 004829          647 SNLAGTYDA----MGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE----AGRVRNRKSRSLVTFLDSNS  717 (728)
Q Consensus       647 ~~La~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~ll~~~~  717 (728)
                      ++||.+|..    ..++++|+.+|+++.+          +....+.++||.+|..    ..++.+|. .+++...+...
T Consensus       322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~A~~~g~  389 (452)
T 3e4b_A          322 YYLGQIYRRGYLGKVYPQKALDHLLTAAR----------NGQNSADFAIAQLFSQGKGTKPDPLNAY-VFSQLAKAQDT  389 (452)
T ss_dssp             HHHHHHHHTTTTSSCCHHHHHHHHHHHHT----------TTCTTHHHHHHHHHHSCTTBCCCHHHHH-HHHHHHHTTCC
T ss_pred             HHHHHHHHCCCCCCcCHHHHHHHHHHHHh----------hChHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHCCC
Confidence            999999987    4499999999999987          2335678899999885    45888898 88877766543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.85  E-value=7.9e-19  Score=194.37  Aligned_cols=386  Identities=11%  Similarity=-0.004  Sum_probs=270.5

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004829          263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV  342 (728)
Q Consensus       263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  342 (728)
                      |....+|..++.. ...|++++|...|++++...     |...    ..|..++..+...|++++|...|++++..    
T Consensus        10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-----P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~----   75 (530)
T 2ooe_A           10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-----PSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMK----   75 (530)
T ss_dssp             TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTT----
T ss_pred             CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Confidence            4456678888874 78999999999999999876     4443    34999999999999999999999999988    


Q ss_pred             cCCCChHHHHHHHHHHH-HHHHhCCHHHHHH----HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH---------cCC
Q 004829          343 LGETDHRVGETCRYVAE-AHVQSLQFDEAEK----ICQMALDIHRENTSPASIEEAADRRLMGLICDS---------KGD  408 (728)
Q Consensus       343 ~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~---------~g~  408 (728)
                          .|. ...|..++. .....|+++.|.+    .|++++.......  ..   ..+|...+.....         .|+
T Consensus        76 ----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~--~~---~~~w~~~~~~~~~~~~~~~~~~~~~  145 (530)
T 2ooe_A           76 ----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI--MS---YQIWVDYINFLKGVEAVGSYAENQR  145 (530)
T ss_dssp             ----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST--TC---HHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred             ----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc--cc---HHHHHHHHHHHhcCCCcccHHHHhH
Confidence                564 446777764 4456688877766    6666665433221  11   2345555555544         789


Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH-------------HHhCCHHHHHHHHHHHHHHHHHhcCC----CC
Q 004829          409 YEAALEHYVLASMSMAANGHELDVASIDCSIGDAY-------------LSLARFDEAIFSYHKALTAFKSAKGE----NH  471 (728)
Q Consensus       409 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~----~~  471 (728)
                      ++.|...|++++..    +.. .....+...+...             ...+++..|...|.......... ..    -.
T Consensus       146 ~~~a~~~y~~al~~----P~~-~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l-~~~~~~~~  219 (530)
T 2ooe_A          146 ITAVRRVYQRGCVN----PMI-NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGL-DRNAPSVP  219 (530)
T ss_dssp             HHHHHHHHHHHTTS----CCT-THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHC-CSSSCCCC
T ss_pred             HHHHHHHHHHHHhc----hhh-hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-ccccccCC
Confidence            99999999998752    111 1122222222211             12456677776666533322221 11    01


Q ss_pred             H-------HHHHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH------
Q 004829          472 P-------AVASVFVRLADLYHKI----GKL----RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS------  530 (728)
Q Consensus       472 ~-------~~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~------  530 (728)
                      |       .....+..........    ++.    ..++..|++++...         |....+|..+|.++..      
T Consensus       220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~---------p~~~~~w~~~~~~~~~~~~~~~  290 (530)
T 2ooe_A          220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLA  290 (530)
T ss_dssp             CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhchhhh
Confidence            1       1123333333222221    232    47888999999984         3356788999999886      


Q ss_pred             -cCCHH-------HHHHHHHHHHH-HHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q 004829          531 -MNELE-------QAVKLLNKALK-IYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFG  601 (728)
Q Consensus       531 -~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  601 (728)
                       .|+++       +|+..|+++++ +.++.       ..++..+|.++...|++++|...|++++++     .+..  ..
T Consensus       291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~--~~  356 (530)
T 2ooe_A          291 EKGDMNNAKLFSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDID--PT  356 (530)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSC--HH
T ss_pred             hccchhhhhhhhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccC--ch
Confidence             79987       88999999886 43332       678889999999999999999999999985     1111  13


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829          602 IALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT-YDAMGRIDDAIEILEYVVGMREEKLGTA  680 (728)
Q Consensus       602 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~  680 (728)
                      .++..+|.++...|++++|..+|++|++.        .|.....+...+.+ +...|++++|..+|+++++..       
T Consensus       357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-------  421 (530)
T 2ooe_A          357 LVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-------  421 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-------
Confidence            58889999999999999999999999886        33333445555544 446999999999999999965       


Q ss_pred             ChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          681 NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       681 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                       |+...++..++.++...|+.++|. ..++.++...|.
T Consensus       422 -p~~~~~~~~~~~~~~~~g~~~~Ar-~~~~~al~~~~~  457 (530)
T 2ooe_A          422 -GDIPEYVLAYIDYLSHLNEDNNTR-VLFERVLTSGSL  457 (530)
T ss_dssp             -TTCHHHHHHHHHHHTTTTCHHHHH-HHHHHHHHSCCS
T ss_pred             -CCCHHHHHHHHHHHHhCCCHhhHH-HHHHHHHhccCC
Confidence             666778899999999999999999 999999887554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=9.8e-20  Score=184.22  Aligned_cols=278  Identities=11%  Similarity=0.071  Sum_probs=217.3

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 004829          359 EAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCS  438 (728)
Q Consensus       359 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  438 (728)
                      ...+..|+|..|+..+++.....+..       .......++.+|...|+++.|+..++.        . .+....++..
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~-------~~e~~~~l~r~yi~~g~~~~al~~~~~--------~-~~~~~~a~~~   70 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPER-------DVERDVFLYRAYLAQRKYGVVLDEIKP--------S-SAPELQAVRM   70 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHH-------HHHHHHHHHHHHHHTTCHHHHHHHSCT--------T-SCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchh-------hHHHHHHHHHHHHHCCCHHHHHHHhcc--------c-CChhHHHHHH
Confidence            34667999999999887754432222       123567789999999999999986643        1 3446778889


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHH
Q 004829          439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIA  518 (728)
Q Consensus       439 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  518 (728)
                      ++..+...+++++|+..+++++..      ..+|....+++.+|.++...|++++|+..+++     .         ...
T Consensus        71 la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~---------~~~  130 (291)
T 3mkr_A           71 FAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G---------DSL  130 (291)
T ss_dssp             HHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C---------CSH
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C---------CCH
Confidence            999999999999999999998764      11477778899999999999999999999987     1         134


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH
Q 004829          519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA  598 (728)
Q Consensus       519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  598 (728)
                      .++..+|.++..+|++++|+..|+++++..++.     ........+..++...|++++|+.+|+++++.        .+
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~p  197 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------CS  197 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------SC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------CC
Confidence            578899999999999999999999999885432     11111111223334558999999999999987        22


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHc
Q 004829          599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD-AIEILEYVVGMREEKL  677 (728)
Q Consensus       599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~-A~~~~~~al~~~~~~~  677 (728)
                      ....+++.+|.++..+|++++|+..|++++.+        +|+...++.++|.++...|++.+ +..++++++++.    
T Consensus       198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~----  265 (291)
T 3mkr_A          198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH----  265 (291)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----
Confidence            24578999999999999999999999999999        88888899999999999999976 568999999853    


Q ss_pred             CCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829          678 GTANPDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       678 ~~~~p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                       |+||...+       +..+.+.++++.
T Consensus       266 -P~~~~~~d-------~~~~~~~fd~~~  285 (291)
T 3mkr_A          266 -RSHPFIKE-------YRAKENDFDRLV  285 (291)
T ss_dssp             -TTCHHHHH-------HHHHHHHHHHHH
T ss_pred             -CCChHHHH-------HHHHHHHHHHHH
Confidence             66665543       455566667666

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=7.3e-19  Score=177.80  Aligned_cols=279  Identities=10%  Similarity=0.043  Sum_probs=215.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHh
Q 004829          229 TREMISSGENPQKALELAKRAMKSFEICANGKPSLEQ-VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALA  307 (728)
Q Consensus       229 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  307 (728)
                      .+.++..| +|++|+..+++...         .+|+. ..+...++.+|..+|++++|+..++..          ..+  
T Consensus         6 ~~~~~~~g-~y~~ai~~~~~~~~---------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----------~~~--   63 (291)
T 3mkr_A            6 VKNAFYIG-SYQQCINEAQRVKP---------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----------SAP--   63 (291)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHSCC---------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----------SCH--
T ss_pred             HHHHHHHH-HHHHHHHHHHhccc---------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----------CCh--
Confidence            45677786 89999999887643         22433 346677899999999999999866441          111  


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829          308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP  387 (728)
Q Consensus       308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  387 (728)
                      ...++..++..+...+++++|+..+++++..      ..+|....+++.+|.++...|++++|+.++++     +     
T Consensus        64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~-----  127 (291)
T 3mkr_A           64 ELQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G-----  127 (291)
T ss_dssp             HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C-----
T ss_pred             hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C-----
Confidence            3456888999999999999999999988764      11477778899999999999999999999987     1     


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIG--DAYLSLARFDEAIFSYHKALTAFKS  465 (728)
Q Consensus       388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~  465 (728)
                      ..   ..++..+|.++...|++++|+..|++++...      |.........+  .++...|++++|+..|+++++.   
T Consensus       128 ~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---  195 (291)
T 3mkr_A          128 DS---LECMAMTVQILLKLDRLDLARKELKKMQDQD------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---  195 (291)
T ss_dssp             CS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---
T ss_pred             CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---
Confidence            22   3468899999999999999999999988762      22222221122  3334458999999999999998   


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHH
Q 004829          466 AKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQ-AVKLLNKA  544 (728)
Q Consensus       466 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a  544 (728)
                           .|....+++.+|.++..+|++++|+..|++++.+         .|..+.++.++|.++...|++.+ +..+++++
T Consensus       196 -----~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~  261 (291)
T 3mkr_A          196 -----CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQL  261 (291)
T ss_dssp             -----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                 7777889999999999999999999999999999         34466789999999999999976 57899999


Q ss_pred             HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829          545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTL  582 (728)
Q Consensus       545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  582 (728)
                      +++.|+.+           .+..+..+.+.|+++..-|
T Consensus       262 ~~~~P~~~-----------~~~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          262 KDAHRSHP-----------FIKEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHCTTCH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCh-----------HHHHHHHHHHHHHHHHHHc
Confidence            99987762           2334455555555554433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=5.3e-19  Score=179.38  Aligned_cols=250  Identities=14%  Similarity=0.098  Sum_probs=199.3

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 004829          366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS  445 (728)
Q Consensus       366 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  445 (728)
                      ++++|+.+|.++                      |.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..
T Consensus        32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~   89 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS   89 (292)
T ss_dssp             HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            478888777776                      4467789999999999999999988888878889999999999999


Q ss_pred             hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Q 004829          446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI-GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI  524 (728)
Q Consensus       446 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  524 (728)
                      +|++++|+.+|++++.+....  ++....+.++.++|.+|... |++++|+.+|++++.+.....   +......++..+
T Consensus        90 ~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~---~~~~~~~~~~~l  164 (292)
T 1qqe_A           90 GGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ---SVALSNKCFIKC  164 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC---ChHHHHHHHHHH
Confidence            999999999999999998765  33455678999999999996 999999999999999976532   233456789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Q 004829          525 AAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIAL  604 (728)
Q Consensus       525 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  604 (728)
                      |.++..+|++++|+.+|++++.+.+...........++..+|.++..+|++++|+.+|++++.+.......   .....+
T Consensus       165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~~~l  241 (292)
T 1qqe_A          165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS---RESNFL  241 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc---HHHHHH
Confidence            99999999999999999999998776533223455678899999999999999999999999875443321   113456


Q ss_pred             HHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004829          605 NQMGLACV--QRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY  653 (728)
Q Consensus       605 ~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~  653 (728)
                      ..++..+.  ..+++++|+..|.+++.+        +|....++..+-..+
T Consensus       242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence            66677665  457899999999888777        777766666555444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.82  E-value=8.7e-19  Score=177.79  Aligned_cols=250  Identities=13%  Similarity=0.097  Sum_probs=194.5

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 004829          408 DYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK  487 (728)
Q Consensus       408 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  487 (728)
                      ++++|+..|.++                    |.+|...|++++|+.+|.+++++....  ++.+..+.++.++|.+|..
T Consensus        32 ~~~~A~~~~~~a--------------------~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~   89 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------------ATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKS   89 (292)
T ss_dssp             HHHHHHHHHHHH--------------------HHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH
Confidence            488888888765                    456888999999999999999998775  3455678899999999999


Q ss_pred             cCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 004829          488 IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM-NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG  566 (728)
Q Consensus       488 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  566 (728)
                      +|++++|+.+|++++.+.....   +....+.++.++|.+|... |++++|+.+|++++++.+.. +.......++.++|
T Consensus        90 ~g~~~~A~~~~~~Al~l~~~~g---~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg  165 (292)
T 1qqe_A           90 GGNSVNAVDSLENAIQIFTHRG---QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCA  165 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence            9999999999999999987643   3455678999999999996 99999999999999999875 33334467789999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829          567 VMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY  646 (728)
Q Consensus       567 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  646 (728)
                      .+|..+|++++|+.+|++++.+....... ......++..+|.++..+|++++|+.+|++++.+.....   .......+
T Consensus       166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l  241 (292)
T 1qqe_A          166 DLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFL  241 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTSSCTTT-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHH
Confidence            99999999999999999999874322111 112345789999999999999999999999998732211   01112245


Q ss_pred             HHHHHHHH--HcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829          647 SNLAGTYD--AMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL  695 (728)
Q Consensus       647 ~~La~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  695 (728)
                      ..++..+.  ..+++++|+..|++++.        .+|.....+..+-..+
T Consensus       242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~--------l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          242 KSLIDAVNEGDSEQLSEHCKEFDNFMR--------LDKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHTTSSC--------CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhccCCc--------cHHHHHHHHHHHHHHh
Confidence            56667665  45778888888877765        4577766666665554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.82  E-value=1.9e-17  Score=189.22  Aligned_cols=360  Identities=13%  Similarity=0.101  Sum_probs=204.1

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH-------------------------HHHHHHHcC
Q 004829          226 LKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHV-------------------------LAAIHCSLG  280 (728)
Q Consensus       226 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~-------------------------la~~~~~~g  280 (728)
                      -..++.+...| ++.+|++.|++++-- ....  ..+...-. +..                         +|.++...|
T Consensus       989 s~~vKaf~~ag-lp~EaieLLEKivl~-~s~f--s~n~~Lqn-lLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A          989 SVTVKAFMTAD-LPNELIELLEKIVLD-NSVF--SEHRNLQN-LLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHcC-CCcc--cccHHHHH-HHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence            34566777886 999999999999822 1100  01111111 111                         255555555


Q ss_pred             ChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 004829          281 QYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEA  360 (728)
Q Consensus       281 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  360 (728)
                      .|++|..+|+++...                ...+...+...+++++|+++++++             ....+|..+|.+
T Consensus      1064 lyEEAf~IYkKa~~~----------------~~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsqLAKA 1114 (1630)
T 1xi4_A         1064 LFEEAFAIFRKFDVN----------------TSAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQLAKA 1114 (1630)
T ss_pred             CHHHHHHHHHHcCCH----------------HHHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHHHHHH
Confidence            555555555554211                011122222444445444444432             223455566666


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 004829          361 HVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIG  440 (728)
Q Consensus       361 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  440 (728)
                      +...|++++|+..|.++       .+      ...+..+|.++...|++++|+++|..|......       ..+...+|
T Consensus      1115 ql~~G~~kEAIdsYiKA-------dD------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-------~~Idt~La 1174 (1630)
T 1xi4_A         1115 QLQKGMVKEAIDSYIKA-------DD------PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-------SYVETELI 1174 (1630)
T ss_pred             HHhCCCHHHHHHHHHhc-------CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-------ccccHHHH
Confidence            66666666666666554       00      123555666666666666666666655443210       01112355


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHH
Q 004829          441 DAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASG  520 (728)
Q Consensus       441 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  520 (728)
                      .+|.+++++++ ++.|.   .         .+.. ..+..+|..+...|+|++|..+|.++                 ..
T Consensus      1175 faYAKl~rlee-le~fI---~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-----------------~n 1223 (1630)
T 1xi4_A         1175 FALAKTNRLAE-LEEFI---N---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------SN 1223 (1630)
T ss_pred             HHHHhhcCHHH-HHHHH---h---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-----------------hH
Confidence            56666655553 22221   1         1111 23445666666666666666666653                 13


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHH
Q 004829          521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALF  600 (728)
Q Consensus       521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  600 (728)
                      |..++.+|..+|++++|++.+++|..            ..+|...+.++...|+|..|..+... +..           .
T Consensus      1224 y~rLA~tLvkLge~q~AIEaarKA~n------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv-----------~ 1279 (1630)
T 1xi4_A         1224 FGRLASTLVHLGEYQAAVDGARKANS------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV-----------H 1279 (1630)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhCC------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc-----------C
Confidence            55566666666666666666666521            13455556666666666666655543 211           1


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHcC
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEYVVGMREEKLG  678 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~al~~~~~~~~  678 (728)
                      +..+..++..|...|.+++|+.++++++.+        ++.....+..||.+|.+  -++..+++++|...+.+-+-+  
T Consensus      1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~-- 1349 (1630)
T 1xi4_A         1280 ADELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL-- 1349 (1630)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh--
Confidence            345667888888999999999999999888        66667777777777765  456677777777666532110  


Q ss_pred             CCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829          679 TANPDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       679 ~~~p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                       .--+....|..+..+|.+-|+++.|+
T Consensus      1350 -r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1350 -RAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             -HHHHHHHHHHHHHHHHHhcccHHHHH
Confidence             01255677889999999999999999

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.82  E-value=2.6e-18  Score=172.57  Aligned_cols=226  Identities=15%  Similarity=0.199  Sum_probs=196.2

Q ss_pred             CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhHHHHHHHHhh
Q 004829          218 NPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCS----LGQYNEAIPVLERSV  293 (728)
Q Consensus       218 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al  293 (728)
                      +|..+.+++.+|..++..| ++++|+.+|++++.           +....+++.+|.+|..    .+++++|+.+|++++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~-----------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~   69 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEK-DFTQAKKYFEKACD-----------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   69 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence            4567889999999999997 99999999999987           1224678899999999    999999999999998


Q ss_pred             hhhhhhcCCchhHhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----hC
Q 004829          294 EIPVLEDGQDHALAKFAGCMQLGDTYAM----LGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ----SL  365 (728)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g  365 (728)
                      ++.       +    ..+++.+|.+|..    .+++++|+.+|+++++.          ....++..+|.+|..    .+
T Consensus        70 ~~~-------~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~  128 (273)
T 1ouv_A           70 DLN-------Y----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTR  128 (273)
T ss_dssp             HTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCC
T ss_pred             HCC-------C----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCccc
Confidence            762       2    2358999999999    99999999999999876          245789999999999    99


Q ss_pred             CHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004829          366 QFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS----KGDYEAALEHYVLASMSMAANGHELDVASIDCSIGD  441 (728)
Q Consensus       366 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  441 (728)
                      ++++|+.+|+++++..          ...++..+|.++..    .+++++|+.+|++++..        ....++..+|.
T Consensus       129 ~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~  190 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNAGN  190 (273)
T ss_dssp             CHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence            9999999999999742          13468899999999    99999999999999854        23578899999


Q ss_pred             HHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004829          442 AYLS----LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK----IGKLRDSKSYCENALKI  504 (728)
Q Consensus       442 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  504 (728)
                      +|..    .+++++|+.+|+++++.        .+  ..++..+|.+|..    .+++++|+.+|+++++.
T Consensus       191 ~~~~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          191 MYHHGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            9999    99999999999999986        33  5678999999999    99999999999999998

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.82  E-value=1.7e-19  Score=177.43  Aligned_cols=221  Identities=15%  Similarity=0.167  Sum_probs=170.8

Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829          431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH  510 (728)
Q Consensus       431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  510 (728)
                      ..+..+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++...     
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----   87 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALELD-----   87 (243)
T ss_dssp             ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence            44667889999999999999999999999986        67778899999999999999999999999999983     


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR  590 (728)
Q Consensus       511 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  590 (728)
                          +....++..+|.++...|++++|+.+|+++++..+..       ..++..+|.++...|++++|+.++++++..  
T Consensus        88 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--  154 (243)
T 2q7f_A           88 ----SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL--  154 (243)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred             ----CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence                2346788999999999999999999999999986544       467889999999999999999999999987  


Q ss_pred             HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829          591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV  670 (728)
Q Consensus       591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al  670 (728)
                            .+....++..+|.++...|++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|++++
T Consensus       155 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  220 (243)
T 2q7f_A          155 ------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAI  220 (243)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence                  2223568899999999999999999999999998        67777799999999999999999999999999


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829          671 GMREEKLGTANPDVEDEKRRLAELLKEAG  699 (728)
Q Consensus       671 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g  699 (728)
                      ++.        |+...++..++.+....|
T Consensus       221 ~~~--------p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          221 DIQ--------PDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             HHC--------TTCHHHHHHHTC------
T ss_pred             ccC--------cchHHHHHHHHHHHhhcc
Confidence            853        666666766666655443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.82  E-value=5.7e-18  Score=170.05  Aligned_cols=222  Identities=18%  Similarity=0.169  Sum_probs=196.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcC
Q 004829          393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS----LARFDEAIFSYHKALTAFKSAKG  468 (728)
Q Consensus       393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~  468 (728)
                      +.+++.+|.++...|++++|+.+|++++.        +....+++.+|.+|..    .+++++|+.+|+++++.      
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------   71 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------   71 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------
Confidence            45688999999999999999999999885        3335789999999999    99999999999999886      


Q ss_pred             CCCHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHH
Q 004829          469 ENHPAVASVFVRLADLYHK----IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS----MNELEQAVKL  540 (728)
Q Consensus       469 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  540 (728)
                        .  ...++..+|.+|..    .+++++|+.+|+++++..           ...++..+|.+|..    .+++++|+.+
T Consensus        72 --~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~  136 (273)
T 1ouv_A           72 --N--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----------YAEGCASLGGIYHDGKVVTRDFKKAVEY  136 (273)
T ss_dssp             --T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             --C--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----------CccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence              2  46788999999999    999999999999999861           35688999999999    9999999999


Q ss_pred             HHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH---
Q 004829          541 LNKALKIYGKTPGQQSTIAGIEAQMGVMYYM----TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ---  613 (728)
Q Consensus       541 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---  613 (728)
                      |+++++..         ...++..+|.+|..    .+++++|+.+|+++++.       .+   ..++..+|.+|..   
T Consensus       137 ~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~  197 (273)
T 1ouv_A          137 FTKACDLN---------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGNMYHHGEG  197 (273)
T ss_dssp             HHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTCS
T ss_pred             HHHHHhcC---------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCC
Confidence            99999752         14577899999999    99999999999999875       12   4688999999999   


Q ss_pred             -cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004829          614 -RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA----MGRIDDAIEILEYVVGM  672 (728)
Q Consensus       614 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~al~~  672 (728)
                       .+++++|+.+|+++++.        .+  ..+++.||.+|..    .+++++|+.+|++++++
T Consensus       198 ~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          198 ATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence             99999999999999986        33  5588999999999    99999999999999985

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.81  E-value=8.8e-17  Score=183.72  Aligned_cols=348  Identities=16%  Similarity=0.131  Sum_probs=263.0

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHh
Q 004829          228 QTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALA  307 (728)
Q Consensus       228 ~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  307 (728)
                      .|..+...| .+++|..+|+++-..           ..     .+...+...+++++|+++++++..             
T Consensus      1055 IA~Iai~lg-lyEEAf~IYkKa~~~-----------~~-----A~~VLie~i~nldrAiE~Aervn~------------- 1104 (1630)
T 1xi4_A         1055 IANIAISNE-LFEEAFAIFRKFDVN-----------TS-----AVQVLIEHIGNLDRAYEFAERCNE------------- 1104 (1630)
T ss_pred             HHHHHHhCC-CHHHHHHHHHHcCCH-----------HH-----HHHHHHHHHhhHHHHHHHHHhcCC-------------
Confidence            488888886 899999999987321           11     123334478899999999987532             


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Q 004829          308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP  387 (728)
Q Consensus       308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  387 (728)
                       ..+|+.+|.++...|++++|+..|.++             .....+..++.++.+.|+|++|+++|..+.+..+...  
T Consensus      1105 -p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-- 1168 (1630)
T 1xi4_A         1105 -PAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-- 1168 (1630)
T ss_pred             -HHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--
Confidence             235999999999999999999999775             3346778899999999999999999999987653321  


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829          388 ASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK  467 (728)
Q Consensus       388 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  467 (728)
                             +...+|.+|.+.+++++ ++.|..          .+.. ..+..+|..+...|+|++|..+|.++        
T Consensus      1169 -------Idt~LafaYAKl~rlee-le~fI~----------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A         1169 -------VETELIFALAKTNRLAE-LEEFIN----------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred             -------ccHHHHHHHHhhcCHHH-HHHHHh----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence                   13358999999999885 444421          2233 35667999999999999999999986        


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          468 GENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI  547 (728)
Q Consensus       468 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  547 (728)
                              ..|..+|.+|.++|++++|++.+++|..              ..+|...+.++...|+|..|..+... +..
T Consensus      1222 --------~ny~rLA~tLvkLge~q~AIEaarKA~n--------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv 1278 (1630)
T 1xi4_A         1222 --------SNFGRLASTLVHLGEYQAAVDGARKANS--------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV 1278 (1630)
T ss_pred             --------hHHHHHHHHHHHhCCHHHHHHHHHHhCC--------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc
Confidence                    2578899999999999999999998832              36788899999999999999987763 322


Q ss_pred             HhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 004829          548 YGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR--YTINEAADLFE  625 (728)
Q Consensus       548 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~  625 (728)
                      .          +..+..++..|...|.|++|+.++++++.+        .+.....+..+|.+|.+-  ++..+++++|.
T Consensus      1279 ~----------~deLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1279 H----------ADELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred             C----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            2          234457899999999999999999999977        344456777788777764  47778888888


Q ss_pred             HHHHHHHHhcCCCCh-----hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------HHHHcCCCChHHHHHHHHHHHH
Q 004829          626 EARTILEKEYGPYHH-----DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM------REEKLGTANPDVEDEKRRLAEL  694 (728)
Q Consensus       626 ~al~~~~~~~~~~~~-----~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~p~~~~~~~~La~~  694 (728)
                      ..+.+        .+     +....|..+..+|.+-|+++.|+..+-+....      +...+  .++...+.+++....
T Consensus      1341 ~rini--------~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i--~kv~n~elyykai~F 1410 (1630)
T 1xi4_A         1341 SRVNI--------PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII--TKVANVELYYRAIQF 1410 (1630)
T ss_pred             Hhccc--------chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh--cccccHHHHHHHHHH
Confidence            77765        33     45667889999999999999999554443211      11111  235567778887777


Q ss_pred             HHHhC
Q 004829          695 LKEAG  699 (728)
Q Consensus       695 ~~~~g  699 (728)
                      |...+
T Consensus      1411 yl~~~ 1415 (1630)
T 1xi4_A         1411 YLEFK 1415 (1630)
T ss_pred             HHhhC
Confidence            77655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.81  E-value=5.3e-19  Score=173.82  Aligned_cols=220  Identities=15%  Similarity=0.152  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       392 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                      .+..++.+|.++...|++++|+.+|++++..      .+....++..+|.++...|++++|+.+|++++..        .
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~   87 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE------NKEDAIPYINFANLLSSVNELERALAFYDKALEL--------D   87 (243)
T ss_dssp             --------------------CCTTHHHHHTT------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Confidence            3456889999999999999999999998753      4566789999999999999999999999999998        6


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      |....++..+|.++...|++++|+.+++++++....         ...++..+|.++...|++++|+.++++++...+..
T Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  158 (243)
T 2q7f_A           88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME---------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND  158 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC---------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            777889999999999999999999999999998432         34678999999999999999999999999886544


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL  631 (728)
Q Consensus       552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  631 (728)
                             ..++..+|.++...|++++|+.++++++..        .+....++..+|.++...|++++|+.+|++++++ 
T Consensus       159 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-  222 (243)
T 2q7f_A          159 -------TEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI-  222 (243)
T ss_dssp             -------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-
T ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-
Confidence                   567889999999999999999999999987        2223568999999999999999999999999998 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcC
Q 004829          632 EKEYGPYHHDTLGVYSNLAGTYDAMG  657 (728)
Q Consensus       632 ~~~~~~~~~~~~~~~~~La~~~~~~g  657 (728)
                             .|+...++..++.+....+
T Consensus       223 -------~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          223 -------QPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             -------CTTCHHHHHHHTC------
T ss_pred             -------CcchHHHHHHHHHHHhhcc
Confidence                   7777777777776655444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.81  E-value=9e-19  Score=175.77  Aligned_cols=258  Identities=13%  Similarity=0.001  Sum_probs=203.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004829          400 GLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV  479 (728)
Q Consensus       400 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  479 (728)
                      +..+...|++++|+..|.+++...  ...++....++..+|.++...|++++|+.+|++++.+        .|....++.
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~   81 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFN   81 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHH
Confidence            334455688999999999987541  1234678899999999999999999999999999998        777788999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHH
Q 004829          480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIA  559 (728)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  559 (728)
                      .+|.+|...|++++|+.+|++++.+.         +....++..+|.+|...|++++|+.+|++++++.+..       .
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~  145 (275)
T 1xnf_A           82 YLGIYLTQAGNFDAAYEAFDSVLELD---------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-------P  145 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcC---------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------h
Confidence            99999999999999999999999983         2235789999999999999999999999999986554       1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYH  639 (728)
Q Consensus       560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  639 (728)
                      ..... ..++...|++++|+.++++++...    +...     ....++.++...++.++|+..+++++......    .
T Consensus       146 ~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~  211 (275)
T 1xnf_A          146 FRSLW-LYLAEQKLDEKQAKEVLKQHFEKS----DKEQ-----WGWNIVEFYLGNISEQTLMERLKADATDNTSL----A  211 (275)
T ss_dssp             HHHHH-HHHHHHHHCHHHHHHHHHHHHHHS----CCCS-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----H
T ss_pred             HHHHH-HHHHHHhcCHHHHHHHHHHHHhcC----Ccch-----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----c
Confidence            22222 334467799999999999998762    1111     22347778888999999999999988763332    3


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004829          640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSL  709 (728)
Q Consensus       640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l  709 (728)
                      +....++..+|.+|...|++++|+.+|++++.+        +|...   ...+.++...|++++|+ ..+
T Consensus       212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~-~~~  269 (275)
T 1xnf_A          212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQ-DDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC-----
T ss_pred             ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhH-HHH
Confidence            345789999999999999999999999999984        24332   23367888999999999 443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.80  E-value=2e-17  Score=169.11  Aligned_cols=245  Identities=13%  Similarity=0.132  Sum_probs=193.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004829          406 KGDYEAALEHYVLASMSMAA-----NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR  480 (728)
Q Consensus       406 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  480 (728)
                      .|++++|.++++++......     .++.......+...|.+|...|++++|+.+|.+++++....  .+....+.++.+
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~   81 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQ   81 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence            45667777777777665432     12333344556667889999999999999999999998876  345567889999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829          481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG  560 (728)
Q Consensus       481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  560 (728)
                      +|.+|..+|++++|+.+|++++.++....   +....+.++.++|.+|.. |++++|+.+|++++.+.+.. +.......
T Consensus        82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g---~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~~~~~~~~  156 (307)
T 2ifu_A           82 AGMMLKDLQRMPEAVQYIEKASVMYVENG---TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-ERLRQAAE  156 (307)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-CChhHHHH
Confidence            99999999999999999999999987754   345578899999999999 99999999999999999875 44455678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829          561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH  640 (728)
Q Consensus       561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  640 (728)
                      ++.++|.+|..+|++++|+.+|++++.+......  ......++..+|.++..+|++++|+.+|++++ +....   ...
T Consensus       157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~---~~~  230 (307)
T 2ifu_A          157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF---SGS  230 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---TTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---CCC
Confidence            8999999999999999999999999999877654  33456688999999999999999999999999 62110   011


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHH
Q 004829          641 DTLGVYSNLAGTYDAMGRIDDAIE  664 (728)
Q Consensus       641 ~~~~~~~~La~~~~~~g~~~~A~~  664 (728)
                      .....+..++..+ ..|+.+.+..
T Consensus       231 ~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          231 EDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhcCHHHHHH
Confidence            2334556666666 5677655544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.80  E-value=4.9e-18  Score=168.13  Aligned_cols=204  Identities=12%  Similarity=0.022  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG  511 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  511 (728)
                      .+.++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++...      
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------  101 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD------  101 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------
Confidence            4788999999999999999999999999988        67778889999999999999999999999999883      


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT  591 (728)
Q Consensus       512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  591 (728)
                         +....++..+|.++...|++++|+.+|++++.     .+..+....++..+|.++...|++++|+.+|++++..   
T Consensus       102 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---  170 (252)
T 2ho1_A          102 ---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---  170 (252)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             ---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence               22456889999999999999999999999886     1233445678889999999999999999999999887   


Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                           .+....++..+|.++...|++++|+.+|++++..        .|....++..++.++...|++++|..+++++++
T Consensus       171 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          171 -----NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             -----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence                 2223568899999999999999999999999886        666677889999999999999999999999988


Q ss_pred             HH
Q 004829          672 MR  673 (728)
Q Consensus       672 ~~  673 (728)
                      +.
T Consensus       238 ~~  239 (252)
T 2ho1_A          238 LY  239 (252)
T ss_dssp             HC
T ss_pred             HC
Confidence            53

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.79  E-value=1.7e-17  Score=160.72  Aligned_cols=206  Identities=15%  Similarity=0.114  Sum_probs=178.3

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      .+....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++...   
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---   72 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK---   72 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Confidence            5677888999999999999999999999999998        67778889999999999999999999999999983   


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          509 NHGIPSEEIASGLIDIAAIYQSM-NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS  587 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  587 (728)
                            +....++..+|.++... |++++|+.++++++. .    +..+....++..+|.++...|++++|+.+++++++
T Consensus        73 ------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  141 (225)
T 2vq2_A           73 ------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D----PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA  141 (225)
T ss_dssp             ------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S----TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                  22456789999999999 999999999999987 1    23344567888999999999999999999999988


Q ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829          588 KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH-DTLGVYSNLAGTYDAMGRIDDAIEIL  666 (728)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~La~~~~~~g~~~~A~~~~  666 (728)
                      .        .+....++..+|.++...|++++|+.+|++++..        .| ....++..++.++...|++++|..++
T Consensus       142 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  205 (225)
T 2vq2_A          142 A--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAYEYE  205 (225)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             h--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            7        2223578899999999999999999999999987        55 55567788899999999999999999


Q ss_pred             HHHHHH
Q 004829          667 EYVVGM  672 (728)
Q Consensus       667 ~~al~~  672 (728)
                      +.+...
T Consensus       206 ~~~~~~  211 (225)
T 2vq2_A          206 AQLQAN  211 (225)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.79  E-value=5.8e-18  Score=158.84  Aligned_cols=167  Identities=23%  Similarity=0.288  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG  511 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  511 (728)
                      .+.+|+++|.+|..+|++++|+.+|++++++        +|....++..+|.+|...|++++|+..+.+++...      
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------   69 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------   69 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence            3568999999999999999999999999999        88889999999999999999999999999999983      


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT  591 (728)
Q Consensus       512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  591 (728)
                         +....++..+|.++...++++.|...+.+++.+.+..       ..++..+|.+|..+|++++|+.+|++++++   
T Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---  136 (184)
T 3vtx_A           70 ---TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTISI---  136 (184)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             ---chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence               2345778899999999999999999999999986655       567889999999999999999999999988   


Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                           .+....++..+|.+|..+|++++|+.+|++++++
T Consensus       137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence                 3445689999999999999999999999999998

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.79  E-value=9e-18  Score=166.19  Aligned_cols=211  Identities=16%  Similarity=0.124  Sum_probs=185.1

Q ss_pred             CHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829          471 HPAV-ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG  549 (728)
Q Consensus       471 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  549 (728)
                      .|.. +.++..+|.++...|++++|+.+|++++...         +....++..+|.++...|++++|+.+|+++++..+
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  102 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID---------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS  102 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            5554 8899999999999999999999999999983         23467899999999999999999999999998855


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          550 KTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART  629 (728)
Q Consensus       550 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  629 (728)
                      ..       ..++..+|.+|...|++++|+.+|++++.      ....+....++..+|.++...|++++|+.+|++++.
T Consensus       103 ~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (252)
T 2ho1_A          103 RN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR  169 (252)
T ss_dssp             TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             Cc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            43       56788999999999999999999999986      111344568899999999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004829          630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSL  709 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l  709 (728)
                      .        .|....++..+|.+|...|++++|+.+|++++..        .|....++..++.++...|++++|. ..+
T Consensus       170 ~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~-~~~  232 (252)
T 2ho1_A          170 L--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAA-SYG  232 (252)
T ss_dssp             H--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred             c--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHH-HHH
Confidence            8        6666778999999999999999999999999873        4566778899999999999999999 999


Q ss_pred             HHHHhhccccc
Q 004829          710 VTFLDSNSQNL  720 (728)
Q Consensus       710 ~~ll~~~~~~~  720 (728)
                      +.+++..|...
T Consensus       233 ~~~~~~~p~~~  243 (252)
T 2ho1_A          233 LQLKRLYPGSL  243 (252)
T ss_dssp             HHHHHHCTTSH
T ss_pred             HHHHHHCCCCH
Confidence            99999887753

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.79  E-value=2.7e-18  Score=172.20  Aligned_cols=258  Identities=13%  Similarity=0.025  Sum_probs=203.3

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 004829          358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDC  437 (728)
Q Consensus       358 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  437 (728)
                      +..+...|++++|+..|++++...+    ...+..+.++..+|.++...|++++|+.+|++++..      .|....++.
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~   81 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRA----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFN   81 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhccc----ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc------CCCcHHHHH
Confidence            3344456889999999999987521    123455678999999999999999999999999876      455678999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHH
Q 004829          438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEI  517 (728)
Q Consensus       438 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  517 (728)
                      .+|.++...|++++|+.+|++++.+        .|....++..+|.+|...|++++|+.+|++++.+...      .+  
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~--  145 (275)
T 1xnf_A           82 YLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN------DP--  145 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH--
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------Ch--
Confidence            9999999999999999999999998        7777889999999999999999999999999998422      22  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829          518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS  597 (728)
Q Consensus       518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  597 (728)
                       .....+ .++...|++++|+..+.+++...+..   .     ....++.++...+++++|+..+++++......    .
T Consensus       146 -~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~  211 (275)
T 1xnf_A          146 -FRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDKE---Q-----WGWNIVEFYLGNISEQTLMERLKADATDNTSL----A  211 (275)
T ss_dssp             -HHHHHH-HHHHHHHCHHHHHHHHHHHHHHSCCC---S-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----H
T ss_pred             -HHHHHH-HHHHHhcCHHHHHHHHHHHHhcCCcc---h-----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----c
Confidence             222223 34466799999999999999875543   1     12357788888999999999999987653321    1


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829          598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEIL  666 (728)
Q Consensus       598 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~  666 (728)
                      +....++..+|.++...|++++|+.+|++++.+        +|...   ...+.++..+|++++|+..|
T Consensus       212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred             ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence            233678999999999999999999999999987        55432   33477888899999998887

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.79  E-value=1.8e-18  Score=187.93  Aligned_cols=202  Identities=13%  Similarity=0.097  Sum_probs=183.8

Q ss_pred             CCChhHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          427 GHELDVASIDCSIGDAYLSLARF-DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY  505 (728)
Q Consensus       427 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  505 (728)
                      ...+..+.+++.+|.++...|++ ++|+.+|++++++        .|....++..+|.+|...|++++|+.+|++++++.
T Consensus        96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  167 (474)
T 4abn_A           96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC  167 (474)
T ss_dssp             TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            34567788999999999999999 9999999999998        88888999999999999999999999999999872


Q ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHc----
Q 004829          506 GKPNHGIPSEEIASGLIDIAAIYQSM---------NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMT----  572 (728)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----  572 (728)
                               |. ..++..+|.++...         |++++|+.+|++++++.+..       ..++..+|.+|..+    
T Consensus       168 ---------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~  230 (474)
T 4abn_A          168 ---------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-------GRSWYILGNAYLSLYFNT  230 (474)
T ss_dssp             ---------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHT
T ss_pred             ---------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHhh
Confidence                     22 47899999999999         99999999999999987655       57889999999999    


Q ss_pred             ----CCHHHHHHHHHHHHHHHHHhCCCCcH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004829          573 ----GNYSDSYNTLKSAISKFRTSGEKKSA---LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV  645 (728)
Q Consensus       573 ----g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  645 (728)
                          |++++|+.+|++++++        .+   ....+++.+|.+|...|++++|+.+|++++++        +|+...+
T Consensus       231 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a  294 (474)
T 4abn_A          231 GQNPKISQQALSAYAQAEKV--------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEP  294 (474)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             ccccchHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence                9999999999999998        33   56789999999999999999999999999999        8888889


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHH
Q 004829          646 YSNLAGTYDAMGRIDDAIEILEYV  669 (728)
Q Consensus       646 ~~~La~~~~~~g~~~~A~~~~~~a  669 (728)
                      +..++.++..+|++++|+..+.+.
T Consensus       295 ~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          295 QQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999877654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.79  E-value=8.1e-18  Score=157.83  Aligned_cols=167  Identities=16%  Similarity=0.276  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 004829          474 VASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPG  553 (728)
Q Consensus       474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  553 (728)
                      .+.+|+++|.+|...|++++|+.+|++++++         .|....++..+|.+|...|++++|+..+.+++...+..  
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS--   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--
Confidence            3568999999999999999999999999999         34467889999999999999999999999999876554  


Q ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          554 QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       554 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                           ..++..+|.++...++++.|...+.+++.+        .+....++..+|.++..+|++++|+..|++++++   
T Consensus        73 -----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---  136 (184)
T 3vtx_A           73 -----AEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---  136 (184)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence                 567889999999999999999999999987        3334578999999999999999999999999999   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                           +|....++.++|.+|..+|++++|+.+|++++++
T Consensus       137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence                 8888899999999999999999999999999984

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.79  E-value=2.6e-17  Score=159.36  Aligned_cols=211  Identities=17%  Similarity=0.103  Sum_probs=184.2

Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .|....++..+|.++...|++++|+.++++++...         +....++..+|.++...|++++|+.+|++++...+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~   74 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD   74 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            67788999999999999999999999999999983         234678899999999999999999999999988654


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMT-GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART  629 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  629 (728)
                      .       ..++..+|.++... |++++|+.++++++.    .  ...+....++..+|.++...|++++|+.+|++++.
T Consensus        75 ~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  141 (225)
T 2vq2_A           75 S-------AEINNNYGWFLCGRLNRPAESMAYFDKALA----D--PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA  141 (225)
T ss_dssp             C-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----S--TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             C-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----C--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3       56788999999999 999999999999987    1  11233467899999999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHhCChhHHHHHH
Q 004829          630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP-DVEDEKRRLAELLKEAGRVRNRKSRS  708 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~  708 (728)
                      .        .|....++..+|.++...|++++|+.++++++.+.        | .....+..++.++...|+.++|. .+
T Consensus       142 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~  204 (225)
T 2vq2_A          142 A--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--------EVLQADDLLLGWKIAKALGNAQAAY-EY  204 (225)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred             h--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCcHHHHH-HH
Confidence            8        67777899999999999999999999999999864        4 45566788899999999999999 99


Q ss_pred             HHHHHhhccccc
Q 004829          709 LVTFLDSNSQNL  720 (728)
Q Consensus       709 l~~ll~~~~~~~  720 (728)
                      ++.+....|...
T Consensus       205 ~~~~~~~~p~~~  216 (225)
T 2vq2_A          205 EAQLQANFPYSE  216 (225)
T ss_dssp             HHHHHHHCTTCH
T ss_pred             HHHHHHhCCCCH
Confidence            999888777653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.78  E-value=4.2e-17  Score=166.66  Aligned_cols=248  Identities=14%  Similarity=0.093  Sum_probs=193.7

Q ss_pred             cCChhHHHHHHHHhhhhhhhh-cC-CchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829          279 LGQYNEAIPVLERSVEIPVLE-DG-QDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRY  356 (728)
Q Consensus       279 ~g~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  356 (728)
                      .|++++|..+++++.+..... .. .......+..+...|.+|...|++++|+.+|.+++.+....  .+....+.++..
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~   81 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQ   81 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence            466777777777776654311 11 11222234457777889999999999999999999998764  233456789999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 004829          357 VAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASID  436 (728)
Q Consensus       357 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  436 (728)
                      +|.+|..+|++++|+.+|++++.+.+....+  ...+.++..+|.+|.. |++++|+.+|++++.+....++......++
T Consensus        82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~--~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~  158 (307)
T 2ifu_A           82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTP--DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELI  158 (307)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            9999999999999999999999998876532  3456789999999999 999999999999999988877767778899


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHH
Q 004829          437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEE  516 (728)
Q Consensus       437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  516 (728)
                      .++|.+|..+|++++|+.+|++++.+....  ...+....++..+|.++..+|++++|+.+|++++ +.....    ...
T Consensus       159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~----~~~  231 (307)
T 2ifu_A          159 GKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS----GSE  231 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST----TSH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC----CCH
Confidence            999999999999999999999999998765  2234456688999999999999999999999999 643321    222


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHH
Q 004829          517 IASGLIDIAAIYQSMNELEQAVK  539 (728)
Q Consensus       517 ~~~~~~~la~~~~~~g~~~~A~~  539 (728)
                      ....+..++..+ ..|+.+.+..
T Consensus       232 e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          232 DCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHH
Confidence            344566666655 5667654444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.78  E-value=4.3e-18  Score=184.91  Aligned_cols=218  Identities=14%  Similarity=0.150  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh-hHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHH
Q 004829          241 KALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQY-NEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTY  319 (728)
Q Consensus       241 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  319 (728)
                      .....+++++..++......  +..+.+++.+|.+|...|+| ++|+.+|++++++.     +..+    .+++.+|.+|
T Consensus        79 ~~~~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-----p~~~----~a~~~lg~~~  147 (474)
T 4abn_A           79 DVQEEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-----PELV----EAWNQLGEVY  147 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----CCCH----HHHHHHHHHH
Confidence            45556666776666554332  45577899999999999999 99999999999875     4433    3599999999


Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829          320 AMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQS---------LQFDEAEKICQMALDIHRENTSPASI  390 (728)
Q Consensus       320 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~  390 (728)
                      ...|++++|+.+|++++++        .|. ..++..+|.+|...         |++++|+.+|++++++.+..      
T Consensus       148 ~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------  212 (474)
T 4abn_A          148 WKKGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------  212 (474)
T ss_dssp             HHHTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------
T ss_pred             HHcCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC------
Confidence            9999999999999999988        566 58999999999999         99999999999999986543      


Q ss_pred             HHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHhcCCCh---hHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          391 EEAADRRLMGLICDSK--------GDYEAALEHYVLASMSMAANGHEL---DVASIDCSIGDAYLSLARFDEAIFSYHKA  459 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a  459 (728)
                        ..++..+|.+|...        |++++|+.+|++++.+      .|   ....+++++|.+|...|++++|+.+|+++
T Consensus       213 --~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  284 (474)
T 4abn_A          213 --GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQA  284 (474)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              34689999999999        9999999999999987      45   77899999999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829          460 LTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCEN  500 (728)
Q Consensus       460 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  500 (728)
                      +++        .|....++..++.++..+|++++|+..+.+
T Consensus       285 l~l--------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          285 AAL--------DPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999        888889999999999999999999876654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.77  E-value=7.8e-18  Score=189.88  Aligned_cols=176  Identities=20%  Similarity=0.246  Sum_probs=161.9

Q ss_pred             CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829          470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG  549 (728)
Q Consensus       470 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  549 (728)
                      ..|..+.++.+||.+|..+|++++|+.+|++++++         .|....++.++|.+|..+|++++|+.+|++++++.+
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P   74 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP   74 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            37889999999999999999999999999999999         344678999999999999999999999999999976


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          550 KTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART  629 (728)
Q Consensus       550 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  629 (728)
                      +.       +.++.++|.+|..+|++++|+.+|++++++        .+..+.++.++|.+|..+|++++|+.+|+++++
T Consensus        75 ~~-------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A           75 TF-------ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALK  139 (723)
T ss_dssp             TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            65       678999999999999999999999999998        445578999999999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 004829          630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKL  677 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~  677 (728)
                      +        +|+...++.+||.+|..+|++++|++.|++++++....+
T Consensus       140 l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~  179 (723)
T 4gyw_A          140 L--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL  179 (723)
T ss_dssp             H--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             h--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence            9        888889999999999999999999999999999876543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.77  E-value=6.5e-18  Score=190.51  Aligned_cols=178  Identities=22%  Similarity=0.284  Sum_probs=163.0

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829          514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG  593 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  593 (728)
                      .|..+.++.+||.+|..+|++++|+.+|++++++.++.       ..++.++|.+|..+|++++|+.+|++++++     
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----   72 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRI-----   72 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            56788999999999999999999999999999997665       678999999999999999999999999998     


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                         .+..+.+++++|.+|..+|++++|+.+|++++++        +|+...++.+||.+|..+|++++|+.+|++++++ 
T Consensus        73 ---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-  140 (723)
T 4gyw_A           73 ---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-  140 (723)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence               4556789999999999999999999999999999        8888999999999999999999999999999996 


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccccC
Q 004829          674 EEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLKED  723 (728)
Q Consensus       674 ~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~~~  723 (728)
                             +|+...++.+||.+|..+|++++|. ..++.+++..++.+...
T Consensus       141 -------~P~~~~a~~~L~~~l~~~g~~~~A~-~~~~kal~l~~~~~~~~  182 (723)
T 4gyw_A          141 -------KPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVADQLEKN  182 (723)
T ss_dssp             -------CSCCHHHHHHHHHHHHHTTCCTTHH-HHHHHHHHHHHHHHHTT
T ss_pred             -------CCCChHHHhhhhhHHHhcccHHHHH-HHHHHHHHhChhHHhhc
Confidence                   4778889999999999999999999 88888888877655443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.75  E-value=2e-17  Score=161.18  Aligned_cols=189  Identities=16%  Similarity=0.144  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829          433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP-AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG  511 (728)
Q Consensus       433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  511 (728)
                      +..++.+|.++...|++++|+..|++++.+        .| ....+++.+|.++...|++++|+.+|++++..       
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------   71 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------   71 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------
Confidence            368899999999999999999999999998        44 44567888999999999999999999999987       


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT  591 (728)
Q Consensus       512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  591 (728)
                        .|....++..+|.+|..+|++++|+..|++++++.+........++.++..+|.++...|++++|+.+|++++++   
T Consensus        72 --~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---  146 (228)
T 4i17_A           72 --NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---  146 (228)
T ss_dssp             --TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---
T ss_pred             --CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---
Confidence              344678899999999999999999999999999876652222234467899999999999999999999999986   


Q ss_pred             hCCCCcHH--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHHHHHhcCCCChhH
Q 004829          592 SGEKKSAL--FGIALNQMGLACVQRYTI---------------------------NEAADLFEEARTILEKEYGPYHHDT  642 (728)
Q Consensus       592 ~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~  642 (728)
                           .+.  ...++..+|.+|...|+.                           ++|+.+|++++++        .|+.
T Consensus       147 -----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~  213 (228)
T 4i17_A          147 -----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNR  213 (228)
T ss_dssp             -----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred             -----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCC
Confidence                 455  678999999999998888                           8899999999998        7776


Q ss_pred             HHHHHHHHHHHH
Q 004829          643 LGVYSNLAGTYD  654 (728)
Q Consensus       643 ~~~~~~La~~~~  654 (728)
                      ..+...++.+..
T Consensus       214 ~~~~~~l~~i~~  225 (228)
T 4i17_A          214 TEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            667777776643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.74  E-value=1.3e-16  Score=158.85  Aligned_cols=224  Identities=14%  Similarity=0.114  Sum_probs=182.5

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      .+..+..++.+|..++..|++++|+..|++++...     ++++....+++.+|.+|...|++++|+..|++++..... 
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-   84 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI-   84 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-
Confidence            45567889999999999999999999999999861     223444899999999999999999999999999999533 


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          509 NHGIPSEEIASGLIDIAAIYQS--------MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN  580 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  580 (728)
                           ++....+++.+|.++..        .|++++|+..|++++...+....    ..                 .+..
T Consensus        85 -----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~-----------------~a~~  138 (261)
T 3qky_A           85 -----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL----VD-----------------DATQ  138 (261)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT----HH-----------------HHHH
T ss_pred             -----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh----HH-----------------HHHH
Confidence                 44567889999999999        99999999999999998776521    11                 1111


Q ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----
Q 004829          581 TLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM----  656 (728)
Q Consensus       581 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~----  656 (728)
                      .+....           ......++.+|.+|...|++++|+..|++++..     .|+++....+++.+|.+|..+    
T Consensus       139 ~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~  202 (261)
T 3qky_A          139 KIRELR-----------AKLARKQYEAARLYERRELYEAAAVTYEAVFDA-----YPDTPWADDALVGAMRAYIAYAEQS  202 (261)
T ss_dssp             HHHHHH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHH-----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHhcccc
Confidence            111111           113455788999999999999999999999998     233444788999999999987    


Q ss_pred             ------CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829          657 ------GRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       657 ------g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                            |++++|+.+|+++++..     |++|....+...++.++..+++++++.
T Consensus       203 ~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          203 VRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence                  89999999999999865     788888999999999999999988766

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.71  E-value=3e-16  Score=152.76  Aligned_cols=188  Identities=11%  Similarity=0.012  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Q 004829          267 MCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGET  346 (728)
Q Consensus       267 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  346 (728)
                      ..++.+|.+++..|++++|+..|++++.+.+    +...    .+++.+|.++...|++++|+.+|++++..        
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------   71 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN----NQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKK--------   71 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccC----CCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence            5688999999999999999999999998752    0222    34778999999999999999999999988        


Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829          347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN  426 (728)
Q Consensus       347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  426 (728)
                      .|....++..+|.+|...|++++|+..|++++.+.|.... .....+.++..+|.++...|++++|+..|++++.+    
T Consensus        72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----  146 (228)
T 4i17_A           72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT-IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----  146 (228)
T ss_dssp             TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred             CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----
Confidence            7889999999999999999999999999999998765421 11223457999999999999999999999999854    


Q ss_pred             CCChh--HHHHHHHHHHHHHHhCCH---------------------------HHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 004829          427 GHELD--VASIDCSIGDAYLSLARF---------------------------DEAIFSYHKALTAFKSAKGENHPAVASV  477 (728)
Q Consensus       427 ~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~  477 (728)
                        .|.  ...++.++|.+|...|+.                           ++|+.+|++++++        .|....+
T Consensus       147 --~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~  216 (228)
T 4i17_A          147 --TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRTEI  216 (228)
T ss_dssp             --SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             --CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCHHH
Confidence              677  789999999999999988                           8899999999988        6666666


Q ss_pred             HHHHHHHH
Q 004829          478 FVRLADLY  485 (728)
Q Consensus       478 ~~~la~~~  485 (728)
                      ...++.+.
T Consensus       217 ~~~l~~i~  224 (228)
T 4i17_A          217 KQMQDQVK  224 (228)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.70  E-value=9.2e-16  Score=152.72  Aligned_cols=223  Identities=16%  Similarity=0.123  Sum_probs=176.4

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004829          263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV  342 (728)
Q Consensus       263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  342 (728)
                      +..+..++.+|..++..|+|++|+..|++++...     +.++. ...+++.+|.+|...|++++|+..|++++...   
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---   82 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEW-AADAQFYLARAYYQNKEYLLAASEYERFIQIY---   82 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcc-hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---
Confidence            4456778999999999999999999999999875     33321 24469999999999999999999999999984   


Q ss_pred             cCCCChHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          343 LGETDHRVGETCRYVAEAHVQ--------SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALE  414 (728)
Q Consensus       343 ~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~  414 (728)
                        ++++....+++.+|.++..        .|++++|+..|++++...|.....        .              .+..
T Consensus        83 --p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--------~--------------~a~~  138 (261)
T 3qky_A           83 --QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV--------D--------------DATQ  138 (261)
T ss_dssp             --TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH--------H--------------HHHH
T ss_pred             --CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH--------H--------------HHHH
Confidence              2256778899999999999        999999999999999987765321        1              1111


Q ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc------
Q 004829          415 HYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI------  488 (728)
Q Consensus       415 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------  488 (728)
                      .+...         .......++.+|.+|...|++++|+..|++++...     ++.+....++..+|.+|..+      
T Consensus       139 ~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~  204 (261)
T 3qky_A          139 KIREL---------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVR  204 (261)
T ss_dssp             HHHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCG
T ss_pred             HHHHH---------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchh
Confidence            11111         12234457899999999999999999999999872     12333788999999999987      


Q ss_pred             ----CChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 004829          489 ----GKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV  538 (728)
Q Consensus       489 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  538 (728)
                          |++++|+.+|+++++...      +++....+...++.++...++++.+.
T Consensus       205 ~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          205 ARQPERYRRAVELYERLLQIFP------DSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHCT------TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hcccchHHHHHHHHHHHHHHCC------CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence                899999999999999853      35566778888888888888776544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=1.5e-15  Score=155.16  Aligned_cols=228  Identities=12%  Similarity=0.073  Sum_probs=186.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHHHcCCCCCCCcH
Q 004829          450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-------IGKL-------RDSKSYCENALKIYGKPNHGIPSE  515 (728)
Q Consensus       450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~~~~~~~~~~~~~  515 (728)
                      ++|+..|++++..        .|....+++.+|.++..       .|++       ++|+..|++++...        .|
T Consensus        33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p   96 (308)
T 2ond_A           33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LK   96 (308)
T ss_dssp             HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TT
T ss_pred             HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------Cc
Confidence            6899999999998        77888899999998874       5886       89999999999831        23


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004829          516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK  595 (728)
Q Consensus       516 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  595 (728)
                      ....+|..+|.++...|++++|...|++++++.+..+      ..++..+|.++...|++++|...|+++++..    +.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----p~  166 (308)
T 2ond_A           97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP------TLVYIQYMKFARRAEGIKSGRMIFKKAREDA----RT  166 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTST----TC
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CC
Confidence            4567899999999999999999999999998644321      1278899999999999999999999998751    11


Q ss_pred             CcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829          596 KSALFGIALNQMGLACVQ-RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE  674 (728)
Q Consensus       596 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~  674 (728)
                          ...++...+.+... .|++++|...|+++++.        .|....++..++.++..+|++++|+.+|++++... 
T Consensus       167 ----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-  233 (308)
T 2ond_A          167 ----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-  233 (308)
T ss_dssp             ----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-
T ss_pred             ----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-
Confidence                13445555555333 79999999999999998        67777899999999999999999999999999831 


Q ss_pred             HHcCCCChH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          675 EKLGTANPD-VEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       675 ~~~~~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                          ...|+ ...++..++.++...|++++|. ..++.+++..|+..+
T Consensus       234 ----~l~p~~~~~l~~~~~~~~~~~g~~~~a~-~~~~~a~~~~p~~~~  276 (308)
T 2ond_A          234 ----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAFREEYE  276 (308)
T ss_dssp             ----SSCGGGCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHTTTTTS
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHcccccc
Confidence                11343 5678888999999999999999 999999999987543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.4e-14  Score=155.66  Aligned_cols=240  Identities=16%  Similarity=0.171  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          354 CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA---------SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMA  424 (728)
Q Consensus       354 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  424 (728)
                      ....|..+...|+|++|++.|.++++..+......         ......++..+|.+|...|++++|++++.+++....
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            45567778899999999999999998766554321         123345688999999999999999999999998887


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          425 ANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       425 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      ..+.......+...++.++...|++++|+.++++++......  .+.+..+.++..+|.+|...|+|.+|..++++++..
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            766656666778889999999999999999999999998876  346667889999999999999999999999999999


Q ss_pred             HcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS  584 (728)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  584 (728)
                      .....   +.+..+.++..++.+|...|++++|..++++++.+...........+.++..+|.++...++|.+|..+|.+
T Consensus       165 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~  241 (434)
T 4b4t_Q          165 FKKLD---DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE  241 (434)
T ss_dssp             HTTSS---CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             HHhcc---cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            87743   467788999999999999999999999999999999887555556678889999999999999999999999


Q ss_pred             HHHHHHHhCCCCcH
Q 004829          585 AISKFRTSGEKKSA  598 (728)
Q Consensus       585 al~~~~~~~~~~~~  598 (728)
                      ++..+.........
T Consensus       242 a~~~~~~~~~~~~~  255 (434)
T 4b4t_Q          242 SFESYHNLTTHNSY  255 (434)
T ss_dssp             HHHHHHHTTTSSCH
T ss_pred             HHHHhhhhhhhhhH
Confidence            99998887765544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.66  E-value=3.3e-15  Score=152.62  Aligned_cols=222  Identities=12%  Similarity=0.053  Sum_probs=180.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHH-HHHHhcCCCCHHH
Q 004829          410 EAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS-------LARF-------DEAIFSYHKALT-AFKSAKGENHPAV  474 (728)
Q Consensus       410 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~~~  474 (728)
                      ++|+..|++++..      .|....+|+.+|.++..       .|++       ++|+..|++++. +        .|..
T Consensus        33 ~~a~~~~~~al~~------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p~~   98 (308)
T 2ond_A           33 KRVMFAYEQCLLV------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKN   98 (308)
T ss_dssp             HHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TTTC
T ss_pred             HHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------Cccc
Confidence            6888999999876      36677889999988864       5886       899999999998 6        6777


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829          475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ  554 (728)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  554 (728)
                      ..++..+|.++...|++++|...|++++++...      .+.  .+|..+|.++...|++++|+..|+++++..+..   
T Consensus        99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---  167 (308)
T 2ond_A           99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR---  167 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------CTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------Ccc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---
Confidence            889999999999999999999999999986211      111  278999999999999999999999999765432   


Q ss_pred             CCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          555 QSTIAGIEAQMGVMYY-MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                          ..++...+.+.. ..|++++|..+|+++++..        +....++..+|.++...|++++|..+|++++...  
T Consensus       168 ----~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--  233 (308)
T 2ond_A          168 ----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--  233 (308)
T ss_dssp             ----THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--
T ss_pred             ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--
Confidence                234444444433 3799999999999999973        2235788999999999999999999999999840  


Q ss_pred             hcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          634 EYGPYHH-DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       634 ~~~~~~~-~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                         .-.| ....++..++..+...|++++|..+++++++..
T Consensus       234 ---~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          234 ---SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             ---SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence               0134 356688889999999999999999999999865

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.66  E-value=2.1e-14  Score=145.52  Aligned_cols=199  Identities=10%  Similarity=-0.050  Sum_probs=162.9

Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .+.....+...+..+...|++++|+.+++++++.....   .........+..+|.++...|++++|+.+|++++.+...
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  147 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT  147 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence            34455667778899999999999999999999875431   112234566778999999999999999999999987665


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      . ......+.++..+|.+|..+|++++|+.+|++++++.+..... ......+++++|.+|..+|++++|+.+|++++.+
T Consensus       148 ~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          148 G-IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             S-SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C-CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4 3344467789999999999999999999999999988776543 2223478999999999999999999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 004829          631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDA-IEILEYVVGMREEK  676 (728)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A-~~~~~~al~~~~~~  676 (728)
                      ....  ........+++++|.+|..+|++++| ..+|++++.+.+..
T Consensus       226 ~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          226 SCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            7542  22344678999999999999999999 88899999988654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.65  E-value=4.5e-15  Score=159.15  Aligned_cols=150  Identities=11%  Similarity=-0.054  Sum_probs=140.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004829          565 MGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG  644 (728)
Q Consensus       565 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  644 (728)
                      .+..+..+|+|++|+.++++++++.....+..++..+.++.+||.+|..+|+|++|+.++++++++.+..+|++||+++.
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  394 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM  394 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            34556789999999999999999999988888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829          645 VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS  715 (728)
Q Consensus       645 ~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~  715 (728)
                      .+.+||.+|..+|++++|+.+|++|+++.+..+|++||.+.+....|+.++..+|++++|. ..+..+.+.
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae-~~~~~~~~~  464 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE-FMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 655555443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.65  E-value=9.4e-17  Score=165.78  Aligned_cols=328  Identities=15%  Similarity=0.105  Sum_probs=151.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829          238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD  317 (728)
Q Consensus       238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  317 (728)
                      +.++|.+++++.=           +|   .+|..+|.++...|++++|+..|.++-          .    ...+..++.
T Consensus        18 ~ld~A~~fae~~~-----------~~---~vWs~La~A~l~~g~~~eAIdsfika~----------D----~~~y~~V~~   69 (449)
T 1b89_A           18 NLDRAYEFAERCN-----------EP---AVWSQLAKAQLQKGMVKEAIDSYIKAD----------D----PSSYMEVVQ   69 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CHHHHHHHHHhCC-----------Ch---HHHHHHHHHHHHcCCHHHHHHHHHcCC----------C----HHHHHHHHH
Confidence            7888888888771           12   368899999999999999999997642          1    124888899


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 004829          318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRR  397 (728)
Q Consensus       318 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~  397 (728)
                      ++...|++++|+.+++.+++.        .+. ..+...++.+|.+.|++.++.++++.          +.    ..++.
T Consensus        70 ~ae~~g~~EeAi~yl~~ark~--------~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~----------pn----~~a~~  126 (449)
T 1b89_A           70 AANTSGNWEELVKYLQMARKK--------ARE-SYVETELIFALAKTNRLAELEEFING----------PN----NAHIQ  126 (449)
T ss_dssp             ------------------------------------------------CHHHHTTTTTC----------C----------
T ss_pred             HHHhCCCHHHHHHHHHHHHHh--------Ccc-chhHHHHHHHHHHhCCHHHHHHHHcC----------Cc----HHHHH
Confidence            999999999999999988775        222 45677789999999999998887752          11    12699


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 004829          398 LMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASV  477 (728)
Q Consensus       398 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  477 (728)
                      .+|..++..|.|++|..+|.++              ..+..+|.++..+|++++|++.++++.          .   ..+
T Consensus       127 ~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~---~~~  179 (449)
T 1b89_A          127 QVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN----------S---TRT  179 (449)
T ss_dssp             ----------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C---HHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C---chh
Confidence            9999999999999999999865              367899999999999999999999981          2   456


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc
Q 004829          478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST  557 (728)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  557 (728)
                      |..+..++...|+++.|..+...   +.       .+++.   +..+..+|.+.|++++|+.++++++.+.+..      
T Consensus       180 Wk~v~~aCv~~~ef~lA~~~~l~---L~-------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah------  240 (449)
T 1b89_A          180 WKEVCFACVDGKEFRLAQMCGLH---IV-------VHADE---LEELINYYQDRGYFEELITMLEAALGLERAH------  240 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHHTTTT---TT-------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC------
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHH---HH-------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH------
Confidence            78888999999999999666554   11       13433   3458889999999999999999998664333      


Q ss_pred             HHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------
Q 004829          558 IAGIEAQMGVMYYM--TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART------  629 (728)
Q Consensus       558 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------  629 (728)
                       ..++..+|.+|.+  .++..+.++.|...+.+-+-+..   -..+..|..+..+|...++|+.|+...-+...      
T Consensus       241 -~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~---~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~  316 (449)
T 1b89_A          241 -MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA---AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEG  316 (449)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH---HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHH
T ss_pred             -HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhH
Confidence             5677778877754  45666777776665554210000   01234677888999999999999875443210      


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829          630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV  670 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al  670 (728)
                      .+.++..  .+...+.++.....|.  +....++..+..++
T Consensus       317 ~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l~~ll~~l  353 (449)
T 1b89_A          317 QFKDIIT--KVANVELYYRAIQFYL--EFKPLLLNDLLMVL  353 (449)
T ss_dssp             HHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred             HHHHHHh--chhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence            0111100  1223456666666666  44455555555555

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.65  E-value=2e-14  Score=136.59  Aligned_cols=193  Identities=16%  Similarity=0.141  Sum_probs=159.0

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 004829          320 AMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLM  399 (728)
Q Consensus       320 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l  399 (728)
                      +..|++++|...++....        +.+....++..+|.++...|++++|+.++++++.+......  ....+.++..+
T Consensus         3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l   72 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--HTAEHRALHQV   72 (203)
T ss_dssp             ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHH
Confidence            467899999985544321        24467889999999999999999999999999999887653  45567789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004829          400 GLICDSKGDYEAALEHYVLASMSMAANGHEL-DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVF  478 (728)
Q Consensus       400 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  478 (728)
                      |.++...|++++|+.++.+++.+....++.+ ..+.++.++|.++...|++++|+.++++++.+.+..  .+......++
T Consensus        73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~  150 (203)
T 3gw4_A           73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAF  150 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHHHH
Confidence            9999999999999999999999998887554 778899999999999999999999999999987765  3345567788


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH
Q 004829          479 VRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAI  527 (728)
Q Consensus       479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~  527 (728)
                      ..+|.++...|++++|..++++++.+.+...   +......++..++.+
T Consensus       151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          151 RGLGDLAQQEKNLLEAQQHWLRARDIFAELE---DSEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHhcccch
Confidence            9999999999999999999999999988754   344555566555544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.65  E-value=1.5e-14  Score=137.44  Aligned_cols=195  Identities=10%  Similarity=0.121  Sum_probs=157.1

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829          443 YLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI  522 (728)
Q Consensus       443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  522 (728)
                      ++..|++++|...++....        +......++..+|.++...|++++|+.++++++.+.+...   +.+....++.
T Consensus         2 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~   70 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG---DHTAEHRALH   70 (203)
T ss_dssp             -----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---CHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC---CcHHHHHHHH
Confidence            3567899999885544322        2446788999999999999999999999999999998754   4677889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q 004829          523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGI  602 (728)
Q Consensus       523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  602 (728)
                      .+|.++...|++++|+.++++++.+.............++..+|.++...|++++|+.++++++.+.+..+.  ....+.
T Consensus        71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~  148 (203)
T 3gw4_A           71 QVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--QVAIAC  148 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--hHHHHH
Confidence            999999999999999999999999998763234467788999999999999999999999999999877654  344577


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 004829          603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT  652 (728)
Q Consensus       603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~  652 (728)
                      ++..+|.++...|++++|+.++++++.+.+....  ......++..++.+
T Consensus       149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED--SEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHhcccch
Confidence            8899999999999999999999999999877532  22334444444443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.64  E-value=8.8e-17  Score=165.97  Aligned_cols=322  Identities=16%  Similarity=0.096  Sum_probs=149.5

Q ss_pred             HHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 004829          275 IHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETC  354 (728)
Q Consensus       275 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  354 (728)
                      +....|++++|.+++++.-          ++    .+|..||.++...|++++|++.|.++             .....+
T Consensus        12 ll~~~~~ld~A~~fae~~~----------~~----~vWs~La~A~l~~g~~~eAIdsfika-------------~D~~~y   64 (449)
T 1b89_A           12 LIEHIGNLDRAYEFAERCN----------EP----AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSY   64 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHccCHHHHHHHHHhCC----------Ch----HHHHHHHHHHHHcCCHHHHHHHHHcC-------------CCHHHH
Confidence            3456788999999998861          12    25999999999999999999999763             122467


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHH
Q 004829          355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVAS  434 (728)
Q Consensus       355 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  434 (728)
                      ..++..+...|+|++|+.+++.+++..+.         +.+...++.+|.+.|++.++.+++..           |.. .
T Consensus        65 ~~V~~~ae~~g~~EeAi~yl~~ark~~~~---------~~i~~~Li~~Y~Klg~l~e~e~f~~~-----------pn~-~  123 (449)
T 1b89_A           65 MEVVQAANTSGNWEELVKYLQMARKKARE---------SYVETELIFALAKTNRLAELEEFING-----------PNN-A  123 (449)
T ss_dssp             -----------------------------------------------------CHHHHTTTTTC-----------C----
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCcc---------chhHHHHHHHHHHhCCHHHHHHHHcC-----------CcH-H
Confidence            78888899999999999999988874322         12466789999999999999887742           222 4


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCc
Q 004829          435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPS  514 (728)
Q Consensus       435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  514 (728)
                      ++..+|..+...|+|++|..+|.++                ..+..+|.++..+|+|++|++.++++.            
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~------------  175 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN------------  175 (449)
T ss_dssp             -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC------------
Confidence            8999999999999999999999976                247889999999999999999999982            


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829          515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE  594 (728)
Q Consensus       515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  594 (728)
                        ...+|..++.++...|+++.|..+....        ...   +.-+..+..+|.+.|++++|+.++++++.+      
T Consensus       176 --~~~~Wk~v~~aCv~~~ef~lA~~~~l~L--------~~~---ad~l~~lv~~Yek~G~~eEai~lLe~aL~l------  236 (449)
T 1b89_A          176 --STRTWKEVCFACVDGKEFRLAQMCGLHI--------VVH---ADELEELINYYQDRGYFEELITMLEAALGL------  236 (449)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHTTTTT--------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------
T ss_pred             --CchhHHHHHHHHHHcCcHHHHHHHHHHH--------HhC---HhhHHHHHHHHHHCCCHHHHHHHHHHHhCC------
Confidence              2467888899999999999996655431        111   222346888999999999999999999876      


Q ss_pred             CCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004829          595 KKSALFGIALNQMGLACVQR--YTINEAADLFEEARTILEKEYGPYHH-----DTLGVYSNLAGTYDAMGRIDDAIEILE  667 (728)
Q Consensus       595 ~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~La~~~~~~g~~~~A~~~~~  667 (728)
                        .+....++..||.+|.+-  ++..++++.|...+.+        .+     +....|..+..+|...++++.|+..+-
T Consensus       237 --e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini--------~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~  306 (449)
T 1b89_A          237 --ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI--------PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM  306 (449)
T ss_dssp             --TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH--------HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence              222346777788777754  4677777777766665        33     334578899999999999999987655


Q ss_pred             HHHH------HHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829          668 YVVG------MREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       668 ~al~------~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                      +...      .+..++  .++...+.++.....|.  +....+.
T Consensus       307 ~h~~~a~~~~~f~~~~--~kv~n~elyYkai~fyl--~~~p~~l  346 (449)
T 1b89_A          307 NHPTDAWKEGQFKDII--TKVANVELYYRAIQFYL--EFKPLLL  346 (449)
T ss_dssp             HSTTTTCCHHHHHHHH--HHCSSTHHHHHHHHHHH--HHCGGGH
T ss_pred             hCChhhhhhHHHHHHH--hchhHHHHHHHHHHHHH--hcCHHHH
Confidence            4321      011110  02344566666666666  3344445

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.64  E-value=1.4e-14  Score=146.78  Aligned_cols=198  Identities=10%  Similarity=-0.049  Sum_probs=161.2

Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      ......+...+..+...|++++|..++++++......   .........+..+|.++...+++++|+.+|++++.+....
T Consensus        72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~  148 (293)
T 3u3w_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG  148 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC---hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc
Confidence            3344555566788899999999999999998853221   0111124455679999999999999999999999965544


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTIL  631 (728)
Q Consensus       552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  631 (728)
                       ........++.++|.+|..+|++++|+.+|+++++.++.... .....+.+++++|.+|..+|++++|+.++++++++.
T Consensus       149 -~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~  226 (293)
T 3u3w_A          149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence             334456678999999999999999999999999999887744 456678899999999999999999999999999997


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHH
Q 004829          632 EKEYGPYHHDTLGVYSNLAGTYDAMGR-IDDAIEILEYVVGMREEK  676 (728)
Q Consensus       632 ~~~~~~~~~~~~~~~~~La~~~~~~g~-~~~A~~~~~~al~~~~~~  676 (728)
                      .....  .+....+++++|.+|..+|+ +++|+.+|++|+.+.+..
T Consensus       227 ~~~~~--~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          227 CRINS--MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHTTB--CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCc--HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            76532  45668899999999999995 699999999999988754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.63  E-value=1.5e-14  Score=146.53  Aligned_cols=195  Identities=13%  Similarity=0.024  Sum_probs=158.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829          395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV  474 (728)
Q Consensus       395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  474 (728)
                      .+...+..+...|++++|+..+.+++...............++.+|.++...|++++|+.+|++++.+....  .+....
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~  154 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--SCTTHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--CchHHH
Confidence            355678889999999999999998876532222223345567789999999999999999999999864432  234456


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829          475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ  554 (728)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  554 (728)
                      +.++.++|.+|...|++++|+.+|++++.+.+...  ........++.++|.+|..+|++++|+.++++++.+.... +.
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~  231 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NS  231 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TB
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-Cc
Confidence            77999999999999999999999999998876532  1222234799999999999999999999999999998764 55


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCC
Q 004829          555 QSTIAGIEAQMGVMYYMTGNYSDS-YNTLKSAISKFRTSGE  594 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~  594 (728)
                      ....+.++.++|.+|..+|++++| ..+|++|+.+++..+.
T Consensus       232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~  272 (293)
T 2qfc_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence            567788999999999999999999 8889999998876654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.63  E-value=1.2e-15  Score=173.07  Aligned_cols=207  Identities=10%  Similarity=-0.032  Sum_probs=168.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCC
Q 004829          434 SIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIP  513 (728)
Q Consensus       434 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  513 (728)
                      .+++..|   ...|++++|+..|++++...-......+|....++..+|.+|...|++++|+..|++++++.        
T Consensus       395 ~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------  463 (681)
T 2pzi_A          395 AASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--------  463 (681)
T ss_dssp             THHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------
T ss_pred             chHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------
Confidence            3444444   77899999999999998211111111278888899999999999999999999999999994        


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829          514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG  593 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  593 (728)
                       |....+++.+|.+|..+|++++|+..|++++++.+..       ..++.++|.+|..+|++++ +.+|++++++     
T Consensus       464 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-----  529 (681)
T 2pzi_A          464 -GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-------LAPKLALAATAELAGNTDE-HKFYQTVWST-----  529 (681)
T ss_dssp             -CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-----
T ss_pred             -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCChHH-HHHHHHHHHh-----
Confidence             3356789999999999999999999999999997765       4678899999999999999 9999999998     


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHH
Q 004829          594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDA-IEILEYVVGM  672 (728)
Q Consensus       594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A-~~~~~~al~~  672 (728)
                         .+....+++++|.++..+|++++|+..|++++++        +|....+++++|.++...++.++| ...+++++..
T Consensus       530 ---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~  598 (681)
T 2pzi_A          530 ---NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARR  598 (681)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHH
T ss_pred             ---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence               4445679999999999999999999999999998        899999999999999888876665 6677777766


Q ss_pred             HHHH
Q 004829          673 REEK  676 (728)
Q Consensus       673 ~~~~  676 (728)
                      ....
T Consensus       599 l~~~  602 (681)
T 2pzi_A          599 VEAL  602 (681)
T ss_dssp             HHTS
T ss_pred             HhhC
Confidence            5544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.63  E-value=1e-14  Score=136.06  Aligned_cols=171  Identities=15%  Similarity=0.151  Sum_probs=150.2

Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .......+..+|.++...|++++|+.++++++...         +....++..+|.++...|++++|+.++++++...+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   74 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD---------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD   74 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            44567788999999999999999999999987652         223678899999999999999999999999988544


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      .       ..++..+|.++...|++++|+.++++++..        .+....++..+|.++...|++++|+.+|++++..
T Consensus        75 ~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A           75 N-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence            3       567889999999999999999999999987        2223578899999999999999999999999998


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                              .|....++..+|.++...|++++|+.++++++.+.
T Consensus       140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                    66667899999999999999999999999999865

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.63  E-value=1.6e-14  Score=146.33  Aligned_cols=193  Identities=13%  Similarity=0.037  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD---VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                      .+...+..+...|++++|+..+++++...   ...+.   ....+..+|.++...|++++|+.+|++++.+....  .+.
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~  151 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE---EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDV  151 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SCT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccc---cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--ccH
Confidence            34456778889999999999999887532   22222   24456679999999999999999999999853322  234


Q ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      ...+.++.++|.+|..+|++++|+.+|+++++......  .+.+..+.++.++|.+|..+|++++|+.++++++++.+..
T Consensus       152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence            45577899999999999999999999999999887642  2567788899999999999999999999999999999877


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCC
Q 004829          552 PGQQSTIAGIEAQMGVMYYMTGN-YSDSYNTLKSAISKFRTSGEK  595 (728)
Q Consensus       552 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~  595 (728)
                       +.....+.++..+|.+|..+|+ +++|+.+|++|+.+++..+..
T Consensus       230 -~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~  273 (293)
T 3u3w_A          230 -NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH  273 (293)
T ss_dssp             -TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             -CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence             5666778999999999999995 699999999999999887654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.63  E-value=8e-15  Score=136.80  Aligned_cols=175  Identities=18%  Similarity=0.207  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829          515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE  594 (728)
Q Consensus       515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  594 (728)
                      ......+..+|.++...|++++|+.++++++...+..       ..++..+|.++...|++++|+.++++++..      
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------   71 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLAD------   71 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence            3457788999999999999999999999887654332       577889999999999999999999999987      


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829          595 KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE  674 (728)
Q Consensus       595 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~  674 (728)
                        .+....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++... 
T Consensus        72 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-  140 (186)
T 3as5_A           72 --APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-  140 (186)
T ss_dssp             --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             --CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-
Confidence              2233578899999999999999999999999998        67777899999999999999999999999999853 


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          675 EKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       675 ~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                             |....++..+|.++...|++++|. ..++.++...|....
T Consensus       141 -------~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          141 -------PNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANELDEGASV  179 (186)
T ss_dssp             -------TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHCCCG
T ss_pred             -------ccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCchh
Confidence                   556788999999999999999999 999999888877543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.7e-13  Score=147.23  Aligned_cols=239  Identities=11%  Similarity=0.064  Sum_probs=198.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC-----------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          396 RRLMGLICDSKGDYEAALEHYVLASMSMAANGHE-----------LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFK  464 (728)
Q Consensus       396 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  464 (728)
                      ....|..+...|++++|++.|.+++.......+.           .....++..+|.+|...|++++|++++.+++.+..
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4456778889999999999999988654433221           23345789999999999999999999999999876


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          465 SAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA  544 (728)
Q Consensus       465 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  544 (728)
                      ..  .+......+...++.++...|++++|+.++++++.+.....   .....+.++..+|.+|...|+|++|+.+++++
T Consensus        87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~  161 (434)
T 4b4t_Q           87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK---RVFLKHSLSIKLATLHYQKKQYKDSLALINDL  161 (434)
T ss_dssp             TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS---CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence            64  12334456777889999999999999999999999887643   34457889999999999999999999999999


Q ss_pred             HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829          545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLF  624 (728)
Q Consensus       545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  624 (728)
                      +...... +.......++..+|.+|...|++++|..++++++.+....... +...+..+..+|.++...+++.+|..+|
T Consensus       162 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~y~~A~~~~  239 (434)
T 4b4t_Q          162 LREFKKL-DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP-TQTVAELDLMSGILHCEDKDYKTAFSYF  239 (434)
T ss_dssp             HHHHTTS-SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHHHHhc-ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            9988776 5667788899999999999999999999999999988776543 3446788899999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChh
Q 004829          625 EEARTILEKEYGPYHHD  641 (728)
Q Consensus       625 ~~al~~~~~~~~~~~~~  641 (728)
                      .+++..+..........
T Consensus       240 ~~a~~~~~~~~~~~~~~  256 (434)
T 4b4t_Q          240 FESFESYHNLTTHNSYE  256 (434)
T ss_dssp             HHHHHHHHHTTTSSCHH
T ss_pred             HHHHHHhhhhhhhhhHH
Confidence            99999887765544433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.61  E-value=3.3e-14  Score=137.87  Aligned_cols=184  Identities=11%  Similarity=0.054  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829          518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS  597 (728)
Q Consensus       518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  597 (728)
                      ...++.+|..+...|++++|+..|++++...+..    .....+++.+|.+|...|++++|+..|+++++...     ..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-----~~   74 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-----TH   74 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-----CC
Confidence            4568899999999999999999999999876543    23456788999999999999999999999998732     23


Q ss_pred             HHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------H
Q 004829          598 ALFGIALNQMGLACVQ------------------RYTINEAADLFEEARTILEKEYGPYHHDTLG--------------V  645 (728)
Q Consensus       598 ~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~  645 (728)
                      +....+++.+|.++..                  .|++++|+..|+++++.     .|+++....              .
T Consensus        75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~~  149 (225)
T 2yhc_A           75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAKY  149 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHHH
Confidence            3345678888888876                  57899999999999887     222332222              2


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          646 YSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       646 ~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                      ...+|.+|...|++++|+..|+++++..     |.+|....++..+|.+|..+|++++|+ ..++.+....|..+.
T Consensus       150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~-~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          150 EYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAE-KVAKIIAANSSNTLE  219 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCCSCCCC
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhCCCchh
Confidence            2678999999999999999999999865     566777899999999999999999999 999999988887664

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.61  E-value=1.4e-14  Score=138.62  Aligned_cols=165  Identities=13%  Similarity=0.135  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH----------------HHHHHHHcCChHHHHH
Q 004829          433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR----------------LADLYHKIGKLRDSKS  496 (728)
Q Consensus       433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~  496 (728)
                      +..+...|..+...|++++|+.+|++++.+        .|....+++.                +|.+|...|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            345678899999999999999999999998        8888888888                9999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCH-
Q 004829          497 YCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNY-  575 (728)
Q Consensus       497 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-  575 (728)
                      +|++++++         .|....++..+|.++...|++++|+.+|++++++.+..       ..++..+|.+|+..|+. 
T Consensus        76 ~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           76 FYKELLQK---------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-------LAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHhHHH
Confidence            99999999         34457889999999999999999999999999997665       67889999999877643 


Q ss_pred             -HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          576 -SDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       576 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                       ..+...+.+++.       . .+ ...+++.+|.++...|++++|+.+|++++++
T Consensus       140 ~~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          140 KKKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence             344555555432       2 22 2456788899999999999999999999998

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.60  E-value=1.2e-15  Score=137.50  Aligned_cols=147  Identities=12%  Similarity=0.102  Sum_probs=124.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Q 004829          523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGI  602 (728)
Q Consensus       523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  602 (728)
                      .||.++...|++++|+..+++++...++.       ...++.+|.+|...|++++|+.+|++++++        .+....
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~-------~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~   66 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQK-------SIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK   66 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHH-------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence            47889999999999999999998765544       456788999999999999999999999998        444578


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHHcCCCC
Q 004829          603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEI-LEYVVGMREEKLGTAN  681 (728)
Q Consensus       603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~  681 (728)
                      ++..+|.+|...|++++|+.+|++++++        +|....+++.+|.+|...|++++|... +++++++.        
T Consensus        67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--------  130 (150)
T 4ga2_A           67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--------  130 (150)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--------
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--------
Confidence            9999999999999999999999999999        888888999999999999999887765 58999864        


Q ss_pred             hHHHHHHHHHHHHHHHhCC
Q 004829          682 PDVEDEKRRLAELLKEAGR  700 (728)
Q Consensus       682 p~~~~~~~~La~~~~~~g~  700 (728)
                      |....++..++.++..+|+
T Consensus       131 P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHHHHHHHHHHHHTCCC
T ss_pred             cCCHHHHHHHHHHHHHhCc
Confidence            6666778888888888875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.60  E-value=7.4e-15  Score=166.66  Aligned_cols=201  Identities=12%  Similarity=-0.007  Sum_probs=167.0

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 004829          320 AMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLM  399 (728)
Q Consensus       320 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l  399 (728)
                      ...|++++|+..|++++...-...+..+|....++..+|.++...|++++|+..|++++++.+..        ..+++.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR--------WRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--------HHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--------HHHHHHH
Confidence            67899999999999998211111112268888899999999999999999999999999987654        3579999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004829          400 GLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFV  479 (728)
Q Consensus       400 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  479 (728)
                      |.++...|++++|+..|++++.+      .|....++.++|.++..+|++++ +.+|++++++        +|....+++
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~  538 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAF  538 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHH
Confidence            99999999999999999999987      56667899999999999999999 9999999999        888899999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHhcCC
Q 004829          480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA-VKLLNKALKIYGKTP  552 (728)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~  552 (728)
                      ++|.+|..+|++++|+..|++++++         .|....++.++|.++...++.+++ ...+.+|++......
T Consensus       539 ~lg~~~~~~g~~~~A~~~~~~al~l---------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          539 GLARARSAEGDRVGAVRTLDEVPPT---------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCTT---------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhccc---------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            9999999999999999999999887         456788999999999887776666 677777777776654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.60  E-value=5.3e-14  Score=134.51  Aligned_cols=166  Identities=10%  Similarity=-0.006  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHH----------------HHHHHHHcCCHHHHH
Q 004829          475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLID----------------IAAIYQSMNELEQAV  538 (728)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~  538 (728)
                      +..++..|..+...|++++|+.+|++++.+         .|....++..                +|.+|...|++++|+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~   74 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL---------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY   74 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence            456778899999999999999999999998         5777788888                999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCC--
Q 004829          539 KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT--  616 (728)
Q Consensus       539 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--  616 (728)
                      ..|++++++.+..       ..++..+|.+|...|++++|+.+|++++++        .|....+++.+|.+|...|+  
T Consensus        75 ~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           75 LFYKELLQKAPNN-------VDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence            9999999997665       678899999999999999999999999998        44456899999999987764  


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       617 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      ...+...|.+++..        .| ...+++.+|.++...|++++|+.+|++++++.
T Consensus       140 ~~~~~~~~~~~~~~--------~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          140 KKKLETDYKKLSSP--------TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHHHHHHC---CC--------CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHhCC--------Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            44556666655432        33 23467889999999999999999999999853

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.59  E-value=1.4e-11  Score=137.26  Aligned_cols=441  Identities=7%  Similarity=-0.041  Sum_probs=285.1

Q ss_pred             cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---hhHHHHHHH
Q 004829          214 AGLGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQ---YNEAIPVLE  290 (728)
Q Consensus       214 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~  290 (728)
                      ....+|.....+...+......+ +++.+...|++++..+         |.....|...+......|+   ++.+..+|+
T Consensus        58 ~l~~np~d~~~W~~yi~~~~~~~-~~~~aR~vyEraL~~f---------P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe  127 (679)
T 4e6h_A           58 MIEEQPTDIFLYVKLLKHHVSLK-QWKQVYETFDKLHDRF---------PLMANIWCMRLSLEFDKMEELDAAVIEPVLA  127 (679)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred             HHHHCcCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence            44557888888999999888886 8999999999999985         4445557677777888888   999999999


Q ss_pred             HhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCH----HHHH----HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-
Q 004829          291 RSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQI----ENSI----LCYTAGLEIQRQVLGETDHRVGETCRYVAEAH-  361 (728)
Q Consensus       291 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-  361 (728)
                      +++....   .+...    .+|..........++.    +++.    ..|++|+..    +|.-++....+|....... 
T Consensus       128 Ral~~~~---~~~sv----~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~----vG~~d~~s~~iW~~Yi~f~~  196 (679)
T 4e6h_A          128 RCLSKEL---GNNDL----SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK----CAIFEPKSIQFWNEYLHFLE  196 (679)
T ss_dssp             HHTCSSS---CCCCH----HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH----TTTTCSSCHHHHHHHHHHHH
T ss_pred             HHHHhcC---CCCCH----HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----hCcccccchHHHHHHHHHHH
Confidence            9997641   01221    2344444444444443    3444    566666554    4431222233443333322 


Q ss_pred             --------HHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHHH
Q 004829          362 --------VQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGL----------ICDSKGDYEAALEHYVLASMSM  423 (728)
Q Consensus       362 --------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~----------~~~~~g~~~~A~~~~~~al~~~  423 (728)
                              ..+++++.+..+|++++.+    +..........|...-.          +-....+|..|...+.......
T Consensus       197 ~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~  272 (679)
T 4e6h_A          197 HWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT  272 (679)
T ss_dssp             TCCCCSHHHHHHHHHHHHHHHHHHTTS----CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccccCcHHHHhHHHHHHHHHHHHHhC----ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence                    2344577888888888742    11111111111111110          0111123344444443322211


Q ss_pred             HhcCC--------------------ChhHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829          424 AANGH--------------------ELDVASIDCSIGDAYLSLAR---------FDEAIFSYHKALTAFKSAKGENHPAV  474 (728)
Q Consensus       424 ~~~~~--------------------~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~~~  474 (728)
                      .....                    .......|.....  +...+         .......|++++..        .|..
T Consensus       273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~--fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--------~p~~  342 (679)
T 4e6h_A          273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR--WESDNKLELSDDLHKARMTYVYMQAAQH--------VCFA  342 (679)
T ss_dssp             TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TTTC
T ss_pred             HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH--HHHhCCccccchhhHHHHHHHHHHHHHH--------cCCC
Confidence            11110                    0122233333333  33322         23456788999887        7778


Q ss_pred             HHHHHHHHHHHHHcCChHHHH-HHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc---
Q 004829          475 ASVFVRLADLYHKIGKLRDSK-SYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK---  550 (728)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---  550 (728)
                      ...++..+..+...|+.++|. ..|++|+...         |.....+..++.+....|+++.|...|++++.....   
T Consensus       343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~---------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~  413 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCI---------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA  413 (679)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999997 9999999874         223566888899999999999999999999986521   


Q ss_pred             -----CCCC-------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC-CH
Q 004829          551 -----TPGQ-------QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY-TI  617 (728)
Q Consensus       551 -----~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~  617 (728)
                           .+..       ......++...+.+..+.|+.+.|...|.+|++...   ..    ...++...|.+....+ ++
T Consensus       414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~---~~----~~~lyi~~A~lE~~~~~d~  486 (679)
T 4e6h_A          414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK---LV----TPDIYLENAYIEYHISKDT  486 (679)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG---GS----CTHHHHHHHHHHHTTTSCC
T ss_pred             hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CC----ChHHHHHHHHHHHHhCCCH
Confidence                 1110       002345677778888889999999999999986511   11    1234555666666655 59


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829          618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE  697 (728)
Q Consensus       618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~  697 (728)
                      +.|..+|+.+++.        .|.....+...+......|+.+.|..+|++++...     +........+......-..
T Consensus       487 e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~-----~~~~~~~~lw~~~~~fE~~  553 (679)
T 4e6h_A          487 KTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI-----SDSHLLKMIFQKVIFFESK  553 (679)
T ss_dssp             HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-----SSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHH
Confidence            9999999999998        44444566677778888999999999999999742     1112566778888888899


Q ss_pred             hCChhHHHHHHHHHHHhhcccc
Q 004829          698 AGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       698 ~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      .|+.+.+. ...+.+.+..|+.
T Consensus       554 ~G~~~~~~-~v~~R~~~~~P~~  574 (679)
T 4e6h_A          554 VGSLNSVR-TLEKRFFEKFPEV  574 (679)
T ss_dssp             TCCSHHHH-HHHHHHHHHSTTC
T ss_pred             cCCHHHHH-HHHHHHHHhCCCC
Confidence            99999998 9999998888864

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.59  E-value=2.6e-15  Score=135.31  Aligned_cols=147  Identities=11%  Similarity=0.133  Sum_probs=127.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHH
Q 004829          480 RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIA  559 (728)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  559 (728)
                      .||.++...|++++|+..+++++..         .|.....++.+|.+|...|++++|+.+|++++++.+..       .
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~---------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS---------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-------P   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS---------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Confidence            4788899999999999999998765         67788889999999999999999999999999997765       6


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHhcCCC
Q 004829          560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADL-FEEARTILEKEYGPY  638 (728)
Q Consensus       560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~  638 (728)
                      .++..+|.+|...|++++|+.+|++++++        .+....++..+|.+|...|++++|... +++++++        
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------  129 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------  129 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------
Confidence            78999999999999999999999999998        444568999999999999999887765 5999999        


Q ss_pred             ChhHHHHHHHHHHHHHHcCC
Q 004829          639 HHDTLGVYSNLAGTYDAMGR  658 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~  658 (728)
                      +|....++..++.++...|+
T Consensus       130 ~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          130 FPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             STTCHHHHHHHHHHHHTCCC
T ss_pred             CcCCHHHHHHHHHHHHHhCc
Confidence            88888889999999988886

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.58  E-value=4.5e-13  Score=129.81  Aligned_cols=191  Identities=10%  Similarity=0.034  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829          433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI  512 (728)
Q Consensus       433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (728)
                      +..++.+|..++..|++++|+..|++++...     ++.+....+++.+|.+|...|++++|+..|+++++....     
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-----   73 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-----   73 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----
Confidence            3456777888888888888888888887761     123344567788888888888888888888888877433     


Q ss_pred             CcHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC
Q 004829          513 PSEEIASGLIDIAAIYQS------------------MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN  574 (728)
Q Consensus       513 ~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~  574 (728)
                       .+....+++.+|.++..                  .|++++|+..|+++++..++...    ...++..++.+.     
T Consensus        74 -~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~----a~~a~~~l~~~~-----  143 (225)
T 2yhc_A           74 -HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY----TTDATKRLVFLK-----  143 (225)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT----HHHHHHHHHHHH-----
T ss_pred             -CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh----HHHHHHHHHHHH-----
Confidence             33345567777777765                  56777777777777766554421    111111111111     


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004829          575 YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD  654 (728)
Q Consensus       575 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~  654 (728)
                                             .........+|.+|...|++++|+..|+++++.     .|+++....+++.+|.+|.
T Consensus       144 -----------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~  195 (225)
T 2yhc_A          144 -----------------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-----YPDTQATRDALPLMENAYR  195 (225)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTSHHHHHHHHHHHHHHH
T ss_pred             -----------------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-----CcCCCccHHHHHHHHHHHH
Confidence                                   011234467899999999999999999999998     2345556689999999999


Q ss_pred             HcCChHHHHHHHHHHHH
Q 004829          655 AMGRIDDAIEILEYVVG  671 (728)
Q Consensus       655 ~~g~~~~A~~~~~~al~  671 (728)
                      .+|++++|+..++++..
T Consensus       196 ~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          196 QMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCcHHHHHHHHHHHh
Confidence            99999999999997776

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.57  E-value=1.1e-13  Score=148.47  Aligned_cols=153  Identities=13%  Similarity=0.081  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHH
Q 004829          521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL  599 (728)
Q Consensus       521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  599 (728)
                      ....+..+..+|+|++|+.++++++++.....+..+ .++.++.+||.+|..+|+|++|+.++++++++.+...+..++.
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            344555677899999999999999999999888765 7888999999999999999999999999999999998888999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      .+..+++||.+|..+|++++|+.+|++|+++.+..+|++||.+...+..|+.++..++.+++|...|.++.+..
T Consensus       392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.57  E-value=3.3e-13  Score=122.63  Aligned_cols=158  Identities=18%  Similarity=0.172  Sum_probs=142.1

Q ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 004829          347 DHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAAN  426 (728)
Q Consensus       347 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  426 (728)
                      .+..+.++..+|.++...|++++|+.++++++.+.+....  ....+.++..+|.++...|++++|+.++++++.+....
T Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            3566789999999999999999999999999999988654  34556789999999999999999999999999999888


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829          427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (728)
                      ++.+....++..+|.++...|++++|+.++++++.+....  .+.+....++..+|.++...|++++|+.++++++++.+
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999999999999999998776  34567788999999999999999999999999999976


Q ss_pred             CC
Q 004829          507 KP  508 (728)
Q Consensus       507 ~~  508 (728)
                      +.
T Consensus       161 ~~  162 (164)
T 3ro3_A          161 EV  162 (164)
T ss_dssp             TC
T ss_pred             Hh
Confidence            53

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.56  E-value=3.9e-13  Score=122.09  Aligned_cols=157  Identities=16%  Similarity=0.187  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004829          390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE  469 (728)
Q Consensus       390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  469 (728)
                      ...+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.++...|++++|+.++++++.+....  .
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~   83 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--K   83 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--C
Confidence            34567899999999999999999999999999988888888888999999999999999999999999999998776  3


Q ss_pred             CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829          470 NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG  549 (728)
Q Consensus       470 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  549 (728)
                      +.+....++..+|.++...|++++|+.++++++.+.....   +.+....++..+|.++...|++++|+.++++++++..
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK---DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc---chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            4566688999999999999999999999999999987643   4567788999999999999999999999999999876


Q ss_pred             cC
Q 004829          550 KT  551 (728)
Q Consensus       550 ~~  551 (728)
                      ..
T Consensus       161 ~~  162 (164)
T 3ro3_A          161 EV  162 (164)
T ss_dssp             TC
T ss_pred             Hh
Confidence            54

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.50  E-value=5.6e-13  Score=140.57  Aligned_cols=122  Identities=13%  Similarity=0.123  Sum_probs=117.2

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004829          571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA  650 (728)
Q Consensus       571 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La  650 (728)
                      ..|+|++|+.++++++++.....+..++..+.++.+||.+|..+|+|++|+.++++++.+.++.+|++||+++..+.+||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            46899999999999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 004829          651 GTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLA  692 (728)
Q Consensus       651 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La  692 (728)
                      .+|..+|++++|+.+|++|+++.+..+|++||.+.++..+|.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            999999999999999999999999999999999998887764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.50  E-value=4e-13  Score=116.67  Aligned_cols=117  Identities=12%  Similarity=0.086  Sum_probs=107.1

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829          514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG  593 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  593 (728)
                      +|..+..+.++|..|+..|+|++|+.+|++++++.+..       ..++.++|.+|..+|++++|+..|++++++     
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----   76 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-------AILYSNRAACLTKLMEFQRALDDCDTCIRL-----   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----
Confidence            68899999999999999999999999999999987655       678899999999999999999999999998     


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004829          594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY  653 (728)
Q Consensus       594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~  653 (728)
                         .+....++..+|.++..+|++++|+..|++++++        +|+...++..|+.++
T Consensus        77 ---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           77 ---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL  125 (126)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred             ---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence               4445689999999999999999999999999999        888888888888764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.49  E-value=1.2e-12  Score=131.12  Aligned_cols=229  Identities=10%  Similarity=0.038  Sum_probs=193.8

Q ss_pred             HHhCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHH
Q 004829          444 LSLAR-FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG--KLRDSKSYCENALKIYGKPNHGIPSEEIASG  520 (728)
Q Consensus       444 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  520 (728)
                      ...|. .++|+..+.++|.+        +|....+++..+.++..+|  ++++++.++..++...         |....+
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---------Pk~y~a  105 (306)
T 3dra_A           43 MKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---------EKNYQI  105 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---------TTCCHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---------cccHHH
Confidence            34444 47999999999999        9999999999999999999  9999999999999983         445577


Q ss_pred             HHHHHHHH----HHc---CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHH
Q 004829          521 LIDIAAIY----QSM---NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS--DSYNTLKSAISKFRT  591 (728)
Q Consensus       521 ~~~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~  591 (728)
                      |+..+.++    ...   +++++++.++.++++..++.       ..++...+.++...|.++  +++.++.++++.   
T Consensus       106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---  175 (306)
T 3dra_A          106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---  175 (306)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---
Confidence            88888888    666   78999999999999987776       678889999999999999  999999999987   


Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH-HHH
Q 004829          592 SGEKKSALFGIALNQMGLACVQRYT------INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD-AIE  664 (728)
Q Consensus       592 ~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~-A~~  664 (728)
                           ++....++...+.++...+.      ++++++++.+++.+        +|....+++.++.++...|+... ...
T Consensus       176 -----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~  242 (306)
T 3dra_A          176 -----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEE  242 (306)
T ss_dssp             -----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred             -----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHH
Confidence                 44456789999999998887      99999999999999        89999999999999999998655 444


Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh-hccc
Q 004829          665 ILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD-SNSQ  718 (728)
Q Consensus       665 ~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~-~~~~  718 (728)
                      ++.+++.+.     ..+|....++..|+.+|.+.|+.++|+ +.++.+.+ .+|-
T Consensus       243 ~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~-~~~~~l~~~~Dpi  291 (306)
T 3dra_A          243 FSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESR-TVYDLLKSKYNPI  291 (306)
T ss_dssp             HHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTCGG
T ss_pred             HHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhccChH
Confidence            666665421     124666778999999999999999999 99999886 4664

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.49  E-value=4.5e-12  Score=127.03  Aligned_cols=237  Identities=7%  Similarity=-0.058  Sum_probs=196.6

Q ss_pred             hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 004829          364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKG--DYEAALEHYVLASMSMAANGHELDVASIDCSIGD  441 (728)
Q Consensus       364 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  441 (728)
                      ....++|+.++.+++.+.|..        ..+++..+.++...|  ++++++..+..++..      .|....+|+..+.
T Consensus        46 ~e~s~~aL~~t~~~L~~nP~~--------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------nPk~y~aW~~R~~  111 (306)
T 3dra_A           46 EEYSERALHITELGINELASH--------YTIWIYRFNILKNLPNRNLYDELDWCEEIALD------NEKNYQIWNYRQL  111 (306)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------CTTCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCcHH--------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHH------CcccHHHHHHHHH
Confidence            344478999999999988765        346899999999999  999999999999876      5777788999998


Q ss_pred             HH----HHh---CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHcCCCCCC
Q 004829          442 AY----LSL---ARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLR--DSKSYCENALKIYGKPNHGI  512 (728)
Q Consensus       442 ~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~  512 (728)
                      ++    ...   +++++++.++.++++.        +|....++...+.++...|.++  +++.++.++++.        
T Consensus       112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--------  175 (306)
T 3dra_A          112 IIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--------  175 (306)
T ss_dssp             HHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--------
Confidence            88    667   7999999999999998        9999999999999999999999  999999999998        


Q ss_pred             CcHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHHH
Q 004829          513 PSEEIASGLIDIAAIYQSMNE------LEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSD-SYNTLKSA  585 (728)
Q Consensus       513 ~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a  585 (728)
                       ++....+|...+.++...+.      ++++++++.+++.+.+..       ..+++.++.++...|+... ...++.++
T Consensus       176 -d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n-------~SaW~y~~~ll~~~~~~~~~~~~~~~~~  247 (306)
T 3dra_A          176 -DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN-------PSTWNYLLGIHERFDRSITQLEEFSLQF  247 (306)
T ss_dssp             -CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-------HHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred             -CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC-------ccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence             44567789999999999887      999999999999987766       5688889999999998655 44455555


Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCCCChhHHHHHHHHHH
Q 004829          586 ISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART-ILEKEYGPYHHDTLGVYSNLAG  651 (728)
Q Consensus       586 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~La~  651 (728)
                      +.+-    . ..+....++..++.+|.+.|+.++|+++|+.+.+ +        +|.....+...+.
T Consensus       248 ~~~~----~-~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~--------Dpir~~yW~~~~~  301 (306)
T 3dra_A          248 VDLE----K-DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY--------NPIRSNFWDYQIS  301 (306)
T ss_dssp             EEGG----G-TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CGGGHHHHHHHHH
T ss_pred             Hhcc----C-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc--------ChHHHHHHHHHHh
Confidence            5431    0 0122356899999999999999999999999886 5        7777777666554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.49  E-value=2.4e-13  Score=118.06  Aligned_cols=117  Identities=16%  Similarity=0.225  Sum_probs=105.6

Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE  634 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  634 (728)
                      .+..+..+.++|..|+..|+|++|+.+|++++++        .+....++.++|.+|..+|++++|+..|++++++    
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----   76 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL----   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence            4566788899999999999999999999999988        4445689999999999999999999999999999    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829          635 YGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL  695 (728)
Q Consensus       635 ~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  695 (728)
                          +|....+++.+|.+|..+|++++|+..|++++++        +|+...++..|+.++
T Consensus        77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL  125 (126)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred             ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence                8888899999999999999999999999999996        377777888887764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.48  E-value=6.1e-13  Score=140.72  Aligned_cols=131  Identities=12%  Similarity=-0.046  Sum_probs=124.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829          568 MYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYS  647 (728)
Q Consensus       568 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  647 (728)
                      -+..+|+|++|+..+++++++.....+..++..+.++.++|.+|..+|+|++|+.++++++.+.+..+|++||.++..++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            35578999999999999999988887888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829          648 NLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA  698 (728)
Q Consensus       648 ~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  698 (728)
                      +||.+|..+|++++|+.+|++|+++.+..+|++||.+..++.+|+.+...+
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.46  E-value=9e-13  Score=132.79  Aligned_cols=170  Identities=12%  Similarity=0.008  Sum_probs=148.3

Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .|.....+..+|..+...|++++|+..|++++..         .|....++..+|.++...|++++|+..|++++...+.
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~  183 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQL---------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD  183 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence            3556778899999999999999999999999999         3445678999999999999999999999998765432


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                             ........+..+...++.++|+..|++++..        .+....+++.+|.++...|++++|+..|++++..
T Consensus       184 -------~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          184 -------TRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             -------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------hHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence                   2344556677788899999999999999988        4445689999999999999999999999999999


Q ss_pred             HHHhcCCCChhH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          631 LEKEYGPYHHDT--LGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       631 ~~~~~~~~~~~~--~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                              +|..  ..++..|+.++..+|+.++|...|++++..
T Consensus       249 --------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          249 --------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             --------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             --------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence                    7776  779999999999999999999999999874

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.46  E-value=2.1e-13  Score=126.57  Aligned_cols=165  Identities=10%  Similarity=0.008  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829          475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ  554 (728)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  554 (728)
                      ...++.+|..+...|++++|+..|++++..         .|....++..+|.++...|++++|+..|++++...+ .   
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~---   72 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE---------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D---   72 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH---------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C---
Confidence            445788999999999999999999999998         466788999999999999999999999999876654 2   


Q ss_pred             CCcHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          555 QSTIAGIEAQMGVMY-YMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       555 ~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                          ......++.+. ...+...+|+..++++++.        .+....+++.+|.++...|++++|+..|+++++.   
T Consensus        73 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---  137 (176)
T 2r5s_A           73 ----NSYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV---  137 (176)
T ss_dssp             ----HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred             ----hHHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---
Confidence                12233334332 2334455689999999987        3445688999999999999999999999999988   


Q ss_pred             hcCCCChhH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          634 EYGPYHHDT--LGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       634 ~~~~~~~~~--~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                           +|..  ..++..+|.++..+|+.++|+..|++++..
T Consensus       138 -----~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          138 -----NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             -----CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             -----CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence                 6654  458999999999999999999999999863

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.45  E-value=7.1e-13  Score=122.91  Aligned_cols=168  Identities=14%  Similarity=0.007  Sum_probs=134.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhh
Q 004829          220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLE  299 (728)
Q Consensus       220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  299 (728)
                      .....++.+|..++..| ++++|+..|++++...         |....++..+|.++...|++++|+..|++++...   
T Consensus         4 ~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---   70 (176)
T 2r5s_A            4 SPDEQLLKQVSELLQQG-EHAQALNVIQTLSDEL---------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---   70 (176)
T ss_dssp             --CTTHHHHHHHHHHTT-CHHHHHHHHHTSCHHH---------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---
T ss_pred             CHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---
Confidence            33456889999999997 9999999999999864         5567789999999999999999999999998764   


Q ss_pred             cCCchhHhHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829          300 DGQDHALAKFAGCMQLGDTY-AMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMAL  378 (728)
Q Consensus       300 ~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  378 (728)
                        + .+..    +..++.+. ...+...+|+..|++++..        +|....+++.+|.++...|++++|+..|++++
T Consensus        71 --p-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  135 (176)
T 2r5s_A           71 --Q-DNSY----KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNIL  135 (176)
T ss_dssp             --C-CHHH----HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --C-ChHH----HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence              3 2221    23333332 2333445689999999998        78888999999999999999999999999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          379 DIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASM  421 (728)
Q Consensus       379 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  421 (728)
                      .+.|....      ..++..+|.++...|++++|+..|++++.
T Consensus       136 ~~~p~~~~------~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          136 KVNLGAQD------GEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             TTCTTTTT------THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HhCcccCh------HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            87654322      13588899999999999999999998874

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.44  E-value=8e-13  Score=129.14  Aligned_cols=210  Identities=11%  Similarity=-0.033  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          476 SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI-------AAIYQSMNELEQAVKLLNKALKIY  548 (728)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~  548 (728)
                      ..++..|.-+ ..+++..|...|.+++.+         .|..+.+|..+       +.++...++..+++..+++++.+.
T Consensus         8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~---------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~   77 (282)
T 4f3v_A            8 ASLFESAVSM-LPMSEARSLDLFTEITNY---------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS   77 (282)
T ss_dssp             HHHHHHHHHH-TTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC
T ss_pred             HHHHHHHhcc-cCCCHHHHHHHHHHHHHh---------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3445556665 589999999999999999         56688999999       899999999999999999999876


Q ss_pred             hcCCCCCCc--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc
Q 004829          549 GKTPGQQST--------------IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR  614 (728)
Q Consensus       549 ~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  614 (728)
                      +........              ...+...++.++...|+|++|.+.|...+..        .+... ..+.+|.++++.
T Consensus        78 p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~  148 (282)
T 4f3v_A           78 MSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAA  148 (282)
T ss_dssp             GGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHT
T ss_pred             hhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHc
Confidence            655333222              2455667899999999999999998877642        23334 889999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHH
Q 004829          615 YTINEAADLFEEARTILEKEYGPYHHDT-LGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD-VEDEKRRLA  692 (728)
Q Consensus       615 g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~La  692 (728)
                      +++++|+.+|+++...       .+|.. ..+++.||.++..+|++++|+.+|++++.      ++..|. ..++.+.+|
T Consensus       149 ~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~g  215 (282)
T 4f3v_A          149 ERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLA  215 (282)
T ss_dssp             TCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHH
Confidence            9999999999876553       13332 45899999999999999999999999974      333265 778999999


Q ss_pred             HHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          693 ELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       693 ~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                      .++..+|+.++|. ..++.++..+|.
T Consensus       216 laL~~lGr~deA~-~~l~~a~a~~P~  240 (282)
T 4f3v_A          216 MARRSQGNESAAV-ALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHTCHHHHH-HHHHHHHHHSCC
T ss_pred             HHHHHcCCHHHHH-HHHHHHHhcCCc
Confidence            9999999999999 999999999886

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.44  E-value=3.2e-12  Score=122.45  Aligned_cols=177  Identities=16%  Similarity=0.087  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH
Q 004829          450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ  529 (728)
Q Consensus       450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~  529 (728)
                      .+|+.+|+++.+.          ..+.+++.||.+|...+++++|+.+|+++++.-           .+.+++.||.+|.
T Consensus         3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----------~~~a~~~lg~~y~   61 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----------DGDALALLAQLKI   61 (212)
T ss_dssp             -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Confidence            3577788888764          235779999999999999999999999998751           3578899999999


Q ss_pred             HcC----CHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Q 004829          530 SMN----ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYM----TGNYSDSYNTLKSAISKFRTSGEKKSALFG  601 (728)
Q Consensus       530 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  601 (728)
                      . +    ++++|+.+|+++.+.     +    ...++++||.+|..    .+++++|+.+|+++++.      ......+
T Consensus        62 ~-~g~~~~~~~A~~~~~~A~~~-----g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~  125 (212)
T 3rjv_A           62 R-NPQQADYPQARQLAEKAVEA-----G----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAV  125 (212)
T ss_dssp             S-STTSCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHH
T ss_pred             c-CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchH
Confidence            8 7    999999999999653     1    15678899999988    89999999999999864      1111346


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHH
Q 004829          602 IALNQMGLACVQ----RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM-G-----RIDDAIEILEYVVG  671 (728)
Q Consensus       602 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~-g-----~~~~A~~~~~~al~  671 (728)
                      .+++.||.+|..    .+++++|+.+|+++++.      +.+   ..++++||.+|... |     ++++|+.+|+++++
T Consensus       126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~  196 (212)
T 3rjv_A          126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL  196 (212)
T ss_dssp             HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            899999999999    88999999999999875      112   33789999999864 3     89999999999998


Q ss_pred             H
Q 004829          672 M  672 (728)
Q Consensus       672 ~  672 (728)
                      .
T Consensus       197 ~  197 (212)
T 3rjv_A          197 E  197 (212)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.43  E-value=1.1e-12  Score=132.05  Aligned_cols=165  Identities=12%  Similarity=0.059  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829          517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK  596 (728)
Q Consensus       517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  596 (728)
                      ....+..+|..+...|++++|+..|++++...+..       ..++..+|.++..+|++++|+..+++++..        
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--------  180 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQ--------  180 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--------
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchh--------
Confidence            45678899999999999999999999999997766       578899999999999999999999998765        


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK  676 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~  676 (728)
                      .+.........+..+...++.++|+..|++++..        +|+...+++.||.+|...|++++|+..|++++..    
T Consensus       181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~----  248 (287)
T 3qou_A          181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX----  248 (287)
T ss_dssp             GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----
Confidence            1223455666777788889999999999999999        8888999999999999999999999999999995    


Q ss_pred             cCCCChHH--HHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004829          677 LGTANPDV--EDEKRRLAELLKEAGRVRNRKSRSLVTFL  713 (728)
Q Consensus       677 ~~~~~p~~--~~~~~~La~~~~~~g~~~~A~~~~l~~ll  713 (728)
                          +|..  ..++..|+.++..+|+.++|. ..++..+
T Consensus       249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a~-~~~r~al  282 (287)
T 3qou_A          249 ----DLTAADGQTRXTFQEILAALGTGDALA-SXYRRQL  282 (287)
T ss_dssp             ----CTTGGGGHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred             ----ccccccchHHHHHHHHHHHcCCCCcHH-HHHHHHH
Confidence                3555  789999999999999999999 5555544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.42  E-value=5.5e-12  Score=120.75  Aligned_cols=177  Identities=14%  Similarity=0.009  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHH
Q 004829          240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTY  319 (728)
Q Consensus       240 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  319 (728)
                      .+|+.+|+++...           ..+.+++.+|.+|...+++++|+.+|+++++..       +    ..+++.||.+|
T Consensus         3 ~eA~~~~~~aa~~-----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-------~----~~a~~~lg~~y   60 (212)
T 3rjv_A            3 TEPGSQYQQQAEA-----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-------D----GDALALLAQLK   60 (212)
T ss_dssp             -CTTHHHHHHHHT-----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------C----HHHHHHHHHHT
T ss_pred             chHHHHHHHHHHC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-------C----HHHHHHHHHHH
Confidence            4678888888763           236678999999999999999999999998642       2    23589999999


Q ss_pred             HHhC----CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCCCcHH
Q 004829          320 AMLG----QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ----SLQFDEAEKICQMALDIHRENTSPASIE  391 (728)
Q Consensus       320 ~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~  391 (728)
                      .. +    ++++|+.+|+++.+.          ....+++.||.+|..    .+++++|+.+|+++.+..+.      ..
T Consensus        61 ~~-~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~------~~  123 (212)
T 3rjv_A           61 IR-NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES------DA  123 (212)
T ss_dssp             TS-STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS------HH
T ss_pred             Hc-CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC------cc
Confidence            98 7    999999999999643          456789999999988    88999999999999864321      12


Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHH
Q 004829          392 EAADRRLMGLICDS----KGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSL-A-----RFDEAIFSYHKALT  461 (728)
Q Consensus       392 ~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~  461 (728)
                      .+.+++.||.+|..    .+++++|+.+|++++..       +....++++||.+|... |     ++++|+.+|+++++
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~  196 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL  196 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            24579999999999    88999999999999754       12234789999999875 3     89999999999998


Q ss_pred             H
Q 004829          462 A  462 (728)
Q Consensus       462 ~  462 (728)
                      .
T Consensus       197 ~  197 (212)
T 3rjv_A          197 E  197 (212)
T ss_dssp             H
T ss_pred             c
Confidence            7

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.41  E-value=1.5e-12  Score=145.20  Aligned_cols=165  Identities=12%  Similarity=0.060  Sum_probs=127.4

Q ss_pred             hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Q 004829          446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIA  525 (728)
Q Consensus       446 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la  525 (728)
                      .|++++|+..|+++++.        .|....++..+|.++...|++++|+.+|++++++         .+....++..+|
T Consensus         2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg   64 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---------HPGHPEAVARLG   64 (568)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------STTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHH
Confidence            47899999999999988        7777889999999999999999999999999987         334567899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 004829          526 AIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALN  605 (728)
Q Consensus       526 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  605 (728)
                      .+|..+|++++|+.+|++++++.+..       ..++..+|.+|...|++++|+.+|++++++        .+....++.
T Consensus        65 ~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~  129 (568)
T 2vsy_A           65 RVRWTQQRHAEAAVLLQQASDAAPEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITA  129 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence            99999999999999999999986554       578899999999999999999999999988        333457899


Q ss_pred             HHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004829          606 QMGLACVQR---YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA  650 (728)
Q Consensus       606 ~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La  650 (728)
                      .+|.++...   |++++|+..|+++++.        +|.....+..++
T Consensus       130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~  169 (568)
T 2vsy_A          130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ--------GVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHTTCCTTHHHHHHHHHHHHHH--------TCCCSCHHHHTT
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHhc--------CCcccChHHHhC
Confidence            999999999   9999999999999998        555444555555

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.41  E-value=1.5e-12  Score=145.23  Aligned_cols=159  Identities=10%  Similarity=0.041  Sum_probs=126.6

Q ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 004829          531 MNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA  610 (728)
Q Consensus       531 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  610 (728)
                      .|++++|+.+|+++++..+..       ..++..+|.+|...|++++|+.+|++++++        .+....++..+|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~   66 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRV   66 (568)
T ss_dssp             -------------------CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            478999999999999886654       578899999999999999999999999986        33346789999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004829          611 CVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR  690 (728)
Q Consensus       611 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~  690 (728)
                      |..+|++++|+.+|++++++        +|....++.++|.+|..+|++++|+.+|++++++        +|....++..
T Consensus        67 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~  130 (568)
T 2vsy_A           67 RWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQ  130 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence            99999999999999999998        7888889999999999999999999999999985        3667789999


Q ss_pred             HHHHHHHh---CChhHHHHHHHHHHHhhcccccc
Q 004829          691 LAELLKEA---GRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       691 La~~~~~~---g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                      ++.++..+   |++++|. ..++.+++.+|....
T Consensus       131 l~~~~~~~~~~g~~~~A~-~~~~~al~~~p~~~~  163 (568)
T 2vsy_A          131 LLNWRRRLCDWRALDVLS-AQVRAAVAQGVGAVE  163 (568)
T ss_dssp             HHHHHHHTTCCTTHHHHH-HHHHHHHHHTCCCSC
T ss_pred             HHHHHHHhhccccHHHHH-HHHHHHHhcCCcccC
Confidence            99999999   9999999 999999999887643

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.40  E-value=1.9e-11  Score=119.36  Aligned_cols=220  Identities=13%  Similarity=0.001  Sum_probs=173.2

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-------HHHHHHcCChhHHHHHHHHhhhh
Q 004829          223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVL-------AAIHCSLGQYNEAIPVLERSVEI  295 (728)
Q Consensus       223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~  295 (728)
                      ..++..|.-+ ..+ ++.+|...|.+++.+         +|..+.+|..+       +.++...+++.+++..+++++.+
T Consensus         8 ~~~~~~~~~~-~~~-d~~~A~~~F~~a~~~---------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l   76 (282)
T 4f3v_A            8 ASLFESAVSM-LPM-SEARSLDLFTEITNY---------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI   76 (282)
T ss_dssp             HHHHHHHHHH-TTT-CHHHHHHHHHHHHHH---------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC
T ss_pred             HHHHHHHhcc-cCC-CHHHHHHHHHHHHHh---------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4456666665 464 999999999999987         36678889989       89999999999999999999997


Q ss_pred             hhhhcCCchh------------HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829          296 PVLEDGQDHA------------LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ  363 (728)
Q Consensus       296 ~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  363 (728)
                      ..........            ...-.+.+.++.++...|+|++|...|..++..        .|... +.+.+|.+++.
T Consensus        77 ~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~  147 (282)
T 4f3v_A           77 SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGA  147 (282)
T ss_dssp             CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHH
T ss_pred             ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHH
Confidence            6433222211            011235778899999999999999999987764        67777 89999999999


Q ss_pred             hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh-HHHHHHHHHHH
Q 004829          364 SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD-VASIDCSIGDA  442 (728)
Q Consensus       364 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~  442 (728)
                      .++|++|+.+|+.+....      +......+++.+|.++..+|++++|+.+|++++.    ....|. ...+++.+|.+
T Consensus       148 ~~r~~dA~~~l~~a~~~~------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~gla  217 (282)
T 4f3v_A          148 AERWTDVIDQVKSAGKWP------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYLAMA  217 (282)
T ss_dssp             TTCHHHHHHHHTTGGGCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhhccC------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHH
Confidence            999999999998654321      1122345789999999999999999999999862    222144 67799999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004829          443 YLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRL  481 (728)
Q Consensus       443 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  481 (728)
                      +..+|+.++|...|++++..        +|. ..+...|
T Consensus       218 L~~lGr~deA~~~l~~a~a~--------~P~-~~~~~aL  247 (282)
T 4f3v_A          218 RRSQGNESAAVALLEWLQTT--------HPE-PKVAAAL  247 (282)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--------SCC-HHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhc--------CCc-HHHHHHH
Confidence            99999999999999999998        666 5554444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.38  E-value=1.9e-12  Score=133.58  Aligned_cols=163  Identities=10%  Similarity=0.049  Sum_probs=139.4

Q ss_pred             HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC--------cH
Q 004829          487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS--------TI  558 (728)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~  558 (728)
                      .++++++|+..+++++..         .+..+.++..+|.+++..|++++|+.+|++++.+.+.......        ..
T Consensus       125 ~L~~~~~A~~~~~~a~~~---------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~  195 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEE---------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR  195 (336)
T ss_dssp             EEEEEECCCCGGGCCHHH---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHH---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence            456777888888887776         5678899999999999999999999999999999876532111        22


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                      ..++.++|.+|..+|++++|+.+|++++++        .+....+++.+|.+|..+|++++|+.+|++++++        
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------  259 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------  259 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence            578899999999999999999999999998        3445689999999999999999999999999999        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHH
Q 004829          639 HHDTLGVYSNLAGTYDAMGRIDDA-IEILEYVVGMRE  674 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~~~~A-~~~~~~al~~~~  674 (728)
                      +|....++..++.++..+|++++| ...|++++....
T Consensus       260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  296 (336)
T 1p5q_A          260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA  296 (336)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888999999999999999999 557777776543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.38  E-value=3.9e-12  Score=113.85  Aligned_cols=105  Identities=10%  Similarity=-0.003  Sum_probs=95.9

Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE  632 (728)
Q Consensus       553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  632 (728)
                      ...+....+++.+|.++...|++++|+.+|++++.+        .|....++..+|.+|..+|++++|+.+|++++.+  
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--   99 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--   99 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence            344556788999999999999999999999999998        4555789999999999999999999999999999  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          633 KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       633 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                            +|+...+++++|.+|..+|++++|+.+|++++++.
T Consensus       100 ------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          100 ------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             ------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                  88888899999999999999999999999999964

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.37  E-value=6.2e-13  Score=119.07  Aligned_cols=106  Identities=8%  Similarity=0.034  Sum_probs=98.5

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK  676 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~  676 (728)
                      .+....+++.+|.++...|++++|+.+|++++.+        +|....++.++|.+|..+|++++|+.+|++++.+.   
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---  100 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---  100 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---
Confidence            5667889999999999999999999999999999        88888999999999999999999999999999964   


Q ss_pred             cCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829          677 LGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       677 ~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                           |+...+++++|.+|..+|++++|+ ..++.++...|+.
T Consensus       101 -----P~~~~~~~~lg~~~~~lg~~~eA~-~~~~~al~l~~~~  137 (151)
T 3gyz_A          101 -----KNDYTPVFHTGQCQLRLKAPLKAK-ECFELVIQHSNDE  137 (151)
T ss_dssp             -----SSCCHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCCH
T ss_pred             -----CCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCH
Confidence                 667789999999999999999999 9999999988764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.37  E-value=6.6e-13  Score=136.98  Aligned_cols=163  Identities=14%  Similarity=0.151  Sum_probs=135.0

Q ss_pred             HcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-------cHHHHH
Q 004829          530 SMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK-------SALFGI  602 (728)
Q Consensus       530 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~  602 (728)
                      .++++++|+..|++++...+..       +.++..+|.+|+..|++++|+.+|++++.+........       .+....
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~-------a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  197 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQ-------STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA  197 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence            4566777777777777665443       67889999999999999999999999999843321100       112257


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP  682 (728)
Q Consensus       603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p  682 (728)
                      ++.++|.+|..+|++++|+.+|++++.+        +|....+++++|.+|..+|++++|+.+|++++++        +|
T Consensus       198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P  261 (336)
T 1p5q_A          198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP  261 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence            8999999999999999999999999999        8888899999999999999999999999999996        36


Q ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829          683 DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS  715 (728)
Q Consensus       683 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~  715 (728)
                      ....++..++.++..+|++++|....++.++..
T Consensus       262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777899999999999999999965666666544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.36  E-value=2.2e-09  Score=119.59  Aligned_cols=412  Identities=10%  Similarity=-0.032  Sum_probs=257.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHH
Q 004829          240 QKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTY  319 (728)
Q Consensus       240 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~  319 (728)
                      .+-+..+++++..         +|.....|..+.......+.++.+...|++++..+     +...    ..|...+..-
T Consensus        49 ~d~i~~lE~~l~~---------np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-----P~~~----~lW~~Yi~~E  110 (679)
T 4e6h_A           49 SDVIGKLNDMIEE---------QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-----PLMA----NIWCMRLSLE  110 (679)
T ss_dssp             SCHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---------CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHH
Confidence            4455566666653         24456678888888888999999999999999886     3332    2377777777


Q ss_pred             HHhCC---HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHH-cCCC
Q 004829          320 AMLGQ---IENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQF--------DEAEKICQMALDIHRE-NTSP  387 (728)
Q Consensus       320 ~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~~~-~~~~  387 (728)
                      ...++   ++.+..+|++++....     ..| ....|..........++.        +.....|+.|+..... ..  
T Consensus       111 ~~~~~~~~~~~v~~lfeRal~~~~-----~~~-sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~--  182 (679)
T 4e6h_A          111 FDKMEELDAAVIEPVLARCLSKEL-----GNN-DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP--  182 (679)
T ss_dssp             HTC--CCCHHHHHHHHHHHTCSSS-----CCC-CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS--
T ss_pred             HhhCCcchHHHHHHHHHHHHHhcC-----CCC-CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc--
Confidence            77888   9999999999998721     013 233555555444444443        3344777777765543 22  


Q ss_pred             CcHHHHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH-------------HHH
Q 004829          388 ASIEEAADRRLMGLIC---------DSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDA-------------YLS  445 (728)
Q Consensus       388 ~~~~~a~~~~~lg~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-------------~~~  445 (728)
                      ...   .+|.......         ..+++.+.+...|.+++.+    +.. ....+|......             -..
T Consensus       183 ~s~---~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~-~~~~~w~~Y~~fe~~~~~~~a~~~~~e~  254 (679)
T 4e6h_A          183 KSI---QFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMD-CLESMWQRYTQWEQDVNQLTARRHIGEL  254 (679)
T ss_dssp             SCH---HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS----CCS-SHHHHHHHHHHHHHHHCTTTHHHHHHHH
T ss_pred             cch---HHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC----ccH-HHHHHHHHHHHHHHhcCcchHHHHHHHh
Confidence            221   1232222221         2334567788888887632    111 111222111111             011


Q ss_pred             hCCHHHHHHHHHHHHHHHHHhc---CC---------------CCHHHHHHHHHHHHHHHHcC-------ChHHHHHHHHH
Q 004829          446 LARFDEAIFSYHKALTAFKSAK---GE---------------NHPAVASVFVRLADLYHKIG-------KLRDSKSYCEN  500 (728)
Q Consensus       446 ~g~~~~A~~~~~~al~~~~~~~---~~---------------~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~  500 (728)
                      ..+|+.|...+.+.-.+...+.   ..               ........|......-...+       ........|++
T Consensus       255 ~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~  334 (679)
T 4e6h_A          255 SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQ  334 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHH
Confidence            1233444444433222211110   00               01122333333333222211       12345678999


Q ss_pred             HHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Q 004829          501 ALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV-KLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSY  579 (728)
Q Consensus       501 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  579 (728)
                      ++..+         +....+|...+..+...|+.++|. ..|++|+...+..       ..++..++.+....|++++|.
T Consensus       335 aL~~~---------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s-------~~Lwl~~a~~ee~~~~~e~aR  398 (679)
T 4e6h_A          335 AAQHV---------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS-------AVLAFSLSEQYELNTKIPEIE  398 (679)
T ss_dssp             HHHHT---------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHc---------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHHH
Confidence            99884         335678899999999999999997 9999999876644       456677889999999999999


Q ss_pred             HHHHHHHHHHHHh-------CCCC-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004829          580 NTLKSAISKFRTS-------GEKK-------SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV  645 (728)
Q Consensus       580 ~~~~~al~~~~~~-------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  645 (728)
                      ..|++++......       .+..       ......+|...+.+....|+.+.|...|.+|++..       .+....+
T Consensus       399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~l  471 (679)
T 4e6h_A          399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPDI  471 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTHH
T ss_pred             HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChHH
Confidence            9999999864211       1100       01234577778888888899999999999998751       0111235


Q ss_pred             HHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcc
Q 004829          646 YSNLAGTYDAMG-RIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNS  717 (728)
Q Consensus       646 ~~~La~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~  717 (728)
                      +...|.+....+ +++.|..+|+++++.+        |.....+...+......|+.+.|. ..++.++...+
T Consensus       472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR-~lferal~~~~  535 (679)
T 4e6h_A          472 YLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVK-SLFESSIDKIS  535 (679)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHTTTSS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHH-HHHHHHHHhcC
Confidence            556676666665 4999999999999975        444455667778888999999999 99999888766

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.36  E-value=4.3e-11  Score=103.93  Aligned_cols=109  Identities=14%  Similarity=0.179  Sum_probs=97.3

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829          514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG  593 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  593 (728)
                      ..+.+.++.++|..++..|+|++|+.+|++++++.+..       ..++.++|.+|..+|++++|+..|++++++.....
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            34577889999999999999999999999999987655       67889999999999999999999999999877654


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      .. ....+.++..+|.++..+|++++|+.+|++++..
T Consensus        77 ~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           77 AD-YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             CC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hh-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            43 4456789999999999999999999999999987

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.36  E-value=9.9e-12  Score=108.02  Aligned_cols=109  Identities=15%  Similarity=0.151  Sum_probs=99.3

Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                      .++.+.++.++|..++..|+|++|+.+|++++++         .|..+.++.++|.+|..+|++++|+..|++++++.+.
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~   74 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE   74 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence            3566788999999999999999999999999999         3445778999999999999999999999999999998


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                      ........+.++..+|.++..+|++++|+.+|++++..
T Consensus        75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            86666677889999999999999999999999999976

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.35  E-value=4.6e-12  Score=113.45  Aligned_cols=114  Identities=11%  Similarity=0.044  Sum_probs=98.9

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829          557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG  636 (728)
Q Consensus       557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  636 (728)
                      .....++.+|.++...|++++|+..|++++.+        .+....++..+|.++...|++++|+.+|++++.+      
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------   84 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM------   84 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence            34677889999999999999999999999987        3445678999999999999999999999999999      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004829          637 PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRL  691 (728)
Q Consensus       637 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L  691 (728)
                        +|+...+++++|.+|..+|++++|+.+|++++++.     +.+|.........
T Consensus        85 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~  132 (148)
T 2vgx_A           85 --DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFXELSTRV  132 (148)
T ss_dssp             --STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGHHHHHHH
T ss_pred             --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcchHHHHHH
Confidence              77778899999999999999999999999999976     4566654444333

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.34  E-value=2.3e-11  Score=106.25  Aligned_cols=134  Identities=18%  Similarity=0.279  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYH  639 (728)
Q Consensus       560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  639 (728)
                      .++..+|.++...|++++|+.++++++..        .+....++..+|.++...|++++|+.+|++++..        .
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence            35678999999999999999999999876        1223567889999999999999999999999988        6


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                      |....++..+|.++...|++++|+.++++++...        |....++..++.++...|++++|. ..++.++...|.
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~  135 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPR  135 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHSTT
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHccHHHHH-HHHHHHHccCCC
Confidence            6667789999999999999999999999999852        555678899999999999999999 899988887764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.33  E-value=4.7e-11  Score=104.24  Aligned_cols=131  Identities=20%  Similarity=0.339  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH
Q 004829          519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA  598 (728)
Q Consensus       519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  598 (728)
                      .++..+|.++...|++++|+.++++++...+..       ..++..+|.++...|++++|+.++++++...        +
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~   66 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------P   66 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------T
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------C
Confidence            467889999999999999999999999875432       5677889999999999999999999998761        2


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      ....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|..+|++++.+
T Consensus        67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            23467889999999999999999999999988        6666778999999999999999999999999874

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.33  E-value=4.8e-11  Score=125.82  Aligned_cols=122  Identities=7%  Similarity=0.016  Sum_probs=114.1

Q ss_pred             HHcCCHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004829          529 QSMNELEQAVKLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM  607 (728)
Q Consensus       529 ~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  607 (728)
                      ...|+|++|+.+|++++++.....+..+ .++.++.+||.+|..+|+|++|+.++++++++.+...+..++..+..+++|
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            3568999999999999999998877765 788899999999999999999999999999999999998999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004829          608 GLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA  650 (728)
Q Consensus       608 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La  650 (728)
                      |.+|..+|++++|+.+|++|+++....+|++||.+..+..+|.
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            9999999999999999999999999999999999988877664

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.32  E-value=1.3e-10  Score=116.91  Aligned_cols=228  Identities=9%  Similarity=0.035  Sum_probs=184.7

Q ss_pred             HHHhCCHH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHcCCCCC
Q 004829          443 YLSLARFD-EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK----------LRDSKSYCENALKIYGKPNHG  511 (728)
Q Consensus       443 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~  511 (728)
                      ....|.+. +|+.++.+++.+        +|....+++..+.++..++.          +++++.++..++..       
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-------  103 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------  103 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-------
Confidence            34566665 799999999998        99999999999999988776          68999999999988       


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 004829          512 IPSEEIASGLIDIAAIYQSMNE--LEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN-YSDSYNTLKSAISK  588 (728)
Q Consensus       512 ~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~  588 (728)
                        +|....+|...+.++...++  +++++.++.+++++.+..       ..++...+.+....|. +++++.++.+++..
T Consensus       104 --~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~  174 (331)
T 3dss_A          104 --NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR  174 (331)
T ss_dssp             --CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence              44567889999999999994  899999999999987766       5788889999999998 69999999999987


Q ss_pred             HHHhCCCCcHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004829          589 FRTSGEKKSALFGIALNQMGLACVQR--------------YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD  654 (728)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~  654 (728)
                              ++....++..++.++...              +.++++++++.+++.+        +|+...+++.+..++.
T Consensus       175 --------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          175 --------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLG  238 (331)
T ss_dssp             --------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHH
T ss_pred             --------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence                    344457888888888876              4689999999999999        8888889987766666


Q ss_pred             Hc-----------CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---hCChhHHHHHHHHHHHhhcccc
Q 004829          655 AM-----------GRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE---AGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       655 ~~-----------g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~---~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      ..           +.++++++++++++++.        |+...++..++.+...   .|..++.. ..+..+++.+|-.
T Consensus       239 ~~~~~~~~~~~~~~~l~~el~~~~elle~~--------pd~~w~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~Dp~r  308 (331)
T 3dss_A          239 AGSGRCELSVEKSTVLQSELESCKELQELE--------PENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPMR  308 (331)
T ss_dssp             SSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTTTHHHHH-HHHHHHHHHCGGG
T ss_pred             hccCccccchHHHHHHHHHHHHHHHHHhhC--------cccchHHHHHHHHHHhhcccccHHHHH-HHHHHHHHhCcch
Confidence            55           35678888888888753        5556666666554433   56677777 8999999998864

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.32  E-value=4.4e-11  Score=126.50  Aligned_cols=131  Identities=9%  Similarity=-0.011  Sum_probs=121.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Q 004829          526 AIYQSMNELEQAVKLLNKALKIYGKTPGQQS-TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIAL  604 (728)
Q Consensus       526 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  604 (728)
                      .-+..+|++++|+..+++++++.....+..+ .++.++.++|.+|..+|+|++|+.++++++.+.+...+..++..+..+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3455789999999999999999888777654 778899999999999999999999999999999999888899999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829          605 NQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       605 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~  656 (728)
                      ++||.+|..+|++++|+.+|++|+++++..+|++||.+..++.+|+.+...+
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999887654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.31  E-value=5.7e-12  Score=119.26  Aligned_cols=166  Identities=11%  Similarity=0.076  Sum_probs=121.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc-
Q 004829          479 VRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST-  557 (728)
Q Consensus       479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-  557 (728)
                      ...+......|++++|.+.+......         .+..+..+..+|.+++..|++++|+.+|++++.+.+..+..... 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   78 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEE---------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI   78 (198)
T ss_dssp             --------------CCCSGGGCCHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh
Confidence            34455666778888887777755444         45577889999999999999999999999999987765322211 


Q ss_pred             --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          558 --------IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART  629 (728)
Q Consensus       558 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  629 (728)
                              ...++.++|.+|..+|++++|+.++++++.+        .+....+++.+|.+|..+|++++|+.+|++++.
T Consensus        79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A           79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                    1368889999999999999999999999987        333467899999999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 004829          630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI-EILEYV  669 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~-~~~~~a  669 (728)
                      +        +|....++..++.++..+++..++. ..|.+.
T Consensus       151 ~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          151 L--------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             H--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9        7888889999999999988887776 334433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.31  E-value=6.3e-11  Score=108.02  Aligned_cols=138  Identities=14%  Similarity=0.064  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829          515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE  594 (728)
Q Consensus       515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  594 (728)
                      ...+..+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.++++++.+      
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------   76 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            3467789999999999999999999999999986554       678889999999999999999999999987      


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH--HHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          595 KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY--SNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       595 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                        .+....++..+|.++...|++++|+.+|++++.+        .|....++  ..++..+...|++++|+.++.++..+
T Consensus        77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence              2334578999999999999999999999999998        55555555  45555588899999999999999887


Q ss_pred             HHH
Q 004829          673 REE  675 (728)
Q Consensus       673 ~~~  675 (728)
                      ...
T Consensus       147 ~~~  149 (166)
T 1a17_A          147 VDS  149 (166)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.30  E-value=2.1e-11  Score=122.29  Aligned_cols=195  Identities=13%  Similarity=0.072  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCC
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG  511 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  511 (728)
                      .+..+..+|..+...|++++|+.+|++++..        .|....++.++|.+|..+|++++|+..+++++++       
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------   67 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------   67 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            3567889999999999999999999999998        7778899999999999999999999999999987       


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT  591 (728)
Q Consensus       512 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  591 (728)
                        .+....+++.+|.+|..+|++++|+.+|++++++.+...............    .      .++.....    ....
T Consensus        68 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~------~~~~~~~~----~~~~  131 (281)
T 2c2l_A           68 --DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR----I------AKKKRWNS----IEER  131 (281)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH----H------HHHHHHHH----HHHT
T ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----H------HHHHHHHH----HHHH
Confidence              344567899999999999999999999999999998763332222111111    1      11111111    1111


Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHH
Q 004829          592 SGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM-GRIDDAIEILEYVV  670 (728)
Q Consensus       592 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~~~~~~al  670 (728)
                      .... ..   .+...++.++  .|++++|++.|+++++.        +|........++.++... +.+++|..+|.++.
T Consensus       132 ~~~~-~~---~i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~  197 (281)
T 2c2l_A          132 RIHQ-ES---ELHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD  197 (281)
T ss_dssp             CCCC-CC---HHHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHhh-hH---HHHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1122 22   2334444443  68999999999999987        676666777777777665 67888999988876


Q ss_pred             H
Q 004829          671 G  671 (728)
Q Consensus       671 ~  671 (728)
                      +
T Consensus       198 ~  198 (281)
T 2c2l_A          198 E  198 (281)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.30  E-value=7.2e-11  Score=102.33  Aligned_cols=122  Identities=12%  Similarity=0.082  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829          558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP  637 (728)
Q Consensus       558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  637 (728)
                      .+..+..+|..++..|++++|+.+|++++.+        .+....++..+|.++...|++++|+..|++++.+       
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            3567889999999999999999999999988        3334689999999999999999999999999999       


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829          638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE  697 (728)
Q Consensus       638 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~  697 (728)
                       +|....+++.+|.++..+|++++|+.+|++++.+.....  ..|....++..++.+...
T Consensus        68 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           68 -DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence             888888999999999999999999999999999864442  236667777777776554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.29  E-value=9.3e-11  Score=106.88  Aligned_cols=141  Identities=13%  Similarity=0.097  Sum_probs=119.7

Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829          431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH  510 (728)
Q Consensus       431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  510 (728)
                      ..+..+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++.+.     
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----   77 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----   77 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence            34667899999999999999999999999998        77778899999999999999999999999999983     


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR  590 (728)
Q Consensus       511 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  590 (728)
                          +....++..+|.++...|++++|+.+|++++.+.+..     .....+..++..+...|++++|+.++.++..++.
T Consensus        78 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A           78 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence                3346789999999999999999999999999886543     1223334556668899999999999999988876


Q ss_pred             HhC
Q 004829          591 TSG  593 (728)
Q Consensus       591 ~~~  593 (728)
                      ...
T Consensus       149 ~~~  151 (166)
T 1a17_A          149 SLD  151 (166)
T ss_dssp             HCC
T ss_pred             ccc
Confidence            644

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.29  E-value=7.3e-10  Score=111.54  Aligned_cols=236  Identities=7%  Similarity=-0.023  Sum_probs=185.8

Q ss_pred             HcCCHH-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829          405 SKGDYE-AALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR----------FDEAIFSYHKALTAFKSAKGENHPA  473 (728)
Q Consensus       405 ~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~  473 (728)
                      ..|++. +|+..+.+++.+      .|....+|+..+.++...+.          +++++.++..++..        +|.
T Consensus        41 ~~~e~s~eaL~~t~~~L~~------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PK  106 (331)
T 3dss_A           41 QAGELDESVLELTSQILGA------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPK  106 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTT------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTT
T ss_pred             HcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CCC
Confidence            456654 789999888754      68888899999999988776          68888999998887        899


Q ss_pred             HHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhc
Q 004829          474 VASVFVRLADLYHKIGK--LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE-LEQAVKLLNKALKIYGK  550 (728)
Q Consensus       474 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~  550 (728)
                      ...++...+.++...++  +++++.++.++++.         ++....+|...+.+....|. +++++.++.++++..+.
T Consensus       107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~---------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~  177 (331)
T 3dss_A          107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA---------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  177 (331)
T ss_dssp             CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred             CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence            99999999999999994  89999999999998         44567889999999999998 69999999999988665


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc--
Q 004829          551 TPGQQSTIAGIEAQMGVMYYMT--------------GNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR--  614 (728)
Q Consensus       551 ~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--  614 (728)
                      .       ..++..++.++...              +.++++++++.+++.+        .|....+++.+..++...  
T Consensus       178 N-------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~~~~~  242 (331)
T 3dss_A          178 N-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGAGSG  242 (331)
T ss_dssp             C-------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHSSSC
T ss_pred             C-------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccC
Confidence            5       56778888888776              4588999999999987        344456676555555444  


Q ss_pred             ---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          615 ---------YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD---AMGRIDDAIEILEYVVGMREEKLGTANP  682 (728)
Q Consensus       615 ---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~p  682 (728)
                               +.++++++++.+++++        .|+...++..++.+..   ..|..++...++.+.+++        +|
T Consensus       243 ~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------Dp  306 (331)
T 3dss_A          243 RCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--------DP  306 (331)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--------CG
T ss_pred             ccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--------Cc
Confidence                     3588999999999998        7776666665555433   357788899999998885        46


Q ss_pred             HHHHHHHHHHHH
Q 004829          683 DVEDEKRRLAEL  694 (728)
Q Consensus       683 ~~~~~~~~La~~  694 (728)
                      ....-|..|..-
T Consensus       307 ~r~~~y~d~~~~  318 (331)
T 3dss_A          307 MRAAYLDDLRSK  318 (331)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             chhhHHHHHHHH
Confidence            666555555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.28  E-value=7.1e-12  Score=125.74  Aligned_cols=195  Identities=12%  Similarity=0.051  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE  345 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  345 (728)
                      +..+..+|..++..|+|++|+.+|++++.+.     +..+    .++..+|.+|..+|++++|+..|++++++       
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~-------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVA----VYYTNRALCYLKMQQPEQALADCRRALEL-------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            5568889999999999999999999999875     4443    35999999999999999999999999988       


Q ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 004829          346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA  425 (728)
Q Consensus       346 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  425 (728)
                       +|....+++.+|.+|...|++++|+..|++++.+.+.........   ++..+  .      ..++..+.....   ..
T Consensus        68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~---~~~~~--~------~~~~~~~~~~~~---~~  132 (281)
T 2c2l_A           68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD---IPSAL--R------IAKKKRWNSIEE---RR  132 (281)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH---HHHHH--H------HHHHHHHHHHHH---TC
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH---HHHHH--H------HHHHHHHHHHHH---HH
Confidence             788889999999999999999999999999999998764321110   11111  1      111111111111   11


Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 004829          426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKI-GKLRDSKSYCENALKI  504 (728)
Q Consensus       426 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  504 (728)
                      ....+.   +...++.++  .|++++|++.+++++++        .|........++.++... +.+++|...|.++.+.
T Consensus       133 ~~~~~~---i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          133 IHQESE---LHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             CCCCCH---HHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HhhhHH---HHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            222232   334444443  79999999999999887        666666677777777666 6788899999887653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.28  E-value=3.5e-11  Score=115.10  Aligned_cols=141  Identities=19%  Similarity=0.184  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829          393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP  472 (728)
Q Consensus       393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  472 (728)
                      +..++.+|.++...|++++|+..|.+++        .+ ...++.++|.+|...|++++|+.+|++++.+        .|
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--------~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~   68 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--------DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK   68 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--------SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--------CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Cc
Confidence            4457889999999999999999999874        11 3579999999999999999999999999998        77


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC-------CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN-------HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKAL  545 (728)
Q Consensus       473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  545 (728)
                      ....++..+|.+|...|++++|+.+|++++.+.....       .....+....++..+|.+|...|++++|+.+|++++
T Consensus        69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  148 (213)
T 1hh8_A           69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  148 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            7889999999999999999999999999999754311       000234567889999999999999999999999999


Q ss_pred             HHHhc
Q 004829          546 KIYGK  550 (728)
Q Consensus       546 ~~~~~  550 (728)
                      ++.+.
T Consensus       149 ~~~p~  153 (213)
T 1hh8_A          149 SMKSE  153 (213)
T ss_dssp             TTCCS
T ss_pred             HcCcc
Confidence            87554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.27  E-value=9.8e-11  Score=101.49  Aligned_cols=122  Identities=14%  Similarity=0.014  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829          517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK  596 (728)
Q Consensus       517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  596 (728)
                      .+..+..+|..++..|++++|+.+|++++.+.+..       ..++..+|.+|..+|++++|+..|++++.+        
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEK--------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            56788999999999999999999999999987655       578899999999999999999999999998        


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA  655 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~  655 (728)
                      .+....++..+|.++...|++++|+..|++++.+......  .|....++..++.+...
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCC--chhHHHHHHHHHHHHHh
Confidence            3344678999999999999999999999999999322211  26667777777776654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.27  E-value=1.2e-11  Score=110.65  Aligned_cols=107  Identities=11%  Similarity=-0.002  Sum_probs=96.7

Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      ..|....+++.+|.++...|++++|+..|++++.+        .|....++..+|.++...|++++|+.+|++++.+.  
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--   85 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--   85 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence            36778889999999999999999999999999998        88888999999999999999999999999999983  


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                             |....+++.+|.+|...|++++|+.+|++++++.+..
T Consensus        86 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           86 -------IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             -------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             -------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence                   3345678999999999999999999999999998765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.26  E-value=6e-12  Score=119.11  Aligned_cols=169  Identities=11%  Similarity=0.059  Sum_probs=118.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc-----
Q 004829          523 DIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS-----  597 (728)
Q Consensus       523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----  597 (728)
                      ..+......|++++|.+.+........       ..+..+..+|.+++..|++++|+.+|++++.+.........     
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   81 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEEKV-------QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD   81 (198)
T ss_dssp             -------------CCCSGGGCCHHHHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH
T ss_pred             chhhhhhhhhhccccCchhhCCHHHHH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence            344555566777776666654433222       23567889999999999999999999999986433211100     


Q ss_pred             ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829          598 ---ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE  674 (728)
Q Consensus       598 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~  674 (728)
                         .....++.++|.++...|++++|+.+|++++.+        +|....+++.+|.+|..+|++++|+.+|++++.+  
T Consensus        82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--  151 (198)
T 2fbn_A           82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--  151 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--
Confidence               011378999999999999999999999999998        7888889999999999999999999999999986  


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829          675 EKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD  714 (728)
Q Consensus       675 ~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~  714 (728)
                            +|....++..++.++..+++..++....+..++.
T Consensus       152 ------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          152 ------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             ------STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             ------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  3677788999999999999998887555555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.26  E-value=1.1e-10  Score=117.96  Aligned_cols=245  Identities=10%  Similarity=-0.008  Sum_probs=187.7

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHcCC
Q 004829          430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG-KLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  508 (728)
                      +....++..+..+....+..++|+..+.+++.+        +|....+++..+.++..+| .+++++.++..++...   
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n---  119 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN---  119 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---
Confidence            344555556666666677778999999999998        8889999999999999999 5999999999999873   


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHH--------HH
Q 004829          509 NHGIPSEEIASGLIDIAAIYQSM-N-ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYS--------DS  578 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A  578 (728)
                            |....+|...+.++... + ++++++.++.++++..++.       ..++...+.++...|.++        ++
T Consensus       120 ------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------y~AW~~R~wvl~~l~~~~~~~~~~~~eE  186 (349)
T 3q7a_A          120 ------LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------YHTWAYLHWLYSHFSTLGRISEAQWGSE  186 (349)
T ss_dssp             ------CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------HHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             ------CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccccccchhhHHHH
Confidence                  34567888899988887 7 8899999999988765554       567788888888888877        99


Q ss_pred             HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004829          579 YNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT-------INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAG  651 (728)
Q Consensus       579 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~  651 (728)
                      ++++.++++.        ++....++...+.++...+.       ++++++++.+++.+        +|....+++.+..
T Consensus       187 Le~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~  250 (349)
T 3q7a_A          187 LDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRG  250 (349)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            9999999987        44456799999999998886       79999999999999        8999999999999


Q ss_pred             HHHHcCChHH------------HHH-HHHHHHHHHHHHcCCC-----ChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004829          652 TYDAMGRIDD------------AIE-ILEYVVGMREEKLGTA-----NPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFL  713 (728)
Q Consensus       652 ~~~~~g~~~~------------A~~-~~~~al~~~~~~~~~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll  713 (728)
                      ++...|+...            .+. .+....+.+..+.+..     .+....++.-|+.+|...|+.++|. +.++.+.
T Consensus       251 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~-~~~~~l~  329 (349)
T 3q7a_A          251 FLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA-KVFEKLS  329 (349)
T ss_dssp             HHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Confidence            9998887510            000 0112222222222221     2456678899999999999999999 8888886


Q ss_pred             hh
Q 004829          714 DS  715 (728)
Q Consensus       714 ~~  715 (728)
                      +.
T Consensus       330 ~~  331 (349)
T 3q7a_A          330 SE  331 (349)
T ss_dssp             HT
T ss_pred             hh
Confidence            43

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.25  E-value=4.8e-11  Score=114.10  Aligned_cols=140  Identities=11%  Similarity=-0.001  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYH  639 (728)
Q Consensus       560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  639 (728)
                      ..++.+|.++...|++++|+.+|++++.       .    ...++..+|.++...|++++|+.+|++++.+        +
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~   67 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D   67 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            3467899999999999999999998841       1    2468999999999999999999999999998        7


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004829          640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKL--------GTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVT  711 (728)
Q Consensus       640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  711 (728)
                      |....+++.+|.+|..+|++++|+.+|++++.+.....        ....|....++..+|.+|..+|++++|+ ..++.
T Consensus        68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~  146 (213)
T 1hh8_A           68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLAL  146 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHHH
T ss_pred             ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HHHHH
Confidence            78888999999999999999999999999998542100        0033566799999999999999999999 99999


Q ss_pred             HHhhcccc
Q 004829          712 FLDSNSQN  719 (728)
Q Consensus       712 ll~~~~~~  719 (728)
                      ++...|..
T Consensus       147 al~~~p~~  154 (213)
T 1hh8_A          147 ATSMKSEP  154 (213)
T ss_dssp             HHTTCCSG
T ss_pred             HHHcCccc
Confidence            99988854

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.25  E-value=4.7e-11  Score=108.78  Aligned_cols=133  Identities=13%  Similarity=0.087  Sum_probs=111.0

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---CC-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE---KK-------SALFGIALNQMGLACVQRYTINEAADLFEE  626 (728)
Q Consensus       557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  626 (728)
                      ..+..+..+|..++..|+|++|+.+|.+++.++.....   ..       .+....++.++|.+|..+|++++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            45677889999999999999999999999998665421   11       234567899999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHH-HHHHHHHHHHHHhCChhHHH
Q 004829          627 ARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVE-DEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       627 al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~-~~~~~La~~~~~~g~~~~A~  705 (728)
                      ++.+        +|....+++.+|.+|..+|++++|+..|++++.+.        |... .+...|+.+....++..++.
T Consensus        89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~~l~~~~~~~~~~~~~~  152 (162)
T 3rkv_A           89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--------PAAASVVAREMKIVTERRAEKKADS  152 (162)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999        88889999999999999999999999999999963        6665 56667777777666555544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.25  E-value=6.6e-12  Score=135.27  Aligned_cols=162  Identities=14%  Similarity=0.165  Sum_probs=127.8

Q ss_pred             HcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-------CcHHHHH
Q 004829          530 SMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK-------KSALFGI  602 (728)
Q Consensus       530 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~  602 (728)
                      .++++++|+..|+.++...+..       +..+..+|.+++..|+|++|+.+|++++.+.......       ..+....
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~-------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  318 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQ-------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA  318 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHH-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence            3455566666666655554433       6678899999999999999999999999985432110       0122367


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP  682 (728)
Q Consensus       603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p  682 (728)
                      ++.++|.+|..+|++++|+.+|++++.+        +|....+++++|.+|..+|++++|+.+|++++++        +|
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P  382 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NP  382 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Confidence            8999999999999999999999999999        8888899999999999999999999999999984        58


Q ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829          683 DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD  714 (728)
Q Consensus       683 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~  714 (728)
                      ....++..++.++..+|++++|....+..++.
T Consensus       383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          383 QNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88899999999999999999988555555543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.23  E-value=9e-11  Score=102.42  Aligned_cols=122  Identities=11%  Similarity=0.169  Sum_probs=108.8

Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKE  634 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  634 (728)
                      .+.....+..+|.++...|++++|+.+|++++..        .+....++..+|.++...|++++|+.+|++++.+    
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----   79 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL----   79 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence            4566788899999999999999999999999876        2223678999999999999999999999999998    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829          635 YGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR  700 (728)
Q Consensus       635 ~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  700 (728)
                          .|....+++.+|.++...|++++|+.+|++++.+        +|....++..++.++..+|+
T Consensus        80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence                7777889999999999999999999999999985        47778899999999998875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.23  E-value=1.1e-10  Score=103.69  Aligned_cols=104  Identities=10%  Similarity=0.021  Sum_probs=93.8

Q ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          554 QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       554 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                      ..+.....++.+|.++...|++++|+.+|++++..        .+....++..+|.++...|++++|+.+|++++.+   
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---   81 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---   81 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence            34445677889999999999999999999999987        3445678999999999999999999999999999   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                           +|....+++.+|.+|..+|++++|+.+|++++.+.
T Consensus        82 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           82 -----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             -----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                 77778899999999999999999999999999976

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.22  E-value=1.2e-10  Score=106.29  Aligned_cols=104  Identities=17%  Similarity=0.059  Sum_probs=95.3

Q ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          554 QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       554 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                      .....+..+..+|.+++..|++++|+.+|++++.+        .+....++..+|.+|...|++++|+.+|++++.+   
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---   74 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---   74 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence            34566788999999999999999999999999998        3334689999999999999999999999999999   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                           +|....+++.+|.+|..+|++++|+.+|++++.+.
T Consensus        75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                 88888899999999999999999999999999976

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.22  E-value=2.9e-10  Score=100.27  Aligned_cols=114  Identities=17%  Similarity=0.070  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-----TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRT  591 (728)
Q Consensus       517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  591 (728)
                      .+..+..+|..++..|+|++|+..|++++++.+..+....     ..+.+|.++|.++..+|+|++|+.+|+++++++..
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4667889999999999999999999999999988533211     23458999999999999999999999999999777


Q ss_pred             hCCCCcHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          592 SGEKKSALFGIAL----NQMGLACVQRYTINEAADLFEEARTIL  631 (728)
Q Consensus       592 ~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~  631 (728)
                      .+..++ ..+.+|    +++|.++..+|++++|+..|++++++.
T Consensus        90 ~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~  132 (159)
T 2hr2_A           90 RGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  132 (159)
T ss_dssp             HCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            766544 457788    999999999999999999999999993

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.22  E-value=2.3e-11  Score=131.09  Aligned_cols=159  Identities=13%  Similarity=0.082  Sum_probs=130.5

Q ss_pred             HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC--------CcH
Q 004829          487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ--------STI  558 (728)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~  558 (728)
                      .++++++|+..++.++..         .+..+..+..+|.+++..|+|++|+.+|++++.+.+......        ...
T Consensus       246 ~l~~~~~A~~~~~~~~~~---------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~  316 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKE---------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL  316 (457)
T ss_dssp             EEEEEECCCCGGGSCHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHH---------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence            456677788777777766         566888999999999999999999999999999987653211        123


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                      ..++.++|.+|..+|++++|+.+|++++.+        .+....+++++|.+|..+|++++|+.+|++++++        
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------  380 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------  380 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            578899999999999999999999999998        3445689999999999999999999999999998        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHH-HHHHH
Q 004829          639 HHDTLGVYSNLAGTYDAMGRIDDAIEI-LEYVV  670 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~~~~A~~~-~~~al  670 (728)
                      +|....++..++.++..++++++|... |.+++
T Consensus       381 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          381 NPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999888753 44333

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.21  E-value=2.7e-10  Score=98.82  Aligned_cols=124  Identities=21%  Similarity=0.188  Sum_probs=109.9

Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS  592 (728)
Q Consensus       513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  592 (728)
                      ..+.....+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.++++++..    
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----   75 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICI----   75 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc----
Confidence            356678899999999999999999999999999886543       567889999999999999999999999987    


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh
Q 004829          593 GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI  659 (728)
Q Consensus       593 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~  659 (728)
                          .+....++..+|.++...|++++|+.+|++++.+        .|....++..++.++..+|++
T Consensus        76 ----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 ----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred             ----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence                2223578999999999999999999999999998        777777899999999999876

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.21  E-value=1.2e-10  Score=101.54  Aligned_cols=123  Identities=13%  Similarity=0.063  Sum_probs=108.7

Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS  592 (728)
Q Consensus       513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  592 (728)
                      ..+.....+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.++++++..    
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----   79 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQL----   79 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence            455678899999999999999999999999999765433       578899999999999999999999999987    


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC
Q 004829          593 GEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGR  658 (728)
Q Consensus       593 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~  658 (728)
                          .+....++..+|.++...|++++|+.+|++++.+        .|....++..++.++..+|+
T Consensus        80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence                2334578999999999999999999999999998        88888899999999988774

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.20  E-value=9.4e-10  Score=111.16  Aligned_cols=254  Identities=11%  Similarity=-0.023  Sum_probs=190.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA-RFDEAIFSYHKALTAFKSAKGENH  471 (728)
Q Consensus       393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~  471 (728)
                      ..++..+..+....+..++|+..+.+++.+      .|....+|+..+.++..+| .+++++.++.+++..        +
T Consensus        54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------n  119 (349)
T 3q7a_A           54 KDAMDYFRAIAAKEEKSERALELTEIIVRM------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------N  119 (349)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------T
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------C
Confidence            344555555666667778999999999877      6888899999999999999 599999999999987        8


Q ss_pred             HHHHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHH--------HHHHHH
Q 004829          472 PAVASVFVRLADLYHKI-G-KLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELE--------QAVKLL  541 (728)
Q Consensus       472 ~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~  541 (728)
                      |....++...+.++... + ++++++.++.+++..         ++....+|...+.++...|.++        ++++++
T Consensus       120 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~---------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~  190 (349)
T 3q7a_A          120 LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP---------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC  190 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS---------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence            99999999999999998 8 999999999999876         3445678899999998888887        999999


Q ss_pred             HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc
Q 004829          542 NKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN-------YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR  614 (728)
Q Consensus       542 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  614 (728)
                      .++++..+..       ..++...+.++...++       ++++++++.+++.+        .+....+++.+..++...
T Consensus       191 ~k~I~~dp~N-------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~Ll~~~  255 (349)
T 3q7a_A          191 NEMLRVDGRN-------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGFLKHF  255 (349)
T ss_dssp             HHHHHHCTTC-------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCC-------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhc
Confidence            9999886665       5688899999998887       78999999999987        444557888887787777


Q ss_pred             CCHHH------------HHH-HHHHHHHHHHHhcCC-----CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829          615 YTINE------------AAD-LFEEARTILEKEYGP-----YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK  676 (728)
Q Consensus       615 g~~~~------------A~~-~~~~al~~~~~~~~~-----~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~  676 (728)
                      |+...            .+. .+......+......     ..+....++..|+.+|...|+.++|.++++...+     
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-----  330 (349)
T 3q7a_A          256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS-----  330 (349)
T ss_dssp             TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred             CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----
Confidence            65300            000 011111111111111     1134555889999999999999999999988764     


Q ss_pred             cCCCChHHHHHHHHH
Q 004829          677 LGTANPDVEDEKRRL  691 (728)
Q Consensus       677 ~~~~~p~~~~~~~~L  691 (728)
                        ..+|-....+...
T Consensus       331 --~~dpir~~yw~~~  343 (349)
T 3q7a_A          331 --EYDQMRAGYWEFR  343 (349)
T ss_dssp             --TTCGGGHHHHHHH
T ss_pred             --hhChHHHHHHHHH
Confidence              2456554444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.20  E-value=2.3e-10  Score=99.30  Aligned_cols=122  Identities=14%  Similarity=0.068  Sum_probs=107.7

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829          557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG  636 (728)
Q Consensus       557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  636 (728)
                      .....+..+|.++...|++++|+.+|++++..        .+....++..+|.++...|++++|+.+|++++..      
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------   75 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI------   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc------
Confidence            44667889999999999999999999999987        2223578999999999999999999999999998      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChh
Q 004829          637 PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVR  702 (728)
Q Consensus       637 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~  702 (728)
                        .|....++..+|.++...|++++|+.+|++++.+        .|....++..++.++...|+++
T Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           76 --DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTCC
T ss_pred             --CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcCC
Confidence              6777789999999999999999999999999985        3666778999999999998863

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.20  E-value=5.3e-10  Score=98.64  Aligned_cols=128  Identities=13%  Similarity=0.129  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKG----ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      .+..+.++|..++..|+|++|+..|++++++......    ...|....+|.++|.++..+|+|++|+..|+++++++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            3567889999999999999999999999999443100    002234569999999999999999999999999998432


Q ss_pred             CCCCCCcHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHH
Q 004829          508 PNHGIPSEEIASGL----IDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGI  561 (728)
Q Consensus       508 ~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  561 (728)
                      ..  .-.|+...+|    +++|.++..+|++++|+..|++++++.+...+....+..+
T Consensus        90 ~~--e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           90 RG--ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             HC--CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             cc--cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            21  1234567778    9999999999999999999999999999887766655444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.19  E-value=2.6e-10  Score=101.20  Aligned_cols=107  Identities=11%  Similarity=0.029  Sum_probs=96.2

Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      ..|.....++.+|.++...|++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|++++.+.  
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--   82 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--   82 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence            46777888999999999999999999999999998        88888999999999999999999999999999983  


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                             |....++..+|.+|...|++++|+.+|++++.+.+..
T Consensus        83 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           83 -------INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             -------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             -------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence                   3345678999999999999999999999999998865

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.19  E-value=3.4e-10  Score=103.26  Aligned_cols=107  Identities=18%  Similarity=0.162  Sum_probs=91.7

Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      ..+..+..+..+|.+++..|++++|+.+|++++.+        .|....++.++|.+|...|++++|+.+|++++.+.  
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--   75 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--   75 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Confidence            45566788889999999999999999999999988        77778889999999999999999999999999883  


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                             +....++..+|.+|..+|++++|+.+|++++++.+..
T Consensus        76 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           76 -------PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred             -------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence                   3346788899999999999999999999999888765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.18  E-value=2e-10  Score=104.49  Aligned_cols=106  Identities=16%  Similarity=0.131  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC------------ChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829          391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH------------ELDVASIDCSIGDAYLSLARFDEAIFSYHK  458 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  458 (728)
                      ..+..+..+|..++..|++++|+..|.+++.+......            .+....++.++|.+|..+|++++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34667899999999999999999999999987543211            456678999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          459 ALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       459 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      ++.+        .|....+++.+|.+|..+|++++|+..|++++.+
T Consensus        89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            9999        8888999999999999999999999999999999

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.16  E-value=9.2e-11  Score=108.56  Aligned_cols=122  Identities=15%  Similarity=0.182  Sum_probs=104.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 004829          528 YQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQM  607 (728)
Q Consensus       528 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  607 (728)
                      +...|++++|+..+++++...+..       ..++..+|.+|...|++++|+.+|++++.+.        +....++..+
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l   84 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAAL   84 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHH
Confidence            346789999999999999886544       5688899999999999999999999999873        2235688999


Q ss_pred             HHH-HHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          608 GLA-CVQRYTI--NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       608 a~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      |.+ +...|++  ++|+.+|++++.+        +|....+++.+|.+|...|++++|+.+|++++.+
T Consensus        85 a~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           85 ATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            999 8899999  9999999999998        7777889999999999999999999999999984

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.15  E-value=4.4e-10  Score=98.81  Aligned_cols=102  Identities=16%  Similarity=0.154  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829          558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP  637 (728)
Q Consensus       558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  637 (728)
                      .+..+..+|.++...|++++|+.+|++++.+        .+....++..+|.++...|++++|+.+|++++.+       
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            3677889999999999999999999999988        3334678999999999999999999999999998       


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829          638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE  675 (728)
Q Consensus       638 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~  675 (728)
                       +|....+++.+|.+|..+|++++|+.+|++++.+...
T Consensus        73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence             7888889999999999999999999999999998744

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.14  E-value=1e-11  Score=134.31  Aligned_cols=168  Identities=14%  Similarity=0.098  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829          515 EEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE  594 (728)
Q Consensus       515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  594 (728)
                      +..+..+..+|.++...|++++|+.+|++++++.+..       ..++.++|.+|..+|++++|+.+|++++++      
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------   69 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL------   69 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            4456677788999999999999999999999986554       678899999999999999999999999987      


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHcCChHHHHHHHH-----
Q 004829          595 KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGT--YDAMGRIDDAIEILE-----  667 (728)
Q Consensus       595 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~--~~~~g~~~~A~~~~~-----  667 (728)
                        .+....+++++|.+|..+|++++|+.+|++++++        +|....++..++.+  +..+|++++|+..++     
T Consensus        70 --~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~  139 (477)
T 1wao_1           70 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  139 (477)
T ss_dssp             --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence              3344678999999999999999999999999998        66666688888888  888999999999999     


Q ss_pred             ------HHHHHHHHHcCCCChH---HHHHHHHHHHHHHHhCChhHHH
Q 004829          668 ------YVVGMREEKLGTANPD---VEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       668 ------~al~~~~~~~~~~~p~---~~~~~~~La~~~~~~g~~~~A~  705 (728)
                            +++.+.....++.++.   ....+..+...+...+.+.++.
T Consensus       140 ~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~  186 (477)
T 1wao_1          140 VDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKC  186 (477)
T ss_dssp             TTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHH
T ss_pred             HhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHH
Confidence                  7766655555666664   3444555566666666655443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.13  E-value=9.3e-10  Score=94.42  Aligned_cols=118  Identities=21%  Similarity=0.362  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829          558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP  637 (728)
Q Consensus       558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  637 (728)
                      ...++..+|.++...|++++|+.+|++++..        .+....++..+|.++...|++++|+.+|++++..       
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   72 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------   72 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence            3567889999999999999999999999986        2223568899999999999999999999999988       


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829          638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG  699 (728)
Q Consensus       638 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  699 (728)
                       .|....++..+|.+|...|++++|+.+|++++.+        +|....++..++.++...|
T Consensus        73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence             6666778999999999999999999999999985        3666778889999888765

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.13  E-value=1e-10  Score=108.27  Aligned_cols=128  Identities=11%  Similarity=0.108  Sum_probs=108.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004829          569 YYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSN  648 (728)
Q Consensus       569 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  648 (728)
                      +...|++++|+..+++++..        .+....++..+|.+|...|++++|+.+|++++.+        .|....++..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHH
Confidence            45678999999999999987        2334578999999999999999999999999998        6666778999


Q ss_pred             HHHH-HHHcCCh--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          649 LAGT-YDAMGRI--DDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       649 La~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                      +|.+ +...|++  ++|+.+|++++.+        +|....++..+|.+|...|++++|+ ..++.++...|....
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~  150 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTCCTTSC
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhCCCCcc
Confidence            9999 8899999  9999999999985        3667788999999999999999999 999999999887643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.11  E-value=1.6e-09  Score=92.99  Aligned_cols=118  Identities=19%  Similarity=0.302  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829          517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK  596 (728)
Q Consensus       517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  596 (728)
                      ...++..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.++++++..        
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------   72 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------   72 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence            46788999999999999999999999999875433       467889999999999999999999999986        


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG  657 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g  657 (728)
                      .+....++..+|.++...|++++|+.+|++++.+        +|....++..++.++...|
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence            2223468889999999999999999999999998        7777788899999887654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.10  E-value=3.2e-10  Score=97.41  Aligned_cols=101  Identities=20%  Similarity=0.085  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          603 ALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANP  682 (728)
Q Consensus       603 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p  682 (728)
                      .++.+|.++...|++++|+..|++++.+        +|....+++.+|.++...|++++|+..|++++++        +|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P   82 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   82 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence            4678899999999999999999999999        8888999999999999999999999999999995        37


Q ss_pred             HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829          683 DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       683 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      +...++..||.+|...|++++|+ ..++.++..+|...
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~P~~~  119 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAAL-ASLRAWLLSQPQYE  119 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcCCC
Confidence            77789999999999999999999 99999999888653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.10  E-value=3e-10  Score=118.32  Aligned_cols=130  Identities=12%  Similarity=0.141  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG--------EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILE  632 (728)
Q Consensus       561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  632 (728)
                      .+..+|..++..|++++|+.+|++++++.....        ....+....++.++|.+|..+|++++|+.+|++++++  
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--  302 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  302 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence            456789999999999999999999999655421        0013456789999999999999999999999999998  


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHH
Q 004829          633 KEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKS  706 (728)
Q Consensus       633 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~  706 (728)
                            +|....+++.+|.+|..+|++++|+.+|++++++.        |....++..|+.++..+++.+++..
T Consensus       303 ------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          303 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                  78888899999999999999999999999999963        6677889999999999999998873

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.08  E-value=5.3e-11  Score=128.67  Aligned_cols=177  Identities=15%  Similarity=0.103  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829          393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP  472 (728)
Q Consensus       393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  472 (728)
                      +..+..+|.++...|++++|+.+|++++.+      .|....++.++|.+|..+|++++|+.+|++++++        +|
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p   71 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DK   71 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CC
Confidence            445677888999999999999999999987      5666889999999999999999999999999998        78


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH--HHHcCCHHHHHHHHH--------
Q 004829          473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAI--YQSMNELEQAVKLLN--------  542 (728)
Q Consensus       473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~--------  542 (728)
                      ....++.++|.+|..+|++++|+.+|++++++...         ...++..++.+  +..+|++++|+..++        
T Consensus        72 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---------~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~  142 (477)
T 1wao_1           72 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---------DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS  142 (477)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---------CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTC
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhh
Confidence            88899999999999999999999999999998422         23456667777  888999999999999        


Q ss_pred             ---HHHHHHhcCCCCCCc----HHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHh
Q 004829          543 ---KALKIYGKTPGQQST----IAGIEAQMGVMYYMTGNYS--DSYNTLKSAISKFRTS  592 (728)
Q Consensus       543 ---~al~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~  592 (728)
                         +++.+.+...+....    ....+..+...+...+.+.  .+..++.++.+++...
T Consensus       143 ~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e  201 (477)
T 1wao_1          143 LDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL  201 (477)
T ss_dssp             CTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred             hhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence               666655544333221    1223334444555555443  4455777777776653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.08  E-value=1.6e-09  Score=107.27  Aligned_cols=264  Identities=11%  Similarity=0.019  Sum_probs=168.7

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 004829          360 AHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSI  439 (728)
Q Consensus       360 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  439 (728)
                      -.+..|+|..++.-..+   +.+    ....   .....+.+.|..+|++....             ...+. ..+...+
T Consensus        22 n~fy~G~yq~~i~e~~~---~~~----~~~~---~~~~~~~Rs~iAlg~~~~~~-------------~~~~~-~~a~~~l   77 (310)
T 3mv2_B           22 QNYYTGNFVQCLQEIEK---FSK----VTDN---TLLFYKAKTLLALGQYQSQD-------------PTSKL-GKVLDLY   77 (310)
T ss_dssp             HHHTTTCHHHHTHHHHT---SSC----CCCH---HHHHHHHHHHHHTTCCCCCC-------------SSSTT-HHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHh---cCc----cchH---HHHHHHHHHHHHcCCCccCC-------------CCCHH-HHHHHHH
Confidence            35678999888763321   111    1111   24556677888888876321             12222 2233344


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHH
Q 004829          440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIAS  519 (728)
Q Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  519 (728)
                      +..+.  ++   |+..+++.+..       ..+. ..++..+|.++...|++++|+.++.+++....       ......
T Consensus        78 a~~~~--~~---a~~~l~~l~~~-------~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-------~~~~le  137 (310)
T 3mv2_B           78 VQFLD--TK---NIEELENLLKD-------KQNS-PYELYLLATAQAILGDLDKSLETCVEGIDNDE-------AEGTTE  137 (310)
T ss_dssp             HHHHT--TT---CCHHHHHTTTT-------SCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-------STTHHH
T ss_pred             HHHhc--cc---HHHHHHHHHhc-------CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-------CcCcHH
Confidence            43332  22   66666665542       1122 34457899999999999999999999865421       134678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHHHHhCCC
Q 004829          520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM--GVMYYMTG--NYSDSYNTLKSAISKFRTSGEK  595 (728)
Q Consensus       520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~~  595 (728)
                      ++..++.++..+|+.+.|.+.++++.+..++..   ...-.+...+  +++.+..|  ++.+|..+|+++...+    + 
T Consensus       138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~---~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~----p-  209 (310)
T 3mv2_B          138 LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV---SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF----P-  209 (310)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS----C-
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc---ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC----C-
Confidence            889999999999999999999999877644100   0001223344  44466667  9999999999976431    1 


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          596 KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY--HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       596 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                       .......+.+   ++..+|++++|...++.+++..-.....+  .|..+.++.+++.+...+|+  +|.++++++.+..
T Consensus       210 -~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          210 -TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             -SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             -CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence             1112233333   89999999999999997776632110000  25567788899999999998  8889999888743


Q ss_pred             HHHcCCCChHHHH
Q 004829          674 EEKLGTANPDVED  686 (728)
Q Consensus       674 ~~~~~~~~p~~~~  686 (728)
                           |+||...+
T Consensus       284 -----P~hp~i~d  291 (310)
T 3mv2_B          284 -----HEHAFIKH  291 (310)
T ss_dssp             -----CCCHHHHH
T ss_pred             -----CCChHHHH
Confidence                 67776554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.08  E-value=2.2e-09  Score=93.09  Aligned_cols=118  Identities=16%  Similarity=0.154  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829          561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH  640 (728)
Q Consensus       561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  640 (728)
                      .++.+|.++...|++++|+..|++++...     +..+....+++.+|.++...|++++|+.+|++++..     .++++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~   73 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD   73 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence            45688999999999999999999998862     223334578999999999999999999999999998     23333


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 004829          641 DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAE  693 (728)
Q Consensus       641 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~  693 (728)
                      ....+++.+|.+|..+|++++|+.+|++++...     |+++....+...+..
T Consensus        74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQS  121 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHH
Confidence            337899999999999999999999999999854     455555544444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.08  E-value=2.1e-09  Score=91.19  Aligned_cols=113  Identities=15%  Similarity=0.087  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                      +..+..+|.++...|++++|+.+|++++..        .+....++..+|.++...|++++|+.++++++.+        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            456788999999999999999999999987        2223578999999999999999999999999998        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829          639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL  695 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  695 (728)
                      .|....++..+|.++...|++++|+.+|++++.+        +|....++..++.+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence            7777789999999999999999999999999973        466666777777664

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.07  E-value=1.4e-09  Score=95.41  Aligned_cols=105  Identities=19%  Similarity=0.235  Sum_probs=95.0

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829          430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN  509 (728)
Q Consensus       430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  509 (728)
                      +..+..+..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.++++++.+.    
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----   73 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD----   73 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----
Confidence            455778999999999999999999999999998        77778899999999999999999999999999983    


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                           +....++..+|.++...|++++|+.+|++++.+.+..
T Consensus        74 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  110 (137)
T 3q49_B           74 -----GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  110 (137)
T ss_dssp             -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             -----chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence                 3356789999999999999999999999999998874

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.07  E-value=5.5e-10  Score=95.91  Aligned_cols=97  Identities=14%  Similarity=0.085  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829          561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHH  640 (728)
Q Consensus       561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  640 (728)
                      .++.+|..+...|++++|+..|+++++.        .+....+++.+|.++...|++++|+..|++++++        +|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P   82 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   82 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence            3568899999999999999999999998        4445789999999999999999999999999999        88


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          641 DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       641 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      ....+++.||.+|...|++++|+.+|++++++.
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            888899999999999999999999999999853

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.05  E-value=1.3e-09  Score=113.39  Aligned_cols=130  Identities=16%  Similarity=0.161  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc----------CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829          394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAAN----------GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAF  463 (728)
Q Consensus       394 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  463 (728)
                      ..+..+|..++..|++++|+..|++++.+....          ...+....++.++|.+|..+|++++|+.+|++++++ 
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-  302 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-  302 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence            347789999999999999999999999865432          145677889999999999999999999999999997 


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829          464 KSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKL  540 (728)
Q Consensus       464 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  540 (728)
                             .|....+++.+|.+|..+|++++|+.+|++++++.         |....++..++.++...++++++...
T Consensus       303 -------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---------P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          303 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---------PEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   78889999999999999999999999999999993         33456788899999988888777643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.05  E-value=4.5e-09  Score=90.97  Aligned_cols=124  Identities=14%  Similarity=0.169  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829          517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK  596 (728)
Q Consensus       517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  596 (728)
                      .+..+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.++++++......... 
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-   74 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED-   74 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC-
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh-
Confidence            46788999999999999999999999999986543       5678899999999999999999999999986653322 


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG  657 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g  657 (728)
                      ......++..+|.++...|++++|+.+|++++.+        .|+ ......++.++...+
T Consensus        75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HRT-PDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHHH
Confidence            3334778999999999999999999999999997        443 446666766665443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.04  E-value=1.9e-09  Score=93.43  Aligned_cols=124  Identities=13%  Similarity=0.116  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004829          558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGP  637 (728)
Q Consensus       558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  637 (728)
                      .+..+..+|.++...|++++|+.+|++++..        .+....++..+|.++...|++++|+.+|++++.+.... ..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~   73 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence            3567889999999999999999999999987        22235789999999999999999999999999984431 11


Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829          638 YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG  699 (728)
Q Consensus       638 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  699 (728)
                      ..+....+++.+|.+|...|++++|+.+|++++.+.        | .......++.++...+
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--------R-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------C-CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------C-CHHHHHHHHHHHHHHH
Confidence            222237799999999999999999999999999852        3 2445566666655443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.03  E-value=3.6e-10  Score=116.41  Aligned_cols=145  Identities=11%  Similarity=0.063  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--CC-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE--KK-------SALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      ..+..+|..++..|+|++|+.+|++++.+......  ..       ......+++++|.+|..+|++++|+.+|++++.+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  259 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE  259 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34567899999999999999999999987321100  00       0000138899999999999999999999999998


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-hCChhHHHHHHH
Q 004829          631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE-AGRVRNRKSRSL  709 (728)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~-~g~~~~A~~~~l  709 (728)
                              +|....+++++|.+|..+|++++|+.+|++++.+.        |....++..|+.+... .+..+++. ..+
T Consensus       260 --------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~~a~-~~~  322 (338)
T 2if4_A          260 --------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQKQK-EMY  322 (338)
T ss_dssp             --------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred             --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence                    88888899999999999999999999999999853        7778888889988554 45566666 888


Q ss_pred             HHHHhhcccccc
Q 004829          710 VTFLDSNSQNLK  721 (728)
Q Consensus       710 ~~ll~~~~~~~~  721 (728)
                      ..++...|....
T Consensus       323 ~~~l~~~p~~~~  334 (338)
T 2if4_A          323 KGIFKGKDEGGA  334 (338)
T ss_dssp             ------------
T ss_pred             HHhhCCCCCCCC
Confidence            888888887644

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.03  E-value=1e-08  Score=101.45  Aligned_cols=254  Identities=11%  Similarity=-0.005  Sum_probs=169.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004829          401 LICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVR  480 (728)
Q Consensus       401 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  480 (728)
                      .-.+..|+|..++.-..+.      ....+.  .....+.++|+.+|++....               ...|. ..+...
T Consensus        21 kn~fy~G~yq~~i~e~~~~------~~~~~~--~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~   76 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEKF------SKVTDN--TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL   76 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHTS------SCCCCH--HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHhc------CccchH--HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence            4566789999888743221      122222  35556677888888887421               12332 223333


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHH
Q 004829          481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAG  560 (728)
Q Consensus       481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  560 (728)
                      ++..+.  ++   |+..+++.+...      ...   ...+..+|.++...|++++|+..+.+++...+     ......
T Consensus        77 la~~~~--~~---a~~~l~~l~~~~------~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~le  137 (310)
T 3mv2_B           77 YVQFLD--TK---NIEELENLLKDK------QNS---PYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTE  137 (310)
T ss_dssp             HHHHHT--TT---CCHHHHHTTTTS------CCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHH
T ss_pred             HHHHhc--cc---HHHHHHHHHhcC------CCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHH
Confidence            444332  22   667777655331      112   23456899999999999999999999864321     124466


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH----HHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHHH
Q 004829          561 IEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA----LFGIALNQM--GLACVQRY--TINEAADLFEEARTILE  632 (728)
Q Consensus       561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~  632 (728)
                      ++..++.++..+|+.+.|.+.++++.+.        ++    ....++..+  |++.+..|  ++.+|..+|+++...  
T Consensus       138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--  207 (310)
T 3mv2_B          138 LLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--  207 (310)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--
Confidence            7788999999999999999999998766        22    012334444  44466666  999999999997665  


Q ss_pred             HhcCCCChh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHHHHhCChhHHHHHH
Q 004829          633 KEYGPYHHD--TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT--ANPDVEDEKRRLAELLKEAGRVRNRKSRS  708 (728)
Q Consensus       633 ~~~~~~~~~--~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~La~~~~~~g~~~~A~~~~  708 (728)
                            .|+  ....+++   ++..+|++++|...++.+++.....-..  ..|..++++.+++.+...+|+  +|. ++
T Consensus       208 ------~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~-~l  275 (310)
T 3mv2_B          208 ------FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE-DL  275 (310)
T ss_dssp             ------SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH-HH
T ss_pred             ------CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH-HH
Confidence                  554  2333344   8999999999999999777653211000  026678889899999999997  777 89


Q ss_pred             HHHHHhhcccc
Q 004829          709 LVTFLDSNSQN  719 (728)
Q Consensus       709 l~~ll~~~~~~  719 (728)
                      ++++...+|..
T Consensus       276 ~~qL~~~~P~h  286 (310)
T 3mv2_B          276 TNQLVKLDHEH  286 (310)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHHhCCCC
Confidence            99999888764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.02  E-value=4.1e-09  Score=89.33  Aligned_cols=114  Identities=14%  Similarity=0.165  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829          517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK  596 (728)
Q Consensus       517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  596 (728)
                      .+..+..+|.++...|++++|+.+|++++...+..       ..++..+|.++...|++++|+.++++++..        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            35678999999999999999999999999886544       567889999999999999999999999987        


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY  653 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~  653 (728)
                      .+....++..+|.++...|++++|+.+|++++.+        .|....++..++.+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence            2234578999999999999999999999999988        666667777777764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=3.3e-09  Score=94.34  Aligned_cols=119  Identities=12%  Similarity=0.142  Sum_probs=99.6

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 004829          557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG  636 (728)
Q Consensus       557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  636 (728)
                      .....+..+|..+...|++++|+.+|++++..     .........++..+|.++...|++++|+.+|++++.+      
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------   94 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------   94 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------
Confidence            44677889999999999999999999999875     2222234788999999999999999999999999998      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829          637 PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLK  696 (728)
Q Consensus       637 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~  696 (728)
                        +|....+++.+|.+|..+|++++|+.+|++++.+.        |....++..++.+..
T Consensus        95 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           95 --DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE--------PKNKVFQEALRNISG  144 (148)
T ss_dssp             --TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHC
T ss_pred             --CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHh
Confidence              67778899999999999999999999999999853        445555666665543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=7e-09  Score=92.13  Aligned_cols=122  Identities=15%  Similarity=0.160  Sum_probs=100.6

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhh
Q 004829          216 LGNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEI  295 (728)
Q Consensus       216 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  295 (728)
                      ..+|..+..++.+|..++..| ++++|+.+|++++..      ...++....++..+|.+|...|++++|+.+|++++.+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCG-DYGGALAAYTQALGL------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            345677899999999999997 999999999999874      2122234788999999999999999999999999987


Q ss_pred             hhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829          296 PVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAH  361 (728)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  361 (728)
                      .     +..+    .+++.+|.+|...|++++|+.+|++++.+        .|....++..++.+.
T Consensus        95 ~-----~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           95 D-----GGDV----KALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNIS  143 (148)
T ss_dssp             T-----SCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHH
T ss_pred             C-----ccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence            5     3333    35899999999999999999999999998        566666666666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.97  E-value=1.3e-08  Score=88.11  Aligned_cols=103  Identities=12%  Similarity=-0.002  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCC
Q 004829          223 PFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQ  302 (728)
Q Consensus       223 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  302 (728)
                      ..++.+|..++..| ++++|+..|++++..      ...++....+++.+|.++...|++++|+.+|++++...     +
T Consensus         3 ~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p   70 (129)
T 2xev_A            3 RTAYNVAFDALKNG-KYDDASQLFLSFLEL------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----P   70 (129)
T ss_dssp             CCHHHHHHHHHHTT-CHHHHHHHHHHHHHH------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T
T ss_pred             HHHHHHHHHHHHhC-CHHHHHHHHHHHHHH------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----C
Confidence            35788999999997 999999999999986      33345455788999999999999999999999999875     3


Q ss_pred             chhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829          303 DHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI  338 (728)
Q Consensus       303 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  338 (728)
                      .++. ...+++.+|.+|..+|++++|+.+|++++..
T Consensus        71 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           71 THDK-AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             TSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3311 2345899999999999999999999999988

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.96  E-value=4.2e-09  Score=115.81  Aligned_cols=177  Identities=8%  Similarity=0.018  Sum_probs=155.0

Q ss_pred             HhCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHcCCCCCCC
Q 004829          445 SLAR-FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK----------LRDSKSYCENALKIYGKPNHGIP  513 (728)
Q Consensus       445 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~  513 (728)
                      ..|+ .++|+..+.+++.+        +|....+|+..+.++...|+          +++++.++++++..         
T Consensus        40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---------  102 (567)
T 1dce_A           40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---------  102 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---------
Confidence            4444 46789999999999        99999999999999999998          99999999999998         


Q ss_pred             cHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 004829          514 SEEIASGLIDIAAIYQSMN--ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG-NYSDSYNTLKSAISKFR  590 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~  590 (728)
                      +|....+|...+.++...+  ++++|+.++.+++++.++.       ..+|...+.++...| .++++++++.++++.  
T Consensus       103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--  173 (567)
T 1dce_A          103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  173 (567)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred             CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence            4556789999999999999  7799999999999997766       678889999999999 899999999999876  


Q ss_pred             HhCCCCcHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829          591 TSGEKKSALFGIALNQMGLACVQR--------------YTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       591 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~  656 (728)
                            ++....+|+.++.++...              +.+++|++++.+|+.+        +|+...+|+.++.++...
T Consensus       174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~  239 (567)
T 1dce_A          174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA  239 (567)
T ss_dssp             ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred             ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence                  334457889999888875              5689999999999999        888888999999999998


Q ss_pred             CChHH
Q 004829          657 GRIDD  661 (728)
Q Consensus       657 g~~~~  661 (728)
                      +++++
T Consensus       240 ~~~~~  244 (567)
T 1dce_A          240 EPHDV  244 (567)
T ss_dssp             CCCSC
T ss_pred             CCccc
Confidence            88665

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.95  E-value=1.1e-09  Score=112.70  Aligned_cols=136  Identities=18%  Similarity=0.192  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHH-----------------HHHHHHHHHHHHhCCHHHHHHH
Q 004829          393 AADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVA-----------------SIDCSIGDAYLSLARFDEAIFS  455 (728)
Q Consensus       393 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~  455 (728)
                      +..+..+|..++..|++++|+..|.+++.+.      +...                 .++.++|.+|..+|++++|+.+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~------p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~  252 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM------GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH  252 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS------CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh------ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3457889999999999999999999998763      2222                 3889999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH-HHHcCCH
Q 004829          456 YHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAI-YQSMNEL  534 (728)
Q Consensus       456 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~  534 (728)
                      |++++.+        .|....+++++|.+|..+|++++|+.+|++++.+         .|....++..++.+ ....+..
T Consensus       253 ~~~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---------~p~~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          253 CNIVLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY---------APDDKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred             HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHHHHHH
Confidence            9999998        7888899999999999999999999999999887         34456677788877 4455677


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 004829          535 EQAVKLLNKALKIYGKT  551 (728)
Q Consensus       535 ~~A~~~~~~al~~~~~~  551 (728)
                      +++...|.+++...+..
T Consensus       316 ~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          316 QKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHhhCCCCCC
Confidence            88888999888776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.94  E-value=5.3e-09  Score=114.99  Aligned_cols=178  Identities=10%  Similarity=0.052  Sum_probs=155.3

Q ss_pred             HHcCCh-HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhcCCCC
Q 004829          486 HKIGKL-RDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE----------LEQAVKLLNKALKIYGKTPGQ  554 (728)
Q Consensus       486 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~  554 (728)
                      ...|++ ++|+..+.+++.+         .|....+|+..+.++...|+          +++|+.++.+++...++.   
T Consensus        39 ~~~~~~~eeal~~~~~~l~~---------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---  106 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGA---------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---  106 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---
T ss_pred             HHcCCCCHHHHHHHHHHHHH---------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC---
Confidence            344554 5789999999999         45567889999999999988          999999999999988776   


Q ss_pred             CCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Q 004829          555 QSTIAGIEAQMGVMYYMTG--NYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY-TINEAADLFEEARTIL  631 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  631 (728)
                          ..+|...+.++...+  ++++|+.++.+++++        ++....+|...+.++...| .++++++++.++++. 
T Consensus       107 ----y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-  173 (567)
T 1dce_A          107 ----YGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-  173 (567)
T ss_dssp             ----HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-
T ss_pred             ----HHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-
Confidence                678999999999999  779999999999998        4445678999999999999 999999999999998 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 004829          632 EKEYGPYHHDTLGVYSNLAGTYDAM--------------GRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKE  697 (728)
Q Consensus       632 ~~~~~~~~~~~~~~~~~La~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~  697 (728)
                             +|....+|..++.++..+              +.+++|++++.+|+.+        +|....+++.++.++..
T Consensus       174 -------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~  238 (567)
T 1dce_A          174 -------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGR  238 (567)
T ss_dssp             -------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSC
T ss_pred             -------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhc
Confidence                   888889999999999885              5579999999999985        47778899999999999


Q ss_pred             hCChhH
Q 004829          698 AGRVRN  703 (728)
Q Consensus       698 ~g~~~~  703 (728)
                      .+++++
T Consensus       239 ~~~~~~  244 (567)
T 1dce_A          239 AEPHDV  244 (567)
T ss_dssp             CCCCSC
T ss_pred             CCCccc
Confidence            998666

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.93  E-value=2.7e-09  Score=90.93  Aligned_cols=90  Identities=11%  Similarity=0.096  Sum_probs=76.8

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004829          571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA  650 (728)
Q Consensus       571 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La  650 (728)
                      .+|++++|+.+|++++++     ....+....++..+|.+|...|++++|+.+|++++++        +|+...+++.+|
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence            468999999999999975     1113567889999999999999999999999999999        888888999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHH
Q 004829          651 GTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       651 ~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      .++..+|++++|+.+|++++...
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999865

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.91  E-value=3.9e-09  Score=88.51  Aligned_cols=103  Identities=16%  Similarity=0.150  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA  680 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  680 (728)
                      ..++..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.+|++++.+        
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------   69 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------   69 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            356788999999999999999999999998        6667779999999999999999999999999984        


Q ss_pred             ChH--HHHHHHHHHHHHHHh-CChhHHHHHHHHHHHhhccccc
Q 004829          681 NPD--VEDEKRRLAELLKEA-GRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       681 ~p~--~~~~~~~La~~~~~~-g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      .|.  ...++..+|.++... |++++|+ .+++.++...|...
T Consensus        70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~~~p~~~  111 (112)
T 2kck_A           70 IEDEYNKDVWAAKADALRYIEGKEVEAE-IAEARAKLEHHHHH  111 (112)
T ss_dssp             SCCTTCHHHHHHHHHHHTTCSSCSHHHH-HHHHHHGGGCCCCC
T ss_pred             CcccchHHHHHHHHHHHHHHhCCHHHHH-HHHHHHhhcccCCC
Confidence            355  678899999999999 9999999 99999999888653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.82  E-value=1.1e-08  Score=87.15  Aligned_cols=93  Identities=20%  Similarity=0.301  Sum_probs=77.9

Q ss_pred             HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Q 004829          445 SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDI  524 (728)
Q Consensus       445 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l  524 (728)
                      .+|++++|+.+|++++++     +.+.|....++..+|.+|..+|++++|+.+|++++++.         |....++..+
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~l   67 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---------PNHQALRVFY   67 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCchHHHHHH
Confidence            468999999999999985     11148889999999999999999999999999999993         3346789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          525 AAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       525 a~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      |.++...|++++|+.+|++++...+..
T Consensus        68 ~~~~~~~g~~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           68 AMVLYNLGRYEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999999987654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.82  E-value=2.8e-09  Score=89.46  Aligned_cols=105  Identities=10%  Similarity=0.033  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829          431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH  510 (728)
Q Consensus       431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  510 (728)
                      ....++..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.++++++.+...   
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---   72 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED---   72 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC---
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---
Confidence            33456778889999999999999999999887        5666778889999999999999999999999887321   


Q ss_pred             CCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhc
Q 004829          511 GIPSEEIASGLIDIAAIYQSM-NELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       511 ~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~  550 (728)
                          .....++..+|.++... |++++|+.++++++...+.
T Consensus        73 ----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           73 ----EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             ----TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             ----cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence                01356788899999999 9999999999988766443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.77  E-value=5.3e-06  Score=89.60  Aligned_cols=383  Identities=10%  Similarity=0.016  Sum_probs=212.9

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChhHHHHHHHHhhhh
Q 004829          217 GNPALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLG-QYNEAIPVLERSVEI  295 (728)
Q Consensus       217 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  295 (728)
                      .+-..+...+..+...+-.| +++.+...|++++..       .|+.+   .|..........+ ..+.....|+.++..
T Consensus         9 ~~i~~aR~vyer~l~~~P~~-~~e~~~~iferal~~-------~ps~~---LW~~Y~~f~~~~~~~~~~i~~~fe~al~~   77 (493)
T 2uy1_A            9 VELSSPSAIMEHARRLYMSK-DYRSLESLFGRCLKK-------SYNLD---LWMLYIEYVRKVSQKKFKLYEVYEFTLGQ   77 (493)
T ss_dssp             ---CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHSTT-------CCCHH---HHHHHHHHHHHHC----CTHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHhcc-------CCCHH---HHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            34567778888888888876 899999999999873       23333   3433344334444 345567788888865


Q ss_pred             hhhhcCCchhHhHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHH
Q 004829          296 PVLEDGQDHALAKFAGCMQLGDTYA----MLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAE  371 (728)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  371 (728)
                      ..  ......    .+|......+.    ..++.+.+...|++++..      + .......|......- .......+.
T Consensus        78 vg--~d~~s~----~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~------P-~~~~~~lw~~Y~~fE-~~~~~~~~~  143 (493)
T 2uy1_A           78 FE--NYWDSY----GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT------P-MGSLSELWKDFENFE-LELNKITGK  143 (493)
T ss_dssp             ST--TCTTCH----HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS------C-CTTHHHHHHHHHHHH-HHHCHHHHH
T ss_pred             cC--CCcccH----HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC------h-hhhHHHHHHHHHHHH-HHhccccHH
Confidence            31  011111    23544444432    346788889999999874      1 112222222222111 111122222


Q ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC---
Q 004829          372 KICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR---  448 (728)
Q Consensus       372 ~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---  448 (728)
                      ..+....                            ..+..|...|..+.......  .   ...|.....  +..++   
T Consensus       144 ~~~~~~~----------------------------~~y~~ar~~y~~~~~~~~~~--s---~~~W~~y~~--~E~~~~~~  188 (493)
T 2uy1_A          144 KIVGDTL----------------------------PIFQSSFQRYQQIQPLIRGW--S---VKNAARLID--LEMENGMK  188 (493)
T ss_dssp             HHHHHHH----------------------------HHHHHHHHHHHHHHHHHHTC--S---HHHHHHHHH--HHHTCTTC
T ss_pred             HHHHHHh----------------------------HHHHHHHHHHHHHHHHHhhc--c---HHHHHHHHH--HHhcCCcc
Confidence            2211111                            12333444444443332210  1   122322222  22222   


Q ss_pred             ------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHH
Q 004829          449 ------FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI  522 (728)
Q Consensus       449 ------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  522 (728)
                            .......|++++..        .|.....+...+..+...|+.++|...|++|+.. ...     .    ..+.
T Consensus       189 ~~~~~~~~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~-----~----~l~~  250 (493)
T 2uy1_A          189 LGGRPHESRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG-----M----FLSL  250 (493)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-----S----HHHH
T ss_pred             CcchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-----H----HHHH
Confidence                  34567788888887        5666788999999999999999999999999998 331     1    1222


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcCC---C---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829          523 DIAAIYQSMNELEQAVKLLNKALKIYGKTP---G---QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK  596 (728)
Q Consensus       523 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  596 (728)
                      ..+.. ...+   +.   ++...+......   +   .......++...+....+.++.+.|...|.+| ..    .. .
T Consensus       251 ~y~~~-~e~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~~-~  317 (493)
T 2uy1_A          251 YYGLV-MDEE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----EG-V  317 (493)
T ss_dssp             HHHHH-TTCT---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----SC-C
T ss_pred             HHHhh-cchh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----CC-C
Confidence            22221 1111   11   222222110000   0   01122355667777777788899999999988 21    11 1


Q ss_pred             cHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004829          597 SALFGIALNQMGLACVQRY-TINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE  675 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~  675 (728)
                      .   ..++...|.+....+ +++.|...|+.+++.        .|+....+...+......|+.+.|..+|+++.     
T Consensus       318 ~---~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--------~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----  381 (493)
T 2uy1_A          318 G---PHVFIYCAFIEYYATGSRATPYNIFSSGLLK--------HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----  381 (493)
T ss_dssp             C---HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----
T ss_pred             C---hHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Confidence            1   235555566655555 699999999999987        23333345556777788999999999999872     


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829          676 KLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD  714 (728)
Q Consensus       676 ~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~  714 (728)
                          .   ....+......-...|+.+.+. ..++..+.
T Consensus       382 ----k---~~~lw~~~~~fE~~~G~~~~~r-~v~~~~~~  412 (493)
T 2uy1_A          382 ----K---TSRMWDSMIEYEFMVGSMELFR-ELVDQKMD  412 (493)
T ss_dssp             ----C---BHHHHHHHHHHHHHHSCHHHHH-HHHHHHHH
T ss_pred             ----H---HHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
Confidence                1   2344555566667778888877 55555543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.76  E-value=1.4e-08  Score=89.32  Aligned_cols=91  Identities=14%  Similarity=0.226  Sum_probs=81.6

Q ss_pred             HHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHcCCCCCCC
Q 004829          444 LSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKL----------RDSKSYCENALKIYGKPNHGIP  513 (728)
Q Consensus       444 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~  513 (728)
                      .+.+.|++|+..+++++++        .|..+.+++++|.++..++++          ++|+..|++++++         
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---------   75 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---------   75 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---------
Confidence            4567899999999999999        999999999999999999876          5999999999999         


Q ss_pred             cHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHhcC
Q 004829          514 SEEIASGLIDIAAIYQSMN-----------ELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~  551 (728)
                      .|....+|+++|.+|..+|           ++++|+.+|++|+++.++.
T Consensus        76 dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           76 DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            4557889999999999885           8999999999999997754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.75  E-value=8.5e-09  Score=90.69  Aligned_cols=88  Identities=16%  Similarity=0.123  Sum_probs=78.1

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCC
Q 004829          570 YMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTI----------NEAADLFEEARTILEKEYGPYH  639 (728)
Q Consensus       570 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~  639 (728)
                      .+.+.|++|+..+++++++        .+..+.+++++|.++...+++          ++|+..|++|+++        +
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d   76 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence            3557789999999999998        555678999999999998875          5999999999999        9


Q ss_pred             hhHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHH
Q 004829          640 HDTLGVYSNLAGTYDAMG-----------RIDDAIEILEYVVGMR  673 (728)
Q Consensus       640 ~~~~~~~~~La~~~~~~g-----------~~~~A~~~~~~al~~~  673 (728)
                      |+...+++++|.+|..+|           ++++|+.+|++|+++.
T Consensus        77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            999999999999999885           8999999999999964

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.70  E-value=3.9e-08  Score=82.42  Aligned_cols=89  Identities=17%  Similarity=0.105  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTA  680 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  680 (728)
                      +..+..+|.++...|++++|+..|++++.+        .|....++.++|.+|..+|++++|+.+|++++.+        
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--------   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            467889999999999999999999999998        7777889999999999999999999999999984        


Q ss_pred             ChHH------HHHHHHHHHHHHHhCChhHHH
Q 004829          681 NPDV------EDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       681 ~p~~------~~~~~~La~~~~~~g~~~~A~  705 (728)
                      +|..      ..++..++.++..+|+++.|+
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   98 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPV   98 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence            3444      788999999999999999988

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.69  E-value=9.3e-08  Score=76.70  Aligned_cols=85  Identities=21%  Similarity=0.351  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829          599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLG  678 (728)
Q Consensus       599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~  678 (728)
                      ....++..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.+|++++.+      
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------   72 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------   72 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence            35678999999999999999999999999998        7777789999999999999999999999999985      


Q ss_pred             CCChHHHHHHHHHHHHHHHhC
Q 004829          679 TANPDVEDEKRRLAELLKEAG  699 (728)
Q Consensus       679 ~~~p~~~~~~~~La~~~~~~g  699 (728)
                        +|....++..++.++..+|
T Consensus        73 --~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 --DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             --CTTCHHHHHHHHHHHHHHC
T ss_pred             --CCCCHHHHHHHHHHHHhcC
Confidence              3667788999999998765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.65  E-value=9.5e-06  Score=87.58  Aligned_cols=340  Identities=10%  Similarity=-0.008  Sum_probs=180.8

Q ss_pred             cC-ChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004829          279 LG-QYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV  357 (728)
Q Consensus       279 ~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  357 (728)
                      .| +++.|...|++++...+.                        |+++.+..+|++++..        .| ....|...
T Consensus         7 ~~~~i~~aR~vyer~l~~~P~------------------------~~~e~~~~iferal~~--------~p-s~~LW~~Y   53 (493)
T 2uy1_A            7 MGVELSSPSAIMEHARRLYMS------------------------KDYRSLESLFGRCLKK--------SY-NLDLWMLY   53 (493)
T ss_dssp             -----CCHHHHHHHHHHHHHT------------------------TCHHHHHHHHHHHSTT--------CC-CHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHCCC------------------------CCHHHHHHHHHHHhcc--------CC-CHHHHHHH
Confidence            35 366677777776665410                        6677777777777764        33 22344444


Q ss_pred             HHHHHHhCC-HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhcCCChhH
Q 004829          358 AEAHVQSLQ-FDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICD----SKGDYEAALEHYVLASMSMAANGHELDV  432 (728)
Q Consensus       358 a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~  432 (728)
                      .......+. .+.....|+.++.......  ...   .+|......+.    ..++.+.+...|++|+..    +. ...
T Consensus        54 ~~f~~~~~~~~~~i~~~fe~al~~vg~d~--~s~---~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~----P~-~~~  123 (493)
T 2uy1_A           54 IEYVRKVSQKKFKLYEVYEFTLGQFENYW--DSY---GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT----PM-GSL  123 (493)
T ss_dssp             HHHHHHHC----CTHHHHHHHHHHSTTCT--TCH---HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS----CC-TTH
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHcCCCc--ccH---HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC----hh-hhH
Confidence            444444442 3445556666665432111  111   23333333222    235567777788877642    10 111


Q ss_pred             HHHHHHHHHH-------------HHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---------
Q 004829          433 ASIDCSIGDA-------------YLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK---------  490 (728)
Q Consensus       433 ~~~~~~la~~-------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------  490 (728)
                      ...|......             -.....+..|...|+.+.......    ..   ..+......  ..++         
T Consensus       124 ~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~----s~---~~W~~y~~~--E~~~~~~~~~~~~  194 (493)
T 2uy1_A          124 SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW----SV---KNAARLIDL--EMENGMKLGGRPH  194 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----SH---HHHHHHHHH--HHTCTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc----cH---HHHHHHHHH--HhcCCccCcchhh
Confidence            1111111111             111233444555555554443221    11   123222222  2222         


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH
Q 004829          491 LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYY  570 (728)
Q Consensus       491 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  570 (728)
                      .......|++++....         ....+|...+..+...|+.+.|...|++|+.. +...       .++...+..  
T Consensus       195 ~~Rv~~~ye~al~~~p---------~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-------~l~~~y~~~--  255 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFY---------YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-------FLSLYYGLV--  255 (493)
T ss_dssp             HHHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-------HHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-------HHHHHHHhh--
Confidence            3456778999998742         23677888899999999999999999999998 5431       112111211  


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhC-----CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004829          571 MTGNYSDSYNTLKSAISKFRTSG-----EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGV  645 (728)
Q Consensus       571 ~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  645 (728)
                        .+.++.   ++.....+....     .........++...+..+...++.+.|...|++| ..      +  +....+
T Consensus       256 --~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~--~~~~~v  321 (493)
T 2uy1_A          256 --MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------E--GVGPHV  321 (493)
T ss_dssp             --TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------S--CCCHHH
T ss_pred             --cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------C--CCChHH
Confidence              111121   222222110000     0012223466777778877888899999999998 32      1  112335


Q ss_pred             HHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004829          646 YSNLAGTYDAMG-RIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTF  712 (728)
Q Consensus       646 ~~~La~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~l  712 (728)
                      +...|.+....+ +.+.|...|+.+++.+     ++.|+   .+...+......|+.+.|. ..++.+
T Consensus       322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~~---~~~~yid~e~~~~~~~~aR-~l~er~  380 (493)
T 2uy1_A          322 FIYCAFIEYYATGSRATPYNIFSSGLLKH-----PDSTL---LKEEFFLFLLRIGDEENAR-ALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCHH---HHHHHHHHHHHHTCHHHHH-HHHHHS
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCHH---HHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence            555666666555 6999999999999843     33443   4455677788899999888 655554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.65  E-value=1.1e-08  Score=85.79  Aligned_cols=94  Identities=10%  Similarity=0.127  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                      +..+..+|.++...|++++|+.+|++++.+        .+....++.++|.++...|++++|+..|++++.+        
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--------   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            457789999999999999999999999987        3334678999999999999999999999999988        


Q ss_pred             ChhH------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 004829          639 HHDT------LGVYSNLAGTYDAMGRIDDAIEILEY  668 (728)
Q Consensus       639 ~~~~------~~~~~~La~~~~~~g~~~~A~~~~~~  668 (728)
                      .|..      ..+++.+|.++..+|+++.|+..+++
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            5554      77899999999999988887765543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.63  E-value=3.2e-07  Score=77.49  Aligned_cols=87  Identities=16%  Similarity=0.162  Sum_probs=76.7

Q ss_pred             hHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829          283 NEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHV  362 (728)
Q Consensus       283 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  362 (728)
                      ++|+..|++++...     +..+    .+++.+|.+|...|++++|+.+|++++.+        .|....++..+|.+|.
T Consensus         2 ~~a~~~~~~al~~~-----p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~   64 (115)
T 2kat_A            2 QAITERLEAMLAQG-----TDNM----LLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CCHHHHHHHHHTTT-----CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-----CCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHH
Confidence            46888999998865     4443    35999999999999999999999999998        7888889999999999


Q ss_pred             HhCCHHHHHHHHHHHHHHHHHcCC
Q 004829          363 QSLQFDEAEKICQMALDIHRENTS  386 (728)
Q Consensus       363 ~~g~~~~A~~~~~~al~~~~~~~~  386 (728)
                      ..|++++|+..|++++.+.+....
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           65 GQGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999887653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.63  E-value=9.3e-08  Score=80.88  Aligned_cols=82  Identities=11%  Similarity=0.047  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829          577 DSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       577 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~  656 (728)
                      +|+..|+++++.        .+....+++.+|.++...|++++|+.+|++++.+        +|....+++.+|.+|..+
T Consensus         3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~   66 (115)
T 2kat_A            3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ   66 (115)
T ss_dssp             CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence            567778888765        2233578999999999999999999999999998        788888999999999999


Q ss_pred             CChHHHHHHHHHHHHHHH
Q 004829          657 GRIDDAIEILEYVVGMRE  674 (728)
Q Consensus       657 g~~~~A~~~~~~al~~~~  674 (728)
                      |++++|+.+|++++.+..
T Consensus        67 g~~~~A~~~~~~al~~~~   84 (115)
T 2kat_A           67 GDRAGARQAWESGLAAAQ   84 (115)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcc
Confidence            999999999999999763

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.61  E-value=2.4e-07  Score=74.18  Aligned_cols=86  Identities=27%  Similarity=0.375  Sum_probs=69.2

Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829          430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN  509 (728)
Q Consensus       430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  509 (728)
                      +....++..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++.+.    
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----   73 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----   73 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----
Confidence            455678888899999999999999999999887        66667788889999999999999999999998882    


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcC
Q 004829          510 HGIPSEEIASGLIDIAAIYQSMN  532 (728)
Q Consensus       510 ~~~~~~~~~~~~~~la~~~~~~g  532 (728)
                           |....++..+|.++...|
T Consensus        74 -----p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           74 -----PNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             -----TTCHHHHHHHHHHHHHHC
T ss_pred             -----CCCHHHHHHHHHHHHhcC
Confidence                 334567778888776654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.53  E-value=6e-07  Score=78.70  Aligned_cols=110  Identities=15%  Similarity=0.105  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 004829          532 NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLAC  611 (728)
Q Consensus       532 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  611 (728)
                      +++++|+.+|+++.+.-     ...    ..  +|.+|...+.+++|+.+|+++.+.          ..+.++++||.+|
T Consensus         9 ~d~~~A~~~~~~aa~~g-----~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y   67 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-----EMF----GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-----CTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-----CHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHH
Confidence            47899999999998652     221    22  899999999999999999999875          1257899999999


Q ss_pred             HH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004829          612 VQ----RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA----MGRIDDAIEILEYVVGM  672 (728)
Q Consensus       612 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~al~~  672 (728)
                      ..    .+++++|+.+|+++.+.          ....++++||.+|..    .+++++|+.+|+++.+.
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            98    89999999999999875          234588999999999    99999999999999983

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.53  E-value=3.5e-07  Score=75.11  Aligned_cols=87  Identities=21%  Similarity=0.283  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004829          600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT  679 (728)
Q Consensus       600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~  679 (728)
                      ...+++.+|.+|...|++++|+.+|++++++        +|....+++.+|.+|..+|++++|+.+|++++.+....   
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~---   74 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE---   74 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC---
Confidence            3578999999999999999999999999999        88888899999999999999999999999999986432   


Q ss_pred             CChHHHHHHHHHHHHHHHhCC
Q 004829          680 ANPDVEDEKRRLAELLKEAGR  700 (728)
Q Consensus       680 ~~p~~~~~~~~La~~~~~~g~  700 (728)
                         ........+..++...+.
T Consensus        75 ---~~~~~~~~l~~~l~~~~~   92 (100)
T 3ma5_A           75 ---GTQKDLSELQDAKLKAEG   92 (100)
T ss_dssp             ---SCHHHHHHHHHHHHHHHT
T ss_pred             ---CchhHHHHHHHHHHHccc
Confidence               112344455555554443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.43  E-value=1.1e-06  Score=77.01  Aligned_cols=109  Identities=17%  Similarity=0.203  Sum_probs=91.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829          238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD  317 (728)
Q Consensus       238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  317 (728)
                      ++++|+.+|+++...      +.  +.   +.  +|.+|...+.+++|+.+|+++.+..       +    ..+++.||.
T Consensus        10 d~~~A~~~~~~aa~~------g~--~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------~----~~a~~~Lg~   65 (138)
T 1klx_A           10 DLKKAIQYYVKACEL------NE--MF---GC--LSLVSNSQINKQKLFQYLSKACELN-------S----GNGCRFLGD   65 (138)
T ss_dssp             HHHHHHHHHHHHHHT------TC--TT---HH--HHHHTCTTSCHHHHHHHHHHHHHTT-------C----HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcC------CC--Hh---hh--HHHHHHcCCCHHHHHHHHHHHHcCC-------C----HHHHHHHHH
Confidence            789999999999864      22  22   23  8999999999999999999998752       2    235999999


Q ss_pred             HHHH----hCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 004829          318 TYAM----LGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ----SLQFDEAEKICQMALDI  380 (728)
Q Consensus       318 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  380 (728)
                      +|..    .+++++|+.+|+++.+.          ....+++.||.+|..    .+++++|+.+|+++.+.
T Consensus        66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            9999    89999999999999865          345789999999999    89999999999999865

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.42  E-value=1.6e-06  Score=71.07  Aligned_cols=69  Identities=12%  Similarity=0.060  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q 004829          310 AGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS  386 (728)
Q Consensus       310 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  386 (728)
                      .+++.+|.+|...|++++|+.+|++++++        +|....++..+|.+|...|++++|+..|++++.+.+...+
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            35999999999999999999999999999        7888889999999999999999999999999999887654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.33  E-value=7.1e-07  Score=72.89  Aligned_cols=92  Identities=13%  Similarity=0.107  Sum_probs=73.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 004829          605 NQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLG-VYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPD  683 (728)
Q Consensus       605 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~  683 (728)
                      +.+|.++...|++++|+..|+++++.        +|.... +++.+|.+|..+|++++|+.+|++++.+.        |.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--------PD   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CC
Confidence            46788999999999999999999998        788888 99999999999999999999999999853        44


Q ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          684 VEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       684 ~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                      ...++..        +.+.++. ..++.++..+|....
T Consensus        68 ~~~~~~~--------~~~~~a~-~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           68 SPALQAR--------KMVMDIL-NFYNKDMYNQLEHHH   96 (99)
T ss_dssp             STHHHHH--------HHHHHHH-HHHCCTTHHHHCCSS
T ss_pred             cHHHHHH--------HHHHHHH-HHHHHHhccCccccc
Confidence            4444422        4566666 666666666665543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.30  E-value=1.6e-06  Score=70.67  Aligned_cols=90  Identities=10%  Similarity=0.168  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcH
Q 004829          437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVAS-VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSE  515 (728)
Q Consensus       437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  515 (728)
                      +.+|.++...|++++|+..|+++++.        .|.... ++..+|.+|...|++++|+.+|++++.+...        
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD--------   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------
Confidence            56788999999999999999999998        777777 9999999999999999999999999998422        


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       516 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                       ...++..        +.+.+++.+|+++....+..
T Consensus        68 -~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           68 -SPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             -STHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             -cHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence             2222211        56778888888887777655

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.24  E-value=0.00023  Score=73.01  Aligned_cols=211  Identities=13%  Similarity=0.103  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 004829          395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS-LARFDEAIFSYHKALTAFKSAKGENHPA  473 (728)
Q Consensus       395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~  473 (728)
                      +...||.+|...|++++-.+++......+.... ....+.....+-..+.. -+..+.-++.+..+++.+...    ...
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r~   95 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KRT   95 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HHH
Confidence            467899999999999999888876543332211 12223334444444433 355566677777777766643    333


Q ss_pred             HHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 004829          474 VAS--VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       474 ~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  551 (728)
                      ...  .-..||.+|+..|+|.+|...+.+.++...+..   +......++.....+|...+++.++..+|.+|.......
T Consensus        96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d---d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai  172 (394)
T 3txn_A           96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLD---DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI  172 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS---CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence            333  445899999999999999999999999887743   457788899999999999999999999999999988766


Q ss_pred             CCCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCC
Q 004829          552 PGQQSTIAGIEAQMGVMYY-MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT  616 (728)
Q Consensus       552 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  616 (728)
                      +.++...+.+...-|.++. ..++|.+|..+|-++..-+...+   .+....++..++.+-+..++
T Consensus       173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCC
Confidence            4444466677777888999 89999999999999976655333   23333445555666665555

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.15  E-value=0.00041  Score=71.12  Aligned_cols=215  Identities=13%  Similarity=0.061  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHcCCCCCC
Q 004829          434 SIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-IGKLRDSKSYCENALKIYGKPNHGI  512 (728)
Q Consensus       434 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  512 (728)
                      .+...||.+|...|++++-.+++......+...   .....+.....+-..+.. -+..+.-++.+..+++......   
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---   93 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEK---   93 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH---
Confidence            466889999999999999988887776554332   123344444455444443 3455666777777777665411   


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004829          513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS  592 (728)
Q Consensus       513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  592 (728)
                      ...-....-..+|.+|+..|+|.+|...+.+.++-.... ++...+..++.....+|..++++.++..++.+|.......
T Consensus        94 r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai  172 (394)
T 3txn_A           94 RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI  172 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence            111122234589999999999999999999999988775 4556777888889999999999999999999999887665


Q ss_pred             CCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh
Q 004829          593 GEKKSALFGIALNQMGLACV-QRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRI  659 (728)
Q Consensus       593 ~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~  659 (728)
                      . .++...+.....-|..++ ..++|..|..+|-++..-+...   ..|....++..++.+-...++.
T Consensus       173 ~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r  236 (394)
T 3txn_A          173 Y-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQS  236 (394)
T ss_dssp             C-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCG
T ss_pred             C-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCH
Confidence            3 335556777888899999 8999999999999987655432   2454455555566666666653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.07  E-value=4.3e-05  Score=62.83  Aligned_cols=81  Identities=17%  Similarity=0.126  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 004829          394 ADRRLMGLICDSKGDYEAALEHYVLASMSMAANG-HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHP  472 (728)
Q Consensus       394 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  472 (728)
                      ...+.+|..++..|+|..|+.+|++|+....... .......++..+|.++..+|+++.|+.++++++.+        .|
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~P   77 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP   77 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CC
Confidence            3477899999999999999999999998875443 23467789999999999999999999999999998        77


Q ss_pred             HHHHHHHHHH
Q 004829          473 AVASVFVRLA  482 (728)
Q Consensus       473 ~~~~~~~~la  482 (728)
                      ....++.+++
T Consensus        78 ~~~~~~~n~~   87 (104)
T 2v5f_A           78 EHQRANGNLK   87 (104)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHhhHH
Confidence            7666666665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.06  E-value=4.6e-05  Score=62.64  Aligned_cols=71  Identities=8%  Similarity=0.103  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                      +.-++.+|..++..++|..|+..|++|++..............++..+|.+++++|++++|+.++++++.+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            34578999999999999999999999999887553334567788999999999999999999999999987

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.01  E-value=0.00028  Score=68.04  Aligned_cols=107  Identities=17%  Similarity=0.201  Sum_probs=84.4

Q ss_pred             ChhHHHHHHHHHHHHHH---h--C------CHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHc-----CC
Q 004829          429 ELDVASIDCSIGDAYLS---L--A------RFDEAIFSYHKALTAFKSAKGENHPA--VASVFVRLADLYHKI-----GK  490 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~  490 (728)
                      .+..+..+++.|.+...   .  |      ....|...+++++++        +|.  ...++..||.+|...     |+
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd  219 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGG  219 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence            35556666666666543   1  2      356888889999998        666  667999999999995     99


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcC
Q 004829          491 LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       491 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~  551 (728)
                      .++|..+|++++++...        .....++..|..++. .|++++|..++++++..-+..
T Consensus       220 ~ekA~~~ferAL~LnP~--------~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          220 MEKAHTAFEHLTRYCSA--------HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHHCCT--------TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHHHhCCC--------CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999999999422        125678888999888 599999999999999986664

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.01  E-value=0.00013  Score=73.46  Aligned_cols=134  Identities=9%  Similarity=-0.035  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHc
Q 004829          312 CMQLGDTYAMLG---QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQF----DEAEKICQMALDIHREN  384 (728)
Q Consensus       312 ~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~~~~  384 (728)
                      ++..|..+...+   .+.+|+.+|++++++        +|..+.++..++.+|.....+    ......+..++......
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~  270 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL  270 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence            444455555544   458999999999999        899988888888887632211    12222233333322111


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829          385 TSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA  462 (728)
Q Consensus       385 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  462 (728)
                      .  .....+.++..++..+...|++++|+.++++|+.+-      +. ..++..+|.++...|++++|++.|.+|+.+
T Consensus       271 ~--~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln------~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          271 P--ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE------MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             G--GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             c--cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            1  111224567788888888999999999999999871      22 467789999999999999999999999999

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.96  E-value=0.00017  Score=72.56  Aligned_cols=122  Identities=16%  Similarity=0.126  Sum_probs=87.9

Q ss_pred             ChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 004829          490 KLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNE----LEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM  565 (728)
Q Consensus       490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  565 (728)
                      .+.+|+.+|++|+++         .|..+.++..++.+|.....    .......+..++...... ...+..+.++..+
T Consensus       214 ~~~~A~~l~e~Al~l---------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~-~~~~~~a~~~~al  283 (372)
T 3ly7_A          214 SLNRASELLGEIVQS---------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL-PELNNLSIIYQIK  283 (372)
T ss_dssp             HHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-GGGTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc-ccCCcCHHHHHHH
Confidence            357999999999999         45566677766666653211    112223333444432222 2223446677888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          566 GVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       566 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      +..+...|++++|+..+++|+.+        .+ ...++..+|.++...|++++|++.|.+|+.+
T Consensus       284 al~~l~~gd~d~A~~~l~rAl~L--------n~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          284 AVSALVKGKTDESYQAINTGIDL--------EM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhc--------CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            88888899999999999999998        12 1457788999999999999999999999999

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.88  E-value=0.00072  Score=72.83  Aligned_cols=168  Identities=15%  Similarity=0.144  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHH
Q 004829          520 GLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGN---------YSDSYNTLKSAISKFR  590 (728)
Q Consensus       520 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~  590 (728)
                      .+..+-..+.+.|+.++|+.+|++..+.     |..+. ..+|+.+-.++...+.         .++|...|++....  
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--   99 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----GVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--   99 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence            3555667889999999999999998764     33332 2355556566655443         56777777765432  


Q ss_pred             HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829          591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV  670 (728)
Q Consensus       591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al  670 (728)
                        +-. +  ...+|..+...|.+.|++++|..+|++....     + -.|+ ..+|..|-..|.+.|+.++|.++|++..
T Consensus       100 --G~~-P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g-~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A          100 --KVV-P--NEATFTNGARLAVAKDDPEMAFDMVKQMKAF-----G-IQPR-LRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             --TCC-C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T-CCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCc-cceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence              222 1  2467888999999999999999999987653     1 1344 4478889999999999999999999887


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829          671 GMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS  715 (728)
Q Consensus       671 ~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~  715 (728)
                      +.     | -.|+ ...+..|...|.+.|++++|. +.++.+.+.
T Consensus       168 ~~-----G-~~Pd-~~ty~~Li~~~~~~g~~d~A~-~ll~~Mr~~  204 (501)
T 4g26_A          168 ES-----E-VVPE-EPELAALLKVSMDTKNADKVY-KTLQRLRDL  204 (501)
T ss_dssp             HT-----T-CCCC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             hc-----C-CCCC-HHHHHHHHHHHhhCCCHHHHH-HHHHHHHHh
Confidence            62     1 2344 456888899999999999999 888887653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.85  E-value=0.001  Score=71.73  Aligned_cols=168  Identities=7%  Similarity=-0.010  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHH
Q 004829          477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMN---------ELEQAVKLLNKALKI  547 (728)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~  547 (728)
                      .+..+-..+.+.|++++|+.+|++....--.       | ...+|..+-.++...+         ..+.|..+|++....
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~-------p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~   99 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQ-------L-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD   99 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC-------C-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------C-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh
Confidence            3455567888999999999999998876322       1 2345555656665443         467888888876542


Q ss_pred             HhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          548 YGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEA  627 (728)
Q Consensus       548 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  627 (728)
                           +..+. ..+|..+...|.+.|++++|..+|++....    +-. +  ...+|..+-..|.+.|+.++|..+|++.
T Consensus       100 -----G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~-P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A          100 -----KVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF----GIQ-P--RLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             -----TCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCC-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-C--ccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence                 33332 357788999999999999999999887642    221 1  2467888889999999999999999987


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          628 RTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       628 l~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      .+.      .-.|+ ..+|..|..+|.+.|+.++|.++|++..+.
T Consensus       167 ~~~------G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          167 VES------EVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             Hhc------CCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            653      12344 347888999999999999999999987653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.82  E-value=6.8e-05  Score=72.24  Aligned_cols=103  Identities=18%  Similarity=0.141  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHc-----CChHH
Q 004829          600 FGIALNQMGLACVQ---R--Y------TINEAADLFEEARTILEKEYGPYHHD--TLGVYSNLAGTYDAM-----GRIDD  661 (728)
Q Consensus       600 ~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~La~~~~~~-----g~~~~  661 (728)
                      .+..+++.|.++..   .  |      ....|...+++++++        +|.  ...++..||.+|...     |+.++
T Consensus       151 dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ek  222 (301)
T 3u64_A          151 DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEK  222 (301)
T ss_dssp             GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHH
Confidence            34556666655432   1  2      367899999999999        888  455999999999996     99999


Q ss_pred             HHHHHHHHHHHHHHHcCCCChHH-HHHHHHHHHHHHH-hCChhHHHHHHHHHHHhhcccc
Q 004829          662 AIEILEYVVGMREEKLGTANPDV-EDEKRRLAELLKE-AGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       662 A~~~~~~al~~~~~~~~~~~p~~-~~~~~~La~~~~~-~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      |..+|++++++.        |.. ...++..|..+.. +|++++|. +.++.++..+|..
T Consensus       223 A~~~ferAL~Ln--------P~~~id~~v~YA~~l~~~~gd~~~a~-~~L~kAL~a~p~~  273 (301)
T 3u64_A          223 AHTAFEHLTRYC--------SAHDPDHHITYADALCIPLNNRAGFD-EALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHC--------CTTCSHHHHHHHHHTTTTTTCHHHHH-HHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHhC--------CCCCchHHHHHHHHHHHhcCCHHHHH-HHHHHHHcCCCCC
Confidence            999999999964        654 7888899999988 49999999 9999999988874

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.012  Score=62.06  Aligned_cols=218  Identities=12%  Similarity=0.033  Sum_probs=143.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829          407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH  486 (728)
Q Consensus       407 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  486 (728)
                      |++..|++.+.......+...+......+...+..++...++++...+++.-...    ..| ..+...........-|.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~-qlk~ai~~~V~~~~~~l  104 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHG-QLKLSIQYMIQKVMEYL  104 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTT-TSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhh-hhHHHHHHHHHHHHHHH
Confidence            5677888777555555555667777788888899999999999887776543221    111 12222222333332232


Q ss_pred             -HcCChHHHHHHHHHHHHHHcCCCCCC--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 004829          487 -KIGKLRDSKSYCENALKIYGKPNHGI--PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEA  563 (728)
Q Consensus       487 -~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  563 (728)
                       .....+.  ......+........+.  -....+.....|+.+|...|++.+|...+.....-.... ........++.
T Consensus       105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~~~~~kve~~l  181 (445)
T 4b4t_P          105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-MEMSEKIQFIL  181 (445)
T ss_dssp             HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-SCHHHHHHHHH
T ss_pred             hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence             2222222  22223333332222121  123467778889999999999999999998876443322 23345667778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                      ....+|...+++.+|..++.++......... .+......+..+|.++...++|.+|..+|.++......
T Consensus       182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~-~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          182 EQMELSILKGDYSQATVLSRKILKKTFKNPK-YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhhcccCC-cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            8899999999999999999998655444332 24445677888899999999999999999999886544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.76  E-value=0.00037  Score=60.44  Aligned_cols=65  Identities=12%  Similarity=0.041  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCC-h-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          601 GIALNQMGLACVQRY---TINEAADLFEEARTILEKEYGPYH-H-DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       601 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~-~-~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      ..+.+++|+++.+.+   +.++++.+|+..++.        + | ...+++++||..|.++|+|++|+.++++++++.
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie  101 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  101 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            578999999999988   677999999999887        5 6 568899999999999999999999999999964

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.74  E-value=0.00033  Score=61.09  Aligned_cols=111  Identities=13%  Similarity=-0.048  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Q 004829          266 VMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE  345 (728)
Q Consensus       266 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  345 (728)
                      .+++..-...++..|.|+.|+-....++.+.......-.+...+.++..+|.+++..++|..|...|+++|+..+.+...
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            34466677788899999999999999888865444444566677889999999999999999999999999987743211


Q ss_pred             C-----------------ChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829          346 T-----------------DHRVGETCRYVAEAHVQSLQFDEAEKICQM  376 (728)
Q Consensus       346 ~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  376 (728)
                      .                 .+...++.+.++.||...+++++|+..++.
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            1                 122347889999999999999999988665

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.73  E-value=0.00048  Score=60.02  Aligned_cols=113  Identities=12%  Similarity=0.049  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC
Q 004829          222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG  301 (728)
Q Consensus       222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  301 (728)
                      -..++.....++..| .|+.|+-.+..++.+.....+..+....+.++..+|..++..++|..|...|++|+...+....
T Consensus        20 ~~~l~dqik~L~d~~-LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAG-LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             -CCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            456888899999997 9999999999999886553322223446778899999999999999999999999988753221


Q ss_pred             Cch----------------hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          302 QDH----------------ALAKFAGCMQLGDTYAMLGQIENSILCYTAG  335 (728)
Q Consensus       302 ~~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  335 (728)
                      ...                .....++.+.++.||..++++.+|+..++..
T Consensus        99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            110                1113356899999999999999999987753

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.71  E-value=0.00014  Score=62.99  Aligned_cols=88  Identities=14%  Similarity=0.029  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHH
Q 004829          618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG---RIDDAIEILEYVVGMREEKLGTANP-DVEDEKRRLAE  693 (728)
Q Consensus       618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~  693 (728)
                      ..+...|.+.+..        .+....+.+++|+++.+.+   +.++++.+|+..++.       +.| ...++++.||.
T Consensus        15 ~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv   79 (152)
T 1pc2_A           15 LKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAV   79 (152)
T ss_dssp             HHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHH
Confidence            4455555555443        3445678999999999988   667999999998883       336 67899999999


Q ss_pred             HHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          694 LLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       694 ~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                      .+.+.|++++|+ ++++.+++..|.+..
T Consensus        80 ~~~kl~~Y~~A~-~y~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           80 GNYRLKEYEKAL-KYVRGLLQTEPQNNQ  106 (152)
T ss_dssp             HHHHTSCHHHHH-HHHHHHHHHCTTCHH
T ss_pred             HHHHccCHHHHH-HHHHHHHhcCCCCHH
Confidence            999999999999 999999999997643

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.67  E-value=0.00032  Score=55.95  Aligned_cols=64  Identities=16%  Similarity=0.068  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          601 GIALNQMGLACVQRYT---INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      +.++..+|.+++..++   .++|..++++++.+        +|....+++.+|..++..|+|++|+.+|+++++.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4678888998876665   79999999999999        9999999999999999999999999999999873

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.55  E-value=0.00018  Score=57.44  Aligned_cols=71  Identities=21%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829          639 HHDTLGVYSNLAGTYDAMGR---IDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS  715 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~  715 (728)
                      +|....++..+|.++...++   .++|..++++++.+        +|....+++.+|.++...|++++|+ ..++.+++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai-~~w~~~l~~   72 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAI-DTWVLLLDS   72 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhh
Confidence            34455688899999976666   79999999999995        5888999999999999999999999 999999998


Q ss_pred             ccc
Q 004829          716 NSQ  718 (728)
Q Consensus       716 ~~~  718 (728)
                      +|.
T Consensus        73 ~p~   75 (93)
T 3bee_A           73 NDP   75 (93)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            887

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.037  Score=58.33  Aligned_cols=220  Identities=12%  Similarity=0.024  Sum_probs=140.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 004829          365 LQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYL  444 (728)
Q Consensus       365 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  444 (728)
                      ++++.|++.+....+..+...+.  .....++..+..+++..|+++...+++...   ....+..............-|.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~--~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L---skkr~qlk~ai~~~V~~~~~~l  104 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDL--ASSKEVLAKIVDLLASRNKWDDLNEQLTLL---SKKHGQLKLSIQYMIQKVMEYL  104 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCST--TTCHHHHHHHHHHHHHHSCHHHHHHHHHHH---HTTTTTSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccch--hhHHHHHHHHHHHHHHhccHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHH
Confidence            56777777664444433333322  223445777888899999998887765432   2222222222222222222222


Q ss_pred             -HhCCHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHH
Q 004829          445 -SLARFDEAIFSYHKALTAFKSAKGEN---HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASG  520 (728)
Q Consensus       445 -~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  520 (728)
                       .....+.  ......++.......+.   ....+.....|+.+|...|++.+|...+.....-....   .+.......
T Consensus       105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~---~~~~~kve~  179 (445)
T 4b4t_P          105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS---MEMSEKIQF  179 (445)
T ss_dssp             HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS---SCHHHHHHH
T ss_pred             hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---ccHHHHHHH
Confidence             1222221  11122222211111110   23356777889999999999999999999887654432   345677888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004829          521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE  594 (728)
Q Consensus       521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  594 (728)
                      +.....+|...+++.+|..++.++..........+......+...|.++...++|.+|..+|.++.......++
T Consensus       180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d  253 (445)
T 4b4t_P          180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSD  253 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCC
Confidence            99999999999999999999999876555554444556777888999999999999999999999887655443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.98  E-value=0.0047  Score=51.42  Aligned_cols=88  Identities=15%  Similarity=0.041  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHH
Q 004829          618 NEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDD---AIEILEYVVGMREEKLGTANP-DVEDEKRRLAE  693 (728)
Q Consensus       618 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~  693 (728)
                      ..+...|.+.+..        .+....+.+++|+++.+..+...   ++.+++..+       ....| ...+.++.||.
T Consensus        18 ~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~~p~~~Rd~lY~LAv   82 (126)
T 1nzn_A           18 LKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKGSKEEQRDYVFYLAV   82 (126)
T ss_dssp             HHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCCcchHHHHHHHHHH
Confidence            4445555555543        33455688999999999887665   555555444       44446 67899999999


Q ss_pred             HHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          694 LLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       694 ~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                      .+.+.|+|++|. ++++.+++..|.+..
T Consensus        83 g~yklg~Y~~A~-~~~~~lL~~eP~n~Q  109 (126)
T 1nzn_A           83 GNYRLKEYEKAL-KYVRGLLQTEPQNNQ  109 (126)
T ss_dssp             HHHHTTCHHHHH-HHHHHHHHHCTTCHH
T ss_pred             HHHHhhhHHHHH-HHHHHHHHhCCCCHH
Confidence            999999999999 999999999998643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.58  E-value=0.028  Score=46.74  Aligned_cols=66  Identities=11%  Similarity=0.009  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          601 GIALNQMGLACVQRYTINE---AADLFEEARTILEKEYGPYHH-DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      ..+.+++|+++....+...   ++.+++..+.       ...| ...+.++.||..++++|+|++|..+++.++++.
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e  104 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  104 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            4688899999999887665   6666555444       3336 677899999999999999999999999999953

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.55  E-value=0.04  Score=46.91  Aligned_cols=110  Identities=22%  Similarity=0.159  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          431 DVASIDCSIGDAYLSLARF------DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       431 ~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      .....|..........|+.      ++-++.|++|+..............+..+...|.. ...++.++|...|+.++.+
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence            3345566666666666888      77788888888764333223456677788888866 5679999999999999998


Q ss_pred             HcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 004829          505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK  550 (728)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  550 (728)
                       .+        ..+.+|...|..-.++|+...|.+.+.+|+.+.+.
T Consensus        90 -hK--------kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           90 -CK--------KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             -CT--------TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             -hH--------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence             22        13889999999999999999999999999987554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.27  E-value=0.025  Score=48.11  Aligned_cols=105  Identities=12%  Similarity=0.007  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          560 GIEAQMGVMYYMTGNY------SDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       560 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                      ..+..........|+.      ++-++.|++|+.............+...+...|.. ...++.++|.+.|+.++.+   
T Consensus        14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---   89 (161)
T 4h7y_A           14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---   89 (161)
T ss_dssp             HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence            3444445555555777      77778888888875443333445566777777755 5669999999999999997   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                           |...+.++...|..-.++|+...|...+.+++.+.
T Consensus        90 -----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           90 -----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             -----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             -----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence                 55558899999999999999999999999999853

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.76  E-value=0.2  Score=51.61  Aligned_cols=131  Identities=15%  Similarity=0.112  Sum_probs=92.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCCCCcHHH
Q 004829          522 IDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDS-YNTLKSAISKFRTSGEKKSALF  600 (728)
Q Consensus       522 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~~  600 (728)
                      ...|......|+.+.|...+.+|+.++...+-..            +.  ...|-.+ ...+++.              .
T Consensus       119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~------------~~--~~~w~~~~r~~l~~~--------------~  170 (388)
T 2ff4_A          119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD------------LR--DFQFVEPFATALVED--------------K  170 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG------------GT--TSTTHHHHHHHHHHH--------------H
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC------------CC--chhHHHHHHHHHHHH--------------H
Confidence            3344444567899999999999998875331100            00  0112111 1111111              2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC-
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT-  679 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~-  679 (728)
                      ..++..++.++...|++.+|+..+..++..        +|....++..|..+|...|+..+|+..|+++.....+-+|. 
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~  242 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  242 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            245666788899999999999999999988        88888899999999999999999999999999988887773 


Q ss_pred             CChHHHHHH
Q 004829          680 ANPDVEDEK  688 (728)
Q Consensus       680 ~~p~~~~~~  688 (728)
                      -.|.....+
T Consensus       243 P~~~l~~l~  251 (388)
T 2ff4_A          243 PGPTLRALN  251 (388)
T ss_dssp             CCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            334444444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.72  E-value=0.36  Score=55.28  Aligned_cols=162  Identities=14%  Similarity=0.071  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHH
Q 004829          437 CSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEE  516 (728)
Q Consensus       437 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  516 (728)
                      ..+...+...|.+++|+...+.             +..      ...+....|++++|.+..+.       .    +.  
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~-------------~~~------~f~~~l~~~~~~~A~~~~~~-------~----~~--  680 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPD-------------QDQ------KFELALKVGQLTLARDLLTD-------E----SA--  680 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCC-------------HHH------HHHHHHHHTCHHHHHHHHTT-------C----CC--
T ss_pred             HHHHHHHHhCCChHHheecCCC-------------cch------heehhhhcCCHHHHHHHHHh-------h----Cc--
Confidence            5566677778888887765432             211      12334667888888776432       1    12  


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004829          517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK  596 (728)
Q Consensus       517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  596 (728)
                       ...|..+|..+...++++.|+.+|.++-..               ..+..+|...|+.+......+.+..    .+.  
T Consensus       681 -~~~W~~la~~al~~~~~~~A~~~y~~~~d~---------------~~l~~l~~~~~~~~~~~~~~~~a~~----~~~--  738 (814)
T 3mkq_A          681 -EMKWRALGDASLQRFNFKLAIEAFTNAHDL---------------ESLFLLHSSFNNKEGLVTLAKDAET----TGK--  738 (814)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHTCH---------------HHHHHHHHHTTCHHHHHHHHHHHHH----TTC--
T ss_pred             -HhHHHHHHHHHHHcCCHHHHHHHHHHccCh---------------hhhHHHHHHcCCHHHHHHHHHHHHH----cCc--
Confidence             356888999999999999999998876322               1334445555655543333222221    110  


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004829          597 SALFGIALNQMGLACVQRYTINEAADLFEE------ARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRID  660 (728)
Q Consensus       597 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~  660 (728)
                             +.....+|+..|++++|+++|.+      |+.+.+.. ++.......+....+.-+...|+.+
T Consensus       739 -------~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~-~~~~~~i~~~~~~~~~~L~~~~~~~  800 (814)
T 3mkq_A          739 -------FNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTY-GLGDNEVNDIVTKWKENLILNGKNT  800 (814)
T ss_dssp             -------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             -------hHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhccchh
Confidence                   11112345556777777776644      33333331 2111113445555555556666543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.71  E-value=0.2  Score=57.50  Aligned_cols=47  Identities=19%  Similarity=0.123  Sum_probs=32.2

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004829          319 YAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMAL  378 (728)
Q Consensus       319 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  378 (728)
                      ....|++++|.++.+.             ......|..+|..+...++++.|+.+|.++-
T Consensus       662 ~l~~~~~~~A~~~~~~-------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD-------------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHTCHHHHHHHHTT-------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHHh-------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            3456777777665432             1223567888888888888888888887763

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.054  Score=56.83  Aligned_cols=112  Identities=21%  Similarity=0.124  Sum_probs=90.3

Q ss_pred             ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          429 ELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      ......++..+|..|...|+++.|.+.|.++...+..     .......+..+..++...+++..+..++.++..+....
T Consensus       127 e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~  201 (429)
T 4b4t_R          127 ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG  201 (429)
T ss_dssp             CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence            3445567889999999999999999999998775432     33456788888999999999999999999999887663


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY  548 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  548 (728)
                         .++..........|.++...++|..|..+|-.+...+
T Consensus       202 ---~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          202 ---GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             ---CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             ---CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence               3445555666777888889999999999998876554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.46  E-value=0.16  Score=53.17  Aligned_cols=109  Identities=14%  Similarity=0.172  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829          473 AVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP  552 (728)
Q Consensus       473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  552 (728)
                      ....++..+|..|...|++++|.+.|.++.......      ......+..+..++...+++..+..++.++..+.... 
T Consensus       129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-  201 (429)
T 4b4t_R          129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-  201 (429)
T ss_dssp             CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-
Confidence            345678889999999999999999999998876542      2367788889999999999999999999998887665 


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                      +++..........|.++...++|..|..+|..+...
T Consensus       202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            445555566667788889999999999999887654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=95.38  E-value=2.4  Score=41.89  Aligned_cols=223  Identities=13%  Similarity=0.047  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHcCCCCCCC
Q 004829          435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKL-RDSKSYCENALKIYGKPNHGIP  513 (728)
Q Consensus       435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~  513 (728)
                      +++.-+..+.+.|++..|.++..-.++.+.+..-+-.   ......+..++.....- ..=..+.++++....+..  ..
T Consensus        57 LL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~---~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g--~~  131 (336)
T 3lpz_A           57 ILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD---GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG--DY  131 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS--SC
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC--CC
Confidence            3344445555666666666666555555554421111   12333444444433321 122345555555543311  11


Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829          514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG  593 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  593 (728)
                      .......+..+|..|...+++.+|..+|-.         +.... +..+..+-.-+...+.                   
T Consensus       132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il---------g~~~s-~~~~a~mL~ew~~~~~-------------------  182 (336)
T 3lpz_A          132 PAGDPELHHVVGTLYVEEGEFEAAEKHLVL---------GTKES-PEVLARMEYEWYKQDE-------------------  182 (336)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHTT---------SCTTH-HHHHHHHHHHHHHTSC-------------------
T ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHh---------cCCch-HHHHHHHHHHHHHhcC-------------------
Confidence            112234566677777777777776666521         11110 0111111111111111                   


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-----------------CCChhHHHHHHHHHHHHHHc
Q 004829          594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG-----------------PYHHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~~~~~~~~~La~~~~~~  656 (728)
                         +.............|+..++...|...+....+.+.....                 +..|.. ... .+..+-...
T Consensus       183 ---~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL-NFl-~lLllt~q~  257 (336)
T 3lpz_A          183 ---SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL-NFI-SMLLLSVQK  257 (336)
T ss_dssp             ---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH-HHH-HHHHHHHHS
T ss_pred             ---CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchH-HHH-HHHHHHHhc
Confidence               1111222333345677789999999988887766543211                 112221 122 222233344


Q ss_pred             CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829          657 GRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR  700 (728)
Q Consensus       657 g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  700 (728)
                      +.    ...|....+.+...+..+.|.....+..+|.+|+....
T Consensus       258 ~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~~  297 (336)
T 3lpz_A          258 GS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQR  297 (336)
T ss_dssp             CC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCCC
T ss_pred             CC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCCC
Confidence            43    35666666666666655533778889999999997643

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.04  E-value=0.14  Score=42.77  Aligned_cols=70  Identities=14%  Similarity=0.033  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccc
Q 004829          643 LGVYSNLAGTYDAMGRI---DDAIEILEYVVGMREEKLGTANP-DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQ  718 (728)
Q Consensus       643 ~~~~~~La~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~  718 (728)
                      ..+.+++|+++.+..+.   .+++.+++..+.        .+| ...+.++.||..+.++|++++|. ++.+.+++..|.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~--------~~~~~~Rd~LYyLAvg~yklgdY~~Ar-~y~d~lL~~eP~  110 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHERN  110 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------HCGGGHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHTTCTT
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------cCcchhHHHHHHHHHHHHHhhhHHHHH-HHHHHHHhhCCC
Confidence            46889999999988765   456777766665        235 57899999999999999999999 999999999998


Q ss_pred             ccc
Q 004829          719 NLK  721 (728)
Q Consensus       719 ~~~  721 (728)
                      +..
T Consensus       111 N~Q  113 (134)
T 3o48_A          111 NKQ  113 (134)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.04  E-value=0.34  Score=40.35  Aligned_cols=64  Identities=5%  Similarity=-0.068  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          601 GIALNQMGLACVQRYT---INEAADLFEEARTILEKEYGPYHH-DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      ..+.+++|+++....+   ..+++.+++..+..        +| ...+.++.||..+.++|+|++|..+.+.++++
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            4788889999988875   45678888777665        55 56789999999999999999999999999984

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.72  E-value=0.23  Score=41.99  Aligned_cols=72  Identities=15%  Similarity=0.054  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhc
Q 004829          641 DTLGVYSNLAGTYDAMGRID---DAIEILEYVVGMREEKLGTANP-DVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSN  716 (728)
Q Consensus       641 ~~~~~~~~La~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~  716 (728)
                      ....+.+++|+++.+..+..   +++.+++..+.        .+| ...+.++.||..+.++|+|++|. ++.+.+++..
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar-~y~d~lL~~e  107 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHE  107 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--------HCCSTHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------cCccchhHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcC
Confidence            34568899999999987654   56666666655        233 57889999999999999999999 9999999999


Q ss_pred             ccccc
Q 004829          717 SQNLK  721 (728)
Q Consensus       717 ~~~~~  721 (728)
                      |.+..
T Consensus       108 P~n~Q  112 (144)
T 1y8m_A          108 RNNKQ  112 (144)
T ss_dssp             CCCHH
T ss_pred             CCcHH
Confidence            98643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.67  E-value=0.35  Score=53.78  Aligned_cols=123  Identities=11%  Similarity=0.052  Sum_probs=84.0

Q ss_pred             cCC-HHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH--H-cCCHHHHHHHHHHHHHHHHH----hCCCCc-----
Q 004829          531 MNE-LEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYY--M-TGNYSDSYNTLKSAISKFRT----SGEKKS-----  597 (728)
Q Consensus       531 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~--~-~g~~~~A~~~~~~al~~~~~----~~~~~~-----  597 (728)
                      .++ ++.|+.++++.....+..        .++...+.+..  . ..+--+|+..+.++++....    ......     
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~--------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~  332 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIH--------DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL  332 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCch--------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence            445 577888888866654332        12222222221  1 22344677778777754321    111110     


Q ss_pred             -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          598 -ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV  669 (728)
Q Consensus       598 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a  669 (728)
                       +.....+...+..+...|+++-|+.+.++|+..        .|....+|+.|+.+|..+|+|+.|+-.+.-+
T Consensus       333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence             112345666788888999999999999999999        8888899999999999999999999888766

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.63  E-value=7.9  Score=44.02  Aligned_cols=175  Identities=15%  Similarity=0.157  Sum_probs=93.6

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ---QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR  590 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  590 (728)
                      .....-+++.+|.++...++  +++.++...+.-.....+.   ......+...||.+|.-.++ +++...+...+.-  
T Consensus       409 ~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~d--  483 (963)
T 4ady_A          409 RFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYN--  483 (963)
T ss_dssp             HHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhc--
Confidence            44567778888888877664  6777777766543211121   11222344567777776665 3455555555431  


Q ss_pred             HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829          591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVV  670 (728)
Q Consensus       591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al  670 (728)
                          ........+-..||.++...|+-+....++..+.+-       .+ +...-...+|..+...|+.+.+....+...
T Consensus       484 ----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-------~~-e~vrR~aalgLGll~~g~~e~~~~li~~L~  551 (963)
T 4ady_A          484 ----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-------QH-GNITRGLAVGLALINYGRQELADDLITKML  551 (963)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-------SC-HHHHHHHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-------Cc-HHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Confidence                111112246667888888888876666655554431       12 222222344444556677766665555443


Q ss_pred             HHHHHHcCCCChHH-HHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004829          671 GMREEKLGTANPDV-EDEKRRLAELLKEAGRVRNRKSRSLVTFL  713 (728)
Q Consensus       671 ~~~~~~~~~~~p~~-~~~~~~La~~~~~~g~~~~A~~~~l~~ll  713 (728)
                      .       ..+|.. ..+...++..|...|+. .|++..|..+.
T Consensus       552 ~-------~~dp~vRygaa~alglAyaGTGn~-~aIq~LL~~~~  587 (963)
T 4ady_A          552 A-------SDESLLRYGGAFTIALAYAGTGNN-SAVKRLLHVAV  587 (963)
T ss_dssp             H-------CSCHHHHHHHHHHHHHHTTTSCCH-HHHHHHHHHHH
T ss_pred             h-------CCCHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHhc
Confidence            3       133433 22344556666667764 33324555444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.57  E-value=0.39  Score=40.56  Aligned_cols=64  Identities=5%  Similarity=-0.038  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          601 GIALNQMGLACVQRYTI---NEAADLFEEARTILEKEYGPYHH-DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM  672 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~  672 (728)
                      ..+.+++|+++....+.   .+++.+++..+..        +| ...+.++.||..++++|+|++|..+.+.++++
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            56788899999988754   5677777776664        44 56779999999999999999999999999984

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.55  E-value=0.39  Score=50.46  Aligned_cols=144  Identities=10%  Similarity=-0.023  Sum_probs=66.6

Q ss_pred             HHHHhCCHHHHHHHHHHHH--HHHHHcC-CCCcHHHHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHHHHhc
Q 004829          360 AHVQSLQFDEAEKICQMAL--DIHRENT-SPASIEEAADRRLMGLICDSKGDYEAAL----------EHYVLASMSMAAN  426 (728)
Q Consensus       360 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~a~~~~~lg~~~~~~g~~~~A~----------~~~~~al~~~~~~  426 (728)
                      .++..+++++|..+....+  +...... ..-+...+.+|+..+.++...|+.....          ..+..+++.....
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            3456778888888776655  2222111 1122335667888888888888766532          2333334444444


Q ss_pred             CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829          427 GHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       427 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (728)
                      .+....+.+++.+-..|...+.|+.|..+..++.-  ... ...+...+..++.+|.++..+++|.+|.+++..|+..+.
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Ccc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            56677788899999999999999999999988731  110 012345678889999999999999999999999987653

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.40  E-value=0.37  Score=50.63  Aligned_cols=171  Identities=13%  Similarity=0.056  Sum_probs=75.6

Q ss_pred             HHHHcCCHHHHHHHHHHHH--HHHH---hcCCChhHHHHHHHHHHHHHHhCCHHHHHHHH-------HHHHHHHHHh-cC
Q 004829          402 ICDSKGDYEAALEHYVLAS--MSMA---ANGHELDVASIDCSIGDAYLSLARFDEAIFSY-------HKALTAFKSA-KG  468 (728)
Q Consensus       402 ~~~~~g~~~~A~~~~~~al--~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~  468 (728)
                      .+...+++++|..+-...+  ....   ...-+...+.+|+..+.++...|+........       ...+..++.. +.
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            4455677888877665443  1111   12234456777888888888888776543221       1222333322 22


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY  548 (728)
Q Consensus       469 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  548 (728)
                      .|....+..++.+-+.|...+.|+.|..+..++.  +...  .......+..++.+|.++..+++|.+|.+++..|+...
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT--DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            3455667888889999999999999999999874  2111  12355678888999999999999999999999998766


Q ss_pred             hcCCCCCCcHHHHHHHHHHHHHHcCCHH
Q 004829          549 GKTPGQQSTIAGIEAQMGVMYYMTGNYS  576 (728)
Q Consensus       549 ~~~~~~~~~~~~~~~~la~~~~~~g~~~  576 (728)
                      +...........++..+..+-+-+|+..
T Consensus       301 p~~~~a~gfr~~a~K~lI~V~LLlG~iP  328 (523)
T 4b4t_S          301 PHNSKSLGFLQQSNKLHCCIQLLMGDIP  328 (523)
T ss_dssp             SCSSSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CcchhhhhHHHHHHHHHHhHHhhcCCCC
Confidence            5432222223334333333433356543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=94.27  E-value=4.4  Score=39.68  Aligned_cols=131  Identities=11%  Similarity=-0.054  Sum_probs=70.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829          407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH  486 (728)
Q Consensus       407 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  486 (728)
                      |+|=+|.+.|+.....+...+........++.-+..+...|++..|.++..-.++.+.+..   .+........+..++.
T Consensus        27 G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           27 GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE---VKVDDISVARLVRLIA  103 (312)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCSHHHHHHHHHHHT
T ss_pred             cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH
Confidence            4444444444443333333333333334445555666677777777777666666666542   1112233444555544


Q ss_pred             HcCChH-HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829          487 KIGKLR-DSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN  542 (728)
Q Consensus       487 ~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  542 (728)
                      ....-+ .=..+.++++....+...  ........+..+|..|...|++.+|..+|-
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            433211 235666777776654321  112234567788888888888887777664

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.94  E-value=0.3  Score=54.35  Aligned_cols=59  Identities=12%  Similarity=0.015  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA  377 (728)
Q Consensus       311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  377 (728)
                      .+...+..+...|+|+-|+.+.++|+..        .|....+|+.|+.+|..+|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4666788888899999999999999999        7899999999999999999999999776554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.69  E-value=1.7  Score=44.66  Aligned_cols=103  Identities=11%  Similarity=-0.085  Sum_probs=79.6

Q ss_pred             HHHHHHcCChhHHHHHHHHhhhhhhhhcCCch---h----------HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004829          273 AAIHCSLGQYNEAIPVLERSVEIPVLEDGQDH---A----------LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQ  339 (728)
Q Consensus       273 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  339 (728)
                      |......|+.+.|...+.+|+.+..-..-...   .          .....+...++..+...|++.+|+..+..++.. 
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-  200 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-  200 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence            44445568999999999999988742111111   0          112335667788889999999999999999888 


Q ss_pred             HHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004829          340 RQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE  383 (728)
Q Consensus       340 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  383 (728)
                             +|..-.++..+-.+++..|+..+|+..|+++.....+
T Consensus       201 -------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~  237 (388)
T 2ff4_A          201 -------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD  237 (388)
T ss_dssp             -------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                   7888889999999999999999999999999886654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.87  E-value=2.2  Score=37.75  Aligned_cols=102  Identities=15%  Similarity=0.071  Sum_probs=65.5

Q ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHH
Q 004829          231 EMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFA  310 (728)
Q Consensus       231 ~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  310 (728)
                      ..+..| +++.|.+..+..         .     ....|..+|......|+++-|+.+|.++-.                
T Consensus        14 LAL~lg-~l~~A~e~a~~l---------~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------------   62 (177)
T 3mkq_B           14 LALEYG-NLDAALDEAKKL---------N-----DSITWERLIQEALAQGNASLAEMIYQTQHS----------------   62 (177)
T ss_dssp             HHHHTT-CHHHHHHHHHHH---------C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------
T ss_pred             HHHhcC-CHHHHHHHHHHh---------C-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------
Confidence            445665 888888886543         0     133588899999999999999999998664                


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004829          311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA  377 (728)
Q Consensus       311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  377 (728)
                       +-.+..+|...|+.+.-...-+.+...       .+      +.....+++..|++++++++|.+.
T Consensus        63 -~~~L~~Ly~~tg~~e~L~kla~iA~~~-------g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           63 -FDKLSFLYLVTGDVNKLSKMQNIAQTR-------ED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             -HHHHHHHHHHHTCHHHHHHHHHHHHHT-------TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHhCCHHHHHHHHHHHHHC-------cc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence             334555666677775544333332211       01      122234566788888888877554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.83  E-value=2.4  Score=37.53  Aligned_cols=102  Identities=9%  Similarity=0.007  Sum_probs=65.1

Q ss_pred             HHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 004829          274 AIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGET  353 (728)
Q Consensus       274 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  353 (728)
                      ......|+++.|.+..+..-.              -..|..||......|+++-|+.+|.++-..               
T Consensus        13 ~LAL~lg~l~~A~e~a~~l~~--------------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------------   63 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKLND--------------SITWERLIQEALAQGNASLAEMIYQTQHSF---------------   63 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHHCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------------
T ss_pred             HHHHhcCCHHHHHHHHHHhCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------------
Confidence            345677999999888765311              124899999999999999999999876443               


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          354 CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVL  418 (728)
Q Consensus       354 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~  418 (728)
                       ..+..+|...|+.+.-..    ..++....++         ++....+++..|+++++++.|.+
T Consensus        64 -~~L~~Ly~~tg~~e~L~k----la~iA~~~g~---------~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           64 -DKLSFLYLVTGDVNKLSK----MQNIAQTRED---------FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             -HHHHHHHHHHTCHHHHHH----HHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             -HHHHHHHHHhCCHHHHHH----HHHHHHHCcc---------HHHHHHHHHHcCCHHHHHHHHHH
Confidence             123334556676654332    3333332221         34445567778888888877654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.69  E-value=1.1  Score=51.17  Aligned_cols=104  Identities=13%  Similarity=0.085  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 004829          600 FGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT  679 (728)
Q Consensus       600 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~  679 (728)
                      ....|+.+-..|.+.|+.++|..+|.+.......-.   .|+ ..+|..|...|.+.|+.++|.++|++..+.      .
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------G  195 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA------G  195 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------T
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------C
Confidence            346788899999999999999999988765433222   344 348899999999999999999999988762      1


Q ss_pred             CChHHHHHHHHHHHHHHHhCCh-hHHHHHHHHHHHhh
Q 004829          680 ANPDVEDEKRRLAELLKEAGRV-RNRKSRSLVTFLDS  715 (728)
Q Consensus       680 ~~p~~~~~~~~La~~~~~~g~~-~~A~~~~l~~ll~~  715 (728)
                      -.|+ ...|..|-..+.+.|+. ++|. +.++.+.+.
T Consensus       196 ~~PD-vvTYntLI~glcK~G~~~e~A~-~Ll~EM~~k  230 (1134)
T 3spa_A          196 LTPD-LLSYAAALQCMGRQDQDAGTIE-RCLEQMSQE  230 (1134)
T ss_dssp             CCCC-HHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHH
T ss_pred             CCCc-HHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHc
Confidence            3354 45677777889999986 5677 788877654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.20  E-value=1.3  Score=50.62  Aligned_cols=104  Identities=8%  Similarity=-0.027  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 004829          390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD--VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK  467 (728)
Q Consensus       390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  467 (728)
                      .....+++.+-..|++.|+.++|..+|........    ...  ...+|+.|-..|.+.|++++|.++|++..+.     
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~----kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-----  194 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ----KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-----  194 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHH----HHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh----cCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence            34555677777788888888888877765432100    000  3456777777788888888888887777553     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 004829          468 GENHPAVASVFVRLADLYHKIGKL-RDSKSYCENALKI  504 (728)
Q Consensus       468 ~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~  504 (728)
                       +-.| ...+|..+-.++.+.|+. ++|..++++....
T Consensus       195 -G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          195 -GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             -TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             -CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence             2233 345566666677777764 5677777777665

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=90.30  E-value=7.8  Score=36.02  Aligned_cols=55  Identities=11%  Similarity=0.195  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 004829          450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-IGKLRDSKSYCENALKI  504 (728)
Q Consensus       450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  504 (728)
                      +.|...|+.|+++....+.+.||-......+.+..|+. +++.++|....+++.+-
T Consensus       147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~  202 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD  202 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            57888999999999888888899888888888877776 79999999888877664

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=90.05  E-value=11  Score=34.51  Aligned_cols=177  Identities=11%  Similarity=0.006  Sum_probs=103.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHH----HHcCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCC
Q 004829          480 RLADLYHKIGKLRDSKSYCENALK----IYGKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKTPGQ  554 (728)
Q Consensus       480 ~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~  554 (728)
                      .+|.+....++|++...+.+++..    .....        ...-.+.|..+|-. .|....+...+....+-   ..+.
T Consensus        11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eL--------t~EERnLLSvAYKNvig~rR~swRiissiEqk---ek~~   79 (227)
T 2o8p_A           11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEF--------DDEERHLLTLCIKHKISDYRTMTSQVLQEQTK---QLNN   79 (227)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCSC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCC--------CHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH---HcCC
Confidence            678889999999999999999988    42221        11222333333322 23333344433332211   1111


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHH
Q 004829          555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACV-----QRYTINEAADLFEEART  629 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~  629 (728)
                      ..     ...+..-|.. .=-.+-...+...+.+.....-+........+-..|..|.     ..|+.+.|...|+.|.+
T Consensus        80 ~~-----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~  153 (227)
T 2o8p_A           80 DE-----LVKICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFT  153 (227)
T ss_dssp             HH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHH
Confidence            10     0111111211 1112334456666666665543322212222233344433     35678999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 004829          630 ILEKEYGPYHHDTLGVYSNLAGTYD-AMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~al~~~  673 (728)
                      +....+.|.||-......+.+..|+ -+++.++|..+.++|+.+.
T Consensus       154 iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~  198 (227)
T 2o8p_A          154 LLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  198 (227)
T ss_dssp             HHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            9998888889988887777776655 5899999999999998754

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=89.27  E-value=18  Score=35.66  Aligned_cols=243  Identities=14%  Similarity=0.071  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChh
Q 004829          352 ETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELD  431 (728)
Q Consensus       352 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  431 (728)
                      ..+..++.=|.++++|++|++++.......                      ...|++.-|.++....++.+...+...+
T Consensus        36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~l----------------------l~~~Q~~sg~DL~~llvevy~~~~~~~~   93 (336)
T 3lpz_A           36 QETRLVAARYSKQGNWAAAVDILASVSQTL----------------------LRSGQGGSGGDLAVLLVDTFRQAGQRVD   93 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------HHTTCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHH----------------------HHCCCcchHHHHHHHHHHHHHHcCCCCC
Confidence            445556666777778877777665554433                      3344444444444444444433333322


Q ss_pred             HHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC
Q 004829          432 VASIDCSIGDAYLSLARF-DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH  510 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  510 (728)
                      . .....+..++.....- ..=..+.++++....+. |.........+..+|..|+..+++.+|..+|--          
T Consensus        94 ~-~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il----------  161 (336)
T 3lpz_A           94 G-ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL----------  161 (336)
T ss_dssp             H-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT----------
T ss_pred             H-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh----------
Confidence            2 2333444444333321 12244566666665552 333333456677899999999999998888731          


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          511 GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR  590 (728)
Q Consensus       511 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  590 (728)
                      +.+.  .+..+..+-.-+...+..                     .............|+..++...|...+....+.+.
T Consensus       162 g~~~--s~~~~a~mL~ew~~~~~~---------------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~  218 (336)
T 3lpz_A          162 GTKE--SPEVLARMEYEWYKQDES---------------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTSALV  218 (336)
T ss_dssp             SCTT--HHHHHHHHHHHHHHTSCG---------------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCc--hHHHHHHHHHHHHHhcCC---------------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            1111  112221111111222211                     11111222334457788999999998887776653


Q ss_pred             HhCCC-----------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004829          591 TSGEK-----------------KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY  653 (728)
Q Consensus       591 ~~~~~-----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~  653 (728)
                      .....                 ..+.  .-+..+-..-++.+..    ..|....+.+......+.+.....+..+|..|
T Consensus       219 ~~~p~L~~q~~~~~~~~~~~~p~~PL--LNFl~lLllt~q~~~~----~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~Y  292 (336)
T 3lpz_A          219 EDNKGLTVQNIGSQSAELRIFPSLPL--LNFISMLLLSVQKGSP----DLFRQLKSKYEANLNELNGIWDTALELIAEMY  292 (336)
T ss_dssp             HHCTTSCCEESCC--CCCEECTTCHH--HHHHHHHHHHHHSCCH----HHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHH
T ss_pred             hcCCCccccccccCCcccccCCCCch--HHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence            32111                 1221  1223333344455543    45555555544443333226677788888888


Q ss_pred             HHcC
Q 004829          654 DAMG  657 (728)
Q Consensus       654 ~~~g  657 (728)
                      +...
T Consensus       293 Fgi~  296 (336)
T 3lpz_A          293 FGIQ  296 (336)
T ss_dssp             HCCC
T ss_pred             cCCC
Confidence            8664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.24  E-value=7.2  Score=46.39  Aligned_cols=130  Identities=10%  Similarity=-0.003  Sum_probs=85.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----------
Q 004829          481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGK----------  550 (728)
Q Consensus       481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------  550 (728)
                      +...+...+.++-+..+.    .....      .+   ...+.+|.++...|++++|..+|+++-.....          
T Consensus       818 l~~~l~~~~~~~~~~~l~----~~~~~------~~---~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~  884 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLI----GWLNS------DP---IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE  884 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHH----HHSCC------CH---HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHH
T ss_pred             HHHHHHHhhhHHHHHHHh----hhccC------Cc---HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcc
Confidence            444555666666554422    23222      22   23477999999999999999999886321111          


Q ss_pred             ------CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829          551 ------TPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLF  624 (728)
Q Consensus       551 ------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  624 (728)
                            ...........|..+..++...+.++.+++..+.|++..   ...........+.++=..+...|+|++|...+
T Consensus       885 ~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~---~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL  961 (1139)
T 4fhn_B          885 FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK---ETDDEDLSIAITHETLKTACAAGKFDAAHVAL  961 (1139)
T ss_dssp             HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred             cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence                  111122344567788889999999999999999998752   22222223446777888899999999998776


Q ss_pred             HH
Q 004829          625 EE  626 (728)
Q Consensus       625 ~~  626 (728)
                      ..
T Consensus       962 ~~  963 (1139)
T 4fhn_B          962 MV  963 (1139)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=89.07  E-value=11  Score=32.77  Aligned_cols=175  Identities=13%  Similarity=0.020  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--H--------H
Q 004829          521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK--F--------R  590 (728)
Q Consensus       521 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~--------~  590 (728)
                      -..++.+++-.|+|..|+-++..       .     ..+.+.+.-+.||....++..|+..++..++-  -        -
T Consensus        36 ~lL~~I~LyyngEY~R~Lf~L~~-------l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~  103 (242)
T 3kae_A           36 RMLMSIVLYLNGEYTRALFHLHK-------L-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI  103 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT-------C-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred             HhhhhhhhhhcchHhHHHHHHHh-------c-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence            34567778888998877766542       1     11445566788999999999999999988731  1        0


Q ss_pred             HhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-------------HcC
Q 004829          591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD-------------AMG  657 (728)
Q Consensus       591 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~-------------~~g  657 (728)
                      +..-.++......+..+|.++.+.|+.++|+.+|......        .+-...+- +|  +|.             ..|
T Consensus       104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~--------~~lf~~vE-nl--iyeN~vp~~~d~~~i~~~~  172 (242)
T 3kae_A          104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK--------SFLFSPVE-NL--LLENKVPQKRDKENVRQTG  172 (242)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCHHHHH-HH--HHTTCCCCCC---------
T ss_pred             ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC--------ccccchHH-HH--HhhcCCCcccchHHHHhhh
Confidence            0100112223456788899999999999999999988765        33222111 11  110             111


Q ss_pred             ChHHHHHHHHHHHHHHHHH-------cCCCChHHHH-HHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829          658 RIDDAIEILEYVVGMREEK-------LGTANPDVED-EKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       658 ~~~~A~~~~~~al~~~~~~-------~~~~~p~~~~-~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      +-.--.+++.....+.+.+       ....-|.... ....-|..|..+|-.++.. ..+..+...+|..
T Consensus       173 ~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~-~lf~~lR~kDP~F  241 (242)
T 3kae_A          173 RRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSK-ACFELVRRKDPMF  241 (242)
T ss_dssp             --CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTTT
T ss_pred             hccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHH-HHHHHHHhcCCCc
Confidence            1111123333333332211       1122343322 2235577889999999999 9999999888865

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=88.89  E-value=15  Score=34.42  Aligned_cols=183  Identities=10%  Similarity=0.015  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCC
Q 004829          477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKTPGQQ  555 (728)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  555 (728)
                      -+..+|.+....++|++...+.+++.......        ...-.+.|..+|-. .|....+...+....+... ..+..
T Consensus        33 ~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eL--------t~EERNLLSvAYKNvIgarR~swRiissieqkee-~~g~~  103 (261)
T 3ubw_A           33 DLVYQAKLAEQAERYDEMVESMKKVAGMDVEL--------TVEERNLLSVAYKNVIGARRASWRIISSIEQKEE-NKGGE  103 (261)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhh-ccccH
Confidence            45667888889999999999999887653221        11222333333321 2333344444332222211 11111


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CC-CCcHHHHHHHHHHHHHHHHc-----C-----CHHHHHH
Q 004829          556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS--GE-KKSALFGIALNQMGLACVQR-----Y-----TINEAAD  622 (728)
Q Consensus       556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~-~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~  622 (728)
                      ..     ..+..-|.. .=-.+-...+...+.+....  .. .........+-..|..|.-.     |     -.+.|..
T Consensus       104 ~~-----~~~i~~yr~-kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~  177 (261)
T 3ubw_A          104 DK-----LKMIREYRQ-MVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLV  177 (261)
T ss_dssp             HH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHH
Confidence            00     011111110 00112233444555544332  11 11111112222334444322     2     2467889


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHH
Q 004829          623 LFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMRE  674 (728)
Q Consensus       623 ~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~~  674 (728)
                      .|++|.++....+.|.||-......+.+..|+. +++.++|..+.++|..-.-
T Consensus       178 aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai  230 (261)
T 3ubw_A          178 AYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI  230 (261)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            999999999888999999998888888877665 7999999999888876543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.67  E-value=6.5  Score=46.73  Aligned_cols=102  Identities=10%  Similarity=-0.000  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------HhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004829          396 RRLMGLICDSKGDYEAALEHYVLASMSM-----------------AANGHELDVASIDCSIGDAYLSLARFDEAIFSYHK  458 (728)
Q Consensus       396 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  458 (728)
                      .+.+|.++...|++++|..+|.++..-.                 ............|..+..++...+.++.++++.+.
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l  924 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL  924 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4789999999999999999998763111                 11111222345678888899999999999999999


Q ss_pred             HHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          459 ALTAFKSAKGENHPA-VASVFVRLADLYHKIGKLRDSKSYCENA  501 (728)
Q Consensus       459 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a  501 (728)
                      |++..    +.+.+. ....+.++-..+...|+|++|...+...
T Consensus       925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            98762    223443 3346778888899999999998777543

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=88.65  E-value=16  Score=34.18  Aligned_cols=184  Identities=12%  Similarity=0.064  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCC
Q 004829          477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKTPGQQ  555 (728)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  555 (728)
                      -+..+|.+....++|++...+.+++.......        ...-.+.|..+|-. .|....+...+....+..... +..
T Consensus         6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eL--------t~EERnLLSvAYKNvig~rR~swRiissieqke~~~-~~~   76 (248)
T 3uzd_A            6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPL--------SNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSAD-GNE   76 (248)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhcc-CCH
Confidence            35667888899999999999999887753221        11223334444422 233344444443322221111 222


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCc--HHHHHHHHHHHHHHHHc-----C-----CHHHH
Q 004829          556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG---EKKS--ALFGIALNQMGLACVQR-----Y-----TINEA  620 (728)
Q Consensus       556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~--~~~~~~~~~la~~~~~~-----g-----~~~~A  620 (728)
                      .....     ..-|. ..=-.+-...+...+.+.....   ....  ......+-..|..|.-.     |     -.+.|
T Consensus        77 ~~~~~-----i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a  150 (248)
T 3uzd_A           77 KKIEM-----VRAYR-EKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESS  150 (248)
T ss_dssp             C-HHH-----HHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHH-----HHHHH-HHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence            11111     11111 0001122334445555443321   1111  12222233334444322     2     24678


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 004829          621 ADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMREE  675 (728)
Q Consensus       621 ~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~~~  675 (728)
                      ...|++|..+....+.|.||-......+.+..|+. +++.++|..+.++|+.-.-.
T Consensus       151 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~  206 (248)
T 3uzd_A          151 EKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIA  206 (248)
T ss_dssp             HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            89999999999988999999998888888877665 89999999998888765433

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.26  E-value=40  Score=38.41  Aligned_cols=175  Identities=9%  Similarity=-0.002  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          431 DVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGE--NHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       431 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      ....+++.+|.++...+  .+++.++...+.-.....|.  .......+...||.++.-.++ +++...+...+.-.   
T Consensus       411 ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd---  484 (963)
T 4ady_A          411 IKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND---  484 (963)
T ss_dssp             HHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC---
Confidence            35666777777776555  46777776665531100000  011223455577777766655 45566666555421   


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                          +......+-..+|.++.-.|+-+....++..+.+    .   ......-...+|..+...|+.+.+....+.....
T Consensus       485 ----~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e----~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~  553 (963)
T 4ady_A          485 ----SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE----T---QHGNITRGLAVGLALINYGRQELADDLITKMLAS  553 (963)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH----C---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC
T ss_pred             ----CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc----c---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC
Confidence                1111234566788888888887665555554442    1   1111222234455555677777665554443221


Q ss_pred             HHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEAR  628 (728)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  628 (728)
                            .++.....+...+|.+|...|+...-..++..+.
T Consensus       554 ------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~  587 (963)
T 4ady_A          554 ------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV  587 (963)
T ss_dssp             ------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             ------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence                  1122223345567788888888654444555544

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=88.12  E-value=11  Score=36.88  Aligned_cols=86  Identities=20%  Similarity=0.138  Sum_probs=62.0

Q ss_pred             CCChhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          427 GHELDVASIDCSIGDAYLSLA--RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       427 ~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      +.-.....++.+||.+-...-  ....++.+|.+++...+..++..|   ...|..+|..+++.+++.+|+..+-.+-..
T Consensus       249 GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~V  325 (472)
T 3re2_A          249 GHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYV  325 (472)
T ss_dssp             TTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence            333444556666766654332  222389999999999999886555   345778899999999999999999999998


Q ss_pred             HcCCCCCCCcH
Q 004829          505 YGKPNHGIPSE  515 (728)
Q Consensus       505 ~~~~~~~~~~~  515 (728)
                      .+......++.
T Consensus       326 i~~YNY~reDe  336 (472)
T 3re2_A          326 AGKYNYSKDDE  336 (472)
T ss_dssp             HTTSCCCGGGH
T ss_pred             HHHcCCCccHH
Confidence            87765443333

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=88.04  E-value=18  Score=34.13  Aligned_cols=183  Identities=11%  Similarity=0.076  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHH--cCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCC
Q 004829          476 SVFVRLADLYHKIGKLRDSKSYCENALKIY--GKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKTP  552 (728)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~  552 (728)
                      .-+..+|.+....++|++...+++++....  ...     .   ..-.+.|..+|-. .|....+...+....+-.. ..
T Consensus         9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eL-----t---~EERnLLSvaYKNvig~rR~swRiissieqke~-~k   79 (260)
T 1o9d_A            9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEEL-----T---VEERNLLSVAYKNVIGARRASWRIISSIEQKEE-SR   79 (260)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCC-----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCC-----C---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh-cc
Confidence            345678888999999999999999988863  221     1   1122223333321 2333344444433222111 11


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHHHHHHc-----C-----CHHH
Q 004829          553 GQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG---EKKSALFGIALNQMGLACVQR-----Y-----TINE  619 (728)
Q Consensus       553 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~-----g-----~~~~  619 (728)
                      +....     ..+..-|. ..=-.+-..++...+.+.....   ..........+-..|..|...     |     -.+.
T Consensus        80 ~~~~~-----~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~  153 (260)
T 1o9d_A           80 GNEEH-----VNSIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAES  153 (260)
T ss_dssp             TCHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             CcHHH-----HHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHH
Confidence            11100     11111111 1111223344455555544321   111111122222334444322     2     2457


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004829          620 AADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       620 A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~  673 (728)
                      |...|++|..+....+.|.||-......+.+..|+. +++.++|..+.++++.-.
T Consensus       154 a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  208 (260)
T 1o9d_A          154 TLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  208 (260)
T ss_dssp             HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            889999999999888999999998888888877665 799999998888776543

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=87.86  E-value=17  Score=33.71  Aligned_cols=59  Identities=19%  Similarity=0.174  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 004829          617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMREE  675 (728)
Q Consensus       617 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~~~  675 (728)
                      .+.|...|++|.++....+.|.||-......+.+..|+. +++.++|..+.++++.-.-.
T Consensus       146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~  205 (234)
T 2br9_A          146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA  205 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            467889999999999888999999998888888877665 89999999998888765443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=87.54  E-value=1.6  Score=46.22  Aligned_cols=63  Identities=16%  Similarity=0.092  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004829          601 GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       601 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                      ..++..||.+......+..|..+|.+|..+        .|.....+..||.+....|+.-+|+-+|-+++.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            357788999999999999999999999999        999999999999999999999999999988865

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=86.32  E-value=21  Score=33.10  Aligned_cols=183  Identities=13%  Similarity=0.086  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCC
Q 004829          477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKTPGQQ  555 (728)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  555 (728)
                      -+..+|.+....++|++...+.+++.......        ...-.+.|..+|-. .|....+...+....+..... +..
T Consensus        10 ~~v~~AklaeqaeRyddM~~~mk~v~~~~~eL--------s~EERnLLSvaYKNvig~rR~swRiissieqke~~~-~~~   80 (236)
T 3iqu_A           10 SLIQKAKLAEQAERYEDMAAFMKGAVEKGEEL--------SCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEE-GSE   80 (236)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TCC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhc-CCH
Confidence            45677888999999999999999988763222        12223334444422 344444555554333222111 211


Q ss_pred             C--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHHHHHH-----cCC-----HHHH
Q 004829          556 S--TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG---EKKSALFGIALNQMGLACVQ-----RYT-----INEA  620 (728)
Q Consensus       556 ~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~-----~g~-----~~~A  620 (728)
                      .  ....-|.  ..+      -.+-...+...+.+.....   ...+......+-..|..|.-     .|+     .+.|
T Consensus        81 ~~~~~i~~yr--~ki------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a  152 (236)
T 3iqu_A           81 EKGPEVREYR--EKV------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSA  152 (236)
T ss_dssp             CCCSHHHHHH--HHH------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHH
T ss_pred             HHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence            1  1111111  000      1122334444454443321   11111112222233444432     333     5678


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHH
Q 004829          621 ADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYD-AMGRIDDAIEILEYVVGMREEK  676 (728)
Q Consensus       621 ~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~al~~~~~~  676 (728)
                      ...|++|.++....+.|.||-......+.+..|+ -+++.++|..+.++|..-.-..
T Consensus       153 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~e  209 (236)
T 3iqu_A          153 RSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMAD  209 (236)
T ss_dssp             HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            8999999999998899999999888888887766 5799999999988887654333

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=86.25  E-value=14  Score=36.77  Aligned_cols=91  Identities=14%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCC
Q 004829          431 DVASIDCSIGDAYLSLARF--DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP  508 (728)
Q Consensus       431 ~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  508 (728)
                      ....++.+||.+-...--.  ..++.+|.+++...+..++..|   ..-|..+|-.|++.+++.+|+..+-.+-...+..
T Consensus       275 rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~Y  351 (550)
T 3u84_A          275 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDY  351 (550)
T ss_dssp             TCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             hCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHHc
Confidence            3344555666554432111  2488999999999998886555   3457788999999999999999999999998876


Q ss_pred             CCCCCcHHHHHHHHHH
Q 004829          509 NHGIPSEEIASGLIDI  524 (728)
Q Consensus       509 ~~~~~~~~~~~~~~~l  524 (728)
                      ....++.++..-+..+
T Consensus       352 NY~reDeEIYKEf~eI  367 (550)
T 3u84_A          352 NYCREDEEIYKEFFEV  367 (550)
T ss_dssp             CCCGGGHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHH
Confidence            6444444443333333

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.80  E-value=33  Score=34.94  Aligned_cols=131  Identities=8%  Similarity=0.030  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----c-------CCChhHHHHHHHH
Q 004829          371 EKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAA----N-------GHELDVASIDCSI  439 (728)
Q Consensus       371 ~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~-------~~~~~~~~~~~~l  439 (728)
                      +++|+..+.-+.....+  ...   ...+..+.....+.++|+++++........    .       ........+...+
T Consensus        59 ~~ly~~fi~~f~~kin~--L~l---v~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i  133 (393)
T 4b4t_O           59 LRLYDNFVSKFYDKINQ--LSV---VKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI  133 (393)
T ss_dssp             HHHHHHHHHHHHHHSCS--HHH---HHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCH--HHH---HHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence            44555555555444332  111   112334556678899999998765322111    0       1113345677788


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829          440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (728)
                      +..|...|+.++|..+++++-.......+.+.......+...+..|...+++..+....-..+....
T Consensus       134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~  200 (393)
T 4b4t_O          134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE  200 (393)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence            9999999999999999999988877764444556677777788888899999988888777777654

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=84.85  E-value=22  Score=35.62  Aligned_cols=86  Identities=15%  Similarity=0.108  Sum_probs=62.9

Q ss_pred             CChhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          428 HELDVASIDCSIGDAYLSLA--RFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY  505 (728)
Q Consensus       428 ~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  505 (728)
                      .-.....++.+||.+-...-  ....++.+|++|+...+..+...+   ...|..+|-.+++.++|.+|+.++-.+-...
T Consensus       257 hl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi  333 (489)
T 4gq4_A          257 HLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVI  333 (489)
T ss_dssp             TTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             chhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhh
Confidence            33444556666666654322  223478899999999999886655   4567888999999999999999999999998


Q ss_pred             cCCCCCCCcHH
Q 004829          506 GKPNHGIPSEE  516 (728)
Q Consensus       506 ~~~~~~~~~~~  516 (728)
                      ........+..
T Consensus       334 ~~YnY~reDeE  344 (489)
T 4gq4_A          334 QDYNYCREDEE  344 (489)
T ss_dssp             TTSCCCTTCHH
T ss_pred             hhcccccchHH
Confidence            87665544443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=84.82  E-value=1.9  Score=45.54  Aligned_cols=63  Identities=17%  Similarity=0.136  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          434 SIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       434 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      ..+..||.+......+..|..+|.+|+.+        .|.....++.||.+....|+.-+|+-+|-+++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            46778999999999999999999999999        9999999999999999999999999999998865

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=84.28  E-value=28  Score=32.79  Aligned_cols=182  Identities=10%  Similarity=0.105  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHH---cCCCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcC
Q 004829          476 SVFVRLADLYHKIGKLRDSKSYCENALKIY---GKPNHGIPSEEIASGLIDIAAIYQS-MNELEQAVKLLNKALKIYGKT  551 (728)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~  551 (728)
                      .-+..+|.+....++|++...+.+++....   ...        ...-.+.|..+|-. .|....+...+....+-.. .
T Consensus        29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eL--------t~EERnLLSvAyKNvIg~rR~swRiissieqke~-~   99 (260)
T 2npm_A           29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEEL--------TVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEH-S   99 (260)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCC--------CHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhh-c
Confidence            445677888889999999999999988852   111        11222333333322 2333334443332221111 1


Q ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHHHHHHc----------CCHH
Q 004829          552 PGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG---EKKSALFGIALNQMGLACVQR----------YTIN  618 (728)
Q Consensus       552 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~----------g~~~  618 (728)
                      .+....     ..+..-| +..=-.+-...+...+.+.....   ...+......+-..|..|...          .-.+
T Consensus       100 k~~~~~-----~~~i~~y-r~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e  173 (260)
T 2npm_A          100 RNAEDA-----SKMCGKY-RSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAE  173 (260)
T ss_dssp             TTCHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cCcHHH-----HHHHHHH-HHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHH
Confidence            111100     0111111 11111222334445555444321   111111122222234333321          1246


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004829          619 EAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       619 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~  673 (728)
                      .|...|++|.++. ..+.+.||-......+.+..|+. +++.++|..+.++|..-.
T Consensus       174 ~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  228 (260)
T 2npm_A          174 DALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA  228 (260)
T ss_dssp             HHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            7889999999999 77899999998888888877765 899999999988887644

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=84.18  E-value=6  Score=30.22  Aligned_cols=48  Identities=17%  Similarity=0.111  Sum_probs=36.8

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829          221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCL  269 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~  269 (728)
                      .+..+...|...-..| +|++|+.+|..++..+-......+++..-..+
T Consensus        15 ~A~~lv~~Ave~D~~g-~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~l   62 (86)
T 4a5x_A           15 AAATVLKRAVELDSES-RYPQALVCYQEGIDLLLQVLKGTKDNTKRCNL   62 (86)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            3556778888888887 99999999999999987776666666543333

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=83.39  E-value=12  Score=33.61  Aligned_cols=115  Identities=8%  Similarity=-0.007  Sum_probs=78.2

Q ss_pred             CCCC-ChHHHHHHHHHHHHHcCCCH-H-HHH-HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 004829          216 LGNP-ALGPFLLKQTREMISSGENP-Q-KAL-ELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLER  291 (728)
Q Consensus       216 ~~~p-~~~~~l~~~a~~~~~~g~~~-~-~A~-~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  291 (728)
                      .+|| +....+.......+-.|+.. + .-+ .++++++..+.....=.+++....+|...+..+ ..+...++..+|..
T Consensus        26 ~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~  104 (202)
T 3esl_A           26 MDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKY  104 (202)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHH
Confidence            4555 34444555555555555221 2 233 688888888776655556677777777777765 23446688888887


Q ss_pred             hhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829          292 SVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI  338 (728)
Q Consensus       292 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  338 (728)
                      +...   ..|...+..    |...|..+...|++.+|..+|+.+++.
T Consensus       105 L~~~---~IG~~~Alf----Ye~wA~~lE~~g~~~~A~~Vy~~GI~~  144 (202)
T 3esl_A          105 MFNK---GIGTKLSLF----YEEFSKLLENAQFFLEAKVLLELGAEN  144 (202)
T ss_dssp             HHHH---TSSTTBHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHC---CCcHHHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            6543   345555543    889999999999999999999999886

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.96  E-value=43  Score=34.01  Aligned_cols=134  Identities=13%  Similarity=-0.009  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcC--------CchhHhHHHHHHH
Q 004829          243 LELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDG--------QDHALAKFAGCMQ  314 (728)
Q Consensus       243 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~~  314 (728)
                      +.+|+..+.-+..-.+   ....+.   .+..+.....+.++|++++++..........        ..+....+.+...
T Consensus        59 ~~ly~~fi~~f~~kin---~L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~  132 (393)
T 4b4t_O           59 LRLYDNFVSKFYDKIN---QLSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSE  132 (393)
T ss_dssp             HHHHHHHHHHHHHHSC---SHHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC---HHHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHH
Confidence            4566666665554321   111221   1344556678899999999876554321111        1122334556788


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          315 LGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHR  382 (728)
Q Consensus       315 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  382 (728)
                      ++..|...|+.+.|..+++++-......-+.+.......+...+..|...++|..+...+-..+....
T Consensus       133 i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~  200 (393)
T 4b4t_O          133 IARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE  200 (393)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence            99999999999999999999987766543333334555666677788888999887776666665443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=82.38  E-value=39  Score=33.00  Aligned_cols=188  Identities=12%  Similarity=-0.029  Sum_probs=107.3

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchh
Q 004829          226 LKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA  305 (728)
Q Consensus       226 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  305 (728)
                      ...-...+..| +|=+|.+.|+-....+.+.   ....+....++.-+..+.+.|++..|..+..-.++.......+...
T Consensus        17 l~rl~~~I~~G-~yYEAhQ~~Rtl~~Ry~~~---~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~   92 (312)
T 2wpv_A           17 LQRFENKIKAG-DYYEAHQTLRTIANRYVRS---KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDD   92 (312)
T ss_dssp             HHHHHHHHHHT-CHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSH
T ss_pred             HHHHHHHhhcc-ChHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH
Confidence            33444555665 7777777777666554442   2334555666667777788888888877766666655433222221


Q ss_pred             HhHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-------
Q 004829          306 LAKFAGCMQLGDTYAMLGQIE-NSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMA-------  377 (728)
Q Consensus       306 ~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------  377 (728)
                      .    ....+..++.....-+ .=..+..+++....+. ++..-.....+..+|..|...+++.+|..+|-..       
T Consensus        93 ~----~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~  167 (312)
T 2wpv_A           93 I----SVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIK  167 (312)
T ss_dssp             H----HHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHH
T ss_pred             H----HHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHH
Confidence            1    2445555554433211 2356677777776553 2222234567888999999999999998877321       


Q ss_pred             -----HHHHHHcCCCCcHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          378 -----LDIHRENTSPASIEEAADRR-LMGLICDSKGDYEAALEHYVLASMSM  423 (728)
Q Consensus       378 -----l~~~~~~~~~~~~~~a~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~  423 (728)
                           .+....... ........+. .....|...|+...|...+..-....
T Consensus       168 ~a~~l~~w~~~~~~-~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~  218 (312)
T 2wpv_A          168 YVDLLWDWLCQVDD-IEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF  218 (312)
T ss_dssp             HHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence                 112222100 1122222222 23345667899999988887665444

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=81.74  E-value=35  Score=32.05  Aligned_cols=55  Identities=11%  Similarity=0.195  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 004829          450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK-IGKLRDSKSYCENALKI  504 (728)
Q Consensus       450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  504 (728)
                      +.|...|++|.++....+.+.+|-......+.+..|+. +++.++|....++|.+-
T Consensus       173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~  228 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD  228 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            67889999999999888888899888888888887776 69999998888877664

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=80.82  E-value=27  Score=30.27  Aligned_cols=97  Identities=16%  Similarity=0.203  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HHHH------
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALD--IHRE------  383 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~------  383 (728)
                      -+.++.+++..|.|..|+-++.             .-+...+.+.-+.||....+|..|+..++..+.  +.++      
T Consensus        36 ~lL~~I~LyyngEY~R~Lf~L~-------------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~  102 (242)
T 3kae_A           36 RMLMSIVLYLNGEYTRALFHLH-------------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR  102 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH-------------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred             HhhhhhhhhhcchHhHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence            4567788888999998877654             234556677788899999999999999999882  1111      


Q ss_pred             --cCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          384 --NTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASM  421 (728)
Q Consensus       384 --~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~  421 (728)
                        ..-.+....--.+..+|.++.+.|+.++|+.+|.....
T Consensus       103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~  142 (242)
T 3kae_A          103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG  142 (242)
T ss_dssp             HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence              00001112233577899999999999999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	728
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-20
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-18
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-18
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-09
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-07
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	5e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	0.001
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 90.4 bits (222), Expect = 4e-20
 Identities = 46/353 (13%), Positives = 107/353 (30%), Gaps = 15/353 (4%)

Query: 269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENS 328
             + A +  + G  +EA  + + ++E           +A       LG+     G++  S
Sbjct: 15  NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA----TSVLGEVLHCKGELTRS 70

Query: 329 ILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPA 388
           +       ++ RQ   +  H    +    +E          A +  + A  +  E     
Sbjct: 71  LALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 128

Query: 389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR 448
                   R+   +  +    + A      + + + ++            +    L+   
Sbjct: 129 LPMHEFLVRIRAQLLWAWARLDEAEASA-RSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 187

Query: 449 FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508
            D A    ++      +    +   +++        +   G    + ++  +  K     
Sbjct: 188 LDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 246

Query: 509 NHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVM 568
           NH +  +        IA     + E E A  +L +  +         S +      +  +
Sbjct: 247 NHFLQGQWRN-----IARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQL 300

Query: 569 YYMTGNYSDSYNTLKSAISKFRTSGEKKSAL-FGIALNQMGLACVQRYTINEA 620
           Y+  G  SD+   L  A+     +G     +  G A+ Q     +Q  T+ E 
Sbjct: 301 YWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEL 353

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 85.4 bits (209), Expect = 2e-18
 Identities = 51/359 (14%), Positives = 98/359 (27%), Gaps = 32/359 (8%)

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417
           A+  +     DEAE++ ++AL+                  ++G +   KG+   +L    
Sbjct: 19  AQVAINDGNPDEAERLAKLALEELPPGWFY---SRIVATSVLGEVLHCKGELTRSLALMQ 75

Query: 418 LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASV 477
                   +              +   +      A  +  KA         E  P    +
Sbjct: 76  QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 135

Query: 478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537
               A L     +L       E + +   +       ++    L  +     +  +L+ A
Sbjct: 136 VRIRAQLLWAWARLD----EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 191

Query: 538 VKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS 597
              LN+   + G        I+       + + MTG+ + + N L+        +     
Sbjct: 192 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH--- 248

Query: 598 ALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMG 657
                    +  A +       A  + EE              D       L   Y   G
Sbjct: 249 -FLQGQWRNIARAQILLGEFEPAEIVLEELNEN--ARSLRLMSDLNRNLLLLNQLYWQAG 305

Query: 658 RIDDAIEILEYVVGMRE-------------------EKLGTANPDVEDEKRRLAELLKE 697
           R  DA  +L   + +                      +L   N   E E+ R   +L+E
Sbjct: 306 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 364

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 80.0 bits (195), Expect = 1e-16
 Identities = 39/314 (12%), Positives = 100/314 (31%), Gaps = 16/314 (5%)

Query: 238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPV 297
           NP +A  LAK A++             +++   VL  +    G+   ++ +++++ ++  
Sbjct: 27  NPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 82

Query: 298 LEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYV 357
             D   +AL      +Q  +     G ++ +        ++  +   E         R  
Sbjct: 83  QHDVWHYALW---SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 139

Query: 358 AEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417
           A+      + DEAE   +  +++         ++      L+           A  +   
Sbjct: 140 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ--CLAMLIQCSLARGDLDNARSQLNR 197

Query: 418 LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASV 477
           L ++      H   +++ +      +        A                 N+  +   
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF----ANNHFLQGQ 253

Query: 478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQA 537
           +  +A     +G+   ++   E   +            ++   L+ +  +Y        A
Sbjct: 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLM---SDLNRNLLLLNQLYWQAGRKSDA 310

Query: 538 VKLLNKALKIYGKT 551
            ++L  ALK+  +T
Sbjct: 311 QRVLLDALKLANRT 324

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (210), Expect = 3e-18
 Identities = 51/440 (11%), Positives = 119/440 (27%), Gaps = 69/440 (15%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILC 331
           LA      G +  A     +     +     D+          L   +    +++ S   
Sbjct: 5   LAHREYQAGDFEAAERHCMQ-----LWRQEPDNTGVLL----LLSSIHFQCRRLDRSAHF 55

Query: 332 YTAGLEIQ------RQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENT 385
            T  ++           LG      G+    +           +                
Sbjct: 56  STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115

Query: 386 SPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHEL------DVASIDCSI 439
                 +A    L           +       L  +  A   +        + A    ++
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175

Query: 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE 499
           G  + +      AI  + KA+           P     ++ L ++  +      + +   
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAV--------TLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 500 NALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIA 559
            AL +             A    ++A +Y     ++ A+    +A+++       Q    
Sbjct: 228 RALSLS---------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-------QPHFP 271

Query: 560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINE 619
                +       G+ +++ +   +A+    T  +          N +     ++  I E
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL--------NNLANIKREQGNIEE 323

Query: 620 AADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT 679
           A  L+ +A  +          +    +SNLA      G++ +A+   +  + +       
Sbjct: 324 AVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI------- 368

Query: 680 ANPDVEDEKRRLAELLKEAG 699
            +P   D    +   LKE  
Sbjct: 369 -SPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 28/231 (12%)

Query: 481 LADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKL 540
           LA   ++ G    ++ +C    +    P++          L+ +++I+     L+++   
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQE--PDN-------TGVLLLLSSIHFQCRRLDRSAHF 55

Query: 541 LNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALF 600
              A+K         S +  +  + G +     +Y  +       I  +        A  
Sbjct: 56  STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115

Query: 601 -----------GIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNL 649
                       +  N               A    E       +      +    +SNL
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175

Query: 650 AGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR 700
              ++A G I  AI   E  V +        +P+  D    L  +LKEA  
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARI 218

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.3 bits (137), Expect = 1e-09
 Identities = 28/234 (11%), Positives = 65/234 (27%), Gaps = 6/234 (2%)

Query: 314 QLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKI 373
           Q    Y +  ++  +   +    + Q++     +   G T     +          A   
Sbjct: 42  QAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99

Query: 374 CQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVA 433
            + A+ I                 L  ++ +   DY  A++ Y LA    A +       
Sbjct: 100 LENAIQIFTHRGQF-RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158

Query: 434 SIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRD 493
                  D      ++ EA   Y K + +    +  +  ++   F++             
Sbjct: 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAATDAVA 217

Query: 494 SKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
           +    +        PN     E      +  A       +L +  K  +  +++
Sbjct: 218 AARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (120), Expect = 3e-07
 Identities = 36/241 (14%), Positives = 75/241 (31%), Gaps = 7/241 (2%)

Query: 369 EAEKICQMALDIHRENTSPASI--EEAADR-RLMGLICDSKGDYEAALEHYVLASMSMAA 425
            AEK    +    +  +   S   EEAAD       I   + +   A + ++ A+     
Sbjct: 10  RAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK 69

Query: 426 NGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLY 485
            G+E +  +        + S      A+ S   A+  F         A     +    L 
Sbjct: 70  AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG-EILE 128

Query: 486 HKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKAL 545
           + +     +    E A + Y +              I  A +     +  +A  + +K +
Sbjct: 129 NDLHDYAKAIDCYELAGEWYAQDQS---VALSNKCFIKCADLKALDGQYIEASDIYSKLI 185

Query: 546 KIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALN 605
           K        Q ++     + G+      +   +  TL+   S+     + + + F  +L 
Sbjct: 186 KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI 245

Query: 606 Q 606
            
Sbjct: 246 D 246

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 31/241 (12%), Positives = 70/241 (29%), Gaps = 11/241 (4%)

Query: 226 LKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEA 285
           +    E++   E   K    +   MK F    + K   E        A I+    + N A
Sbjct: 1   ISDPVELLKRAE---KKGVPSSGFMKLFSGSDSYKFE-EAADLCVQAATIYRLRKELNLA 56

Query: 286 IPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGE 345
                ++ +    + G +         ++    +   G   N++      ++I     G+
Sbjct: 57  GDSFLKAADYQ-KKAGNEDEAGNT--YVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-GQ 112

Query: 346 TDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS 405
                                + +A    ++A + + ++ S A   +   +     +   
Sbjct: 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK--CADLKAL 170

Query: 406 KGDYEAALEHYV-LASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFK 464
            G Y  A + Y  L   SM     +  +       G   L+      A  +  +  +   
Sbjct: 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230

Query: 465 S 465
           +
Sbjct: 231 N 231

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 29/265 (10%), Positives = 73/265 (27%), Gaps = 52/265 (19%)

Query: 283 NEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQV 342
            ++   L ++  +       D   +K        + +     ++          ++ +++
Sbjct: 3   LQSAQYLRQAEVLK-----ADMTDSKLG----PAEVWTSRQALQ----------DLYQKM 43

Query: 343 LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLI 402
           L  TD           E  + +  F       Q      +   +P   E  A   L   +
Sbjct: 44  L-VTDLEYALD--KKVEQDLWNHAFKNQITTLQ---GQAKNRANPNRSEVQA--NLSLFL 95

Query: 403 CDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTA 462
             + G Y   L+              +L        +G            +     + + 
Sbjct: 96  EAASGFYTQLLQEL------CTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS- 148

Query: 463 FKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLI 522
                           V L D+     +   ++SY  +A ++   P++G P         
Sbjct: 149 ---------YICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPY-------N 190

Query: 523 DIAAIYQSMNELEQAVKLLNKALKI 547
            +A +  S  +    +    +++ +
Sbjct: 191 QLAILASSKGDHLTTIFYYCRSIAV 215

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 14/142 (9%), Positives = 37/142 (26%), Gaps = 19/142 (13%)

Query: 446 LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIY 505
               + A   Y + L    +    +         +L  + +K            ++    
Sbjct: 92  SLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY- 149

Query: 506 GKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQM 565
                          L+ +  I +  N+  QA      A ++                Q+
Sbjct: 150 ----------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-------NGQPYNQL 192

Query: 566 GVMYYMTGNYSDSYNTLKSAIS 587
            ++    G++  +      +I+
Sbjct: 193 AILASSKGDHLTTIFYYCRSIA 214

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 46/309 (14%), Positives = 88/309 (28%), Gaps = 44/309 (14%)

Query: 400 GLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKA 459
           GL    +GD   A+  +       AA   +         +G       +   AI +  + 
Sbjct: 26  GLRRLQEGDLPNAVLLF------EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 79

Query: 460 LTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIAS 519
           L        E  P   +  + LA  +      R +     + L+      H +   E  +
Sbjct: 80  L--------ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 131

Query: 520 GLID------IAAIYQSMNELEQAVKLLNKALKIY------------GKTPGQQSTIAGI 561
           G         I     S +   +  +L   A+++             G            
Sbjct: 132 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 191

Query: 562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL---------FGIALNQMGLACV 612
                    +  N    +N L + ++    S E  +A          +  +   +G++C+
Sbjct: 192 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 251

Query: 613 QRYTINEAADLFEEARTILEKEYGPYHHD---TLGVYSNLAGTYDAMGRIDDAIEILEYV 669
                 EA + F EA  +  K  GP       +  ++S L      +G+ D         
Sbjct: 252 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 311

Query: 670 VGMREEKLG 678
           +       G
Sbjct: 312 LSTLLTMFG 320

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 39/325 (12%), Positives = 87/325 (26%), Gaps = 35/325 (10%)

Query: 272 LAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILC 331
                   G    A+ + E +V+         H  A       LG T A   Q   +I  
Sbjct: 25  EGLRRLQEGDLPNAVLLFEAAVQQ-----DPKHMEAWQ----YLGTTQAENEQELLAISA 75

Query: 332 YTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIE 391
               LE++                   +     +  D        A  +           
Sbjct: 76  LRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG 135

Query: 392 EAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDE 451
               +R++G +      +    E ++ A               + C +G  +     +D+
Sbjct: 136 LGPSKRILGSLLS-DSLFLEVKELFLAAVRLD----PTSIDPDVQCGLGVLFNLSGEYDK 190

Query: 452 AIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511
           A+  +  AL+   +     +   A+             +  ++ +    AL++       
Sbjct: 191 AVDCFTAALSVRPNDYLLWNKLGAT--------LANGNQSEEAVAAYRRALELQPG---- 238

Query: 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQ----MGV 567
                      ++     ++    +AV+   +AL +  K+ G +     +       + +
Sbjct: 239 -----YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 293

Query: 568 MYYMTGNYSDSYNTLKSAISKFRTS 592
              M G            +S   T 
Sbjct: 294 ALSMLGQSDAYGAADARDLSTLLTM 318

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 38/304 (12%), Positives = 88/304 (28%), Gaps = 46/304 (15%)

Query: 240 QKALELAKR-----AMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVE 294
           ++ L   +      A+  FE      P  + +     L        Q   AI  L R +E
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQELLAISALRRCLE 81

Query: 295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETC 354
           +         ALA       L      + +         A L    +             
Sbjct: 82  LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG--AGGAGLGPS 139

Query: 355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALE 414
           + +  + +    F E +++   A+ +   +  P        +  +G++ +  G+Y+ A++
Sbjct: 140 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD------VQCGLGVLFNLSGEYDKAVD 193

Query: 415 HYVLASMSMAANGH----------------------------ELDVASIDCSIGDAYLSL 446
            +  A      +                              +        ++G + ++L
Sbjct: 194 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 253

Query: 447 ARFDEAIFSYHKALTAFKSAKGENHPAVA---SVFVRLADLYHKIGKLRDSKSYCENALK 503
               EA+  + +AL   + ++G      A   +++  L      +G+     +     L 
Sbjct: 254 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 313

Query: 504 IYGK 507
               
Sbjct: 314 TLLT 317

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 28/166 (16%)

Query: 262 SLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAM 321
           SL + + L     +      +  A+       +         H+      C  +G  Y +
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAFSAVQD--------PHSRI----CFNIGCMYTI 48

Query: 322 LGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIH 381
           L  +  +   +T  +             +          + Q+ ++D A K  + AL   
Sbjct: 49  LKNMTEAEKAFTRSINRD--------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 100

Query: 382 RENTSPASIEEAADRRL--------MGLICDSKGDYEAALEHYVLA 419
           R N            +L        +  +   K +++ A E   LA
Sbjct: 101 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 26/167 (15%)

Query: 389 SIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR 448
           S+ EA      G++   K D++ AL+ +         +  +   + I  +IG  Y  L  
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAF---------SAVQDPHSRICFNIGCMYTILKN 51

Query: 449 FDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKP 508
             EA  ++ +++             +A  + +   LY++  K   +    + AL    + 
Sbjct: 52  MTEAEKAFTRSI--------NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RG 102

Query: 509 NHGIPSEEIA--------SGLIDIAAIYQSMNELEQAVKLLNKALKI 547
           N  I  + +           L +IA +Y    E ++A + L  A  +
Sbjct: 103 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 26/163 (15%)

Query: 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYN 580
           L +   +     + + A+   +     + +          I   +G MY +  N +++  
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSAVQDPHSR----------ICFNIGCMYTILKNMTEAEK 57

Query: 581 TLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYG---- 636
               +I++ +               Q G+   Q    + A    +EA   L         
Sbjct: 58  AFTRSINRDKHLAVAY--------FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 109

Query: 637 ----PYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREE 675
                +      V  N+A  Y        A E L     M+ E
Sbjct: 110 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 10/109 (9%)

Query: 439 IGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYC 498
           +G+       FD A+  Y KA         E  P   +     A +Y + G     +  C
Sbjct: 10  LGNDAYKKKDFDTALKHYDKA--------KELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 499 ENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
           E A+++     +     +IA     I   Y    + + A+   NK+L  
Sbjct: 62  EKAIEVG--RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 23/149 (15%), Positives = 55/149 (36%), Gaps = 24/149 (16%)

Query: 391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFD 450
           ++A   + +G     K D++ AL+HY        A   +    +   +    Y     ++
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHY------DKAKELDPTNMTYITNQAAVYFEKGDYN 55

Query: 451 EAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH 510
           +      KA+   +    E++  +A  + R+ + Y K  K +D+  +   +L  +  P+ 
Sbjct: 56  KCRELCEKAIEVGREN-REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD- 113

Query: 511 GIPSEEIASGLIDIAAIYQSMNELEQAVK 539
                           + +   + E+ +K
Sbjct: 114 ----------------VLKKCQQAEKILK 126

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 13/129 (10%), Positives = 35/129 (27%), Gaps = 12/129 (9%)

Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
           ++ +  +S+    +    +         A G    +    +                   
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEK-----AAGSVSKSTQFEYAWC-------LVRTRYNDD 51

Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST 557
               + +  +       EE    +  +A     + E E+A+K +   L+   +    +  
Sbjct: 52  IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 111

Query: 558 IAGIEAQMG 566
              I+  M 
Sbjct: 112 ERLIDKAMK 120

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 27/326 (8%), Positives = 70/326 (21%), Gaps = 54/326 (16%)

Query: 225 LLKQTREMISSGENPQKALELAKRAMK---SFEICANGKPSLEQVMCLHVLAAIHCSLGQ 281
             +   +   +GE  +  LEL  + +     F    N +   E +  L    +   S   
Sbjct: 31  ATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRR--EVLQHLETEKSPEESAAL 88

Query: 282 YNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQ 341
               +  LE       L                     + L +       +   LE+  +
Sbjct: 89  VKAELGFLES-----CLRVNPKSYGT----WHHRCWLLSRLPEPN-----WARELELCAR 134

Query: 342 VLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGL 401
            L   +            A   ++   E        +  +  N S               
Sbjct: 135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS--------WHYRSC 186

Query: 402 ICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALT 461
           +         +     L    +               +          D++ + YH+   
Sbjct: 187 LLPQLHPQPDSGPQGRLPENVLLKE----------LELVQNAFFTDPNDQSAWFYHR--- 233

Query: 462 AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGL 521
                                +    +    +S    +              ++     +
Sbjct: 234 -----WLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE---------NKWCLLTI 279

Query: 522 IDIAAIYQSMNELEQAVKLLNKALKI 547
           I +      +   ++ ++  +    +
Sbjct: 280 ILLMRALDPLLYEKETLQYFSTLKAV 305

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 2/137 (1%)

Query: 430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIG 489
           L+ A+I    G  Y    ++ +A+  Y K ++  +   G +     +    L   +  + 
Sbjct: 12  LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 71

Query: 490 KLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYG 549
                         +               GL         MNE E A     K L++  
Sbjct: 72  MCYLKLREYTK--AVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129

Query: 550 KTPGQQSTIAGIEAQMG 566
           +    +  I   + +  
Sbjct: 130 QNKAARLQIFMCQKKAK 146

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 23/202 (11%), Positives = 55/202 (27%), Gaps = 5/202 (2%)

Query: 264 EQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLG 323
           E+   L+    ++ SLG    A     +++ I        + L  +       D      
Sbjct: 35  ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94

Query: 324 QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE 383
                +        + R +      R       +   +              +A     E
Sbjct: 95  DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE 154

Query: 384 NTSPASIEEA-----ADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCS 438
             +   +++       ++    ++    G+         L + +         ++  +  
Sbjct: 155 KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFY 214

Query: 439 IGDAYLSLARFDEAIFSYHKAL 460
           +G  YLSL   D A   +  A+
Sbjct: 215 LGKYYLSLGDLDSATALFKLAV 236

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	728
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.93
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.79
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.78
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.74
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.72
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.7
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.69
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.69
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.69
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.36
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.35
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.33
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.32
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.31
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.25
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.25
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.24
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.22
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.21
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.2
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.2
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.19
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.19
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.18
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.18
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.17
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.17
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.15
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.14
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.13
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.12
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.1
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.0
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.97
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.86
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.85
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.82
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.81
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.64
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.37
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.22
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.72
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.57
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.08
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.98
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.77
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	95.6
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	93.51
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	93.3
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	92.85
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	91.53
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	90.72
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	90.18
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	88.4
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	87.89
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	87.21

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-33  Score=290.07  Aligned_cols=387  Identities=17%  Similarity=0.207  Sum_probs=333.6

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCch
Q 004829          225 LLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDH  304 (728)
Q Consensus       225 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  304 (728)
                      |+.+|..++..| +|++|+..|+++++..         |....++..+|.+|...|++++|+.+|++++++.     +..
T Consensus         2 ll~la~~~~~~G-~~~~A~~~~~~~l~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~   66 (388)
T d1w3ba_           2 PMELAHREYQAG-DFEAAERHCMQLWRQE---------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLL   66 (388)
T ss_dssp             CCTHHHHHHHHT-CHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             hHHHHHHHHHcC-CHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC
Confidence            356889999997 9999999999999852         4456778999999999999999999999999875     444


Q ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 004829          305 ALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN  384 (728)
Q Consensus       305 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  384 (728)
                      +    .++..+|.+|..+|++++|+..+..++..        .+.........+......+.+..+..............
T Consensus        67 ~----~a~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (388)
T d1w3ba_          67 A----EAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL  134 (388)
T ss_dssp             H----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC
T ss_pred             H----HHHHHHHHHhhhhcccccccccccccccc--------cccccccccccccccccccccccccccccccccccccc
Confidence            3    35999999999999999999999999988        56666677777777888888877777666655433222


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004829          385 TSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFK  464 (728)
Q Consensus       385 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  464 (728)
                      .        ......+......+....+...+.+.+..      .|....++..+|.++...|++++|...+++++.+  
T Consensus       135 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--  198 (388)
T d1w3ba_         135 Y--------CVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--  198 (388)
T ss_dssp             T--------HHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--
T ss_pred             c--------cccccccccccccchhhhhHHHHHHhhcc------CcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--
Confidence            1        23566777888889999999988877654      4667789999999999999999999999999998  


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004829          465 SAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA  544 (728)
Q Consensus       465 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  544 (728)
                            +|....++..+|.++...|++++|+..++++....         +.....+..+|.++...|++++|+.+|+++
T Consensus       199 ------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  263 (388)
T d1w3ba_         199 ------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---------PNHAVVHGNLACVYYEQGLIDLAIDTYRRA  263 (388)
T ss_dssp             ------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh---------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                  88888999999999999999999999999999883         234567889999999999999999999999


Q ss_pred             HHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829          545 LKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLF  624 (728)
Q Consensus       545 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  624 (728)
                      +++.+..       ..++..+|.++...|++.+|+..++.++..        .+.....+..+|.++...|++++|+.+|
T Consensus       264 l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~  328 (388)
T d1w3ba_         264 IELQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLY  328 (388)
T ss_dssp             HHTCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--------CCccchhhhHHHHHHHHCCCHHHHHHHH
Confidence            9876544       568889999999999999999999999876        3334578899999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829          625 EEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR  700 (728)
Q Consensus       625 ~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  700 (728)
                      ++++++        +|+...+++.+|.+|..+|++++|+.+|++++++        +|+...++.+||.+|.++|+
T Consensus       329 ~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         329 RKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCC
Confidence            999988        8888889999999999999999999999999984        58888899999999999986

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-30  Score=273.28  Aligned_cols=371  Identities=18%  Similarity=0.229  Sum_probs=318.3

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChH
Q 004829          270 HVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHR  349 (728)
Q Consensus       270 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  349 (728)
                      +.+|..+++.|+|++|+..|+++++..     +.++.    ++..+|.+|...|++++|+.+|+++++.        +|.
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~-----p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~   65 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQE-----PDNTG----VLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPL   65 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence            357899999999999999999999875     44433    4899999999999999999999999998        788


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 004829          350 VGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHE  429 (728)
Q Consensus       350 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  429 (728)
                      ...++..+|.+|...|++++|+..+..++...+...        ......+......+.+..+..........      .
T Consensus        66 ~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  131 (388)
T d1w3ba_          66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI--------DGYINLAAALVAAGDMEGAVQAYVSALQY------N  131 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHSCSSHHHHHHHHHHHH------C
T ss_pred             CHHHHHHHHHHhhhhccccccccccccccccccccc--------ccccccccccccccccccccccccccccc------c
Confidence            889999999999999999999999999987654332        23455566666667666666665544332      2


Q ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC
Q 004829          430 LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPN  509 (728)
Q Consensus       430 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  509 (728)
                      ..........+......+....+...+.+.+..        .|....++..+|.++...|++++|..++++++.+     
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----  198 (388)
T d1w3ba_         132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----  198 (388)
T ss_dssp             TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----
T ss_pred             cccccccccccccccccchhhhhHHHHHHhhcc--------CcchhHHHHhhcccccccCcHHHHHHHHHHHHHh-----
Confidence            233445667778888899999999999999887        7888899999999999999999999999999998     


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          510 HGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF  589 (728)
Q Consensus       510 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  589 (728)
                          .|....++..+|.++...|++++|+..++++..+.+..       ...+..+|.++...|++++|+.+|++++++ 
T Consensus       199 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-  266 (388)
T d1w3ba_         199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIEL-  266 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred             ----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence                34456789999999999999999999999998875544       567788999999999999999999999986 


Q ss_pred             HHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          590 RTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYV  669 (728)
Q Consensus       590 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a  669 (728)
                             .+....++..+|.++...|++++|+..|+.++..        .|....++..+|.++...|++++|+.+|+++
T Consensus       267 -------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  331 (388)
T d1w3ba_         267 -------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKA  331 (388)
T ss_dssp             -------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--------CCccchhhhHHHHHHHHCCCHHHHHHHHHHH
Confidence                   3334678999999999999999999999999988        7778889999999999999999999999999


Q ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhccccc
Q 004829          670 VGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNL  720 (728)
Q Consensus       670 l~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~  720 (728)
                      ++        .+|+...++..+|.+|..+|++++|+ ..++.+++.+|+..
T Consensus       332 l~--------~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~P~~~  373 (388)
T d1w3ba_         332 LE--------VFPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPTFA  373 (388)
T ss_dssp             TT--------SCTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTTCH
T ss_pred             HH--------hCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCH
Confidence            97        45888899999999999999999999 99999999988754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.3e-22  Score=209.44  Aligned_cols=354  Identities=13%  Similarity=0.065  Sum_probs=295.9

Q ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 004829          348 HRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANG  427 (728)
Q Consensus       348 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  427 (728)
                      +..++.....|.++...|++++|+.+++++++..+..   .....+.++..+|.++...|++++|+..|++++.+....+
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~---~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~   85 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD   85 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCC---CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence            3455677778999999999999999999999876543   3344566789999999999999999999999999988888


Q ss_pred             CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          428 HELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       428 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      +.+....++..++.++...|++..|...+.+++.+.........+.....+..+|.++...|+++.|..++.+++.....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~  165 (366)
T d1hz4a_          86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  165 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence            88888999999999999999999999999999999988877777888889999999999999999999999999998766


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS  587 (728)
Q Consensus       508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  587 (728)
                      ..    ......++..++..+...+++.++...+.++..+.............++..++.++...|++++|..++++++.
T Consensus       166 ~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  241 (366)
T d1hz4a_         166 YQ----PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK  241 (366)
T ss_dssp             SC----GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             hh----hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            43    34456788889999999999999999999999998887555556677788899999999999999999998875


Q ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004829          588 KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILE  667 (728)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~  667 (728)
                      .    ....+......+..+|.++...|++++|..++++++......  ...|....++..+|.+|..+|++++|+.+|+
T Consensus       242 ~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  315 (366)
T d1hz4a_         242 P----EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL  315 (366)
T ss_dssp             C----CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             h----ccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4    222334456678889999999999999999999999987764  3367888899999999999999999999999


Q ss_pred             HHHHHHHHHcCC-CChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHh
Q 004829          668 YVVGMREEKLGT-ANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLD  714 (728)
Q Consensus       668 ~al~~~~~~~~~-~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~  714 (728)
                      +++.+..+.--. ........+..+...+...++.+++.....+.+++
T Consensus       316 ~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~~ll~  363 (366)
T d1hz4a_         316 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILR  363 (366)
T ss_dssp             HHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            999987654111 00112344556666777889999988555666554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=5.8e-21  Score=196.95  Aligned_cols=345  Identities=13%  Similarity=0.027  Sum_probs=281.3

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcC
Q 004829          265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLG  344 (728)
Q Consensus       265 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  344 (728)
                      .+.+....|.+++..|++++|+.+|++++...+    .......+.++..+|.+|...|++++|+..|++++.+....  
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~----~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--   84 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--   84 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc----CCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--
Confidence            355666789999999999999999999998752    12223345678999999999999999999999999987763  


Q ss_pred             CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          345 ETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMA  424 (728)
Q Consensus       345 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  424 (728)
                      .+.+....++..++.++...|++..|...+.+++.+.+..........+..+..+|.++...|+++.|...+.++.....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~  164 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  164 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhh
Confidence            33456777889999999999999999999999999999887777777777888999999999999999999999987765


Q ss_pred             hcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          425 ANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       425 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      .... .....++..++.++...+++..+...+.++..+..... ...+....++..++.++...|++++|..++++++..
T Consensus       165 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  242 (366)
T d1hz4a_         165 SYQP-QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  242 (366)
T ss_dssp             TSCG-GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             hhhh-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            5443 44567888999999999999999999999998876652 234556777888999999999999999999988765


Q ss_pred             HcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004829          505 YGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKS  584 (728)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  584 (728)
                      ...     ..+.....+..+|.++...|++++|..++++++...... +..+....++..+|.+|..+|++++|+.++++
T Consensus       243 ~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         243 EFA-----NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             CCT-----TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccc-----cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc-ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            322     344556778889999999999999999999999998876 56667788899999999999999999999999


Q ss_pred             HHHHHHHhCCCCcH-HHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829          585 AISKFRTSGEKKSA-LFGIALNQMGLACVQRYTINEAADL  623 (728)
Q Consensus       585 al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~  623 (728)
                      ++++....+..... .....+..+...+...++.+++...
T Consensus       317 Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         317 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            99998776543211 0123344455556666776666543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.9e-22  Score=203.51  Aligned_cols=282  Identities=15%  Similarity=0.103  Sum_probs=223.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH  348 (728)
Q Consensus       269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  348 (728)
                      .+..|..++..|++++|+..|+++++..     |.++    .++..+|.+|...|++++|+.+|.+++++        .|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p   84 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-----PKHM----EAWQYLGTTQAENEQELLAISALRRCLEL--------KP   84 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCChHHHHHHHHhhhcc--------cc
Confidence            4578999999999999999999999875     4444    35999999999999999999999999998        78


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH-HHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI-EEAA------DRRLMGLICDSKGDYEAALEHYVLASM  421 (728)
Q Consensus       349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~a~------~~~~lg~~~~~~g~~~~A~~~~~~al~  421 (728)
                      .....+..+|.+|...|++++|+..+++++.+.+........ ....      ........+...+.+.+|+..|.+++.
T Consensus        85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_          85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999876543221100 0000      011122334456778889999988876


Q ss_pred             HHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004829          422 SMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENA  501 (728)
Q Consensus       422 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  501 (728)
                      +.   + ....+.++..+|.++...|++++|+.+|++++..        .|....++..+|.+|...|++++|+.+|+++
T Consensus       165 ~~---p-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  232 (323)
T d1fcha_         165 LD---P-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRA  232 (323)
T ss_dssp             HS---T-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             Hh---h-cccccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHHHH
Confidence            52   1 1223568889999999999999999999999998        7888899999999999999999999999999


Q ss_pred             HHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC----cHHHHHHHHHHHHHHcCCHHH
Q 004829          502 LKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS----TIAGIEAQMGVMYYMTGNYSD  577 (728)
Q Consensus       502 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~  577 (728)
                      +++         .|....++..+|.+|...|++++|+.+|++++++.++..+...    ....++..++.++...++.+.
T Consensus       233 l~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~  303 (323)
T d1fcha_         233 LEL---------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  303 (323)
T ss_dssp             HHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHH---------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence            998         3345678999999999999999999999999999987644321    233456678888888888877


Q ss_pred             HHHHHHHHHHH
Q 004829          578 SYNTLKSAISK  588 (728)
Q Consensus       578 A~~~~~~al~~  588 (728)
                      +.....+.+..
T Consensus       304 ~~~~~~~~l~~  314 (323)
T d1fcha_         304 YGAADARDLST  314 (323)
T ss_dssp             HHHHHTTCHHH
T ss_pred             HHHHHHhCHHH
Confidence            76665555544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.3e-22  Score=201.04  Aligned_cols=275  Identities=16%  Similarity=0.130  Sum_probs=221.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 004829          396 RRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA  475 (728)
Q Consensus       396 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  475 (728)
                      .+..|..++..|++++|+..|++++..      .|..+.++..+|.++...|++++|+.+|.+++++        .|...
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~   87 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQ   87 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------ccccc
Confidence            467899999999999999999999865      6777889999999999999999999999999998        78888


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 004829          476 SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIAS------GLIDIAAIYQSMNELEQAVKLLNKALKIYG  549 (728)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~  549 (728)
                      ..+..+|.+|...|++++|+..+++++.+...............      ........+...+.+.+|+..|.+++.+.+
T Consensus        88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p  167 (323)
T d1fcha_          88 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP  167 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             cccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999987543210000000111      111222344566788999999999998865


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          550 KTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEART  629 (728)
Q Consensus       550 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  629 (728)
                      ...     .+.++..+|.++...|++++|+.+|++++..        .+....++..+|.++...|++++|+.+|+++++
T Consensus       168 ~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  234 (323)
T d1fcha_         168 TSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE  234 (323)
T ss_dssp             TSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccc-----ccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence            432     2567789999999999999999999999987        333467899999999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC---CChHHHHHHHHHHHHHHHhCChhHHH
Q 004829          630 ILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGT---ANPDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                      +        +|....+++.+|.+|..+|++++|+.+|++++++.....+.   .......++..++.++..+|+.+.+.
T Consensus       235 ~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         235 L--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             H--------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            8        78888899999999999999999999999999987543221   11222345677888999999987765

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.5e-18  Score=169.82  Aligned_cols=262  Identities=11%  Similarity=0.032  Sum_probs=215.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcC
Q 004829          390 IEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLAR-FDEAIFSYHKALTAFKSAKG  468 (728)
Q Consensus       390 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~  468 (728)
                      +..+.++..+|.++...+.+++|+..+.+++.+      .|....+|+++|.++..+|+ +++|+.++++++++      
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~------  107 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------  107 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH------
Confidence            456778899999999999999999999999987      78889999999999999875 99999999999999      


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          469 ENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY  548 (728)
Q Consensus       469 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  548 (728)
                        +|....++.++|.++..+|++++|+.++.+++++         .|....+|.++|.++...|++++|+.+|++++++.
T Consensus       108 --~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~---------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~  176 (315)
T d2h6fa1         108 --QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ---------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED  176 (315)
T ss_dssp             --CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             --HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh---------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence              9999999999999999999999999999999999         44567899999999999999999999999999987


Q ss_pred             hcCCCCCCcHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          549 GKTPGQQSTIAGIEAQMGVMYYMTGN------YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAAD  622 (728)
Q Consensus       549 ~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  622 (728)
                      +..       ..++.++|.++...+.      +++|+..+.+++.+        .+....++..++.++... ...++..
T Consensus       177 p~n-------~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~-~~~~~~~  240 (315)
T d2h6fa1         177 VRN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDR-GLSKYPN  240 (315)
T ss_dssp             TTC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTT-CGGGCHH
T ss_pred             Ccc-------HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhc-ChHHHHH
Confidence            665       5688899999888776      57899999999988        344567888888886554 4688889


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 004829          623 LFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA--MGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLK  696 (728)
Q Consensus       623 ~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~  696 (728)
                      .+++++++.     + .+....++..++.+|..  .+..+.+...+.+++.+........+|.....+..++..+.
T Consensus       241 ~~~~~~~l~-----~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l~  310 (315)
T d2h6fa1         241 LLNQLLDLQ-----P-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ  310 (315)
T ss_dssp             HHHHHHHHT-----T-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-----C-CcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            999888871     1 11234456677777754  47778889999999988766554455655555555555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.2e-17  Score=168.33  Aligned_cols=258  Identities=11%  Similarity=0.007  Sum_probs=212.8

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCC
Q 004829          308 KFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSL-QFDEAEKICQMALDIHRENTS  386 (728)
Q Consensus       308 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~  386 (728)
                      ...++..+|.++...+.+++|+.++++++++        .|....+|..+|.++...| ++++|+.++++++.+.|+.  
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~--  111 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--  111 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh--
Confidence            4557889999999999999999999999999        8999999999999999987 5999999999999987665  


Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004829          387 PASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSA  466 (728)
Q Consensus       387 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  466 (728)
                            ..++..+|.++..+|++++|+..+.+++.+      +|....+|.++|.++...|++++|+..|++++++    
T Consensus       112 ------~~a~~~~~~~~~~l~~~~eAl~~~~kal~~------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~----  175 (315)
T d2h6fa1         112 ------YQVWHHRRVLVEWLRDPSQELEFIADILNQ------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE----  175 (315)
T ss_dssp             ------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----
T ss_pred             ------hhHHHHHhHHHHhhccHHHHHHHHhhhhhh------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----
Confidence                  357999999999999999999999999987      6778899999999999999999999999999999    


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004829          467 KGENHPAVASVFVRLADLYHKIGK------LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKL  540 (728)
Q Consensus       467 ~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  540 (728)
                          +|....++.++|.++...+.      +++|+.++.+++.+         .|....++..++.++...+ ..++...
T Consensus       176 ----~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~---------~P~~~~~~~~l~~ll~~~~-~~~~~~~  241 (315)
T d2h6fa1         176 ----DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---------VPHNESAWNYLKGILQDRG-LSKYPNL  241 (315)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHTTTC-GGGCHHH
T ss_pred             ----CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh---------CCCchHHHHHHHHHHHhcC-hHHHHHH
Confidence                89999999999999998877      57899999999999         3445677888888866554 5888899


Q ss_pred             HHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 004829          541 LNKALKIYGKTPGQQSTIAGIEAQMGVMYYM--TGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLA  610 (728)
Q Consensus       541 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  610 (728)
                      +++++++.+...     ...++..++.+|..  .++.+.+...+.+++.++.......++.....|..++..
T Consensus       242 ~~~~~~l~~~~~-----~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~  308 (315)
T d2h6fa1         242 LNQLLDLQPSHS-----SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS  308 (315)
T ss_dssp             HHHHHHHTTTCC-----CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHhCCCcC-----CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999988765531     13345566666644  477778888899998876654433333333444444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.7e-16  Score=158.11  Aligned_cols=227  Identities=13%  Similarity=0.062  Sum_probs=185.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 004829          396 RRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVA  475 (728)
Q Consensus       396 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  475 (728)
                      |...|.+|...+++++|+..|.+++.+....++.+..+.++.++|.+|..+|++++|+.+|+++++++...  ++.....
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~  117 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhHH
Confidence            44567788999999999999999999999988889999999999999999999999999999999998876  4466677


Q ss_pred             HHHHHHHHHHHH-cCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829          476 SVFVRLADLYHK-IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ  554 (728)
Q Consensus       476 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  554 (728)
                      .++..+|.+|.. .|++++|+.+|++++++.....   ..+....++..+|.++..+|+|++|+.+|++++...+.....
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~---~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ---SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC---chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence            889999999866 6999999999999999987643   456678899999999999999999999999999988777555


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHH
Q 004829          555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQ--RYTINEAADLFEEARTI  630 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~  630 (728)
                      .......+..++.++...|++..|...+++++++........   ....+..+..++..  .+.+++|+..|.++.++
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr---e~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR---ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            556677788899999999999999999999987744332211   12345556666554  34688888888776655

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=6.9e-17  Score=158.22  Aligned_cols=224  Identities=13%  Similarity=0.030  Sum_probs=160.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 004829          408 DYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK  487 (728)
Q Consensus       408 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  487 (728)
                      +.+.|+..+.+++..  ....++..+.+++.+|.+|...|++++|+..|++++.+        .|..+.++..+|.+|..
T Consensus        14 ~~e~al~~~~e~l~~--~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~~   83 (259)
T d1xnfa_          14 QQEVILARMEQILAS--RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQ   83 (259)
T ss_dssp             HHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh--hhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHHHH
Confidence            345556666554321  11234667889999999999999999999999999998        88888999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Q 004829          488 IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGV  567 (728)
Q Consensus       488 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~  567 (728)
                      +|++++|+.+|++++++.         |....++..+|.+|..+|++++|+..|++++++.+..       ......++.
T Consensus        84 ~g~~~~A~~~~~~al~~~---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~  147 (259)
T d1xnfa_          84 AGNFDAAYEAFDSVLELD---------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-------PFRSLWLYL  147 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHC---------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHH
T ss_pred             HHHHHHhhhhhhHHHHHH---------hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc-------HHHHHHHHH
Confidence            999999999999999983         3345689999999999999999999999999886543       233445666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004829          568 MYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYS  647 (728)
Q Consensus       568 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  647 (728)
                      ++...+....+.........    . .............++. ....+.++.+...+..+...        .|....+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  213 (259)
T d1xnfa_         148 AEQKLDEKQAKEVLKQHFEK----S-DKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSETNF  213 (259)
T ss_dssp             HHHHHCHHHHHHHHHHHHHH----S-CCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHhhc----c-chhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHHHH
Confidence            66666655544433333222    1 2222211111111111 11123355555555555555        667778999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHH
Q 004829          648 NLAGTYDAMGRIDDAIEILEYVVG  671 (728)
Q Consensus       648 ~La~~~~~~g~~~~A~~~~~~al~  671 (728)
                      .||.+|..+|++++|+.+|++++.
T Consensus       214 ~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         214 YLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999999999997

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.7e-15  Score=150.70  Aligned_cols=226  Identities=12%  Similarity=0.068  Sum_probs=180.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHH
Q 004829          354 CRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVA  433 (728)
Q Consensus       354 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  433 (728)
                      |...|.+|...++|++|+.+|.+++++.....+  ....+.++..+|.+|...|++++|+.+|.+++.+....+......
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~--~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGN--EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence            344577789999999999999999999988764  345677899999999999999999999999999999988888889


Q ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829          434 SIDCSIGDAYLS-LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI  512 (728)
Q Consensus       434 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (728)
                      .++..+|.+|.. .|++++|+.+|++++++....  +..+....++.++|.+|..+|+|++|+.+|++++.......  .
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~--~  193 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR--L  193 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT--T
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch--h
Confidence            999999999866 699999999999999998765  34566788899999999999999999999999999865532  2


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 004829          513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYM--TGNYSDSYNTLKSAIS  587 (728)
Q Consensus       513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~  587 (728)
                      ........+...+.++...|++..|...+++++++.+......  ....+..+..++..  .+.+++|+..|.++.+
T Consensus       194 ~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr--e~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR--ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            2344566778899999999999999999999988776543211  13344555555544  3457888887765543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=9.8e-17  Score=163.68  Aligned_cols=275  Identities=8%  Similarity=-0.083  Sum_probs=219.0

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHHcC
Q 004829          316 GDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ----------SLQFDEAEKICQMALDIHRENT  385 (728)
Q Consensus       316 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~~~~~  385 (728)
                      .......+..++|+.++++++..        +|....+|...+.++..          .|++++|+.++++++...|+..
T Consensus        36 ~~~~~~~~~~~~al~~~~~~l~~--------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~  107 (334)
T d1dcea1          36 FQKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY  107 (334)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhcccccHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence            33333344558999999999998        78887777766666544          4458899999999998765542


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcCCChhHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004829          386 SPASIEEAADRRLMGLICDSKGD--YEAALEHYVLASMSMAANGHELDVASI-DCSIGDAYLSLARFDEAIFSYHKALTA  462 (728)
Q Consensus       386 ~~~~~~~a~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~  462 (728)
                              .++..+|.++...++  +++|+..+.+++..      .+....+ +..+|.++...+.+++|+.++++++.+
T Consensus       108 --------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~  173 (334)
T d1dcea1         108 --------GTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR  173 (334)
T ss_dssp             --------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred             --------HHHHHhhHHHHHhccccHHHHHHHHHHHHhh------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc
Confidence                    357788888777664  89999999999876      3433444 567788999999999999999999998


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829          463 FKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLN  542 (728)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  542 (728)
                              +|....++.++|.++..+|++++|...+.+++.+.         +...    .....+...+..++|...+.
T Consensus       174 --------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~----~~~~~~~~l~~~~~a~~~~~  232 (334)
T d1dcea1         174 --------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL---------LKEL----ELVQNAFFTDPNDQSAWFYH  232 (334)
T ss_dssp             --------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH---------HHHH----HHHHHHHHHCSSCSHHHHHH
T ss_pred             --------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH---------HHHH----HHHHHHHHhcchhHHHHHHH
Confidence                    88889999999999999999999999998888874         2222    23344556677888999999


Q ss_pred             HHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004829          543 KALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAAD  622 (728)
Q Consensus       543 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  622 (728)
                      +++...+.....       +..++.++...+++.+|+..+.+++..        .+....++..+|.++...|++++|+.
T Consensus       233 ~~l~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~eA~~  297 (334)
T d1dcea1         233 RWLLGRAEPLFR-------CELSVEKSTVLQSELESCKELQELEPE--------NKWCLLTIILLMRALDPLLYEKETLQ  297 (334)
T ss_dssp             HHHHSCCCCSSS-------CCCCHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHCTGGGHHHHHH
T ss_pred             HHHHhCcchhhH-------HHHHHHHHHHHhhHHHHHHHHHHHHhh--------CchHHHHHHHHHHHHHHCCCHHHHHH
Confidence            998776554322       235677888889999999999988765        66778999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829          623 LFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       623 ~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~  656 (728)
                      +|++++++        +|.....|..|+..+...
T Consensus       298 ~~~~ai~l--------dP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         298 YFSTLKAV--------DPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             HHHHHHHH--------CGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--------CcccHHHHHHHHHHHhHh
Confidence            99999999        998888899898887753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=7.7e-16  Score=150.61  Aligned_cols=225  Identities=12%  Similarity=0.016  Sum_probs=162.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829          238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD  317 (728)
Q Consensus       238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  317 (728)
                      ..+.|+..+++++...     ...++..+.+++.+|.+|...|++++|+..|++++.+.     ++.+.    +++.+|.
T Consensus        14 ~~e~al~~~~e~l~~~-----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-----p~~~~----a~~~lg~   79 (259)
T d1xnfa_          14 QQEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----PDMPE----VFNYLGI   79 (259)
T ss_dssp             HHHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCCHH----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh-----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-----CCCHH----HHhhhch
Confidence            3556666666665421     12346678899999999999999999999999999886     55544    4999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 004829          318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRR  397 (728)
Q Consensus       318 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~  397 (728)
                      +|..+|++++|+.+|++++.+        +|....++..+|.+|...|++++|+..|++++++.+...        ....
T Consensus        80 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~  143 (259)
T d1xnfa_          80 YLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--------FRSL  143 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------HHHH
T ss_pred             HHHHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH--------HHHH
Confidence            999999999999999999999        788888999999999999999999999999998765421        2344


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 004829          398 LMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASV  477 (728)
Q Consensus       398 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  477 (728)
                      .++.++...+....+.........   .....+........++. ....+.+..+...+...+..        .+....+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  211 (259)
T d1xnfa_         144 WLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSET  211 (259)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHH
Confidence            556666666655544444332221   11222221111111111 11223345555555555555        6677888


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004829          478 FVRLADLYHKIGKLRDSKSYCENALKI  504 (728)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~  504 (728)
                      ++.+|.+|...|++++|+.+|++++..
T Consensus       212 ~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         212 NFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999876

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.3e-17  Score=170.31  Aligned_cols=274  Identities=7%  Similarity=-0.117  Sum_probs=218.7

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHHHHhcCCC
Q 004829          360 AHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGL----------ICDSKGDYEAALEHYVLASMSMAANGHE  429 (728)
Q Consensus       360 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~----------~~~~~g~~~~A~~~~~~al~~~~~~~~~  429 (728)
                      .....+..++|+.++++++.+.|...        .+|+..+.          .+...|++++|+.++++++..      .
T Consensus        38 ~~~~~~~~~~al~~~~~~l~~~P~~~--------~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~------~  103 (334)
T d1dcea1          38 KRQAGELDESVLELTSQILGANPDFA--------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------N  103 (334)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH------C
T ss_pred             HHhcccccHHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh------C
Confidence            33344456899999999998776542        23333333          344556688999999988865      5


Q ss_pred             hhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHHHHcCChHHHHHHHHHHHHHHc
Q 004829          430 LDVASIDCSIGDAYLSLAR--FDEAIFSYHKALTAFKSAKGENHPAVASV-FVRLADLYHKIGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       430 ~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~  506 (728)
                      |....++..+|.++...++  +++|+..+.+++..        +|....+ +..+|.++...+.+++|+.++++++.+  
T Consensus       104 pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--  173 (334)
T d1dcea1         104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  173 (334)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred             CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh--------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--
Confidence            7778889999998888775  89999999999998        6655555 457788999999999999999999887  


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAI  586 (728)
Q Consensus       507 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  586 (728)
                             +|....+|..+|.++..+|++++|+..+++++.+.+..           ......+...+..++|...+.+++
T Consensus       174 -------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~a~~~~~~~l  235 (334)
T d1dcea1         174 -------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-----------LELVQNAFFTDPNDQSAWFYHRWL  235 (334)
T ss_dssp             -------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-----------HHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-----------HHHHHHHHHhcchhHHHHHHHHHH
Confidence                   34467789999999999999999999988888887654           234455667788889999999887


Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004829          587 SKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEIL  666 (728)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~  666 (728)
                      ...        +.....+..+|.++...+++.+|+..|.+++..        +|....++..+|.+|..+|++++|+.+|
T Consensus       236 ~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~eA~~~~  299 (334)
T d1dcea1         236 LGR--------AEPLFRCELSVEKSTVLQSELESCKELQELEPE--------NKWCLLTIILLMRALDPLLYEKETLQYF  299 (334)
T ss_dssp             HSC--------CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred             HhC--------cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--------CchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            651        112345667788888999999999999999988        9999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829          667 EYVVGMREEKLGTANPDVEDEKRRLAELLKEAG  699 (728)
Q Consensus       667 ~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  699 (728)
                      ++++++        +|.....+..|+..+....
T Consensus       300 ~~ai~l--------dP~~~~y~~~L~~~~~~e~  324 (334)
T d1dcea1         300 STLKAV--------DPMRAAYLDDLRSKFLLEN  324 (334)
T ss_dssp             HHHHHH--------CGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--------CcccHHHHHHHHHHHhHhh
Confidence            999996        4888888888888777543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.3e-14  Score=150.75  Aligned_cols=282  Identities=9%  Similarity=-0.008  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHc
Q 004829          327 NSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSK  406 (728)
Q Consensus       327 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~  406 (728)
                      +|+++|++|+.+        .|+.+.++.++|.++..++++.+|   |++++...++..        ..+...+.++  .
T Consensus         4 eA~q~~~qA~~l--------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a--------~~~~~e~~Lw--~   62 (497)
T d1ya0a1           4 QSAQYLRQAEVL--------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYA--------LDKKVEQDLW--N   62 (497)
T ss_dssp             HHHHHHHHHHHH--------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHH--------HHHTHHHHHH--H
T ss_pred             HHHHHHHHHHHc--------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhH--------HHHhHHHHHH--H
Confidence            789999999999        688888999999999999999876   788886654321        1121111111  1


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 004829          407 GDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH  486 (728)
Q Consensus       407 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  486 (728)
                      ..|..+++.+++....   .............++.++...+.|+.|+..+.+++.+        .+.....+.++|.++.
T Consensus        63 ~~y~~~ie~~r~~~k~---~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg~~~~  131 (497)
T d1ya0a1          63 HAFKNQITTLQGQAKN---RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLGIISN  131 (497)
T ss_dssp             HHTHHHHHHHHHHHSC---SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------
T ss_pred             HHHHHHHHHHHHhccc---ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhHHHHH
Confidence            1234555555544321   1111111122223455666677777777777777766        6778888999999999


Q ss_pred             HcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 004829          487 KIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG  566 (728)
Q Consensus       487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la  566 (728)
                      ..|++++|...+.+++...           ...++.++|.++...|++++|+.+|++|+.+.++.       +..+++||
T Consensus       132 ~~~~~~~A~~~~~~al~~~-----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~-------~~~~~~Lg  193 (497)
T d1ya0a1         132 KQTHTSAIVKPQSSSCSYI-----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-------GQPYNQLA  193 (497)
T ss_dssp             -----------CCHHHHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-------SHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHhCCC-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------hHHHHHHH
Confidence            9999999999999998772           34678899999999999999999999999998776       57889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829          567 VMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY  646 (728)
Q Consensus       567 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  646 (728)
                      .++...|++.+|+.+|.+|+.+        .+....++.+|+.++....+..++..            .....+.....+
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~--------~~~~~~a~~nL~~~~~~~~~~~~~~~------------~~~~~~~~~~~f  253 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAV--------KFPFPAASTNLQKALSKALESRDEVK------------TKWGVSDFIKAF  253 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSS--------SBCCHHHHHHHHHHHHHHTTSCCCCC------------SSCCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhhhhhhhhc------------cccccchHHHHH
Confidence            9999999999999999999976        22346788888887765432211100            001123344445


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 004829          647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLG  678 (728)
Q Consensus       647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~  678 (728)
                      ..+..+++....++....+.++.+......+.
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~  285 (497)
T d1ya0a1         254 IKFHGHVYLSKSLEKLSPLREKLEEQFKELLF  285 (497)
T ss_dssp             HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence            55555666667777766666666665555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.2e-14  Score=149.67  Aligned_cols=232  Identities=13%  Similarity=0.067  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 004829          411 AALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGK  490 (728)
Q Consensus       411 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  490 (728)
                      +|+++|++|+.+      .|+.+.++.++|.++..+|++.+|   |++++..        +|..+..+...+.++.  ..
T Consensus         4 eA~q~~~qA~~l------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw~--~~   64 (497)
T d1ya0a1           4 QSAQYLRQAEVL------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLWN--HA   64 (497)
T ss_dssp             HHHHHHHHHHHH------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHHH--HH
T ss_pred             HHHHHHHHHHHc------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHHH--HH
Confidence            789999999887      467777889999999999999876   8888887        7776666544333332  22


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH
Q 004829          491 LRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYY  570 (728)
Q Consensus       491 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~  570 (728)
                      |..+++.+++..+....    ......  ....++.++...+.|+.|+..+++++.+.       +.....+.++|.++.
T Consensus        65 y~~~ie~~r~~~k~~~~----~~~~~~--~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-------~~~~~~~~~lg~~~~  131 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRAN----PNRSEV--QANLSLFLEAASGFYTQLLQELCTVFNVD-------LPCRVKSSQLGIISN  131 (497)
T ss_dssp             THHHHHHHHHHHSCSSC----TTTTHH--HHHHHHHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred             HHHHHHHHHHhcccccC----ccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------hhhHHHHHHhHHHHH
Confidence            55666666665543211    111111  12223444555555666665555555443       333556778999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004829          571 MTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA  650 (728)
Q Consensus       571 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La  650 (728)
                      ..|++++|...+.+++...          ...++..+|.++...|++++|+.+|++|+.+        .|+...++++||
T Consensus       132 ~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~Lg  193 (497)
T d1ya0a1         132 KQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLA  193 (497)
T ss_dssp             -----------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHHH
Confidence            9999999999999988762          2367888999999999999999999999999        888889999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCC
Q 004829          651 GTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGR  700 (728)
Q Consensus       651 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~  700 (728)
                      .+|...|++.+|+.+|.+++.+        .|....++.+|+.++....+
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~--------~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAV--------KFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSS--------SBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999873        24455667777766665443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.5e-12  Score=117.35  Aligned_cols=139  Identities=19%  Similarity=0.173  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 004829          395 DRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAV  474 (728)
Q Consensus       395 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  474 (728)
                      .++..|..+...|+|++|+..|.++         .+..+.+++++|.+|..+|++++|+..|++++++        +|..
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i---------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~~   69 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAV---------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKHL   69 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS---------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhhh
Confidence            4557799999999999999998753         1223568999999999999999999999999999        8899


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCC-------CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNH-------GIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI  547 (728)
Q Consensus       475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  547 (728)
                      +.++.++|.+|..+|++++|+..|++++...+....       .........+++++|.++...|++++|+..+.+++.+
T Consensus        70 ~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999986443210       0011234678899999999999999999999999876


Q ss_pred             Hhc
Q 004829          548 YGK  550 (728)
Q Consensus       548 ~~~  550 (728)
                      .+.
T Consensus       150 ~~~  152 (192)
T d1hh8a_         150 KSE  152 (192)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8.6e-12  Score=114.65  Aligned_cols=134  Identities=16%  Similarity=0.172  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          269 LHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH  348 (728)
Q Consensus       269 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  348 (728)
                      +++.|..+...|+|++|++.|.++.        +.++    .+++++|.+|..+|++++|+.+|++++++        +|
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i~--------~~~~----~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp   67 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAVQ--------DPHS----RICFNIGCMYTILKNMTEAEKAFTRSINR--------DK   67 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--------SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhcC--------CCCH----HHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hh
Confidence            4567999999999999999998753        2232    35899999999999999999999999999        89


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC--------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSP--------ASIEEAADRRLMGLICDSKGDYEAALEHYVLAS  420 (728)
Q Consensus       349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al  420 (728)
                      ..+.+|.++|.+|..+|++++|+..|++++...+.....        .......+++++|.++...|++++|++.+.+++
T Consensus        68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~  147 (192)
T d1hh8a_          68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  147 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999865443211        111224567889999999999999999888876


Q ss_pred             HH
Q 004829          421 MS  422 (728)
Q Consensus       421 ~~  422 (728)
                      .+
T Consensus       148 ~~  149 (192)
T d1hh8a_         148 SM  149 (192)
T ss_dssp             TT
T ss_pred             hc
Confidence            44

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-11  Score=109.64  Aligned_cols=122  Identities=17%  Similarity=0.149  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004829          560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYH  639 (728)
Q Consensus       560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  639 (728)
                      ..+...|..|+..|+|++|+.+|++++++        .+....++.++|.+|...|++++|+..|++++++        +
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------~   74 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D   74 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------c
Confidence            34567899999999999999999999998        4556789999999999999999999999999999        8


Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH--HHhCChhHHH
Q 004829          640 HDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL--KEAGRVRNRK  705 (728)
Q Consensus       640 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~--~~~g~~~~A~  705 (728)
                      |....++..+|.+|..+|++++|+..|++++.+.        |....++..++.+.  ...+.+++|+
T Consensus        75 p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~~~a~  134 (159)
T d1a17a_          75 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAI  134 (159)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999853        44455555555554  3445566666

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.8e-11  Score=110.08  Aligned_cols=138  Identities=14%  Similarity=0.161  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA-------LFGIALNQMGLACVQRYTINEAADLFEEARTIL  631 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  631 (728)
                      +..+...|..++..|+|++|+.+|++++.++.........       ....++.++|.+|..+|++++|+.++++++.+ 
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-   91 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-   91 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc-
Confidence            4556788999999999999999999999986554433222       23457788999999999999999999999999 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004829          632 EKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVT  711 (728)
Q Consensus       632 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  711 (728)
                             +|....+++.+|.+|..+|++++|+..|++++++.        |....+...++.+....+...+.....+..
T Consensus        92 -------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--------P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~  156 (170)
T d1p5qa1          92 -------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--------PNNKAAKTQLAVCQQRIRRQLAREKKLYAN  156 (170)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   88889999999999999999999999999999963        556667778888887777766655333333


Q ss_pred             H
Q 004829          712 F  712 (728)
Q Consensus       712 l  712 (728)
                      +
T Consensus       157 ~  157 (170)
T d1p5qa1         157 M  157 (170)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.5e-11  Score=106.99  Aligned_cols=134  Identities=16%  Similarity=0.107  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGEN  470 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  470 (728)
                      ..+..+...|..++..|+|++|+..|.+++.+      .|....+|.++|.+|..+|++++|+..|++++++        
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------   73 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------   73 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------
Confidence            34556778899999999999999999999987      6778899999999999999999999999999999        


Q ss_pred             CHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHH
Q 004829          471 HPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAI--YQSMNELEQAVKLLNKALKI  547 (728)
Q Consensus       471 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~  547 (728)
                      .|....++..+|.++..+|++++|+..|++++.+.         |....++..++.+  ....+.+++|+........+
T Consensus        74 ~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~---------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~  143 (159)
T d1a17a_          74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK---------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  143 (159)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHh
Confidence            88899999999999999999999999999999993         2223344444444  34445566666554444333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.3e-11  Score=103.28  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829          562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD  641 (728)
Q Consensus       562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  641 (728)
                      +...|..++..|++++|+.+|++++..        .+..+.++..+|.+|..+|++++|+..|.+++.+        +|.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~   69 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPD   69 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------ccc
Confidence            457899999999999999999999988        4555789999999999999999999999999999        888


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 004829          642 TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELL  695 (728)
Q Consensus       642 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~  695 (728)
                      ...+++++|.++..+|++++|+..|++++++        .|....++..++.+.
T Consensus        70 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  115 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHh
Confidence            8899999999999999999999999999984        366666666666553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.6e-11  Score=101.36  Aligned_cols=112  Identities=14%  Similarity=0.173  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcH
Q 004829          519 SGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSA  598 (728)
Q Consensus       519 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  598 (728)
                      .-+...|..++..|++++|+.+|.+++++.+..       +.++..+|.+|..+|++++|+..|.+++.+        .+
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p   68 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KP   68 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-------hhhhhcccccccccccccccchhhhhHHHh--------cc
Confidence            345678999999999999999999999987666       678999999999999999999999999998        34


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004829          599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTY  653 (728)
Q Consensus       599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~  653 (728)
                      ....+++++|.++..+|++++|+..|++++++        .|....++..++.+.
T Consensus        69 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          69 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME  115 (117)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHh
Confidence            45689999999999999999999999999998        777777777777664

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.25  E-value=8.7e-11  Score=105.30  Aligned_cols=141  Identities=14%  Similarity=0.180  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKK-------SALFGIALNQMGLACVQRYTINEAADLFEEARTIL  631 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  631 (728)
                      +..+...|..++..|+|.+|+.+|.+|+.++.......       ......++.++|.||..+|++++|+.++++++.+ 
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence            34566789999999999999999999998865433322       1224567888999999999999999999999999 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004829          632 EKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVT  711 (728)
Q Consensus       632 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~  711 (728)
                             +|....+++.+|.+|..+|++++|+..|++++.+        +|+...+...++.+....+...+...+.+..
T Consensus        94 -------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~  158 (168)
T d1kt1a1          94 -------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRRTYAN  158 (168)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                   8899999999999999999999999999999984        4667778888888888877776655455555


Q ss_pred             HHhh
Q 004829          712 FLDS  715 (728)
Q Consensus       712 ll~~  715 (728)
                      +++.
T Consensus       159 ~f~~  162 (168)
T d1kt1a1         159 MFKK  162 (168)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            5543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-10  Score=104.60  Aligned_cols=130  Identities=11%  Similarity=0.054  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS--------TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                      .+..+...|..++..|+|++|+..|++++.+.+.......        ....++.++|.+|..+|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            4667788999999999999999999999999887654433        23456788999999999999999999999998


Q ss_pred             HHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHH
Q 004829          589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDA  662 (728)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A  662 (728)
                              .|....+++.+|.+|..+|++++|+..|++++++        +|+...+...++.+....+...+.
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                    4445789999999999999999999999999999        777777888888888776665544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.24  E-value=1.6e-10  Score=102.18  Aligned_cols=140  Identities=16%  Similarity=0.161  Sum_probs=110.1

Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004829          559 AGIEAQM--GVMYYMTGNYSDSYNTLKSAISKFRTSGEKK----SALFGIALNQMGLACVQRYTINEAADLFEEARTILE  632 (728)
Q Consensus       559 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  632 (728)
                      +.++..+  |..++..|+|++|+..|++++++.+...+..    ....+.++.++|.+|..+|++++|+..+++++.+..
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3344444  7888999999999999999999987765432    233567899999999999999999999999999988


Q ss_pred             HhcCC---CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhC
Q 004829          633 KEYGP---YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAG  699 (728)
Q Consensus       633 ~~~~~---~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g  699 (728)
                      +....   ..+....+++++|.+|..+|++++|+..|++++++..+..+ ..+........++.-+.++|
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~-~~~~~~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDRIAQLG  155 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-hHHHHHHHHHHHHHHHHHcC
Confidence            76443   23455668999999999999999999999999999877655 44555556666665555443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.22  E-value=4.4e-10  Score=99.20  Aligned_cols=138  Identities=15%  Similarity=0.132  Sum_probs=108.4

Q ss_pred             HHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          517 IASGLIDI--AAIYQSMNELEQAVKLLNKALKIYGKTPGQQS-----TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKF  589 (728)
Q Consensus       517 ~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  589 (728)
                      .+.++..+  |..++..|+|++|+..|++++++.+..+....     ..+.++.++|.+|..+|++++|+..+++++.+.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            44555555  78889999999999999999999998755432     346788999999999999999999999999998


Q ss_pred             HHhCCCC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004829          590 RTSGEKK---SALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA  655 (728)
Q Consensus       590 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~  655 (728)
                      +......   .+....+++++|.+|..+|++++|+..|++++++..+..+. .+........++..+.+
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~-~~~~~~~~~~~~~~l~~  153 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-TPGKERMMEVAIDRIAQ  153 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC-CTTHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch-HHHHHHHHHHHHHHHHH
Confidence            8765443   23456689999999999999999999999999998776543 23334444445544443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.21  E-value=2.2e-09  Score=104.07  Aligned_cols=222  Identities=16%  Similarity=0.207  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChhHHHHHHHHhhhhhh
Q 004829          222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCS----LGQYNEAIPVLERSVEIPV  297 (728)
Q Consensus       222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~  297 (728)
                      +..++.+|..++..| |+++|+.+|++|.+.           ..+.+++.||.+|..    ..++..|..+++.+.... 
T Consensus         2 p~~~~~lG~~~~~~~-d~~~A~~~~~kAa~~-----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-   68 (265)
T d1ouva_           2 PKELVGLGAKSYKEK-DFTQAKKYFEKACDL-----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-   68 (265)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-
Confidence            568899999999997 999999999999763           125678889999997    678999999999987642 


Q ss_pred             hhcCCchhHhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----hCCHHH
Q 004829          298 LEDGQDHALAKFAGCMQLGDTYAM----LGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ----SLQFDE  369 (728)
Q Consensus       298 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~  369 (728)
                            ++.    +...+|.++..    ..+.+.|..+++++...        .+  ..+...++..+..    ......
T Consensus        69 ------~~~----a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~--------g~--~~a~~~l~~~~~~~~~~~~~~~~  128 (265)
T d1ouva_          69 ------YSN----GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------KY--AEGCASLGGIYHDGKVVTRDFKK  128 (265)
T ss_dssp             ------CHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ------ccc----hhhccccccccccccchhhHHHHHHHhhhhhh--------hh--hhHHHhhcccccCCCcccchhHH
Confidence                  222    36777877765    46889999999988765        22  3445556666654    345666


Q ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 004829          370 AEKICQMALDIHRENTSPASIEEAADRRLMGLICDS----KGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS  445 (728)
Q Consensus       370 A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  445 (728)
                      |...+.+......          ...+..+|.++..    ..+...+..++..+..        .....+++++|.+|..
T Consensus       129 a~~~~~~~~~~~~----------~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--------~g~~~A~~~lg~~y~~  190 (265)
T d1ouva_         129 AVEYFTKACDLND----------GDGCTILGSLYDAGRGTPKDLKKALASYDKACD--------LKDSPGCFNAGNMYHH  190 (265)
T ss_dssp             HHHHHHHHHHTTC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccc----------cchhhhhhhhhccCCCcccccccchhhhhcccc--------ccccccccchhhhccc
Confidence            6666665543211          2357788988886    4567778888777653        2346788999999987


Q ss_pred             ----hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004829          446 ----LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK----IGKLRDSKSYCENALKI  504 (728)
Q Consensus       446 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  504 (728)
                          ..++++|+.+|+++.+.       ++   ..++++||.+|..    ..++.+|+.+|++|...
T Consensus       191 g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         191 GEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             CcccccchhhhhhhHhhhhcc-------cC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence                67899999999999775       23   4678899999986    44899999999999887

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.5e-10  Score=94.72  Aligned_cols=103  Identities=16%  Similarity=0.205  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829          311 GCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASI  390 (728)
Q Consensus       311 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  390 (728)
                      .+..+|..|+..|+|++|+.+|++++++        +|....++.++|.+|..+|+|++|+..+++++++.+.... ...
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~-~~~   76 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-DYR   76 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH-HHH
Confidence            4778999999999999999999999999        7888899999999999999999999999999999988775 345


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          391 EEAADRRLMGLICDSKGDYEAALEHYVLASMS  422 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~  422 (728)
                      ..+.++..+|.++...+++++|+.+|.+++..
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            66788999999999999999999999998754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.20  E-value=7.4e-11  Score=103.85  Aligned_cols=123  Identities=12%  Similarity=0.081  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004829          560 GIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSAL--------FGIALNQMGLACVQRYTINEAADLFEEARTIL  631 (728)
Q Consensus       560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  631 (728)
                      ..+...|..++..|+|.+|+..|.+++.++..........        ...++.++|.+|..+|++++|+.++++++.+ 
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~-   96 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-   96 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc-
Confidence            3456789999999999999999999998765544332221        2357889999999999999999999999999 


Q ss_pred             HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829          632 EKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA  698 (728)
Q Consensus       632 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  698 (728)
                             +|....+++.+|.+|..+|++++|+.+|++++++.        |....+...+..+..++
T Consensus        97 -------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--------P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          97 -------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--------PNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             -------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHH
T ss_pred             -------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHH
Confidence                   89999999999999999999999999999999964        66666677777666544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=7.9e-11  Score=109.24  Aligned_cols=106  Identities=19%  Similarity=0.233  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCC
Q 004829          433 ASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGI  512 (728)
Q Consensus       433 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  512 (728)
                      +..+...|..++..|+|++|+.+|++++.+        .|..+.++.++|.+|..+|++++|+.+|++++++        
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence            345678899999999999999999999999        8888999999999999999999999999999987        


Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004829          513 PSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQ  555 (728)
Q Consensus       513 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  555 (728)
                       .|....+|.++|.+|..+|++++|+..|++++.+.+......
T Consensus        68 -~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence             455678899999999999999999999999999998764433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.19  E-value=2.1e-09  Score=104.27  Aligned_cols=221  Identities=18%  Similarity=0.265  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHH
Q 004829          267 MCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAM----LGQIENSILCYTAGLEIQRQV  342 (728)
Q Consensus       267 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  342 (728)
                      .+++.||..++..+++.+|+.+|+++.+..       +    ..+++.||.+|..    ..++..|..+++.+...    
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-------~----~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~----   67 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK-------E----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----   67 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-------C----HHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----
Confidence            468899999999999999999999997642       2    2358899999998    66999999999987755    


Q ss_pred             cCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHH
Q 004829          343 LGETDHRVGETCRYVAEAHVQ----SLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDS----KGDYEAALE  414 (728)
Q Consensus       343 ~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~  414 (728)
                            ....+...+|.++..    ..+.+.|...++.+.....          ..+...++..+..    ......|..
T Consensus        68 ------~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~----------~~a~~~l~~~~~~~~~~~~~~~~a~~  131 (265)
T d1ouva_          68 ------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY----------AEGCASLGGIYHDGKVVTRDFKKAVE  131 (265)
T ss_dssp             ------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             ------cccchhhccccccccccccchhhHHHHHHHhhhhhhhh----------hhHHHhhcccccCCCcccchhHHHHH
Confidence                  233556677777765    4588899999988875321          1235566666664    456777777


Q ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---
Q 004829          415 HYVLASMSMAANGHELDVASIDCSIGDAYLS----LARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHK---  487 (728)
Q Consensus       415 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---  487 (728)
                      .+.+...        ......+..+|.+|..    ..+...+..+++.+.+.          ....+++++|.+|..   
T Consensus       132 ~~~~~~~--------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~~g~~  193 (265)
T d1ouva_         132 YFTKACD--------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHHGEG  193 (265)
T ss_dssp             HHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTCS
T ss_pred             Hhhhhhc--------ccccchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhcccCcc
Confidence            7776542        3345678889999987    45666777777777653          235678899999987   


Q ss_pred             -cCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 004829          488 -IGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQS----MNELEQAVKLLNKALKI  547 (728)
Q Consensus       488 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  547 (728)
                       ..++++|+.+|+++.+.-           ...++++||.+|..    ..++++|+.+|++|...
T Consensus       194 ~~~d~~~A~~~~~~aa~~g-----------~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         194 ATKNFKEALARYSKACELE-----------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             SCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             cccchhhhhhhHhhhhccc-----------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence             678999999999997761           24678899999986    44899999999999876

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=7.1e-10  Score=94.03  Aligned_cols=105  Identities=14%  Similarity=0.188  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829          518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS  597 (728)
Q Consensus       518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  597 (728)
                      +..+..+|..++..|+|++|+.+|.+++++.+..       ..++.++|.+|..+|+|++|+..+++++++....... .
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~-~   75 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED-Y   75 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC-H
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH-H
Confidence            4567789999999999999999999999996654       5788999999999999999999999999987776544 4


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          598 ALFGIALNQMGLACVQRYTINEAADLFEEARTI  630 (728)
Q Consensus       598 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  630 (728)
                      ...+.++..+|.++...+++++|+.+|++++..
T Consensus        76 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            556789999999999999999999999999886

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.18  E-value=1.3e-10  Score=102.14  Aligned_cols=124  Identities=14%  Similarity=0.165  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCc---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004829          517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST---------IAGIEAQMGVMYYMTGNYSDSYNTLKSAIS  587 (728)
Q Consensus       517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  587 (728)
                      .+..+...|..++..|+|.+|+..|++++.+.+........         ...++.++|.+|..+|++++|+.+++++++
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            45567788999999999999999999999988766443332         235678999999999999999999999998


Q ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc
Q 004829          588 KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~  656 (728)
                      +        .|....+++.+|.++..+|++++|+..|++++++        +|....+...++.+..++
T Consensus        96 ~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          96 I--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHH
T ss_pred             c--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence            8        4555789999999999999999999999999999        777777777777776544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=2.1e-11  Score=113.22  Aligned_cols=102  Identities=16%  Similarity=0.165  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                      +..+...|..|+..|+|++|+.+|++++.+        .|..+.++.++|.+|...|++++|+.+|++|+.+        
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence            345668899999999999999999999998        3445789999999999999999999999999998        


Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 004829          639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK  676 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~  676 (728)
                      +|....+++++|.+|..+|++++|+..|++++.+....
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            88889999999999999999999999999999987543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.17  E-value=2.5e-10  Score=102.49  Aligned_cols=131  Identities=11%  Similarity=0.086  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcC-------CCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhh
Q 004829          222 GPFLLKQTREMISSGENPQKALELAKRAMKSFEICANG-------KPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVE  294 (728)
Q Consensus       222 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  294 (728)
                      +..+...|..++..| +|.+|+..|.+|+.+.+.....       .-.|..+.++.++|.+|..+|+|++|+..|+++++
T Consensus        27 a~~~~~~~~~~~~~~-~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQ-NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            445678899999997 9999999999999876544221       11356778899999999999999999999999998


Q ss_pred             hhhhhcCCchhHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHH
Q 004829          295 IPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEA  370 (728)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  370 (728)
                      +.     +.++.    +++.+|.+|..+|++++|+..|++++++        +|....+...++.++.......++
T Consensus       106 ~~-----p~~~~----a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         106 ID-----PSNTK----ALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             TC-----TTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hh-----hhhhh----HHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            75     44443    5999999999999999999999999999        677777787787777665544443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.17  E-value=3.5e-10  Score=101.27  Aligned_cols=128  Identities=13%  Similarity=0.077  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          517 IASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQS--------TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK  588 (728)
Q Consensus       517 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  588 (728)
                      .+..+...|..++..|+|.+|+.+|.+++.+.+.......        ....++.++|.+|..+|++++|+.++++++.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            4567788999999999999999999999999876644332        24566888999999999999999999999988


Q ss_pred             HHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004829          589 FRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRID  660 (728)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~  660 (728)
                              .+....+++.+|.++..+|++++|+..|++++.+        +|+...+...++.+....+.+.
T Consensus        94 --------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~  149 (168)
T d1kt1a1          94 --------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHN  149 (168)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             --------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHH
Confidence                    4455789999999999999999999999999998        7777778888888877666554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.15  E-value=9.7e-11  Score=96.86  Aligned_cols=93  Identities=15%  Similarity=0.114  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004829          562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHD  641 (728)
Q Consensus       562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  641 (728)
                      .+.+|.++...|++++|+..|++++..        .+....++..+|.++...|++++|+.+|++++++        +|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   82 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK   82 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------ccc
Confidence            467899999999999999999999988        4445789999999999999999999999999999        899


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004829          642 TLGVYSNLAGTYDAMGRIDDAIEILEYVV  670 (728)
Q Consensus       642 ~~~~~~~La~~~~~~g~~~~A~~~~~~al  670 (728)
                      ...++..||.+|..+|++++|++++++.+
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.14  E-value=1.9e-10  Score=103.23  Aligned_cols=128  Identities=13%  Similarity=0.152  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004829          562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE--------KKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEK  633 (728)
Q Consensus       562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  633 (728)
                      +...|..++..|+|.+|+..|.+++........        ...+....++.++|.++..+|++++|+..|.+++++   
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---  106 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI---  106 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh---
Confidence            456789999999999999999999987543211        113445678899999999999999999999999998   


Q ss_pred             hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829          634 EYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       634 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                           +|....+++.+|.+|..+|++++|+..|++++++.        |....+...|+.++.......++.
T Consensus       107 -----~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--------p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         107 -----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence                 88889999999999999999999999999999963        555667777787777666555544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=9.9e-10  Score=109.27  Aligned_cols=228  Identities=9%  Similarity=0.041  Sum_probs=167.2

Q ss_pred             hHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHHHH-------HHhC-------CHHHHHHHHHHHHHHHHHHcCCCCh
Q 004829          283 NEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTY-------AMLG-------QIENSILCYTAGLEIQRQVLGETDH  348 (728)
Q Consensus       283 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~-------~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~  348 (728)
                      ..+..+|++|+...     +.++..    |+..+..+       ...|       .+++|...|++++..       ..|
T Consensus        33 ~Rv~~vyerAl~~~-----~~~~~l----W~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-------~~p   96 (308)
T d2onda1          33 KRVMFAYEQCLLVL-----GHHPDI----WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLK   96 (308)
T ss_dssp             HHHHHHHHHHHHHH-----TTCHHH----HHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-------TTT
T ss_pred             HHHHHHHHHHHHHC-----CCCHHH----HHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH-------cCC
Confidence            44666788888765     333332    44444332       2223       345566666666543       245


Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 004829          349 RVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGH  428 (728)
Q Consensus       349 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  428 (728)
                      .....|..++.++...|+++.|...|++++...+...       ..++..++......|+++.|...|.+++..      
T Consensus        97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~-------~~~w~~~~~~~~~~~~~~~ar~i~~~al~~------  163 (308)
T d2onda1          97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-------TLVYIQYMKFARRAEGIKSGRMIFKKARED------  163 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTS------
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------
Confidence            5667888899999999999999999999986543221       234677888899999999999999998743      


Q ss_pred             ChhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC
Q 004829          429 ELDVASIDCSIGDAYL-SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGK  507 (728)
Q Consensus       429 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  507 (728)
                      .|.....+...|.... ..|+.+.|...|++++..        .|.....+...+..+...|+++.|..+|++++.....
T Consensus       164 ~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            3444556667776654 468999999999999987        5666788889999999999999999999999987422


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829          508 PNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP  552 (728)
Q Consensus       508 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  552 (728)
                           ++......|..........|+.+.+..+++++.++++...
T Consensus       236 -----~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         236 -----PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             -----CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             -----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence                 1223345667777777888999999999999999987663

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.3e-09  Score=108.51  Aligned_cols=228  Identities=11%  Similarity=0.023  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--------------HcCChHHHHHHHHHHHHHHcCCCCCCCcH
Q 004829          450 DEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH--------------KIGKLRDSKSYCENALKIYGKPNHGIPSE  515 (728)
Q Consensus       450 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~  515 (728)
                      ..+...|++|+..        .|....++...+..+.              ..+..++|...|++++...        .+
T Consensus        33 ~Rv~~vyerAl~~--------~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~--------~p   96 (308)
T d2onda1          33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LK   96 (308)
T ss_dssp             HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TT
T ss_pred             HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHc--------CC
Confidence            4456677888776        3333444554444332              2234567778888887642        22


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004829          516 EIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK  595 (728)
Q Consensus       516 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  595 (728)
                      .....+...+.++..+|+++.|...|++++...+..      ...++..++.+....|+++.|..+|++++...      
T Consensus        97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~------~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~------  164 (308)
T d2onda1          97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------  164 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC------THHHHHHHHHHHHHHHCHHHHHHHHHHHHTST------
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------
Confidence            334578888999999999999999999998653322      23456778889999999999999999998651      


Q ss_pred             CcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004829          596 KSALFGIALNQMGLACV-QRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMRE  674 (728)
Q Consensus       596 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~  674 (728)
                        +.....+...|.... ..|+.+.|..+|++++..        .|.....+...+..+...|++++|..+|++++... 
T Consensus       165 --~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~-  233 (308)
T d2onda1         165 --RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-  233 (308)
T ss_dssp             --TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-
T ss_pred             --CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-
Confidence              112345566666543 468999999999999998        66667788999999999999999999999998843 


Q ss_pred             HHcCCCChH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccccc
Q 004829          675 EKLGTANPD-VEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQNLK  721 (728)
Q Consensus       675 ~~~~~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~~~  721 (728)
                          +.+|. ....+..........|+.+.+. ...+.+.+..|....
T Consensus       234 ----~~~~~~~~~iw~~~~~fE~~~G~~~~~~-~~~~r~~~~~~~~~~  276 (308)
T d2onda1         234 ----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAFREEYE  276 (308)
T ss_dssp             ----SSCGGGCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHTTTTTS
T ss_pred             ----CCChHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCccccc
Confidence                23443 3456667777788889999999 888888777776543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.10  E-value=2.2e-10  Score=94.64  Aligned_cols=94  Identities=15%  Similarity=0.050  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCc
Q 004829          435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPS  514 (728)
Q Consensus       435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  514 (728)
                      ..+.+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+.+|++++++         .
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---------~   80 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---------D   80 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc---------c
Confidence            4578899999999999999999999998        8888999999999999999999999999999999         4


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004829          515 EEIASGLIDIAAIYQSMNELEQAVKLLNKAL  545 (728)
Q Consensus       515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  545 (728)
                      |....++..+|.+|..+|++++|++.+++.+
T Consensus        81 p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          81 PKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            5567899999999999999999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.9e-10  Score=95.00  Aligned_cols=113  Identities=11%  Similarity=0.005  Sum_probs=90.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCh
Q 004829          564 QMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRY---TINEAADLFEEARTILEKEYGPYHH  640 (728)
Q Consensus       564 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~  640 (728)
                      .++..+...+++++|.+.|++++.+        .+....+++++|.++...+   ++++|+.+|++++..      ...|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~   69 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKE   69 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCc
Confidence            5677888999999999999999998        4445689999999998755   456788888888875      1124


Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Q 004829          641 DTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA  698 (728)
Q Consensus       641 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~  698 (728)
                      ....++++||.+|..+|++++|+.+|++++++.        |+...+...+..+..+.
T Consensus        70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~--------P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE--------PQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHH
Confidence            446799999999999999999999999999963        66667776666665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=9.5e-10  Score=91.82  Aligned_cols=113  Identities=7%  Similarity=-0.093  Sum_probs=91.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCCcH
Q 004829          522 IDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTG---NYSDSYNTLKSAISKFRTSGEKKSA  598 (728)
Q Consensus       522 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~  598 (728)
                      ..++..+...+++++|.+.|++++.+.+..       ..+++++|.++...+   ++++|+.+|++++..      ...+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~-------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~   69 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS-------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKE   69 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCc
Confidence            356778889999999999999999987766       678899999998755   445688888877653      1123


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004829          599 LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA  655 (728)
Q Consensus       599 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~  655 (728)
                      ....+++++|.+|...|++++|+.+|++++++        +|+...+...++.+..+
T Consensus        70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHH
Confidence            34568999999999999999999999999999        88877777777766554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.2e-08  Score=80.95  Aligned_cols=87  Identities=8%  Similarity=0.045  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004829          518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKS  597 (728)
Q Consensus       518 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  597 (728)
                      +..++.+|.+++..|+|.+|+.+|++|+++.+.........+.++.++|.++..+|++++|+.+|++++++        .
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------D   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------C
Confidence            44578999999999999999999999999999876777788899999999999999999999999999998        4


Q ss_pred             HHHHHHHHHHHHHHH
Q 004829          598 ALFGIALNQMGLACV  612 (728)
Q Consensus       598 ~~~~~~~~~la~~~~  612 (728)
                      |....++.+++.+..
T Consensus        77 P~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          77 PEHQRANGNLKYFEY   91 (95)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            444578888766544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=9.7e-09  Score=81.45  Aligned_cols=89  Identities=15%  Similarity=0.087  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004829          559 AGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY  638 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  638 (728)
                      +.-++.+|.+++..|+|.+|+.+|++|+++........ ...+.++.++|.++...|++++|+.+|++++++        
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~-~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST-IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS-SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC-ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence            34567999999999999999999999999887654432 345789999999999999999999999999999        


Q ss_pred             ChhHHHHHHHHHHHHHHc
Q 004829          639 HHDTLGVYSNLAGTYDAM  656 (728)
Q Consensus       639 ~~~~~~~~~~La~~~~~~  656 (728)
                      +|+...++.+++.+...+
T Consensus        76 ~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          76 DPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             CTTCHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHh
Confidence            888888999987765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=3.1e-09  Score=92.05  Aligned_cols=116  Identities=16%  Similarity=0.127  Sum_probs=80.1

Q ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 004829          318 TYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRR  397 (728)
Q Consensus       318 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~  397 (728)
                      .|.+++.|++|+..|++++++        +|..+.++..+|.++...+++..+.+.                        
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~------------------------   53 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDA------------------------   53 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHH------------------------
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHH------------------------
Confidence            355677899999999999999        899999999999998876555433221                        


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHh
Q 004829          398 LMGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLA-----------RFDEAIFSYHKALTAFKSA  466 (728)
Q Consensus       398 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~  466 (728)
                              .+.+++|+..|++++.+      +|....+++++|.+|..+|           .+.+|+.+|++++++    
T Consensus        54 --------~~~~~~Ai~~~~kAl~l------~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l----  115 (145)
T d1zu2a1          54 --------KQMIQEAITKFEEALLI------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE----  115 (145)
T ss_dssp             --------HHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             --------HHHHHHHHHHHHHHHHh------cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc----
Confidence                    11234555555555544      4455555666666655544           468899999999998    


Q ss_pred             cCCCCHHHHHHHHHHHHHHHH
Q 004829          467 KGENHPAVASVFVRLADLYHK  487 (728)
Q Consensus       467 ~~~~~~~~~~~~~~la~~~~~  487 (728)
                          .|....++..|+.+...
T Consensus       116 ----~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1         116 ----QPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             ----CTTCHHHHHHHHHHHTH
T ss_pred             ----CCCHHHHHHHHHHHHHH
Confidence                78777777777776533

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.81  E-value=2.4e-09  Score=92.71  Aligned_cols=114  Identities=17%  Similarity=0.110  Sum_probs=91.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhcCC
Q 004829          568 MYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQR----------YTINEAADLFEEARTILEKEYGP  637 (728)
Q Consensus       568 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~  637 (728)
                      .|.+++.|++|+..|++++++        .|..+.++.++|.++...          +.+++|+..|++++++       
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------   70 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------   70 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence            356678899999999999998        566678999999999854          4568899999999999       


Q ss_pred             CChhHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHH
Q 004829          638 YHHDTLGVYSNLAGTYDAMGR-----------IDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK  705 (728)
Q Consensus       638 ~~~~~~~~~~~La~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~  705 (728)
                       +|....+++++|.+|..+|+           +++|+.+|++++++        +|.....+..|+.+....+.+.++.
T Consensus        71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             89999999999999988764           57777788887774        3667777888887766555555443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.64  E-value=2.8e-07  Score=82.30  Aligned_cols=132  Identities=14%  Similarity=0.013  Sum_probs=103.3

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004829          514 SEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSG  593 (728)
Q Consensus       514 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  593 (728)
                      +...+..+...|......|++++|...|.+|+.+++..+-...              ..+.+-  .   .....+     
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------------~~~~w~--~---~~r~~l-----   62 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------------RDFQFV--E---PFATAL-----   62 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------------TTSTTH--H---HHHHHH-----
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------------cchHHH--H---HHHHHH-----
Confidence            3456778899999999999999999999999988764321110              001111  1   111111     


Q ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          594 EKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       594 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                         ......++..++.++...|++++|+.++++++.+        +|....++..++.+|...|++.+|+..|+++....
T Consensus        63 ---~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L  131 (179)
T d2ff4a2          63 ---VEDKVLAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  131 (179)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence               1224567889999999999999999999999999        99999999999999999999999999999999998


Q ss_pred             HHHcCCC
Q 004829          674 EEKLGTA  680 (728)
Q Consensus       674 ~~~~~~~  680 (728)
                      .+-+|..
T Consensus       132 ~~eLG~~  138 (179)
T d2ff4a2         132 ADDLGID  138 (179)
T ss_dssp             HHHHSCC
T ss_pred             HHHhCCC
Confidence            8888743

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=1.4e-06  Score=77.69  Aligned_cols=114  Identities=11%  Similarity=-0.059  Sum_probs=95.4

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCch-------------hHhHHHHHHHHHHHHHHhCCHHHHH
Q 004829          263 LEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDH-------------ALAKFAGCMQLGDTYAMLGQIENSI  329 (728)
Q Consensus       263 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~  329 (728)
                      ......+...|......|++++|+..|.+|+.+.+.....+.             ....+.++..++.++...|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            345667888999999999999999999999998642211111             0113456889999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q 004829          330 LCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHREN  384 (728)
Q Consensus       330 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  384 (728)
                      .++++++.+        +|....+|..++.+|...|++.+|+..|+++.....+.
T Consensus        88 ~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~e  134 (179)
T d2ff4a2          88 AELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD  134 (179)
T ss_dssp             HHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            999999999        89999999999999999999999999999998876553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.37  E-value=2.9e-07  Score=87.79  Aligned_cols=129  Identities=9%  Similarity=-0.068  Sum_probs=106.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004829          567 VMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY  646 (728)
Q Consensus       567 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  646 (728)
                      .-.+..|++++|+..|+++++.        .|....++..+|.+++..|++++|+..|++++++        +|+...++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~~   67 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGA   67 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence            3456789999999999999987        5556789999999999999999999999999999        89988899


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhcccc
Q 004829          647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDSNSQN  719 (728)
Q Consensus       647 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~~~~~  719 (728)
                      ..++.++...+..+++...+.+..       -..+|.....+...+.++...|++++|. ..++.+.+..|..
T Consensus        68 ~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~-~~~~~a~e~~p~~  132 (264)
T d1zbpa1          68 SQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELRQEK  132 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCCC
T ss_pred             HHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhcCCCC
Confidence            899988876666555443332221       1345777788888999999999999999 8888888888764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.22  E-value=7.6e-07  Score=84.77  Aligned_cols=129  Identities=16%  Similarity=0.062  Sum_probs=103.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004829          402 ICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRL  481 (728)
Q Consensus       402 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  481 (728)
                      -....|++++|+..|+++++.      .|....++..+|.+|...|++++|+..|++++++        .|....++..+
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~~~~l   70 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKA------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGASQL   70 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHHHHH
Confidence            456789999999999999866      7888999999999999999999999999999999        88888888888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 004829          482 ADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTP  552 (728)
Q Consensus       482 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  552 (728)
                      +.++...+...++...+....      .  ...+.....+...+.++...|++++|...+.++.+..+...
T Consensus        71 ~~ll~a~~~~~~a~~~~~~~~------~--~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          71 RHLVKAAQARKDFAQGAATAK------V--LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HHHHHHHHHHHHHTTSCCCEE------C--CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHhccccHHHHHHhhhhh------c--ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            888876655544332221111      0  11334556777889999999999999999999999877653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.72  E-value=9.2e-05  Score=61.91  Aligned_cols=109  Identities=17%  Similarity=0.220  Sum_probs=83.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHHhhhhhhhhcCCchhHhHHHHHHHHHH
Q 004829          238 NPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGD  317 (728)
Q Consensus       238 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~  317 (728)
                      |+++|+.+|+++.+.      +.     ..+++.++.  ....++++|+.+|+++.+..       ++    .+++.||.
T Consensus         8 d~~~A~~~~~kaa~~------g~-----~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g-------~~----~a~~~Lg~   63 (133)
T d1klxa_           8 DLKKAIQYYVKACEL------NE-----MFGCLSLVS--NSQINKQKLFQYLSKACELN-------SG----NGCRFLGD   63 (133)
T ss_dssp             HHHHHHHHHHHHHHT------TC-----TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT-------CH----HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC------CC-----hhhhhhhcc--ccccCHHHHHHHHhhhhccc-------ch----hhhhhHHH
Confidence            789999999999763      22     223445554  34578999999999987642       22    34889999


Q ss_pred             HHHH----hCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 004829          318 TYAM----LGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ----SLQFDEAEKICQMALDI  380 (728)
Q Consensus       318 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  380 (728)
                      +|..    ..++++|+.+|+++.+.          ....+.+.||.+|..    ..++.+|+.+|+++.+.
T Consensus        64 ~y~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          64 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            9986    45799999999999866          335678899999887    46899999999998764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.57  E-value=0.00024  Score=59.24  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=83.8

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 004829          532 NELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLAC  611 (728)
Q Consensus       532 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  611 (728)
                      .++++|+.+|+++.+.     +..    .....|+.  ....++++|+.+|+++.+.       .   ...+.+.||.+|
T Consensus         7 kd~~~A~~~~~kaa~~-----g~~----~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g---~~~a~~~Lg~~y   65 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL-----NEM----FGCLSLVS--NSQINKQKLFQYLSKACEL-------N---SGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHHT-----TCT----THHHHHHT--CTTSCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHC-----CCh----hhhhhhcc--ccccCHHHHHHHHhhhhcc-------c---chhhhhhHHHhh
Confidence            4788999999998764     222    13334443  3457899999999998764       1   246788899998


Q ss_pred             HH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004829          612 VQ----RYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA----MGRIDDAIEILEYVVGM  672 (728)
Q Consensus       612 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~al~~  672 (728)
                      ..    ..++++|+.+|+++.+.          ....+.+.||.+|..    ..++.+|+.+|+++.+.
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            86    45799999999999875          224478999999987    56899999999999883

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.0022  Score=51.13  Aligned_cols=65  Identities=5%  Similarity=-0.061  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004829          601 GIALNQMGLACVQRY---TINEAADLFEEARTILEKEYGPYHHD-TLGVYSNLAGTYDAMGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       601 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~  673 (728)
                      ..+.++.|+++....   +.++|+.+|++++..        +|. ..++++.||..|.++|+|++|..++++++++.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            467788888888765   467888888888765        554 46799999999999999999999999999964

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.0023  Score=51.06  Aligned_cols=76  Identities=7%  Similarity=-0.074  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004829          559 AGIEAQMGVMYYMTGN---YSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEY  635 (728)
Q Consensus       559 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  635 (728)
                      ..+.++.|+++.+..+   .++|+.++++++..       .+.....+++.||..|.++|+|++|..++++++++     
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i-----  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-----  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc-----
Confidence            4677888999987654   45777777777654       23334579999999999999999999999999999     


Q ss_pred             CCCChhHHHHHHHH
Q 004829          636 GPYHHDTLGVYSNL  649 (728)
Q Consensus       636 ~~~~~~~~~~~~~L  649 (728)
                         .|+...+....
T Consensus       103 ---eP~n~qA~~L~  113 (124)
T d2pqrb1         103 ---ERNNKQVGALK  113 (124)
T ss_dssp             ---CTTCHHHHHHH
T ss_pred             ---CCCcHHHHHHH
Confidence               77766554433

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=1.1  Score=44.56  Aligned_cols=197  Identities=12%  Similarity=-0.045  Sum_probs=111.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHH
Q 004829          482 ADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGI  561 (728)
Q Consensus       482 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  561 (728)
                      +..-....+.+.|...+.........     ...........++..+...+..+.|...+......     ....  ...
T Consensus       221 ~l~rla~~d~~~a~~~l~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-----~~~~--~~~  288 (450)
T d1qsaa1         221 AFASVARQDAENARLMIPSLAQAQQL-----NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-----SQST--SLI  288 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-----CCCH--HHH
T ss_pred             HHHHHhccChhHHHHHHHhhhhcccc-----cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-----ccch--HHH
Confidence            33334445777777777765554211     23334444444444445556666666665544322     1111  111


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------HHHh
Q 004829          562 EAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTI-------LEKE  634 (728)
Q Consensus       562 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~  634 (728)
                      ...++ ..+..+++..+...+...-        ..........+.+|..+...|+.++|..+|..+..-       ....
T Consensus       289 ~w~~~-~al~~~~~~~~~~~~~~l~--------~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~  359 (450)
T d1qsaa1         289 ERRVR-MALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQR  359 (450)
T ss_dssp             HHHHH-HHHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred             HHHHH-HHHHcCChHHHHHHHHhcC--------cccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHH
Confidence            22223 3445677777666654331        122333567788888888888888888888876541       1111


Q ss_pred             cCC-------------CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCh
Q 004829          635 YGP-------------YHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRV  701 (728)
Q Consensus       635 ~~~-------------~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~  701 (728)
                      +|.             ........-...+..+...|+...|...+..++.       ...+   .....++.+..+.|.+
T Consensus       360 Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~-------~~~~---~~~~~la~lA~~~g~~  429 (450)
T d1qsaa1         360 IGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK-------SKSK---TEQAQLARYAFNNQWW  429 (450)
T ss_dssp             TTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCCH---HHHHHHHHHHHHTTCH
T ss_pred             cCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh-------CCCH---HHHHHHHHHHHHCCCh
Confidence            111             0001111234567788899999999998877654       1222   3455778999999999


Q ss_pred             hHHHHHHHH
Q 004829          702 RNRKSRSLV  710 (728)
Q Consensus       702 ~~A~~~~l~  710 (728)
                      +.|+ ....
T Consensus       430 ~~aI-~a~~  437 (450)
T d1qsaa1         430 DLSV-QATI  437 (450)
T ss_dssp             HHHH-HHHH
T ss_pred             hHHH-HHHH
Confidence            9999 4433

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=95.60  E-value=0.65  Score=40.64  Aligned_cols=189  Identities=12%  Similarity=0.039  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCCCC
Q 004829          477 VFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ-SMNELEQAVKLLNKALKIYGKTPGQQ  555 (728)
Q Consensus       477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~  555 (728)
                      ....+|.+....|+|++...+.++++.+.......-+.    .-...+..+|- ..|....+...+....+   ...+..
T Consensus         6 ~~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~----eERnLLsvayKn~i~~~R~s~R~i~~ie~---k~~~~~   78 (220)
T d2o8pa1           6 LQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDD----EERHLLTLCIKHKISDYRTMTSQVLQEQT---KQLNND   78 (220)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCSCH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hhccch
Confidence            34567999999999999999999999885310000011    11222333332 12444455544443221   111111


Q ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHH
Q 004829          556 STIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACV-----QRYTINEAADLFEEARTI  630 (728)
Q Consensus       556 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~  630 (728)
                       ...    .+..-|. ..=..+-...+...+.+......+.+......+-..|..|.     ..|..++|...|++|..+
T Consensus        79 -~~~----~~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~i  152 (220)
T d2o8pa1          79 -ELV----KICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTL  152 (220)
T ss_dssp             -HHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             -hHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence             101    1111111 11123344556666666666554433222222333344443     467889999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHHcC
Q 004829          631 LEKEYGPYHHDTLGVYSNLAGTYD-AMGRIDDAIEILEYVVGMREEKLG  678 (728)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~al~~~~~~~~  678 (728)
                      ....+.+.||-......+.+..|+ -+++.++|.++.+.|.+.++..+.
T Consensus       153 a~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai~  201 (220)
T d2o8pa1         153 LCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIK  201 (220)
T ss_dssp             HHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            988888889988888888877654 589999999999999766555443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.51  E-value=3.1  Score=39.08  Aligned_cols=87  Identities=14%  Similarity=0.079  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH---------HHHHHH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQM---------ALDIHR  382 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------al~~~~  382 (728)
                      ...+...|...|.+++.+.+++.++..        .+.....+..++.+|.+.+ .++-.+++..         ++..+.
T Consensus       102 l~~~v~~ye~~~~~e~Li~~Le~~~~~--------~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~  172 (336)
T d1b89a_         102 LEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAE  172 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTS--------TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHcC--------CccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHH
Confidence            455677788889999999999887654        2333345667777776543 3333333322         122222


Q ss_pred             HcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004829          383 ENTSPASIEEAADRRLMGLICDSKGDYEAALEHY  416 (728)
Q Consensus       383 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~  416 (728)
                      +.         ..|..+..+|...|+++.|+...
T Consensus       173 ~~---------~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         173 QA---------HLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             TT---------TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             Hc---------CChHHHHHHHHhcCCHHHHHHHH
Confidence            11         12445667778888888887654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.30  E-value=3.4  Score=38.84  Aligned_cols=172  Identities=15%  Similarity=0.164  Sum_probs=93.1

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCChhHHH
Q 004829          355 RYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDVAS  434 (728)
Q Consensus       355 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  434 (728)
                      -..|..+.+.|.|+.|..+|...-.                +..+..++...+++..|.+.+.++           ....
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d----------------~~rl~~~~v~l~~~~~avd~~~k~-----------~~~~   70 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN----------------FGRLASTLVHLGEYQAAVDGARKA-----------NSTR   70 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC----------------HHHHHHHHHTTTCHHHHHHHHHHH-----------TCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC----------------HHHHHHHHHhhccHHHHHHHHHHc-----------CCHH
Confidence            3456777788888888877764321                445667788899999998887654           2234


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCc
Q 004829          435 IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPS  514 (728)
Q Consensus       435 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  514 (728)
                      +|..+...+.......-|.-. ...+        ..++..   ...+...|...|.+++.+.+++.++..-.      .+
T Consensus        71 ~~k~~~~~l~~~~e~~la~i~-~~~~--------~~~~d~---l~~~v~~ye~~~~~e~Li~~Le~~~~~~~------~~  132 (336)
T d1b89a_          71 TWKEVCFACVDGKEFRLAQMC-GLHI--------VVHADE---LEELINYYQDRGYFEELITMLEAALGLER------AH  132 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHT-TTTT--------TTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTT------CC
T ss_pred             HHHHHHHHHHhCcHHHHHHHH-HHHh--------hcCHHH---HHHHHHHHHHcCChHHHHHHHHHHHcCCc------cc
Confidence            666666666666655443111 0000        113333   33466777889999999999998764411      12


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004829          515 EEIASGLIDIAAIYQSMNELEQAVKLLNK---------ALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLK  583 (728)
Q Consensus       515 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  583 (728)
                      .   ..+..++.+|.+.+ .++-.+++..         ++..+.+.        ..+..+..+|.+.|+++.|+..+-
T Consensus       133 ~---~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~--------~l~~elv~Ly~~~~~~~~A~~~~i  198 (336)
T d1b89a_         133 M---GMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQA--------HLWAELVFLYDKYEEYDNAIITMM  198 (336)
T ss_dssp             H---HHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTT--------TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             h---HHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHc--------CChHHHHHHHHhcCCHHHHHHHHH
Confidence            2   34667777776654 3444444332         22222221        113345667777888887765543

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.85  E-value=2.9  Score=36.87  Aligned_cols=185  Identities=11%  Similarity=0.099  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCCC
Q 004829          476 SVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ-SMNELEQAVKLLNKALKIYGKTPGQ  554 (728)
Q Consensus       476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~  554 (728)
                      .-+..+|.+....++|++...+.+++++......  - ..   .-...+..+|- ..|....+...+....+..... +.
T Consensus         5 e~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~--L-s~---eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~-~~   77 (236)
T d1o9da_           5 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEE--L-TV---EERNLLSVAYKNVIGARRASWRIISSIEQKEESR-GN   77 (236)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSC--C-CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC--C-CH---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcc-CC
Confidence            3467788999999999999999999987632110  0 11   11222333332 2234445555554433322221 21


Q ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--C-CCCcHHHHHHHHHHHHHHHHc-----C-----CHHHHH
Q 004829          555 QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS--G-EKKSALFGIALNQMGLACVQR-----Y-----TINEAA  621 (728)
Q Consensus       555 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~-~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~  621 (728)
                      ....     .+..-| +..=-++=..++...+.+....  . ...+......+-..|..|.-.     |     -.+.|.
T Consensus        78 ~~~~-----~~i~~y-k~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~  151 (236)
T d1o9da_          78 EEHV-----NSIREY-RSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL  151 (236)
T ss_dssp             HHHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             hHHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHH
Confidence            1100     011111 1111122334455555554332  1 111122222333334444322     2     256789


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004829          622 DLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA-MGRIDDAIEILEYVVGMR  673 (728)
Q Consensus       622 ~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~-~g~~~~A~~~~~~al~~~  673 (728)
                      ..|++|..+....+.+.||.......+.+..|+. .|+.++|..+.++++.-.
T Consensus       152 ~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         152 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999999988999999999888888877765 699999999988887644

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.53  E-value=4.1  Score=35.69  Aligned_cols=181  Identities=13%  Similarity=0.108  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 004829          478 FVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQ-SMNELEQAVKLLNKALKIYGKTPGQQS  556 (728)
Q Consensus       478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~  556 (728)
                      +..+|.+....++|++...+++++........    .    .-...+..+|- ..|....+...+....+   +..+...
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt----~----eERnLlsvayKn~i~~rR~s~R~l~~ie~---k~~~~~~   74 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQGAELS----N----EERNLLSVAYKNVVGARRSSWRVVSSIEQ---KTEGAEK   74 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCC----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C------
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCC----H----HHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHcCcch
Confidence            56789999999999999999999887743321    1    11222333332 23444455555443221   1111111


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHHHHHc-----C-----CHHHHHHH
Q 004829          557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS---GEKKSALFGIALNQMGLACVQR-----Y-----TINEAADL  623 (728)
Q Consensus       557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~  623 (728)
                      ....+     .-| +..=-.+-...+...+.+....   ...++......+-..|..|.-.     |     -.+.|...
T Consensus        75 ~~~~i-----~~y-k~kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~a  148 (230)
T d2o02a1          75 KQQMA-----REY-REKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQA  148 (230)
T ss_dssp             CHHHH-----HHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             hhHHH-----HHH-HHHHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            11111     111 1111122334455555554432   1111222222333345444422     1     24579999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHH
Q 004829          624 FEEARTILEKEYGPYHHDTLGVYSNLAGTYD-AMGRIDDAIEILEYVVGMREE  675 (728)
Q Consensus       624 ~~~al~~~~~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~al~~~~~  675 (728)
                      |++|+++....+.+.||-......+.+..|+ .+|+.++|..+.++++.-.-.
T Consensus       149 Y~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~  201 (230)
T d2o02a1         149 YQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIA  201 (230)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999998889999999888888876654 589999999999998875543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=90.72  E-value=8.3  Score=37.76  Aligned_cols=171  Identities=10%  Similarity=0.010  Sum_probs=99.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Q 004829          524 IAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIA  603 (728)
Q Consensus       524 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  603 (728)
                      .+..-....+.+.|...+.........   ...........++..+...+..+.|...+......     .. ..  ...
T Consensus       220 ~~l~rla~~d~~~a~~~l~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-----~~-~~--~~~  288 (450)
T d1qsaa1         220 VAFASVARQDAENARLMIPSLAQAQQL---NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-----SQ-ST--SLI  288 (450)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-----CC-CH--HHH
T ss_pred             HHHHHHhccChhHHHHHHHhhhhcccc---cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-----cc-ch--HHH
Confidence            343444456777888777665443221   11222333334444445566677777766655432     11 12  122


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------HHHH
Q 004829          604 LNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGM-------REEK  676 (728)
Q Consensus       604 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~~-------~~~~  676 (728)
                       ..++...+..+++..+...+...-        ..........|.+|..+...|+.++|..+|..+..-       ....
T Consensus       289 -~w~~~~al~~~~~~~~~~~~~~l~--------~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~  359 (450)
T d1qsaa1         289 -ERRVRMALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQR  359 (450)
T ss_dssp             -HHHHHHHHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred             -HHHHHHHHHcCChHHHHHHHHhcC--------cccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHH
Confidence             222333456689988887776432        223344668899999999999999999999987541       1222


Q ss_pred             cCC-------------CChHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhh
Q 004829          677 LGT-------------ANPDVEDEKRRLAELLKEAGRVRNRKSRSLVTFLDS  715 (728)
Q Consensus       677 ~~~-------------~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ll~~  715 (728)
                      +|.             ............+..+...|+...|. ..+..++..
T Consensus       360 Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~-~e~~~l~~~  410 (450)
T d1qsaa1         360 IGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTAR-SEWANLVKS  410 (450)
T ss_dssp             TTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHH-HHHHHHHTT
T ss_pred             cCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHH-HHHHHHHhC
Confidence            331             11112223445678888999999999 776666643

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=90.18  E-value=5.2  Score=34.60  Aligned_cols=184  Identities=15%  Similarity=0.090  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCCChh
Q 004829          353 TCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLICD-SKGDYEAALEHYVLASMSMAANGHELD  431 (728)
Q Consensus       353 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~  431 (728)
                      ....+|.++.+.|+|++...+.++++.+.......-....   .+.+..+|- ..|....+...+... .  ........
T Consensus         6 ~~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~eE---RnLLsvayKn~i~~~R~s~R~i~~i-e--~k~~~~~~   79 (220)
T d2o8pa1           6 LQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEE---RHLLTLCIKHKISDYRTMTSQVLQE-Q--TKQLNNDE   79 (220)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-H--HHSCSCHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCHHH---HHHHHHHHHHHHhhhHHHHHHHHHH-H--Hhhccchh
Confidence            4556889999999999999999999988653211111111   222332222 123333444333321 1  11111111


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHc
Q 004829          432 VASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYH-----KIGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       432 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~  506 (728)
                      ..    .+..-|. ..--.+-...+...+.+....+.++....+..+-..|..|.     ..|..++|...|++|..+..
T Consensus        80 ~~----~~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia~  154 (220)
T d2o8pa1          80 LV----KICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLC  154 (220)
T ss_dssp             HH----HHHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            11    1111111 11223344556666666666554322222333333455554     36788999999999999876


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004829          507 KPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI  547 (728)
Q Consensus       507 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  547 (728)
                      ...+..++-....+++.-.-.|.-+++.++|..+.+.|.+.
T Consensus       155 ~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~  195 (220)
T d2o8pa1         155 EHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI  195 (220)
T ss_dssp             HCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             hcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            54423333334444444444556689999999988887543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.40  E-value=1.2  Score=32.99  Aligned_cols=56  Identities=14%  Similarity=0.061  Sum_probs=42.8

Q ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004829          221 LGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHC  277 (728)
Q Consensus       221 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~  277 (728)
                      .+..+...|..+-..| +|++|+.+|.+|+..+.......+++.....+.....-|+
T Consensus        14 ~A~~l~~~Av~~D~~g-~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl   69 (93)
T d1wfda_          14 AAVAVLKRAVELDAES-RYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYM   69 (93)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            4567888999999997 9999999999999998887666666665555554444443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.89  E-value=1.8  Score=30.39  Aligned_cols=47  Identities=11%  Similarity=0.159  Sum_probs=37.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 004829          220 ALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVM  267 (728)
Q Consensus       220 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~  267 (728)
                      +.+..+-..|..+...| .|++||+++++|...+.....-.+++....
T Consensus         6 N~AH~~~RrAer~l~~~-rydeAIech~kA~~yl~eA~klt~s~~~l~   52 (83)
T d2crba1           6 NLAHQQSRRADRLLAAG-KYEEAISCHRKATTYLSEAMKLTESEQAHL   52 (83)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence            45667888999999997 999999999999998887766555444433

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.21  E-value=8.8  Score=33.45  Aligned_cols=178  Identities=12%  Similarity=0.027  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCCCCcH
Q 004829          312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQ-SLQFDEAEKICQMALDIHRENTSPASI  390 (728)
Q Consensus       312 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  390 (728)
                      +..+|.+..+.++|++.+.+..+++.....       ....-...+..+|-. .|....+...+.......  .......
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~e-------Lt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~--~~~~~~~   76 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQGAE-------LSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKT--EGAEKKQ   76 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--cCcchhh
Confidence            677899999999999999999998766211       111112222222221 223333333333221110  0011111


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HhcCCChhHHHHHHHHHHHHHHhC----------CHHHHHHH
Q 004829          391 EEAADRRLMGLICDSKGDYEAALEHYVLASMSM-----AANGHELDVASIDCSIGDAYLSLA----------RFDEAIFS  455 (728)
Q Consensus       391 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~  455 (728)
                      ....-+..        .=-.+-...+...+.+.     ....+....+..+...|..|...-          -.+.|...
T Consensus        77 ~~i~~yk~--------kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~a  148 (230)
T d2o02a1          77 QMAREYRE--------KIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQA  148 (230)
T ss_dssp             HHHHHHHH--------HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--------HHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            11100000        00011122233333322     122233333444445566554432          23579999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHc
Q 004829          456 YHKALTAFKSAKGENHPAVASVFVRLADLYHK-IGKLRDSKSYCENALKIYG  506 (728)
Q Consensus       456 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~  506 (728)
                      |++|+++....+.+.+|.......+.+..|+. +|+.++|....+++++..-
T Consensus       149 Y~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai  200 (230)
T d2o02a1         149 YQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAI  200 (230)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            99999999888888888888777777777665 7999999999999887653