Citrus Sinensis ID: 004841

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------73
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
ccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEccccccEEEEcEEcccEEEEEEcHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccEEEEccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccEEcc
ccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHEccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEcccccEEEEEEHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccEEEcc
mtmnerktIDLEQGWEFMQKGITKLKNIleglpepqfssedYMMLYTYLFQPHLVSAFVNILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIarrslpplnevgltCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIgmgqmdyyENDFETAMLKDTAAYYsrkasnwiledscpdyMLKAEECLKREKDRVshylhsssepklLEKVQHELLSVYANQLLEkehsgchallrddkvEDLSRMFRLFskiprgldpvsnIFKQHVTAEGTALVKLAEDAAsnkkaekrdvvGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCnkgvagssSAELLATFCDNILkkggseklsDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLlfdksanddhERSILTKLKqqcggqftskmegMVTDLTLARENQTSFEEYLsnnpnanpgidLTVTVLTtgfwpsyksfdlnlpaEMVKCVEVFREFYQTktkhrkltwIYSLGTcnllgkfesrtTELIVTTYQASALLLFnssdrlsysEIMTQLNLSDDDVVRLLHSLSCAKYkilnkepntktisptdhfefnskftdkmrrikiplppvdekkkvIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRdylerdksnpnmfryla
mtmnerktidleqgWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLidqeregeqidRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFskiprgldpvSNIFKQHVTAEGTALVKLAEDAasnkkaekrdvvglqeqVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLfdksanddhersiltklkqqcggqftskMEGMVTDLTLARENQTSFEEYLsnnpnanpGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQtktkhrkltwiySLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAkykilnkepntktisptdhfefnskftdkmrrikiplppvdekkkviedvdkdrryAIDASIVRIMKSRKVLGHQQLVLECVEQlgrmfkpdfkaIKKRIEDlitrdylerdksnpnmfryla
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPvdekkkviedvdkdRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
**********LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKR*******Y********LLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA************DVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGG***L*DEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDK*********ILTKLKQQCGGQF******MVTDLTL*****************ANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE**********HFEFNSKFTDKMRRIKIPL*******KVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYL**************
******K****EQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA***************GLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKG*******EAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEE*L*******PGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN*******ISPTDHFEFNSKFTDKMRRIK******************DRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
******KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAAS**********GLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLxxxxxxxxxxxxxxxxxxxxxVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query728 2.2.26 [Sep-21-2011]
Q94AH6738 Cullin-1 OS=Arabidopsis t yes no 0.990 0.976 0.801 0.0
Q9SRZ0742 Cullin-2 OS=Arabidopsis t no no 0.984 0.966 0.637 0.0
P0CH31721 Putative cullin-like prot no no 0.951 0.961 0.639 0.0
Q54NZ5769 Cullin-3 OS=Dictyostelium yes no 0.885 0.838 0.363 1e-125
Q9ZVH4732 Cullin-3A OS=Arabidopsis no no 0.951 0.946 0.346 1e-115
Q9C9L0732 Cullin-3B OS=Arabidopsis no no 0.953 0.948 0.341 1e-113
Q13619759 Cullin-4A OS=Homo sapiens no no 0.870 0.835 0.358 1e-111
Q9XIE9374 Putative cullin-like prot no no 0.461 0.898 0.539 1e-109
A2A432970 Cullin-4B OS=Mus musculus yes no 0.855 0.642 0.359 1e-108
Q13620913 Cullin-4B OS=Homo sapiens no no 0.855 0.682 0.359 1e-107
>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1238 bits (3202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/740 (80%), Positives = 662/740 (89%), Gaps = 19/740 (2%)

Query: 5   ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQ------PHLVS-- 56
           ERKTIDLEQGW++MQ GITKLK ILEGL EP F SE YMMLYT ++       PH  S  
Sbjct: 2   ERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQQ 61

Query: 57  -------AFVN-ILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIA 108
                  AF   I   VLP++REKHDEFMLREL KRWSNHKVMVRWLSRFF+YLDRYFIA
Sbjct: 62  LYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIA 121

Query: 109 RRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIG 168
           RRSLPPLNEVGLTCFRDLVY EL+ KV+ AVI L+D+EREGEQIDRALLKNVLDI+VEIG
Sbjct: 122 RRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIG 181

Query: 169 MGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHS 228
           MGQM+ YE DFE+ ML+DT++YYSRKAS+WI EDSCPDYMLK+EECLK+E++RV+HYLHS
Sbjct: 182 MGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHS 241

Query: 229 SSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVS 288
           SSEPKL+EKVQHELL V+A+QLLEKEHSGC ALLRDDKV+DLSRM+RL+ KI RGL+PV+
Sbjct: 242 SSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVA 301

Query: 289 NIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQ 348
           NIFKQHVTAEG ALV+ AED A+N+ A   +   +QEQV +RKVIELHDKY+ YV +CFQ
Sbjct: 302 NIFKQHVTAEGNALVQQAEDTATNQVA---NTASVQEQVLIRKVIELHDKYMVYVTECFQ 358

Query: 349 NHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVK 408
           NHTLFHK+LKEAFE+FCNK VAGSSSAELLATFCDNILKKGGSEKLSDEAIE+ LEKVVK
Sbjct: 359 NHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVK 418

Query: 409 LLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 468
           LLAYISDKDLFAEFYRKKLARRLLFD+SANDDHERSILTKLKQQCGGQFTSKMEGMVTDL
Sbjct: 419 LLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 478

Query: 469 TLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREF 528
           TLARENQ SFE+YL +NP ANPGIDLTVTVLTTGFWPSYKSFD+NLP+EM+KCVEVF+ F
Sbjct: 479 TLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGF 538

Query: 529 YQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQL 588
           Y+TKTKHRKLTWIYSLGTC++ GKF+ +  ELIV+TYQA+ LLLFN++D+LSY+EI+ QL
Sbjct: 539 YETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQL 598

Query: 589 NLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEK 648
           NLS +D+VRLLHSLSCAKYKIL KEPNTKT+S  D FEFNSKFTD+MRRIKIPLPPVDE+
Sbjct: 599 NLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDER 658

Query: 649 KKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDL 708
           KKV+EDVDKDRRYAIDA+IVRIMKSRKVLGHQQLV ECVEQL RMFKPD KAIKKR+EDL
Sbjct: 659 KKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDL 718

Query: 709 ITRDYLERDKSNPNMFRYLA 728
           ITRDYLERDK NPNMFRYLA
Sbjct: 719 ITRDYLERDKENPNMFRYLA 738
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Regulator of mitotic processes which plays a role during gametogenesis and embryogenesis. Together with SKP1, RBX1 and a F-box protein, it forms a SCF complex. The functional specificity of this complex depends of the type of F-box protein. SCF(UFO) is implicated in floral organ development. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1/ZTL), SCF(ADO2/LKP2), SCF(ADO3/FKF1) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1 Back     alignment and function description
>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140 PE=3 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1 Back     alignment and function description
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3 Back     alignment and function description
>sp|Q9XIE9|CLL2_ARATH Putative cullin-like protein 2 OS=Arabidopsis thaliana GN=At1g59790 PE=3 SV=2 Back     alignment and function description
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1 Back     alignment and function description
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query728
255551707744 Cullin-1, putative [Ricinus communis] gi 1.0 0.978 0.931 0.0
224123204744 predicted protein [Populus trichocarpa] 1.0 0.978 0.926 0.0
449450670744 PREDICTED: cullin-1-like [Cucumis sativu 1.0 0.978 0.920 0.0
224107343742 predicted protein [Populus trichocarpa] 0.997 0.978 0.920 0.0
225432272744 PREDICTED: cullin-1 isoform 1 [Vitis vin 1.0 0.978 0.919 0.0
386688470744 cullin 1-like protein B [Prunus avium] 1.0 0.978 0.907 0.0
356563944744 PREDICTED: cullin-1-like isoform 1 [Glyc 1.0 0.978 0.903 0.0
356556122744 PREDICTED: cullin-1-like [Glycine max] 1.0 0.978 0.900 0.0
356521879744 PREDICTED: cullin-1-like isoform 1 [Glyc 1.0 0.978 0.899 0.0
356529771744 PREDICTED: cullin-1-like [Glycine max] 1.0 0.978 0.899 0.0
>gi|255551707|ref|XP_002516899.1| Cullin-1, putative [Ricinus communis] gi|223543987|gb|EEF45513.1| Cullin-1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1424 bits (3687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 693/744 (93%), Positives = 710/744 (95%), Gaps = 16/744 (2%)

Query: 1   MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQ------PHL 54
           MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYT ++       PH 
Sbjct: 1   MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHD 60

Query: 55  VSAFVN----------ILLLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDR 104
            S  +           I   VLPS+REKHDEFMLRELVKRW+NHKVMVRWLSRFFHYLDR
Sbjct: 61  YSQQLYDKYRESFEEYITSTVLPSLREKHDEFMLRELVKRWANHKVMVRWLSRFFHYLDR 120

Query: 105 YFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIF 164
           YFIARRSLPPLNEVGLTCFRDLVY ELN KVRDAVI+LIDQEREGEQIDRALLKNVLDIF
Sbjct: 121 YFIARRSLPPLNEVGLTCFRDLVYQELNAKVRDAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 165 VEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH 224
           VEIGMGQMDYYENDFE AMLKDT +YYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH
Sbjct: 181 VEIGMGQMDYYENDFEVAMLKDTGSYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH 240

Query: 225 YLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGL 284
           YLHSSSEPKLLEKVQ+ELLSV+ANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGL
Sbjct: 241 YLHSSSEPKLLEKVQYELLSVFANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGL 300

Query: 285 DPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVN 344
           DPVS+IFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVN
Sbjct: 301 DPVSSIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVN 360

Query: 345 DCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLE 404
           DCFQNHTLFHK+LKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEE LE
Sbjct: 361 DCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLE 420

Query: 405 KVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGM 464
           KVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGM
Sbjct: 421 KVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGM 480

Query: 465 VTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEV 524
           VTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEV
Sbjct: 481 VTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEV 540

Query: 525 FREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEI 584
           FREFYQTKTKHRKLTWIYSLGTCNL+GKFE +T ELIVTTYQASALLLFNSSDRLSYSEI
Sbjct: 541 FREFYQTKTKHRKLTWIYSLGTCNLIGKFEPKTMELIVTTYQASALLLFNSSDRLSYSEI 600

Query: 585 MTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPP 644
           MTQLNL+DDDVVRLLHSLSCAKYKILNKEPNTK+ISPTD+FEFNSKFTDKMRRIKIPLPP
Sbjct: 601 MTQLNLTDDDVVRLLHSLSCAKYKILNKEPNTKSISPTDYFEFNSKFTDKMRRIKIPLPP 660

Query: 645 VDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKR 704
           VDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKR
Sbjct: 661 VDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKR 720

Query: 705 IEDLITRDYLERDKSNPNMFRYLA 728
           IEDLITRDYLERDK NPN+FRYLA
Sbjct: 721 IEDLITRDYLERDKDNPNLFRYLA 744

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123204|ref|XP_002330364.1| predicted protein [Populus trichocarpa] gi|222871568|gb|EEF08699.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450670|ref|XP_004143085.1| PREDICTED: cullin-1-like [Cucumis sativus] gi|449517495|ref|XP_004165781.1| PREDICTED: cullin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224107343|ref|XP_002314453.1| predicted protein [Populus trichocarpa] gi|222863493|gb|EEF00624.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432272|ref|XP_002272195.1| PREDICTED: cullin-1 isoform 1 [Vitis vinifera] gi|297736859|emb|CBI26060.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|386688470|gb|AFJ21665.1| cullin 1-like protein B [Prunus avium] Back     alignment and taxonomy information
>gi|356563944|ref|XP_003550217.1| PREDICTED: cullin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356556122|ref|XP_003546376.1| PREDICTED: cullin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356521879|ref|XP_003529578.1| PREDICTED: cullin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356529771|ref|XP_003533461.1| PREDICTED: cullin-1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query728
TAIR|locus:2132377738 CUL1 "cullin 1" [Arabidopsis t 0.990 0.976 0.785 5.69999999999e-313
TAIR|locus:2024755742 CUL2 "cullin 2" [Arabidopsis t 0.910 0.893 0.661 3e-249
TAIR|locus:2018645721 AT1G43140 [Arabidopsis thalian 0.582 0.588 0.625 8.4e-243
TAIR|locus:2205020732 CUL3B "AT1G69670" [Arabidopsis 0.541 0.538 0.384 2.1e-113
UNIPROTKB|F1RN43761 CUL4A "Uncharacterized protein 0.546 0.522 0.409 2.2e-103
FB|FBgn0261268934 Cul-3 "Cullin-3" [Drosophila m 0.641 0.5 0.311 9.7e-99
TAIR|locus:2025881374 AT1G59790 [Arabidopsis thalian 0.427 0.831 0.559 2.7e-93
TAIR|locus:2162060792 CUL4 "cullin4" [Arabidopsis th 0.520 0.478 0.407 1.6e-92
UNIPROTKB|F1MYD0776 CUL1 "Uncharacterized protein" 0.891 0.836 0.320 3.8e-91
UNIPROTKB|E2R1V2776 CUL1 "Uncharacterized protein" 0.891 0.836 0.320 3.8e-91
TAIR|locus:2132377 CUL1 "cullin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3002 (1061.8 bits), Expect = 5.7e-313, P = 5.7e-313
 Identities = 581/740 (78%), Positives = 647/740 (87%)

Query:     5 ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQ------PHLVS-- 56
             ERKTIDLEQGW++MQ GITKLK ILEGL EP F SE YMMLYT ++       PH  S  
Sbjct:     2 ERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQQ 61

Query:    57 -------AFVNIL-LLVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIA 108
                    AF   +   VLP++REKHDEFMLREL KRWSNHKVMVRWLSRFF+YLDRYFIA
Sbjct:    62 LYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIA 121

Query:   109 RRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIG 168
             RRSLPPLNEVGLTCFRDLVY EL+ KV+ AVI L+D+EREGEQIDRALLKNVLDI+VEIG
Sbjct:   122 RRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIG 181

Query:   169 MGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHS 228
             MGQM+ YE DFE+ ML+DT++YYSRKAS+WI EDSCPDYMLK+EECLK+E++RV+HYLHS
Sbjct:   182 MGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHS 241

Query:   229 SSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVS 288
             SSEPKL+EKVQHELL V+A+QLLEKEHSGC ALLRDDKV+DLSRM+RL+ KI RGL+PV+
Sbjct:   242 SSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVA 301

Query:   289 NIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQ 348
             NIFKQHVTAEG ALV+ AED A+N+ A    V   QEQV +RKVIELHDKY+ YV +CFQ
Sbjct:   302 NIFKQHVTAEGNALVQQAEDTATNQVANTASV---QEQVLIRKVIELHDKYMVYVTECFQ 358

Query:   349 NHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVK 408
             NHTLFHK+LKEAFE+FCNK VAGSSSAELLATFCDNILKKGGSEKLSDEAIE+ LEKVVK
Sbjct:   359 NHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVK 418

Query:   409 LLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 468
             LLAYISDKDLFAEFYRKKLARRLLFD+SANDDHERSILTKLKQQCGGQFTSKMEGMVTDL
Sbjct:   419 LLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 478

Query:   469 TLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREF 528
             TLARENQ SFE+YL +NP ANPGIDLTVTVLTTGFWPSYKSFD+NLP+EM+KCVEVF+ F
Sbjct:   479 TLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGF 538

Query:   529 YQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQL 588
             Y+TKTKHRKLTWIYSLGTC++ GKF+ +  ELIV+TYQA+ LLLFN++D+LSY+EI+ QL
Sbjct:   539 YETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQL 598

Query:   589 NLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXX 648
             NLS +D+VRLLHSLSCAKYKIL KEPNTKT+S  D FEFNSKFTD+MRRIKIPLPP    
Sbjct:   599 NLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDER 658

Query:   649 XXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDL 708
                       RRYAIDA+IVRIMKSRKVLGHQQLV ECVEQL RMFKPD KAIKKR+EDL
Sbjct:   659 KKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDL 718

Query:   709 ITRDYLERDKSNPNMFRYLA 728
             ITRDYLERDK NPNMFRYLA
Sbjct:   719 ITRDYLERDKENPNMFRYLA 738
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=IPI
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0005819 "spindle" evidence=IDA
GO:0009524 "phragmoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0000794 "condensed nuclear chromosome" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009753 "response to jasmonic acid stimulus" evidence=IMP
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS
GO:0010265 "SCF complex assembly" evidence=IPI
GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009790 "embryo development" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048316 "seed development" evidence=RCA
GO:0048366 "leaf development" evidence=IMP;RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0010087 "phloem or xylem histogenesis" evidence=IMP
TAIR|locus:2024755 CUL2 "cullin 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018645 AT1G43140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205020 CUL3B "AT1G69670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1RN43 CUL4A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0261268 Cul-3 "Cullin-3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2025881 AT1G59790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162060 CUL4 "cullin4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MYD0 CUL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1V2 CUL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q09760CUL3_SCHPONo assigned EC number0.31890.88460.8203yesno
Q94AH6CUL1_ARATHNo assigned EC number0.80130.99030.9769yesno
Q17389CUL1_CAEELNo assigned EC number0.30900.89010.8307yesno
Q54NZ5CUL3_DICDINo assigned EC number0.36310.88590.8387yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query728
pfam00888603 pfam00888, Cullin, Cullin family 0.0
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 1e-115
smart00182143 smart00182, CULLIN, Cullin 1e-57
pfam1055768 pfam10557, Cullin_Nedd8, Cullin protein neddylatio 6e-28
smart0088468 smart00884, Cullin_Nedd8, Cullin protein neddylati 4e-25
pfam03450103 pfam03450, CO_deh_flav_C, CO dehydrogenase flavopr 0.004
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  578 bits (1492), Expect = 0.0
 Identities = 257/630 (40%), Positives = 379/630 (60%), Gaps = 39/630 (6%)

Query: 15  WEFMQKGITKLKNILEGLPEPQFSSEDYMMLYT--YLFQPHLVSA---------FVNILL 63
           WE +   I ++           FSS DYM LYT  Y + PH +               + 
Sbjct: 1   WEKLLDAIDQILL-------KSFSSLDYMELYTAVYNYVPHKLGEKLYNRLKEYLEEYVA 53

Query: 64  LVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCF 123
            +L SI E  DE +L+   K W+     ++ L+  F YL+RY++ R++L  + E+GL  +
Sbjct: 54  ALLKSILENDDEVLLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLDGVYELGLDIW 113

Query: 124 RDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAM 183
           R+ ++  +  K+ DA++ LI++ER GE IDR+L+KNVLD+FVE+G+ +++ Y+ DFE   
Sbjct: 114 RESLFDPIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVELGLDKLEVYKEDFEKPF 173

Query: 184 LKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELL 243
           L+ T+ +Y +++S ++ E+S  +YM K EE L+ E++RV  YLHSS+E KL+E  +  L+
Sbjct: 174 LEATSEFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLHSSTEKKLIEVCEKVLI 233

Query: 244 SVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALV 303
             +   L    HS    LL ++K+EDL RM+RL S++P GL+P+   F++H+  EG A V
Sbjct: 234 EKHLEFL----HSEFQRLLDNEKIEDLRRMYRLLSRVPNGLEPLRKYFEKHIKKEGLAAV 289

Query: 304 KLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEV 363
                            V    + +V+ ++ELHDKY + VN+ F N  LF  +L +AFE 
Sbjct: 290 SDLA-------------VETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALDKAFEE 336

Query: 364 FCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFY 423
           F N     S SAELLA +CD++LKK   + L++E +EE L+K++ L  YI DKD+F +FY
Sbjct: 337 FINSNS--SKSAELLAKYCDSLLKK-SLKGLNEEELEEKLDKIIVLFKYIEDKDVFEKFY 393

Query: 424 RKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLS 483
           RK LA+RLL   SA+DD E+ ++ KLKQ+CG QFTSK+E M  D++L++E   SF+ +L 
Sbjct: 394 RKMLAKRLLNGTSASDDAEKKMIEKLKQECGYQFTSKLERMFKDISLSKELNNSFKNHLE 453

Query: 484 NNPNANP-GIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIY 542
           NN +    GIDL+V VL+TGFWP+  +   +LP E+ K +E F EFY  K   RKLTW++
Sbjct: 454 NNLDLLSEGIDLSVLVLSTGFWPTLPTEPFSLPEELEKALEKFEEFYSKKHSGRKLTWLH 513

Query: 543 SLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSL 602
           SLG   L  +F  +T EL V+TYQ + LLLFN  + L+  E+     LSDD + R L SL
Sbjct: 514 SLGRGELKAEFNDKTYELTVSTYQMAVLLLFNDQEELTVEELSEATGLSDDLLRRTLQSL 573

Query: 603 SCAKYKILNKEPNTKTISPTDHFEFNSKFT 632
             AK  +L K P  +  SP   F  NS FT
Sbjct: 574 LKAKVLLLTKIPKGEEFSPNTVFSLNSDFT 603

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|217566 pfam03450, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 728
KOG2166725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 100.0
KOG2284728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
KOG2285777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165765 consensus Anaphase-promoting complex (APC), subuni 99.96
PF1055768 Cullin_Nedd8: Cullin protein neddylation domain; I 99.79
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 95.51
TIGR0161095 phage_O_Nterm phage replication protein O, N-termi 92.82
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 92.15
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 90.59
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 90.39
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 90.03
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 87.97
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 86.8
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 86.72
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 86.58
TIGR02337118 HpaR homoprotocatechuate degradation operon regula 85.17
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 84.59
PF1284061 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ 84.33
PRK11512144 DNA-binding transcriptional repressor MarR; Provis 83.05
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 82.68
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 82.15
TIGR02698130 CopY_TcrY copper transport repressor, CopY/TcrY fa 81.6
COG3682123 Predicted transcriptional regulator [Transcription 80.76
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-121  Score=1031.93  Aligned_cols=703  Identities=63%  Similarity=1.052  Sum_probs=651.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC-----------CchhhHHH-HHHHHHH----H
Q 004841            5 ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQP-----------HLVSAFVN-ILLLVLP----S   68 (728)
Q Consensus         5 ~~~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~~-----------~~y~~l~~-l~~~v~~----~   68 (728)
                      .+.+.+|+.+|..++++++++.+..++-+...++.-+|+.+|+++|+.           .+|.++++ +.+++..    .
T Consensus         4 ~~~~~~~~~~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~k~~~~~~~~lY~~l~~~~~~yl~~~~~~~   83 (725)
T KOG2166|consen    4 APKEIDLEVGWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQKPPHDYSQQLYDKYREVIEEYLIQTVLPA   83 (725)
T ss_pred             cccccchhccHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999988763333346677899999999991           25677887 7777643    3


Q ss_pred             HhhhchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcC-CCCcHHHHH-HHHHHHHHhh-hhhHHHHHHHHHHHHH
Q 004841           69 IREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARR-SLPPLNEVG-LTCFRDLVYT-ELNGKVRDAVITLIDQ  145 (728)
Q Consensus        69 l~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdr~yv~~~-~~~~i~~l~-l~~f~~~v~~-~~~~~l~~~ll~~I~~  145 (728)
                      .....++.+|+.+.+.|.+|+.++.+++++|+||||+||+++ +..++++++ +.+|+..++. ++++.++++++.+|..
T Consensus        84 ~~~~~~~~~l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~~~~~~v~~~~~l~l~r~~v~~~~~~~~~~~all~lI~~  163 (725)
T KOG2166|consen   84 LREKHDEYMLRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQSRRKLPTLNEVGLTCFRDLVYKFEMQSEAIDALLALIHK  163 (725)
T ss_pred             HHhcCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccceeeEEeehHHHHHHHHHHHHHHHHHHHHh
Confidence            344567889999999999999999999999999999999976 666777666 8899888877 5999999999999999


Q ss_pred             HhcCCcCCHHHHHHHHHHHHHhccCchhchHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHchh
Q 004841          146 EREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHY  225 (728)
Q Consensus       146 ~R~g~~id~~~l~~~i~ml~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~~Yl~~v~~~l~eE~~r~~~y  225 (728)
                      +|.|+.||+..|+++++|+..+|.+..++|...||++|++.|+.||..++++|+...++.+|+.+|+.++.+|..|+..|
T Consensus       164 eR~ge~in~~~i~~~~~~~~~lg~~~~s~Y~~~Fe~~fl~~t~~~y~~~~~~~l~~~~~~~yl~k~e~~l~~e~~r~~~y  243 (725)
T KOG2166|consen  164 EREGEQIDRELIRNVIDVYVELGMGELSFYEEDFERKFLQDTASYYSEEASEWLEENSCLDYLKKIEECLKEERERVTHY  243 (725)
T ss_pred             hcccccccHHHHhhHHHHHHhccccchhHHHHHhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhcCcHHHHHHHHHhhccCCCChHhHHHHHHHHHHHHHHHHHHH
Q 004841          226 LHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKL  305 (728)
Q Consensus       226 L~~~t~~kl~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~  305 (728)
                      ++..+.+++.+.++..++..+++.+++..++|+..|+.+++.++|.+||+|++++++|++++++.++.|++.+|..++.+
T Consensus       244 l~~~~e~~~~~~le~~~~~~~~~~~~e~~~sgf~~~l~~~~~edl~~my~l~~r~~~gl~~l~~~~~~~~~~eg~~l~~r  323 (725)
T KOG2166|consen  244 LHSSTEPKLVEVVEDELIVVFADDLEEMEHSGFRALLNDDKLEDLSRMYRLFRRILPGLEPLASVFKQHVREEGNALVAR  323 (725)
T ss_pred             hhhcccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHhccchhHHHHHHHHhhcccccchhHHHHHHHHHHhhHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888876


Q ss_pred             HHHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 004841          306 AEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNI  385 (728)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~i~~ll~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~N~~~~~~~~~e~La~y~d~~  385 (728)
                      .....           ..+|..+|..+++++++|..++..||++|..|..+++.||..|+|.+..  ..+|+||+|||.+
T Consensus       324 ~~~~~-----------~~~~~~~v~~~l~~~~~~~~~~~~~f~~d~~f~~~ld~a~~~fin~n~~--~~~E~la~y~D~~  390 (725)
T KOG2166|consen  324 PAETA-----------ATNPVEYVQGLLELHDKYKVLVKECFANDTLFKKALDAAFEEFINKNVA--TSAELLATYCDDI  390 (725)
T ss_pred             hhhhc-----------ccchHHHHhccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHcccCC--CcHHHHHHHhHHH
Confidence            55331           1578999999999999999999999999999999999999999999862  2369999999999


Q ss_pred             hccCCCCCCChHHHHHHHHHHhhhhccccChHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhCChhhHhHHHHH
Q 004841          386 LKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMV  465 (728)
Q Consensus       386 lk~~~~~~~~~~~~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk~~~G~~~t~kl~~Ml  465 (728)
                      ||++ ..+.++++++..+++++.+|+|+.+||+|+++|+++||||||+++|.|+++|++||++|+++||.+||++|++|+
T Consensus       391 lkk~-~k~~~e~~ie~~l~~v~~l~~yisdKdvF~~~Ykk~lakRLl~~~S~sdd~E~~mIsklk~~~g~~~T~kL~~Mf  469 (725)
T KOG2166|consen  391 LKKG-SKKLSDEAIEDTLEKVVKLLKYISDKDVFAEFYKKVLARRLLFDRSASDDHEKSLITKLKNLCGEQFTSKLEGMF  469 (725)
T ss_pred             hccc-ccCCchhHHHhHhhcceeeeeeccHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhHHHHHHHhhc
Confidence            9995 467889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCcHhHHHHHHHHHHHHHhcCCCceEEeccCCc
Q 004841          466 TDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLG  545 (728)
Q Consensus       466 ~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~lg  545 (728)
                      +|+..|++++..|+++ . +.....+++|.|.|||+|+||.+++.++.||++|..+++.|.+||..+|+||+|.|+|++|
T Consensus       470 ~D~~~s~~l~~~F~~~-~-~~~~~~~~df~v~VLt~g~WP~~~~~~~~LP~el~~~~e~F~~~Y~~kh~gR~L~w~~~l~  547 (725)
T KOG2166|consen  470 TDLTLSRELQTAFADY-A-NYSANLGIDFTVTVLTTGFWPSYKSTDINLPSEMSDCVEMFKGFYATKHNGRRLTWIYSLG  547 (725)
T ss_pred             ccHHHHHHHHHHHHhh-h-chhccCCCceeEEEeecCCcCCccCCCCCCChhHHHHHHHHHHHHhhccCCCeeeeeeccC
Confidence            9999999999999987 2 2222357999999999999999888889999999999999999999999999999999999


Q ss_pred             eEEEEeEEcCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCeE
Q 004841          546 TCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHF  625 (728)
Q Consensus       546 ~~~i~~~~~~~~~~l~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~~  625 (728)
                      +|+|.++|.+++++++||++||+||++||+.+.+|+++|.+.|+++.+++.++|+||++.|.+++.+ |.++. ++++.|
T Consensus       548 ~~ei~~~~~~~~~~l~vst~Qm~VLlLFN~~d~lt~~eI~~~t~i~~~~l~~~L~Sl~~~K~~v~~~-~~s~~-~~~~~~  625 (725)
T KOG2166|consen  548 TGEINGKFDKKTVELQVSTYQMAVLLLFNNTEKLTYEEILEQTNLGHEDLARLLQSLSCLKYKILLK-PMSRT-SPNDEF  625 (725)
T ss_pred             ceEEEEEecCceEEEEEEhHHHHHHHHccchhhccHHHHHHHhCCCHHHHHHHHHHHHHHhHhhccC-ccccC-CCCcEE
Confidence            9999999999999999999999999999999999999999999999999999999999888777766 77766 899999


Q ss_pred             EEecCCCCCCcceeccCCChhhhhHHHHhHHHhhhhhhhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 004841          626 EFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRI  705 (728)
Q Consensus       626 ~~N~~F~~~~~~i~i~~~~~~e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~I  705 (728)
                      .+|.+|+++.+|+++|.++..|.+++.+.+++||+..|+||||||||+||.+.|++|+.||++|+++||.|++.+||+||
T Consensus       626 ~~N~~f~sk~~Rv~i~~~~~~e~~~~~~~ve~dRk~~i~AaIVRIMK~rK~l~h~~Lv~Ev~~ql~~RF~p~v~~IKk~I  705 (725)
T KOG2166|consen  626 AFNSKFTSKMRRVKIPLPPMDERKKVVEDVDKDRKYAIDAAIVRIMKSRKVLGHQQLVSEVVEQLSERFKPDIKMIKKRI  705 (725)
T ss_pred             EeeccccCcceeeccCCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            99999999999999998888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhcccCCCCCCceee
Q 004841          706 EDLITRDYLERDKSNPNMFRY  726 (728)
Q Consensus       706 e~LIereyi~R~~~d~~~y~Y  726 (728)
                      |.|||||||+|| +|+++|+|
T Consensus       706 e~LIEkeYleR~-~~~~~Y~Y  725 (725)
T KOG2166|consen  706 EDLIEREYLERD-ENPNIYRY  725 (725)
T ss_pred             HHHHHHHHHhcc-CCCCcccC
Confidence            999999999999 89999998

>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B Back     alignment and domain information
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family Back     alignment and domain information
>COG3682 Predicted transcriptional regulator [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query728
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 1e-109
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 1e-109
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1e-105
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 1e-105
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 4e-93
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 4e-93
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 3e-53
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 4e-51
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 4e-35
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 4e-34
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 9e-33
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 1e-32
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 2e-32
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 1e-29
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 6e-29
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 7e-22
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 7e-16
2do7_A101 Solution Structure Of The Winged Helix-Turn-Helix M 1e-14
3tdu_C77 N-Terminal Acetylation Acts As An Avidity Enhancer 6e-11
1iuy_A92 Solution Structure Of The Cullin-3 Homologue Length 2e-10
3o6b_B76 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 8e-06
3o2p_E88 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 1e-05
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure 
Iteration: 1

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/672 (35%), Positives = 372/672 (55%), Gaps = 38/672 (5%)
Query: 65  VLPSIREKHDEFM-LRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTC 122
           +LP   +  D  + L+++   W +H   +  +   F +LDR ++ + S LP + ++GL  
Sbjct: 118 ILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLEL 177
Query: 123 FRDLVYTE--LNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFE 180
           FR  + ++  +  K  D ++ LI++ER GE +DR+LL+++L +     +  +  Y++ FE
Sbjct: 178 FRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGM-----LSDLQVYKDSFE 232
Query: 181 TAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQH 240
              L++T   Y+ +    + E   P+Y+    + L+ E DRV  YL  S++  L+  V+ 
Sbjct: 233 LKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEK 292
Query: 241 ELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGT 300
           +LL  +   +L+K   G   LL +++V DL++M++LFS++  G   +   + +++   GT
Sbjct: 293 QLLGEHLTAILQK---GLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGT 349
Query: 301 ALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEA 360
           A+V   E                +++  V+ +++  DK    +  CFQ +  F   +KE+
Sbjct: 350 AIVINPE----------------KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKES 393
Query: 361 FEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFA 420
           FE F NK    +  AEL+A   D+ L+ G  E  +DE +E  L+K++ L  +I  KD+F 
Sbjct: 394 FETFINK--RPNKPAELIAKHVDSKLRAGNKEA-TDEELERTLDKIMILFRFIHGKDVFE 450
Query: 421 EFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEE 480
            FY+K LA+RLL  KSA+ D E+S+L+KLK +CG  FTSK+EGM  D+ L+++    F++
Sbjct: 451 AFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQ 510
Query: 481 YLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTW 540
           ++ N  ++ P IDLTV +LT G+WP+Y   +++L  EM+K  EVF+ FY  K   RKL W
Sbjct: 511 HMQNQSDSGP-IDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQW 569
Query: 541 IYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLH 600
             +LG   L  +F+    E  V+ +Q   LL+FN  D  S+ EI     + D ++ R L 
Sbjct: 570 QTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQ 629
Query: 601 SLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXX 656
           SL+C K ++L K P  K +   D F FN +F  K+ RIKI                    
Sbjct: 630 SLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVF 689
Query: 657 XXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLER 716
             R+Y IDA+IVRIMK RK LGH  LV E   QL    KP    +KKRIE LI RDY+ER
Sbjct: 690 QDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMER 747
Query: 717 DKSNPNMFRYLA 728
           DK NPN + Y+A
Sbjct: 748 DKDNPNQYHYVA 759
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of Human Cul-4b Length = 101 Back     alignment and structure
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 77 Back     alignment and structure
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue Length = 92 Back     alignment and structure
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Low Resolution Length = 76 Back     alignment and structure
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query728
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 0.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 0.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 1e-112
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 1e-86
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 2e-84
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 3e-82
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 4e-71
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 4e-30
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 2e-29
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 2e-28
3o2p_E88 Cell division control protein 53; ligase, cell cyc 3e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-14
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
 Score =  624 bits (1609), Expect = 0.0
 Identities = 229/784 (29%), Positives = 395/784 (50%), Gaps = 90/784 (11%)

Query: 11  LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLF-------------------- 50
           L+Q W+ ++ GI ++            +   YM LYT+++                    
Sbjct: 1   LDQIWDDLRAGIQQVYT------RQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPS 54

Query: 51  ------------------QPHLVSAFVNILLLVLPSIREKHDEFMLRELVKRWSNHKVMV 92
                                L     N L  +L    +  DE +L+   ++W +++   
Sbjct: 55  KSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSS 114

Query: 93  RWLSRFFHYLDRYFIAR------RSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQE 146
           + L+    YL+R+++ R      + +  +  + L  +RD ++  LN +V +AV+ LI++E
Sbjct: 115 KVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKE 174

Query: 147 REGEQIDRALLKNVLDIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRKASN 197
           R GE I+  L+  V+  +VE+G+ + D          Y+  FE+  L DT  +Y+R+++ 
Sbjct: 175 RNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTE 234

Query: 198 WILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSG 257
           ++ ++   +YM KAE  L  E+ RV  YLH S++ +L  K +  L+  +    LE  H+ 
Sbjct: 235 FLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LEIFHTE 290

Query: 258 CHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEK 317
              LL  DK EDL RM+ L S+I  GL  +  + + H+  +G A ++   +AA N     
Sbjct: 291 FQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALN----- 345

Query: 318 RDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVF------CNKGVAG 371
                   +++V+ V+++H KY A V   F N   F  +L +A   F           + 
Sbjct: 346 ------DPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSS 399

Query: 372 SSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRL 431
           S S ELLA +CD++LKK  S+   +  +E+ L +V+ +  YI DKD+F +FY K LA+RL
Sbjct: 400 SKSPELLARYCDSLLKKS-SKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRL 458

Query: 432 LFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPG 491
           +   SA+DD E S+++KLKQ CG ++TSK++ M  D+ ++++    F+++L+N+      
Sbjct: 459 VHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEP--LD 516

Query: 492 IDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLG 551
           +D ++ VL++G WP  +S    LP+E+ +  + F  FY ++   RKLTW+Y L    L+ 
Sbjct: 517 LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVT 576

Query: 552 KFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 611
                   L  +T+Q + LL +N+ D  +  ++     +  D + ++L  L  +K  +L 
Sbjct: 577 NCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLE 636

Query: 612 KEPNTKT---ISPTDHFEFNSKFTDKMRRIKIPLP----PVDEKKKVIEDVDKDRRYAID 664
            E        + P    +    + +K  R+ I +P       E++   +++++DR+  I 
Sbjct: 637 DENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQ 696

Query: 665 ASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMF 724
           A+IVRIMK RKVL HQQL+ E + QL   FKP    IKK I+ LI ++YLER     + +
Sbjct: 697 AAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTY 756

Query: 725 RYLA 728
            YLA
Sbjct: 757 SYLA 760
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Length = 92 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Length = 77 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query728
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 100.0
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 100.0
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 100.0
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 100.0
3o2p_E88 Cell division control protein 53; ligase, cell cyc 99.93
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 99.93
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 99.92
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 99.92
2jt1_A77 PEFI protein; solution structure, winged helix-tur 85.28
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 84.81
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 84.5
1p4x_A250 Staphylococcal accessory regulator A homologue; wi 84.09
3lmm_A583 Uncharacterized protein; multi-domained alpha-beta 83.83
2dk5_A91 DNA-directed RNA polymerase III 39 kDa polypeptide 81.87
3tgn_A146 ADC operon repressor ADCR; helix-turn-helix, trans 81.03
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 80.53
1y0u_A96 Arsenical resistance operon repressor, putative; s 80.32
3hsr_A140 HTH-type transcriptional regulator SARZ; helix-tur 80.27
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
Probab=100.00  E-value=1.4e-133  Score=1178.01  Aligned_cols=692  Identities=32%  Similarity=0.575  Sum_probs=642.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC----------------------------------Cchh
Q 004841           11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQP----------------------------------HLVS   56 (728)
Q Consensus        11 fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~~----------------------------------~~y~   56 (728)
                      ||++|+.|++||++|+   .+   .+++..+||++|++|||-                                  .+|.
T Consensus         1 f~~~W~~L~~ai~~I~---~~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~   74 (760)
T 1ldj_A            1 LDQIWDDLRAGIQQVY---TR---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK   74 (760)
T ss_dssp             CHHHHHHHHHHHHHHT---TC---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred             ChhhHHHHHHHHHHHH---hc---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHH
Confidence            7899999999999964   33   268999999999999991                                  2366


Q ss_pred             hHHH-HHHHHHHHHhh---hchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCC------CCcHHHHHHHHHHHH
Q 004841           57 AFVN-ILLLVLPSIRE---KHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS------LPPLNEVGLTCFRDL  126 (728)
Q Consensus        57 ~l~~-l~~~v~~~l~~---~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdr~yv~~~~------~~~i~~l~l~~f~~~  126 (728)
                      .+++ +.+|+...+..   ..++.||..|..+|++|+.++++|+++|+||||+||++++      .++|+++||.+||++
T Consensus        75 ~l~~~l~~~l~~~~~~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~  154 (760)
T 1ldj_A           75 RLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDC  154 (760)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHHH
Confidence            7888 88887654433   4568899999999999999999999999999999999976      789999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhccC---------chhchHHHHHHHHHHHHHHHHHHHHHH
Q 004841          127 VYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMG---------QMDYYENDFETAMLKDTAAYYSRKASN  197 (728)
Q Consensus       127 v~~~~~~~l~~~ll~~I~~~R~g~~id~~~l~~~i~ml~~l~~~---------~~~~Y~~~FE~~~L~~t~~yY~~~s~~  197 (728)
                      ||.++++++.++++.+|+++|.|+.+|+.+|+++++||+.||.+         .+.+|.+.||++||++|.+||+.++++
T Consensus       155 vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~  234 (760)
T 1ldj_A          155 LFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTE  234 (760)
T ss_dssp             HTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999853         368999999999999999999999999


Q ss_pred             HHhcCChhHHHHHHHHHHHHHHHHHchhcCCCcHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhcCcHHHHHHHHHhh
Q 004841          198 WILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLF  277 (728)
Q Consensus       198 ~l~~~s~~~Yl~~v~~~l~eE~~r~~~yL~~~t~~kl~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~~L~~ly~L~  277 (728)
                      |+++.++++||++|+.++++|.+||+.||+++|.++|.++|+++||.+|.+.|.    +||..||++++.++|++||+||
T Consensus       235 ~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L~  310 (760)
T 1ldj_A          235 FLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNLV  310 (760)
T ss_dssp             HHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999885    5899999999999999999999


Q ss_pred             ccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 004841          278 SKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSL  357 (728)
Q Consensus       278 ~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~l~~~~~~li~~~F~~~~~f~~~l  357 (728)
                      +++++|++.|+..|++||.+.|.+++....+.           ...++..||+.|+++|++|+.++..||++|+.|..++
T Consensus       311 ~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~-----------~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al  379 (760)
T 1ldj_A          311 SRIQDGLGELKKLLETHIHNQGLAAIEKCGEA-----------ALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAAL  379 (760)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTS-----------GGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHH
T ss_pred             CcCcchHHHHHHHHHHHHHHHHHHHHHHhhcc-----------cccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            99999999999999999999999999764311           1346889999999999999999999999999999999


Q ss_pred             HHHHHHHhcCC------CCCCCcHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHhhhhccccChHHHHHHHHHHHHHHh
Q 004841          358 KEAFEVFCNKG------VAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRL  431 (728)
Q Consensus       358 ~~af~~~~N~~------~~~~~~~e~La~y~d~~lk~~~~~~~~~~~~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RL  431 (728)
                      ++||+.|+|.+      .+..++||+||+|||.+||+|. ++.++++++..|++++.||+|+++||+|+++|+++||+||
T Consensus       380 ~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRL  458 (760)
T 1ldj_A          380 DKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRL  458 (760)
T ss_dssp             HHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCccccccccccccHHHHHHHhHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            99999999986      2346899999999999999875 4568899999999999999999999999999999999999


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhCChhhHhHHHHHHhHHHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCC
Q 004841          432 LFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFD  511 (728)
Q Consensus       432 L~~~s~s~~~E~~~i~~Lk~~~G~~~t~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~  511 (728)
                      |.+++.+.|.|+.||++||.+||.+||++|++||+||..|++++..|++++.++  ...+++|+|.|||+|+||..+..+
T Consensus       459 L~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~~  536 (760)
T 1ldj_A          459 VHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSCT  536 (760)
T ss_dssp             HTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCSC
T ss_pred             cCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCeeEEecCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999988651  224799999999999999988888


Q ss_pred             ccCcHhHHHHHHHHHHHHHhcCCCceEEeccCCceEEEEeEEcCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCC
Q 004841          512 LNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLS  591 (728)
Q Consensus       512 ~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~lg~~~i~~~~~~~~~~l~vs~~Q~~iLllFn~~~~~t~~ei~~~t~i~  591 (728)
                      +.+|++|+.+++.|++||..+|+||+|+|.|++|+|+|+++|++++++++||++||+||++||+.+++|+++|++.||+|
T Consensus       537 ~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~  616 (760)
T 1ldj_A          537 FALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIK  616 (760)
T ss_dssp             CCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCC
T ss_pred             CcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccccccCC-----CCCCCCCCCeEEEecCCCCCCcceeccCCChh----hhhHHHHhHHHhhhhh
Q 004841          592 DDDVVRLLHSLSCAKYKILNKEP-----NTKTISPTDHFEFNSKFTDKMRRIKIPLPPVD----EKKKVIEDVDKDRRYA  662 (728)
Q Consensus       592 ~~~l~~~L~~L~~~k~kiL~~~~-----~~~~i~~~~~~~~N~~F~~~~~~i~i~~~~~~----e~~~~~~~v~~~R~~~  662 (728)
                      +++++++|.+|+  +.+||.+.|     +|+.+.+++.|++|.+|++++.||+||.+...    |.+.+.+.+++||++.
T Consensus       617 ~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~  694 (760)
T 1ldj_A          617 MDILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLL  694 (760)
T ss_dssp             HHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhH
Confidence            999999999997  678998554     78889999999999999999999999866442    3455778899999999


Q ss_pred             hhheeeecccccccCChhHHHHHHHHHhcCCCCCChhHHHHHHHhhhhhhhcccCCCCCCceeecC
Q 004841          663 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA  728 (728)
Q Consensus       663 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yia  728 (728)
                      ||||||||||+||+|+|++|+.+|+++++++|.|++.+||+|||+|||||||+|+++|+++|+|+|
T Consensus       695 i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA  760 (760)
T 1ldj_A          695 IQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA  760 (760)
T ss_dssp             HHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred             heeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence            999999999999999999999999999999999999999999999999999999999999999998
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Back     alignment and structure
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Back     alignment and structure
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 Back     alignment and structure
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 Back     alignment and structure
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 728
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 9e-92
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 4e-87
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 2e-79
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 1e-74
d1iuya_92 a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus muscu 5e-30
d1ldja190 a.4.5.34 (A:687-776) Anaphase promoting complex (A 6e-30
d2hyec184 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapien 2e-28
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  285 bits (730), Expect = 9e-92
 Identities = 110/274 (40%), Positives = 167/274 (60%), Gaps = 2/274 (0%)

Query: 372 SSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRL 431
           +  AEL+A   D+ L+ G +++ +DE +E  L+K++ L  +I  KD+F  FY+K LA+RL
Sbjct: 1   NKPAELIAKHVDSKLRAG-NKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRL 59

Query: 432 LFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPG 491
           L  KSA+ D E+S+L+KLK +CG  FTSK+EGM  D+ L+++    F++++ N  ++ P 
Sbjct: 60  LVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP- 118

Query: 492 IDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLG 551
           IDLTV +LT G+WP+Y   +++L  EM+K  EVF+ FY  K   RKL W  +LG   L  
Sbjct: 119 IDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKA 178

Query: 552 KFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 611
           +F+    E  V+ +Q   LL+FN  D  S+ EI     + D ++ R L SL+C K ++L 
Sbjct: 179 EFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLI 238

Query: 612 KEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPV 645
           K P  K +   D F FN +F  K+ RIKI    +
Sbjct: 239 KSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQM 272
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query728
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d1ldja190 Anaphase promoting complex (APC) {Human (Homo sapi 99.91
d2hyec184 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1iuya_92 Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 1 99.89
d1mkma175 Transcriptional regulator IclR, N-terminal domain 87.6
d1lnwa_141 MexR repressor {Pseudomonas aeruginosa [TaxId: 287 85.55
d1lj9a_144 Transcriptional regulator SlyA {Enterococcus faeca 84.63
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 83.78
d1ylfa1138 Hypothetical protein BC1842 {Bacillus cereus [TaxI 83.46
d2frha1115 Pleiotropic regulator of virulence genes, SarA {St 82.4
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 81.72
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 81.29
d2etha1140 Putative transcriptional regulator TM0816 {Thermot 80.77
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-55  Score=476.50  Aligned_cols=337  Identities=29%  Similarity=0.535  Sum_probs=306.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC----------------------------------chh
Q 004841           11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPH----------------------------------LVS   56 (728)
Q Consensus        11 fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~~~----------------------------------~y~   56 (728)
                      .|++|..|++||++|+   ++   .+++..+||++|++||+-|                                  +|.
T Consensus         1 ~d~~W~~L~~ai~~I~---~~---~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~   74 (394)
T d1ldja2           1 LDQIWDDLRAGIQQVY---TR---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK   74 (394)
T ss_dssp             CHHHHHHHHHHHHHHT---TC---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred             CcchHHHHHHHHHHHH---hc---CCCCHHHHHHHHHHHHHHHhcCCccccccccccchhhhhhccccchhhhHHHHHHH
Confidence            3899999999999964   33   2578889999999999822                                  466


Q ss_pred             hHHH-HHHHHHHHHhh---hchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCC------CCcHHHHHHHHHHHH
Q 004841           57 AFVN-ILLLVLPSIRE---KHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS------LPPLNEVGLTCFRDL  126 (728)
Q Consensus        57 ~l~~-l~~~v~~~l~~---~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdr~yv~~~~------~~~i~~l~l~~f~~~  126 (728)
                      .+++ +..++...+..   ..++++|..+.+.|++|+.++.+|+++|+||||+|+++++      .++|+++|+.+|+++
T Consensus        75 ~l~~~l~~~l~~i~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~~  154 (394)
T d1ldja2          75 RLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDC  154 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHH
Confidence            7788 88887554443   3567899999999999999999999999999999999863      479999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhccC---------chhchHHHHHHHHHHHHHHHHHHHHHH
Q 004841          127 VYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMG---------QMDYYENDFETAMLKDTAAYYSRKASN  197 (728)
Q Consensus       127 v~~~~~~~l~~~ll~~I~~~R~g~~id~~~l~~~i~ml~~l~~~---------~~~~Y~~~FE~~~L~~t~~yY~~~s~~  197 (728)
                      ||.++++++.++++++|+++|+|+.+|+.++++++.||+.||..         ..++|.+.||++||++|.+||++++.+
T Consensus       155 v~~~~~~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~~  234 (394)
T d1ldja2         155 LFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTE  234 (394)
T ss_dssp             HTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999853         457899999999999999999999999


Q ss_pred             HHhcCChhHHHHHHHHHHHHHHHHHchhcCCCcHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhcCcHHHHHHHHHhh
Q 004841          198 WILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLF  277 (728)
Q Consensus       198 ~l~~~s~~~Yl~~v~~~l~eE~~r~~~yL~~~t~~kl~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~~L~~ly~L~  277 (728)
                      |+++.++++|+++|+.++++|.+||+.||+++|.+++.+.|+++||.+|.+.|.    +|+..||++++.++|++||+||
T Consensus       235 ~l~~~~~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l~----~~~~~ll~~~~~~~L~~lY~L~  310 (394)
T d1ldja2         235 FLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNLV  310 (394)
T ss_dssp             HHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHHH
T ss_pred             HHHhCChhHHHHHHHHHHHHHHHHHHHccChhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998873    5899999999999999999999


Q ss_pred             ccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 004841          278 SKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSL  357 (728)
Q Consensus       278 ~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~l~~~~~~li~~~F~~~~~f~~~l  357 (728)
                      +++++|++.|++.|++||.+.|.+++.......           ..++..||+.|+++|++|+.++.+||++|+.|..++
T Consensus       311 ~rv~~~~~~l~~~~~~~I~~~G~~~i~~~~~~~-----------~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l  379 (394)
T d1ldja2         311 SRIQDGLGELKKLLETHIHNQGLAAIEKCGEAA-----------LNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAAL  379 (394)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSG-----------GGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHH
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHHHhhhhcc-----------cCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            999999999999999999999999987643221           346889999999999999999999999999999999


Q ss_pred             HHHHHHHhcCC
Q 004841          358 KEAFEVFCNKG  368 (728)
Q Consensus       358 ~~af~~~~N~~  368 (728)
                      ++||+.|+|++
T Consensus       380 ~~af~~fiN~n  390 (394)
T d1ldja2         380 DKACGRFINNN  390 (394)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHhCcc
Confidence            99999999987
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure