Citrus Sinensis ID: 004844

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------73

MKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

cccccccEEEccccccccccHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHccHHHcccccccEEEEEcccccEEEEcHHHHHHcccccccccccccccccccccccccHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccEEEccccHHHccccccccccccccccccHHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccEEccHHHHHHHHHHHccccEEEEEccccEEEEcccccccccccccccEEEEcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc

ccccccEEEEEcccccccccHHHHHHHcccccHHHHHHHcccccccccccHHEcccccEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEcEEEEccccccEEcccccccEEEccccccccccHHHHHHHHHHHccccccccccEcccccccccccccccccccccccccccccccccccEEcccccccccccHHccccccccEEHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccEEEccccccccccccHHHHHHHHHccccEEEEcHHHccccccccHHHHHHHHHHHHccccccccccEEEEEcccccEEEccHHHHHccccccccccccccEEEEcccccccHHHHHHcHHHHHHHHHccccccccccccccEEEEEEcccccccccccccEEEEEccccHccccccccccEccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccEEccHHHHHHHHHHHccccEEEEEccccEEEEEcccccHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

mkserkyvvpcgkcrtkvyCIQCIKQwypkmseldvaeicpfcrrncncsvclhtsgfietskinmtdceKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRvhsskvgvsetlcgndervycnhCATSIidlhrscpkcsyelcLTCCKEICEGRLSGRAEMKFQYVnrgygymqggdplpesclhqtpdvhvepsvmwsaddngtiscpptemggcgdcVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKaasregsddnllycpdstkiqEDEELFRFQKhwikgepvIVRNVLdkvtglswepMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFfkgytqgrtydnfwpemlklkdwppsdkfedlmprhcdefisalpfqeysdpraGILNLAVklpsgvlkpdlgpktyIAYGVAeelgrgdsvtklhCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVqdgmdesieepnsdnnkedtdvseindsellpsgirgefkmsrdemqgtaftcphsegtmvesggALWDIFRRQDVPKLEAYLRKHFKEFrhvycspveqvihpihdqcfyLSSEHKKKLkeefgvepwtfeqklgeavfipagcphqvrnlkscTKVAvdfvspenvDECLRLTKEFRllpknhrarEDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

mkserkyvvpcgkcrtkvycIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLIldnkltnlrqnraetgtDMLCKAAsregsddnllyCPDSTKIQEDEELFRFQkhwikgepvivRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKEnlvqdgmdesieepnsdnnkedtdvseindsellpsgIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKefrllpknhraredkLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

MKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNIlthteevllteeQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYlssehkkklkeeFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

******YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQ*********L***********NLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLL*****************************************************************************C****GTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIF*

****RKY*VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIE***INMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEA*I*R**SSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCK******************N******************************WSADDNGTISCPPTEMGGCG*CVLELTRIL*****************ILDNK*************************DDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKE***************************************************************************GALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

********VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENV*********EVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMD*****************SEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

****RKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLS**AEMKFQY***************************EPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLK******************************************************************SGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFILLTHIFF

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		728	2.2.26 [Sep-21-2011]
Q5ZIX8		1325	Lysine-specific demethyla	yes	no	0.509	0.28	0.337	4e-54
Q9Y4C1		1321	Lysine-specific demethyla	yes	no	0.509	0.280	0.334	5e-53
Q6IRB8		1331	Lysine-specific demethyla	N/A	no	0.475	0.259	0.337	2e-50
Q5HZN1		1334	Lysine-specific demethyla	N/A	no	0.475	0.259	0.337	5e-50
Q6PCM1		1323	Lysine-specific demethyla	yes	no	0.512	0.281	0.313	3e-45
Q63679		1214	Lysine-specific demethyla	yes	no	0.509	0.305	0.316	4e-45
Q7LBC6		1761	Lysine-specific demethyla	no	no	0.177	0.073	0.518	6e-29
Q6ZPY7		1562	Lysine-specific demethyla	no	no	0.177	0.082	0.518	2e-28
P97609		1181	Protein hairless OS=Rattu	no	no	0.417	0.257	0.280	2e-22
O43593		1189	Protein hairless OS=Homo	no	no	0.398	0.243	0.256	2e-20

>sp\|Q5ZIX8\|KDM3A_CHICK Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1	Back alignment and function desciption

 Score =  213 bits (542), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 162/480 (33%), Positives = 220/480 (45%), Gaps = 109/480 (22%)

Query: 250  ILDNKLTNLRQNRAETGTDM------LCKAASREGSD-------DNLLYCPDSTKIQEDE 296
            ILD+   +L QNR  T TDM      L    +  G D       DN L C      + + 
Sbjct: 909  ILDDIFASLVQNR--TVTDMPKKPQGLTIKPTIMGFDTPHYWLCDNRLLCLQDPNNESNW 966

Query: 297  ELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLA 356
             +FR  + W +G+PV+V  V  K+    W P        E+   E   +  EV  ++C  
Sbjct: 967  NVFR--ECWKQGQPVMVSGVHHKLNADLWRP--------ESFRKEFGQQ--EVDLVNC-- 1012

Query: 357  SCEVEISTRQFFKGYTQGRTYDNFW------------PEMLKLKDWPPSDKFEDLMPRHC 404
                   T +   G T G  +D F             P +LKLKDWPP + F D+MP   
Sbjct: 1013 ------RTNEIITGATVGDFWDGFEDISSRLRTEEGEPMVLKLKDWPPGEDFRDMMPSRF 1066

Query: 405  DEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHC 464
            D+ +  +P  EY+  R G LNLA +LP+  ++PDLGPK Y AYG+     R    T LH 
Sbjct: 1067 DDLMKNIPLPEYTR-RGGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHL 1125

Query: 465  DMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKE 524
            D+SDA N++ +             + + + +   + LK   +QDG               
Sbjct: 1126 DVSDAANVMVYV-----------GIPKGQADQEEEVLK--TIQDG--------------- 1157

Query: 525  DTDVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPK 584
            D+D   I             F  SR                  E  GALW I+  +D  K
Sbjct: 1158 DSDELTIK-----------RFTESR------------------EKPGALWHIYAAKDTEK 1188

Query: 585  LEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEA 644
            +  +L+K  +E      +PV+    PIHDQ +YL    +K+L +E+GV+ W   Q LG+ 
Sbjct: 1189 IREFLKKVAEE--QGQENPVDH--DPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDV 1244

Query: 645  VFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVF 704
            VFIPAG PHQV NL SC KVA DFVSPE+V  C  LT+EFR L   H   EDKL+V  V 
Sbjct: 1245 VFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQVKNVI 1304

Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Preferentially demethylates mono- and dimethylated H3 'Lys-9' residue, with a preference for dimethylated residue, while it has weak or no activity on trimethylated H3 'Lys-9'. Demethylation of Lys residue generates formaldehyde and succinate.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q9Y4C1\|KDM3A_HUMAN Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=4	Back alignment and function description

>sp\|Q6IRB8\|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2 SV=1	Back alignment and function description

>sp\|Q5HZN1\|KD3AB_XENLA Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-b PE=2 SV=1	Back alignment and function description

>sp\|Q6PCM1\|KDM3A_MOUSE Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1	Back alignment and function description

>sp\|Q63679\|KDM3A_RAT Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1	Back alignment and function description

>sp\|Q7LBC6\|KDM3B_HUMAN Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2	Back alignment and function description

>sp\|Q6ZPY7\|KDM3B_MOUSE Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2	Back alignment and function description

>sp\|P97609\|HAIR_RAT Protein hairless OS=Rattus norvegicus GN=Hr PE=2 SV=2	Back alignment and function description

>sp\|O43593\|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		728
255554791		1122	conserved hypothetical protein [Ricinus	0.954	0.619	0.668	0.0
224118074		693	predicted protein [Populus trichocarpa]	0.902	0.948	0.638	0.0
356564476		843	PREDICTED: uncharacterized protein LOC10	0.920	0.794	0.622	0.0
359483388		864	PREDICTED: uncharacterized protein LOC10	0.927	0.781	0.626	0.0
356520089		843	PREDICTED: uncharacterized protein LOC10	0.902	0.779	0.625	0.0
147800953		1016	hypothetical protein VITISV_038746 [Viti	0.925	0.663	0.634	0.0
224115858		700	predicted protein [Populus trichocarpa]	0.910	0.947	0.639	0.0
356557939		1043	PREDICTED: uncharacterized protein LOC10	0.914	0.638	0.622	0.0
357480367		870	Lysine-specific demethylase 3A-B [Medica	0.934	0.781	0.615	0.0
302144096		646	unnamed protein product [Vitis vinifera]	0.883	0.995	0.605	0.0

>gi\|255554791\|ref\|XP_002518433.1\| conserved hypothetical protein [Ricinus communis] gi\|223542278\|gb\|EEF43820.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/709 (66%), Positives = 570/709 (80%), Gaps = 14/709 (1%)

Query: 1    MKSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIE 60
            MK ERK VVPC KC+ K++C+QCIK+WYP+M+E ++AE CPFCRRNCNC++CLH+SG I+
Sbjct: 404  MKYERKIVVPCRKCKCKMFCVQCIKRWYPEMTEEEIAEECPFCRRNCNCNICLHSSGLIK 463

Query: 61   TSKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGN 120
            TSK ++TD EKV+HL+YL+ S+LPF+ QICEEQT E++ EASIQ    S   ++E  C N
Sbjct: 464  TSKRDITDREKVQHLQYLIKSMLPFLEQICEEQTCEMQIEASIQ---GSSPEIAENFCNN 520

Query: 121  DERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQG 180
            DERVYCNHCATSI+D HRSCPKC+YELCL CCKEI EG LS  AE++  YVNRGY YM G
Sbjct: 521  DERVYCNHCATSIVDFHRSCPKCAYELCLGCCKEIREGSLSSHAEIELHYVNRGYDYMHG 580

Query: 181  GDPLPESCLHQTPDVHVEPSV-MWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISD 239
            GDPLP  C  +  D  +EP V +W+A+++G+ISC P EMGGCGD +LEL RILP  WIS+
Sbjct: 581  GDPLP--CDSKNLDDQIEPLVTLWNANNDGSISCAPKEMGGCGDNLLELKRILPMGWISE 638

Query: 240  LEKEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELF 299
            L  + R+L+ + DN+ T+L  N +E G+D L KAASREGS+DN L+CP    IQ D+EL 
Sbjct: 639  LIWKGRELLKLFDNEKTSLMCNYSEPGSDTLRKAASREGSEDNYLFCPALNGIQADQELL 698

Query: 300  RFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCE 359
            RFQKHW+KGEPVIVR+ L+  T LSWEPMVMWRALCENVD E ++KMSEVKAIDCLASC+
Sbjct: 699  RFQKHWLKGEPVIVRDTLEVTTHLSWEPMVMWRALCENVDLETNAKMSEVKAIDCLASCQ 758

Query: 360  VEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDP 419
            VEI+TRQFFKGYT GRTY+NFWPEMLKLKDWPPSDKFEDL+PRHCDEFISALPFQEYSDP
Sbjct: 759  VEINTRQFFKGYTGGRTYENFWPEMLKLKDWPPSDKFEDLLPRHCDEFISALPFQEYSDP 818

Query: 420  RAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEV 479
            +AGILN+AVK P G+LKPDLGPKTYIAYG  EELGRGDSVTKLHCDMSDAVNILTH  EV
Sbjct: 819  KAGILNIAVKFPPGLLKPDLGPKTYIAYGTKEELGRGDSVTKLHCDMSDAVNILTHAVEV 878

Query: 480  LLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNS---DNNKEDTDVSEINDSEL 536
             L+EEQ + +E+LK +H AQD KE L +D ++  + E      D+  ED D+ +I ++E 
Sbjct: 879  ALSEEQSTCIEQLKMKHSAQDEKEYLERDKVNSHLIEQLDECIDSLSEDMDLLKIRETEK 938

Query: 537  LPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEF 596
              S +  +     +E++G   T   +      S GALWDIFRR+DVPKLE YLRK+  EF
Sbjct: 939  HSSALETD-----NELRGDTPTDESTGAATAGSSGALWDIFRREDVPKLEEYLRKYHMEF 993

Query: 597  RHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVR 656
            RH YCSPVE+V+HPIHDQCFYL+ EHK+KLKEE+GVEPWTFEQ++GEA+FIPAGCPHQVR
Sbjct: 994  RHTYCSPVEKVVHPIHDQCFYLTLEHKRKLKEEYGVEPWTFEQRVGEAIFIPAGCPHQVR 1053

Query: 657  NLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFI 705
            NLKSCTKVAVDFVSPEN+ ECL LT+EFR LPKNHRAREDKLE+  + +
Sbjct: 1054 NLKSCTKVAVDFVSPENIHECLLLTEEFRQLPKNHRAREDKLEIKKMIV 1102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224118074\|ref\|XP_002331551.1\| predicted protein [Populus trichocarpa] gi\|222873775\|gb\|EEF10906.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356564476\|ref\|XP_003550480.1\| PREDICTED: uncharacterized protein LOC100806419 [Glycine max]	Back alignment and taxonomy information

>gi\|359483388\|ref\|XP_002264179.2\| PREDICTED: uncharacterized protein LOC100250303 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356520089\|ref\|XP_003528698.1\| PREDICTED: uncharacterized protein LOC100797860 [Glycine max]	Back alignment and taxonomy information

>gi\|147800953\|emb\|CAN60121.1\| hypothetical protein VITISV_038746 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224115858\|ref\|XP_002317142.1\| predicted protein [Populus trichocarpa] gi\|222860207\|gb\|EEE97754.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356557939\|ref\|XP_003547267.1\| PREDICTED: uncharacterized protein LOC100801772 [Glycine max]	Back alignment and taxonomy information

>gi\|357480367\|ref\|XP_003610469.1\| Lysine-specific demethylase 3A-B [Medicago truncatula] gi\|355511524\|gb\|AES92666.1\| Lysine-specific demethylase 3A-B [Medicago truncatula]	Back alignment and taxonomy information

>gi\|302144096\|emb\|CBI23201.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		728
TAIR\|locus:2008875		875	AT1G11950 "AT1G11950" [Arabido	0.708	0.589	0.595	1.1e-227
TAIR\|locus:2027109		883	AT1G62310 "AT1G62310" [Arabido	0.725	0.597	0.570	1.2e-225
TAIR\|locus:2125221		840	AT4G00990 "AT4G00990" [Arabido	0.704	0.610	0.417	6.2e-157
TAIR\|locus:2036014		944	AT1G09060 "AT1G09060" [Arabido	0.648	0.5	0.352	3.8e-112
TAIR\|locus:2141221		927	B160 "AT4G21430" [Arabidopsis	0.663	0.521	0.312	4.7e-80
MGI\|MGI:1923356		1562	Kdm3b "KDM3B lysine (K)-specif	0.177	0.082	0.481	2.7e-49
UNIPROTKB\|E1BE97		1759	LOC100848816 "Uncharacterized	0.177	0.073	0.481	3.4e-49
UNIPROTKB\|Q7LBC6		1761	KDM3B "Lysine-specific demethy	0.177	0.073	0.481	3.4e-49
UNIPROTKB\|F1NJZ2		1755	KDM3B "Uncharacterized protein	0.177	0.073	0.481	5.4e-49
UNIPROTKB\|F1RH75		1766	KDM3B "Uncharacterized protein	0.177	0.073	0.481	7.1e-49

TAIR\|locus:2008875 AT1G11950 "AT1G11950" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1672 (593.6 bits), Expect = 1.1e-227, Sum P(2) = 1.1e-227
 Identities = 309/519 (59%), Positives = 382/519 (73%)

Query:     2 KSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIET 61
             K ER+Y+  C  C  ++YC  CIK+WYP +S  D+ E CPFCR  CNC  CLH+SG IET
Sbjct:   198 KGERRYLFICTFCEVRLYCFPCIKKWYPHLSTDDILEKCPFCRGTCNCCTCLHSSGLIET 257

Query:    62 SKINMTDCEKVEHLRYLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGND 121
             SK  +   E+  HLR+L+V++LPF++++C+ Q QEIE EA +Q   +S+V +SE+LC N+
Sbjct:   258 SKRKLDKYERFYHLRFLIVAMLPFLKKLCKAQDQEIETEAKVQDSMASQVDISESLCSNE 317

Query:   122 ERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNRGYGYMQGG 181
             ERV+CNHCATSI+DLHRSCPKCSYELCL CC+EI  G LS R E + Q+  RG  Y+ G 
Sbjct:   318 ERVFCNHCATSIVDLHRSCPKCSYELCLNCCQEIRGGWLSDRPECQLQFEYRGTRYIHGE 377

Query:   182 DPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDRWISDLE 241
                P S    + D    PS+ W+AD+NG+I C P E+GGCGD VLEL RILP  W+SDLE
Sbjct:   378 AAEPSSS-SVSEDETKTPSIKWNADENGSIRCAPKELGGCGDSVLELKRILPVTWMSDLE 436

Query:   242 KEARDLVLILDNKLTNLRQNRAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRF 301
             ++A   +     K        +   + M  KAASR+GS DN LY PDS  + + EEL  F
Sbjct:   437 QKAETFLASYSIKPPMSYCRCSSDMSSMKRKAASRDGSSDNYLYSPDSLDVLKQEELLHF 496

Query:   302 QKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVE 361
             Q+HW KGEPVIVRN L+   GLSWEPMVMWRALCENVDS +SS MS+VKAIDCLA+CEV+
Sbjct:   497 QEHWSKGEPVIVRNALNNTAGLSWEPMVMWRALCENVDSAISSNMSDVKAIDCLANCEVK 556

Query:   362 ISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRA 421
             I+T  FF+GY++GRTY+NFWPEMLKLKDWPPSDKFE+L+PRHCDEFISALPFQEYSDPR+
Sbjct:   557 INTLCFFEGYSKGRTYENFWPEMLKLKDWPPSDKFENLLPRHCDEFISALPFQEYSDPRS 616

Query:   422 GILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNIXXXXXXXXX 481
             GILN+A KLP G+LKPDLGPKTY+AYG ++ELGRGDSVTKLHCDMSDAVNI         
Sbjct:   617 GILNIATKLPEGLLKPDLGPKTYVAYGTSDELGRGDSVTKLHCDMSDAVNILMHTAEVTL 676

Query:   482 XXXQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSD 520
                Q SA+  LK++H+ Q+ KE   Q+G++E  EE  SD
Sbjct:   677 SEEQRSAIADLKQKHKQQNEKELQEQNGLEE--EEVVSD 713

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR\|locus:2027109 AT1G62310 "AT1G62310" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125221 AT4G00990 "AT4G00990" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2036014 AT1G09060 "AT1G09060" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2141221 B160 "AT4G21430" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

MGI\|MGI:1923356 Kdm3b "KDM3B lysine (K)-specific demethylase 3B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BE97 LOC100848816 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7LBC6 KDM3B "Lysine-specific demethylase 3B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NJZ2 KDM3B "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RH75 KDM3B "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		728
pfam02373		114	pfam02373, JmjC, JmjC domain, hydroxylase	3e-15
smart00558		58	smart00558, JmjC, A domain family that is part of	3e-08

>gnl\|CDD\|202224 pfam02373, JmjC, JmjC domain, hydroxylase	Back alignment and domain information

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 28/112 (25%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 558 TCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRK-HFKEFRHVYCSPVEQVIHPIHDQCF 616
           T  H E          +  F    V  +        F++      S       P      
Sbjct: 11  TPWHIE--DQGLYSINYLHFGGPKVWYIIPSEYAEKFEKV----LSKHNGGEQPDL-LLH 63

Query: 617 YLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDF 668
             +    K+L E  G+  + F QK GE VF   G  HQV NL      AV+F
Sbjct: 64  LNTIISPKQLLEN-GIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114

>gnl\|CDD\|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		728
KOG1356		889	consensus Putative transcription factor 5qNCA, con	100.0
PF02373		114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	99.51
PF13621		251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	99.01
PF10497		105	zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida	98.43
smart00558		57	JmjC A domain family that is part of the cupin met	96.86
KOG2131		427	consensus Uncharacterized conserved protein, conta	96.7
cd02340		43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	95.68
cd02249		46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	95.14
KOG1356		889	consensus Putative transcription factor 5qNCA, con	95.07
cd02335		49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	95.06
cd02339		45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	94.47
PF00569		46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	94.38
smart00291		44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	93.58
PF07883		71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	93.17
KOG2130		407	consensus Phosphatidylserine-specific receptor Ptd	93.11
cd02344		45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	92.9
COG1917		131	Uncharacterized conserved protein, contains double	92.6
cd02341		48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	92.38
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	91.15
cd02338		49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	90.6
cd02345		49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	90.37
COG0662		127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	90.27
PHA02926		242	zinc finger-like protein; Provisional	87.92
cd02337		41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	87.89
TIGR03214		260	ura-cupin putative allantoin catabolism protein. T	87.03
cd02334		49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	84.28
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	83.7
PRK09943		185	DNA-binding transcriptional repressor PuuR; Provis	82.43
PRK13290		125	ectC L-ectoine synthase; Reviewed	81.77
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	80.87
PF07649		30	C1_3: C1-like domain; InterPro: IPR011424 This sho	80.73
cd02343		48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	80.71

>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.2e-181  Score=1521.55  Aligned_cols=628  Identities=42%  Similarity=0.719  Sum_probs=565.4

Q ss_pred             CCCCCceEecCCCCCcccccchhhhhCCCCCHHHHHhhCCCCCCCcccccccCcCCcccccccC----CChHHHHHHHH-
Q 004844            2 KSERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHTSGFIETSKIN----MTDCEKVEHLR-   76 (728)
Q Consensus         2 r~d~~~vv~C~~C~rk~fC~~CI~~wYp~lt~~di~~~CP~Crg~CNCk~CLr~~~~i~~~k~e----~~~~~k~~~~~-   76 (728)
                      +.++..+-+|++|+-+ ||++|++.|||.++.+|++++|+||+.+|||..|++..+++.+.+..    .+..+++.++. 
T Consensus       237 ~tlfn~hw~C~~C~~~-~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~~~~~~~h~~r~  315 (889)
T KOG1356|consen  237 TTLFNIHWRCPRCGFG-VCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSALLDLSDRVHAVRE  315 (889)
T ss_pred             ccccceeEEccccCCe-eeecchhhccccchHhHhhhhhhHHHHhcCCccccchhhcccccccchhhhhhHHHHHHHHHH
Confidence            4566678899999976 99999999999999999999999999999999999999999988776    77789999999 


Q ss_pred             -HHHHHHhhhhHhhcHHHhhhhhhhhhhccccCCcccccccccCCCCceecCCcccccccccccCCCCCcccchhchHHH
Q 004844           77 -YLMVSLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEI  155 (728)
Q Consensus        77 -yll~~lLP~lk~i~~EQ~~E~e~Eaki~G~~~s~~~i~~a~~~~DER~~CD~C~tSI~D~HRsC~~CsydLCL~CC~El  155 (728)
                       |+|..++|+|+.++..|-.+.+.||+|||..++. +++.+...++|++|||+|.|||.|+||+||+|+|++||.||.+|
T Consensus       316 k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~-~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s~~~~l~~~~~i  394 (889)
T KOG1356|consen  316 KFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTS-KPPVTQANPEEPLYCDHCATSIGDLKRSCPDSSYAICLPWLADL  394 (889)
T ss_pred             HhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCC-CccccccCcCCCccccccccchhhccccCCCccccccchHHHHh
Confidence             9999999999999999999999999999999988 77777778899999999999999999999999999999999999


Q ss_pred             hcCcCCCccccceeeeccCcccccCCCCCCCccCCCCCCCCCCCCcccccCCCCCccCCCCCCCCCCCcceeccccCCch
Q 004844          156 CEGRLSGRAEMKFQYVNRGYGYMQGGDPLPESCLHQTPDVHVEPSVMWSADDNGTISCPPTEMGGCGDCVLELTRILPDR  235 (728)
Q Consensus       156 R~g~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~W~a~~dGsI~CpP~e~ggCg~~~L~L~~if~~~  235 (728)
                      |+|.+.-..+..+.|.+||..|.||.++...+-......   .+++   ++++|+|.|-|...+||+...|+|||++|..
T Consensus       395 ~~g~l~~~~e~~~~~~~r~~~~~~g~~~~~~~~~s~~~~---~~~~---~~~ng~~r~l~~~~~g~~~~~l~lkr~lpn~  468 (889)
T KOG1356|consen  395 RRGDLKEKEECELMLRSRGVKYEHGPDPIEPSLSSVSVD---EPSS---ANENGSLRDLLLSLAGCLDRGLKLKRILPNI  468 (889)
T ss_pred             hcCCcccchhHHHHHHHHHHHhhcCccccccccCCCCCC---CCcc---cccccchhhcccccCccchhhhhhhhcCchH
Confidence            999887766668889999999999988764332211111   1122   8899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhcccccccccC-cccCCcccchhccccCCCCCCeeecCCCCCcCchhhHHHHHHHhhcCCCEEEE
Q 004844          236 WISDLEKEARDLVLILDNKLTNLRQN-RAETGTDMLCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVR  314 (728)
Q Consensus       236 ~i~~L~~~aee~~~~~~~~~~~~~~c-~~~~~~~~~r~aa~re~s~dn~lYcP~~~d~~~~~~l~~FQ~hW~kGePVIVr  314 (728)
                      |.+.++..||.-+..+-+.... .-| +...+.+.++++|.|+.+.|||||||.+.+.+. +|+.|||+||++|||||||
T Consensus       469 ~~s~i~~~vE~k~~~~~~~~~l-~~~~~~~~~~~~~~s~~~~~~~cdn~Ll~l~~d~~~~-~n~~~FQEhWkqGqPViVs  546 (889)
T KOG1356|consen  469 LDSIIASVVENKLTSKLSKPPL-RLCRSSQDGSGLLLSAASHSWLCDNRLLSLKVDPLNQ-NNLKHFQEHWKQGQPVIVS  546 (889)
T ss_pred             HHHHHHHHHHhhcccccCCchh-hcCccccccccCccccCCCCcCCCCceecCccCccch-hHHHHHHHHHhcCCcEEeh
Confidence            9999999999888775544332 233 223456778999999999999999999944554 9999999999999999999


Q ss_pred             ccccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhhccccCCccCCCCccceeecCCCCCCC
Q 004844          315 NVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFKGYTQGRTYDNFWPEMLKLKDWPPSD  394 (728)
Q Consensus       315 ~vl~~~s~lsW~P~~mwra~~e~~~~~~~~~~~~vkaidCl~~~ev~i~~~~Ff~Gy~~gr~~~~~wp~mLKLKDWPps~  394 (728)
                      ||++++++++|+||+|||+|+++.+.-+...+.++.++||++      ++.+||.||++|+++++|||+|||||||||++
T Consensus       547 ~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vLKLKDWpp~~  620 (889)
T KOG1356|consen  547 GVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVLKLKDWPPGE  620 (889)
T ss_pred             HhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCCeeEEeecCCCchH
Confidence            999999999999999999999988766667777888899987      78999999999999999999999999999999


Q ss_pred             chhhhcccchHHHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhhccccccccCCCCCcccccccccchhhhhh
Q 004844          395 KFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILT  474 (728)
Q Consensus       395 ~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~eelgrgdSvTkLH~DmSDAVNIL~  474 (728)
                      +|+++||+||+|||++|||||||| ++|+||||++||.++++||||||||||||+++++|||||||||||||||||||||
T Consensus       621 ~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~dvSDaVNILv  699 (889)
T KOG1356|consen  621 DFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLDVSDAVNILV  699 (889)
T ss_pred             hHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeeceehhhhhhhee
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccchhhHHHHHHHHHHHHhhhhhhhhccCCCcccccCCCCCCCCCCCccccccccCCCCCCcccccccccccccC
Q 004844          475 HTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQG  554 (728)
Q Consensus       475 htaev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  554 (728)
                      ||++++.   +...|++++++..+++..|+.-.                      ++.                      
T Consensus       700 yv~e~~~---~~~~~~~~~k~~~~~~~de~~~~----------------------~~~----------------------  732 (889)
T KOG1356|consen  700 YVGEPPG---QIEQIAKVLKKIQEGDLDEITRS----------------------RIS----------------------  732 (889)
T ss_pred             eeccCCc---hHHhHHHHHHhhhhcchhhhhhh----------------------hcc----------------------
Confidence            9998876   44556666666655543222100                      000                      


Q ss_pred             CccccCCCCCCccCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCcccCCcCCcceeeCHHHHHHHHHHhCccc
Q 004844          555 TAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEP  634 (728)
Q Consensus       555 ~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYLt~~hk~kLkeEyGVep  634 (728)
                                +..+.+|||||||||||||||||||+||++||+|    ++.+|+||||||+||||.+||+||||||||||
T Consensus       733 ----------~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~----~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~  798 (889)
T KOG1356|consen  733 ----------SVSETPGALWHIFRAQDVPKIREYLRKVCKEQGH----EVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEP  798 (889)
T ss_pred             ----------ccccCCcchhhhhhhcchHHHHHHHHHhhHHhcC----CCCcccCCCcccceeccHHHHHHHHHHhCCCc
Confidence                      0136899999999999999999999999999998    78999999999999999999999999999999


Q ss_pred             eEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHHHHhhcCCcccccccchhhhhheeeee
Q 004844          635 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKR  707 (728)
Q Consensus       635 Wtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~~keDkLevkkm~l~~  707 (728)
                      |||+|+||||||||||||||||||+||||||+||||||||.||+|||+|||+||++|.|||||||||||+||+
T Consensus       799 WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLqvK~mi~hA  871 (889)
T KOG1356|consen  799 WTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQVKNMIYHA  871 (889)
T ss_pred             cchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []	Back alignment and domain information

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A	Back alignment and domain information

>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression	Back alignment and domain information

>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily	Back alignment and domain information

>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]	Back alignment and domain information

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type	Back alignment and domain information

>cd02249 ZZ Zinc finger, ZZ type	Back alignment and domain information

>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]	Back alignment and domain information

>cd02335 ZZ_ADA2 Zinc finger, ZZ type	Back alignment and domain information

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type	Back alignment and domain information

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein	Back alignment and domain information

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)	Back alignment and domain information

>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]	Back alignment and domain information

>cd02344 ZZ_HERC2 Zinc finger, ZZ type	Back alignment and domain information

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type	Back alignment and domain information

>cd02345 ZZ_dah Zinc finger, ZZ type	Back alignment and domain information

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>cd02337 ZZ_CBP Zinc finger, ZZ type	Back alignment and domain information

>TIGR03214 ura-cupin putative allantoin catabolism protein	Back alignment and domain information

>cd02334 ZZ_dystrophin Zinc finger, ZZ type	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional	Back alignment and domain information

>PRK13290 ectC L-ectoine synthase; Reviewed	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines	Back alignment and domain information

>cd02343 ZZ_EF Zinc finger, ZZ type	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		728
2ypd_A		392	Crystal Structure Of The Jumonji Domain Of Human Ju		2e-17
2ypd_A		392	Crystal Structure Of The Jumonji Domain Of Human Ju		4e-17

>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji Domain Containing 1c Protein Length = 392

Back alignment and structure

Iteration: 1

Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 14/175 (8%) Query: 301 FQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEV 360 F++ W +G+P +V V K+ + +W+A E++ + +++ ++C S Sbjct: 27 FKECWKQGQPAVVSGVHKKMN------ISLWKA--ESISLDFGDHQADL--LNCKDSIIS 76 Query: 361 EISTRQFFKGYTQ-GRTYDNFWPE--MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYS 417 + ++F+ G+ + + N E +LKLKDWP + F+ +MP ++ + +LP EY Sbjct: 77 NANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYC 136 Query: 418 DPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNI 472 +P G NLA LP ++PDLGP+ AYGV T LH ++SD VNI Sbjct: 137 NPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNI 190

PyMOL of 2ypd

>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji Domain Containing 1c Protein Length = 392

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		728
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2xxz_A		332	Lysine-specific demethylase 6B; oxidoreductase, hi	6e-09
3k2o_A		336	Bifunctional arginine demethylase and lysyl-hydro	3e-07
3avr_A		531	Lysine-specific demethylase 6A; cupin superfamily,	2e-06
3k3o_A		371	PHF8, PHD finger protein 8; histone demethylase, c	3e-06
3kv9_A		397	JMJC domain-containing histone demethylation prote	4e-06
4ask_A		510	Lysine-specific demethylase 6B; oxidoreductase, KD	2e-05
3pua_A		392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	2e-05
2yu1_A		451	JMJC domain-containing histone demethylation PROT;	1e-04
3kv5_D		488	JMJC domain-containing histone demethylation prote	4e-04
3kv4_A		447	PHD finger protein 8; epigenetics, histone CODE, c	5e-04
3ht1_A		145	REMF protein; cupin fold, Zn-binding, antibiotic b	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 80.3 bits (197), Expect = 1e-15
 Identities = 107/715 (14%), Positives = 192/715 (26%), Gaps = 214/715 (29%)

Query: 68  DCEKVEH-LRY---LMVSLLPFIRQI-C---EEQTQEIEFEASIQRVHSSKVGVSET--- 116
           D E  EH  +Y   L V    F+    C   ++  + I  +  I  +  SK  VS T   
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 117 ---LCGNDERVYCNHCATSIIDLHRSCPKCSYELCLTCCKEICEGRLSGRAEMKFQYVNR 173
              L    E +        + ++ R     +Y+  ++  K       S    M  +  +R
Sbjct: 68  FWTLLSKQEEMV----QKFVEEVLRI----NYKFLMSPIKTEQRQP-SMMTRMYIEQRDR 118

Query: 174 GYGYMQGGDPLP----------ESCLHQ---TPDVHVEPSVMWSADDNGTISCPPTEMGG 220
            Y   Q                   L +     +V ++          G        + G
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----------G--------VLG 160

Query: 221 CGDCVL--------ELTRILPDR--WIS-DLEKEARDLVLILDNKLTNLRQNRAETGTDM 269
            G   +        ++   +  +  W++         ++ +L   L  +  N        
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-------- 212

Query: 270 LCKAASREGSDDNLLYCPDSTKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMV 329
                SR     N+     S +     EL R  K       ++   VL  V         
Sbjct: 213 ---WTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLL---VLLNV----QNAKA 258

Query: 330 MWRAL---CENVDSEVSSKMSEVKAIDCL-ASCEVEISTRQFFKGYTQGRTYDNF--WPE 383
            W A    C+ +   ++++  +V   D L A+    IS        T          + +
Sbjct: 259 -WNAFNLSCKIL---LTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 384 MLKLKDWPPSDKFEDLMPRHCD---EFISALP--FQEYSDPRAGILNLAVKLPSGVLKPD 438
             + +D P         PR      E I      +  +       L   ++    VL+P 
Sbjct: 313 C-RPQDLPREVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 439 LGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVER-LKKEHR 497
              K +    V                   + +I T    ++  +   S V   + K H+
Sbjct: 370 EYRKMFDRLSV----------------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 498 AQDLKENLVQDGMDESIEEPNSDNNKEDTDVSEINDSELLPSGIRGEFKMSRDEMQGTAF 557
              +++                   KE T    I    L       E K+  +       
Sbjct: 414 YSLVEK-----------------QPKEST--ISIPSIYL-------ELKVKLENEYAL-- 445

Query: 558 TCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQ--C 615
              H                R      ++ Y     K F      P      P  DQ   
Sbjct: 446 ---H----------------RSI----VDHY--NIPKTFDSDDLIP------PYLDQYFY 474

Query: 616 FYLSSEHKKKLK--EEFGVEPWTF------EQKLGEAVFIPAGCPHQVRNLKSCTKVAVD 667
            ++   H K ++  E   +    F      EQK+             + N          
Sbjct: 475 SHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQ------Q 526

Query: 668 FVSPENVDECLRLTKEFRLLPKNHRAREDKLEVYLVFIKRKCYVHEISSSFVFIL 722
                     L+  K +  +  N    E  +   L F+ +    + I S +  +L
Sbjct: 527 ----------LKFYKPY--ICDNDPKYERLVNAILDFLPK-IEENLICSKYTDLL 568

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332	Back alignment and structure

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336	Back alignment and structure

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531	Back alignment and structure

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371	Back alignment and structure

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397	Back alignment and structure

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510	Back alignment and structure

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392	Back alignment and structure

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Length = 451	Back alignment and structure

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488	Back alignment and structure

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447	Back alignment and structure

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		728
2ypd_A		392	Probable JMJC domain-containing histone demethyla	100.0
4gjz_A		235	Lysine-specific demethylase 8; JMJC, beta barrel,	99.22
3k2o_A		336	Bifunctional arginine demethylase and lysyl-hydro	99.15
3al5_A		338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	98.94
2yu1_A		451	JMJC domain-containing histone demethylation PROT;	98.91
3k3o_A		371	PHF8, PHD finger protein 8; histone demethylase, c	98.9
3kv4_A		447	PHD finger protein 8; epigenetics, histone CODE, c	98.85
3kv5_D		488	JMJC domain-containing histone demethylation prote	98.8
3kv9_A		397	JMJC domain-containing histone demethylation prote	98.8
3d8c_A		349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	98.77
3pua_A		392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	98.7
3pur_A		528	Lysine-specific demethylase 7 homolog; oxidoreduct	97.49
2xxz_A		332	Lysine-specific demethylase 6B; oxidoreductase, hi	97.24
3avr_A		531	Lysine-specific demethylase 6A; cupin superfamily,	97.15
4ask_A		510	Lysine-specific demethylase 6B; oxidoreductase, KD	96.59
3dxt_A		354	JMJC domain-containing histone demethylation PROT;	96.25
3opt_A		373	DNA damage-responsive transcriptional repressor R;	95.42
2ox0_A		381	JMJC domain-containing histone demethylation PROT;	95.27
1iym_A		55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	93.22
1vrb_A		342	Putative asparaginyl hydroxylase; 2636534, structu	92.93
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	92.45
1x4j_A		75	Ring finger protein 38; structural genomics, NPPSF	92.39
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	91.9
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	91.76
2opk_A		112	Hypothetical protein; putative mannose-6-phosphate	91.67
2ea6_A		69	Ring finger protein 4; RNF4, RES4-26, ring domain,	91.61
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	91.4
1yhf_A		115	Hypothetical protein SPY1581; structural genomics,	91.23
3lag_A		98	Uncharacterized protein RPA4178; functionally unkn	91.15
2pfw_A		116	Cupin 2, conserved barrel domain protein; cupin do	91.03
3fjs_A		114	Uncharacterized protein with RMLC-like cupin fold;	90.8
3ht1_A		145	REMF protein; cupin fold, Zn-binding, antibiotic b	90.78
2fc7_A		82	ZZZ3 protein; structure genomics, ZZ domain, struc	90.66
2q30_A		110	Uncharacterized protein; double-stranded beta-heli	90.37
4ayc_A		138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	90.28
2kiz_A		69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	90.22
3h8u_A		125	Uncharacterized conserved protein with double-STR	90.06
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	90.02
1v70_A		105	Probable antibiotics synthesis protein; structural	89.9
4e2g_A		126	Cupin 2 conserved barrel domain protein; MCSG, PSI	89.65
2l0b_A		91	E3 ubiquitin-protein ligase praja-1; zinc finger,	89.45
2fqp_A		97	Hypothetical protein BP2299; double-stranded beta-	89.31
1tot_A		52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	89.26
1juh_A		350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	89.21
2b8m_A		117	Hypothetical protein MJ0764; structural genomics,	89.21
1chc_A		68	Equine herpes virus-1 ring domain; viral protein;	89.2
2ozj_A		114	Cupin 2, conserved barrel; cupin superfamily prote	89.01
2ect_A		78	Ring finger protein 126; metal binding protein, st	88.93
2d8t_A		71	Dactylidin, ring finger protein 146; RNF146, ring	88.93
3d82_A		102	Cupin 2, conserved barrel domain protein; structur	88.55
1o5u_A		101	Novel thermotoga maritima enzyme TM1112; cupin, st	88.47
2xlg_A		239	SLL1785 protein, CUCA; metal binding protein, cupi	88.27
2dip_A		98	Zinc finger SWIM domain-containing protein 2; ZZ d	88.11
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	87.92
2gu9_A		113	Tetracenomycin polyketide synthesis protein; X-RAY	87.85
2y43_A		99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	87.82
3kgz_A		156	Cupin 2 conserved barrel domain protein; metallopr	87.76
3ibm_A		167	Cupin 2, conserved barrel domain protein; cupin 2	87.67
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	87.21
2ozi_A		98	Hypothetical protein RPA4178; APC6210, putative pr	87.08
2ep4_A		74	Ring finger protein 24; zinc binding, ubiquitin, E	86.95
2e5r_A		63	Dystrobrevin alpha; ZZ domain, structural genomics	86.82
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	86.67
3h7j_A		243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	86.59
2ckl_A		108	Polycomb group ring finger protein 4; BMI1, RING1B	86.45
1v87_A		114	Deltex protein 2; ring-H2 domain, zinc-binding dom	86.28
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	86.22
2ecj_A		58	Tripartite motif-containing protein 39; TRIM39, ri	86.12
1jm7_B		117	BARD1, BRCA1-associated ring domain protein 1; rin	86.08
2egp_A		79	Tripartite motif-containing protein 34; ZF-C3HC4 d	85.89
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	85.79
2ecl_A		81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	85.36
2i45_A		107	Hypothetical protein; neisseria meningitidis cupin	85.31
1y9q_A		192	Transcriptional regulator, HTH_3 family; transcrip	85.24
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	84.98
1lr5_A		163	Auxin binding protein 1; beta jellyroll, double st	84.7
2ecw_A		85	Tripartite motif-containing protein 30; metal bind	84.31
3cew_A		125	Uncharacterized cupin protein; all beta-protein, j	83.72
2oa2_A		148	BH2720 protein; 10175341, structural genomics, joi	83.69
3jzv_A		166	Uncharacterized protein RRU_A2000; structural geno	83.48
3l2h_A		162	Putative sugar phosphate isomerase; AFE_0303, stru	83.33
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	83.31
4axo_A		151	EUTQ, ethanolamine utilization protein; structural	83.19
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	82.77
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	82.64
1vj2_A		126	Novel manganese-containing cupin TM1459; structura	82.58
3lwc_A		119	Uncharacterized protein; structural genomics, unkn	82.25
2ecv_A		85	Tripartite motif-containing protein 5; metal bindi	81.8
2ecn_A		70	Ring finger protein 141; RNF141, ring domain, zinc	81.65
4i4a_A		128	Similar to unknown protein; structural genomics, P	81.39
2o8q_A		134	Hypothetical protein; cpuin-like fold, structural	81.22
2ct2_A		88	Tripartite motif protein 32; zinc-finger protein H	81.11
1x82_A		190	Glucose-6-phosphate isomerase; cupin superfamily,	81.07
3bcw_A		123	Uncharacterized protein; structural genomics, join	80.59
3l11_A		115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	80.34
3rns_A		227	Cupin 2 conserved barrel domain protein; structura	80.08
1z6u_A		150	NP95-like ring finger protein isoform B; structura	80.06

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=1.6e-131  Score=1057.86  Aligned_cols=352  Identities=32%  Similarity=0.546  Sum_probs=272.7

Q ss_pred             CCcCchhhHHHHHHHhhcCCCEEEEccccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhhc
Q 004844          290 TKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFK  369 (728)
Q Consensus       290 ~d~~~~~~l~~FQ~hW~kGePVIVr~vl~~~s~lsW~P~~mwra~~e~~~~~~~~~~~~vkaidCl~~~ev~i~~~~Ff~  369 (728)
                      .|..+.+|+.|||+||++|||||||||++++++++|+|++||++|++.          .+++|||++|++++|++++||+
T Consensus        16 ~d~~~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd~----------~~~lidC~~~~~~~i~v~~Ff~   85 (392)
T 2ypd_A           16 KDYKNSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDH----------QADLLNCKDSIISNANVKEFWD   85 (392)
T ss_dssp             CCTTCTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTTS----------CCCCEETTTCCBCSCCHHHHHH
T ss_pred             cCCCCcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcCc----------eeeeeeCCCCccccCcHHHHhh
Confidence            455556899999999999999999999999999999999999998642          3678999999999999999999


Q ss_pred             cccCCcc---CCCCccceeecCCCCCCCchhhhcccchHHHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhhc
Q 004844          370 GYTQGRT---YDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIA  446 (728)
Q Consensus       370 Gy~~gr~---~~~~wp~mLKLKDWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLAskLP~~~lkPDLGPK~YIA  446 (728)
                      ||++++.   ++++||+|||||||||+++|+++||+||+|||++|||||||||+ |+|||||+||+++++||||||||||
T Consensus        86 Gf~~~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiA  164 (392)
T 2ypd_A           86 GFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSA  164 (392)
T ss_dssp             TSSBGGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEE
T ss_pred             hccccccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhhh
Confidence            9998753   57999999999999999999999999999999999999999985 9999999999999999999999999


Q ss_pred             cccccccCCCCCcccccccccchhhhhhcccccccchhhHHHHHHHHHHHHhhhhhhhhccCCCcccccCCCCCCCCCCC
Q 004844          447 YGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDT  526 (728)
Q Consensus       447 YG~~eelgrgdSvTkLH~DmSDAVNIL~htaev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~~~~~~~~~~~~~~d~  526 (728)
                      ||+++++|+|+|||||||||||||||||||++++... ..... ...+++.+++..+.+                     
T Consensus       165 YG~~~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~-~~~~~-~~l~~~~~~~~d~~~---------------------  221 (392)
T 2ypd_A          165 YGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNG-ILSKA-GILKKFEEEDLDDIL---------------------  221 (392)
T ss_dssp             CCSTTTTCTTCCSEEEEECSSEEEEEEEEEECCBCTT-CCCHH-HHHHHHHTSCCCHHH---------------------
T ss_pred             cCcchhcccCCCcceeeeehhhhhhhhheecccCccc-cchhh-hhhhhhhhccccHHH---------------------
Confidence            9999999999999999999999999999998654222 11111 111222211110000                     


Q ss_pred             ccccccccCCCCCCcccccccccccccCCccccCCCCCCccCCCceEEEeecCCChhHHHHHHHHHHHhhccccCCCCCc
Q 004844          527 DVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQ  606 (728)
Q Consensus       527 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~  606 (728)
                       .                .++.+                ..+.+||+||||||||++|||+||++|++||.    .++.+
T Consensus       222 -~----------------~r~~~----------------~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~----~~~~~  264 (392)
T 2ypd_A          222 -R----------------KRLKD----------------SSEIPGALWHIYAGKDVDKIREFLQKISKEQG----LEVLP  264 (392)
T ss_dssp             -H----------------HHHTC----------------TTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC---------
T ss_pred             -h----------------hhccC----------------CCCCCCceeeeeCHhhHHHHHHHHHHHHHhhC----CCccC
Confidence             0                00000                13578999999999999999999999999984    46788


Q ss_pred             ccCCcCCcceeeCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccccccccccCCccHHHHHHHHHHhhc
Q 004844          607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRL  686 (728)
Q Consensus       607 v~dPIHDQ~fYLt~~hk~kLkeEyGVepWtf~Q~~GEAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~  686 (728)
                      +.||||||+||||++||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||++|++||+|||+
T Consensus       265 ~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~  344 (392)
T 2ypd_A          265 EHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRL  344 (392)
T ss_dssp             -CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC--
T ss_pred             CCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccchhhhhheeeeehhhhhc
Q 004844          687 LPKNHRAREDKLEVYLVFIKRKCYVHE  713 (728)
Q Consensus       687 Lp~~H~~keDkLevkkm~l~~~~~~~~  713 (728)
                      || +|++||||||||||+||++..+..
T Consensus       345 l~-~~~~~edkLqvk~m~~~av~~av~  370 (392)
T 2ypd_A          345 LK-EEINYDDKLQVKNILYHAVKEMVR  370 (392)
T ss_dssp             ---------------------------
T ss_pred             cc-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence            96 699999999999999998665543

PyMOL of 2ypd

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*	Back alignment and structure

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*	Back alignment and structure

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*	Back alignment and structure

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A	Back alignment and structure

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*	Back alignment and structure

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}	Back alignment and structure

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*	Back alignment and structure

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*	Back alignment and structure

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...	Back alignment and structure

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*	Back alignment and structure

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*	Back alignment and structure

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}	Back alignment and structure

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*	Back alignment and structure

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*	Back alignment and structure

>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*	Back alignment and structure

>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*	Back alignment and structure

>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*	Back alignment and structure

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1	Back alignment and structure

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}	Back alignment and structure

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A	Back alignment and structure

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}	Back alignment and structure

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}	Back alignment and structure

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9	Back alignment and structure

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}	Back alignment and structure

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}	Back alignment and structure

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}	Back alignment and structure

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A	Back alignment and structure

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6	Back alignment and structure

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}	Back alignment and structure

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C	Back alignment and structure

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A	Back alignment and structure

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}	Back alignment and structure

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}	Back alignment and structure

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}	Back alignment and structure

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6	Back alignment and structure

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*	Back alignment and structure

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18	Back alignment and structure

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1	Back alignment and structure

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}	Back alignment and structure

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}	Back alignment and structure

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A	Back alignment and structure

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A	Back alignment and structure

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A	Back alignment and structure

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}	Back alignment and structure

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}	Back alignment and structure

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B	Back alignment and structure

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*	Back alignment and structure

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A	Back alignment and structure

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}	Back alignment and structure

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}	Back alignment and structure

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}	Back alignment and structure

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*	Back alignment and structure

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}	Back alignment and structure

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}	Back alignment and structure

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}	Back alignment and structure

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}	Back alignment and structure

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}	Back alignment and structure

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10	Back alignment and structure

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}	Back alignment and structure

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}	Back alignment and structure

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}	Back alignment and structure

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*	Back alignment and structure

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}	Back alignment and structure

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}	Back alignment and structure

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}	Back alignment and structure

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		728
d1vrba1		319	b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla	2e-04

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 8/52 (15%), Positives = 20/52 (38%)

Query: 624 KKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVD 675
               +E   +        G  +++P G  H  ++ ++   + + F  P  +D
Sbjct: 188 GDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLD 239

PyMOL of d1vrba1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		728
d1h2ka_		335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	98.97
d1vrba1		319	Putative asparaginyl hydroxylase YxbC {Bacillus su	98.78
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	94.84
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	94.06
d1vj2a_		114	Hypothetical protein TM1459 {Thermotoga maritima [	94.01
d1v70a_		105	Hypothetical protein TTHA0104 {Thermus thermophilu	93.66
d2b8ma1		108	Hypothetical protein MJ0764 {Archaeon Methanococcu	92.96
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	92.45
d1yhfa1		112	Hypothetical protein SPy1581 {Streptococcus pyogen	92.38
d2fc7a1		69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	92.34
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	91.83
d1rc6a_		253	Hypothetical protein YlbA {Escherichia coli [TaxId	90.92
d2dipa1		85	Zinc finger ZZ-type-containing protein 2 {Human (H	90.75
d1o4ta_		115	Hypothetical protein TM1287 {Thermotoga maritima [	90.0
d1lr5a_		160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	89.99
d3dplr1		88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	89.14
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	89.09
d1sefa_		250	Hypothetical protein EF2996 {Enterococcus faecalis	87.72
d2bnma2		122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	86.76
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	86.51
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	84.47
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	84.39
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	83.58
d1sfna_		245	Hypothetical protein DR1152 {Deinococcus radiodura	83.37
d2baya1		56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	82.88
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	82.05
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	80.87
d1sq4a_		273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	80.44
d1x82a_		190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	80.05

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=8.3e-11  Score=121.38  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=34.6

Q ss_pred             CccceEEEeecCceeEecCCCccccccccc-cccccccc
Q 004844          631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS-CTKVAVDF  668 (728)
Q Consensus       631 GVepWtf~Q~~GEAVFIPAGcPHQVrNL~S-CIKVAlDF  668 (728)
                      ++.+|.+++.+||++|||+|..|||+||.+ +|.|++.|
T Consensus       243 ~~~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~  281 (335)
T d1h2ka_         243 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF  281 (335)
T ss_dssp             GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred             cCCceEEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEe
Confidence            457999999999999999999999999965 89999887

PyMOL of d1h2ka_

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}	Back information, alignment and structure

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure