Citrus Sinensis ID: 004874
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 726 | 2.2.26 [Sep-21-2011] | |||||||
| Q14149 | 939 | MORC family CW-type zinc | yes | no | 0.516 | 0.399 | 0.299 | 7e-39 | |
| Q8BMD7 | 928 | MORC family CW-type zinc | no | no | 0.578 | 0.452 | 0.296 | 8e-36 | |
| Q8TE76 | 937 | MORC family CW-type zinc | no | no | 0.542 | 0.420 | 0.291 | 1e-32 | |
| Q8C5W4 | 1022 | MORC family CW-type zinc | no | no | 0.249 | 0.177 | 0.311 | 2e-18 | |
| Q69ZX6 | 1030 | MORC family CW-type zinc | no | no | 0.249 | 0.175 | 0.316 | 4e-18 | |
| Q9Y6X9 | 1032 | MORC family CW-type zinc | no | no | 0.249 | 0.175 | 0.316 | 4e-18 | |
| Q9WVL5 | 950 | MORC family CW-type zinc | no | no | 0.267 | 0.204 | 0.283 | 3e-16 | |
| Q86VD1 | 984 | MORC family CW-type zinc | no | no | 0.263 | 0.194 | 0.283 | 7e-16 |
| >sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 162 bits (411), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 137/458 (29%), Positives = 217/458 (47%), Gaps = 83/458 (18%)
Query: 241 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 300
P +L T +H+ W F A+AEL+DN+ D +I I+ K D L+ D+G+
Sbjct: 16 PKFLHTNSTSHT-WPFSAVAELIDNAYDPDVNAKQIWID----KTVINDHICLTFTDNGN 70
Query: 301 GMTHQDVVRMTYFGHKQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 359
GMT + +M FG + + +G +G GFK+G+MRLGKDA+V T+ +S S+ L
Sbjct: 71 GMTSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFTKNGESMSVGLL 130
Query: 360 SQSLNQ--GKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFN--KYLIG 415
SQ+ + +++ +PIV++ + Q + L A +K +L +I E S F+ + L+
Sbjct: 131 SQTYLEVIKAEHVVVPIVAFNKHRQMINL-------AESKASLAAILEHSLFSTEQKLLA 183
Query: 416 EKAGLFQDKCTGTQIYIWNLDQW--GSNYCLEWD----------NGLNGGSSFH------ 457
E + K GT+I IWNL + + + E D + + G +
Sbjct: 184 ELDAIIGKK--GTRIIIWNLRSYKNATEFDFEKDKYDIRIPEDLDEITGKKGYKKQERMD 241
Query: 458 ----QGDILIRSR----RIRSRPGQI--SQKVRSRPLAKSLNKTCVETGI----IMGKSA 503
+ D +R+ ++ R I QKV+++ ++KSL +E + + K+
Sbjct: 242 QIAPESDYSLRAYCSILYLKPRMQIILRGQKVKTQLVSKSL--AYIERDVYRPKFLSKTV 299
Query: 504 HLTLGRCQLEWEQMNC------GIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSD 557
+T G NC GI +Y RLI+AY++VG + + G GV+G+I
Sbjct: 300 RITFG--------FNCRNKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGII---- 347
Query: 558 LMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWD------NKFDSLNVVKDGAL 611
E N L H NKQ F Y LG+ ++YW+ N LN+ +
Sbjct: 348 ---ECNFLKPTH-NKQDFDYTNEYRLTITALGEKLNDYWNEMKVKKNTEYPLNLPVEDIQ 403
Query: 612 YKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP 649
+PDQ WVQC+ C KWR L G D LP +W+C P
Sbjct: 404 KRPDQTWVQCDACLKWRKLPDGMD--QLPEKWYCSNNP 439
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Homo sapiens (taxid: 9606) |
| >sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 726 | ||||||
| 255583448 | 754 | zinc finger protein, putative [Ricinus c | 0.951 | 0.916 | 0.629 | 0.0 | |
| 359476999 | 760 | PREDICTED: MORC family CW-type zinc fing | 0.957 | 0.914 | 0.593 | 0.0 | |
| 296088514 | 596 | unnamed protein product [Vitis vinifera] | 0.736 | 0.897 | 0.653 | 0.0 | |
| 356495297 | 692 | PREDICTED: MORC family CW-type zinc fing | 0.761 | 0.799 | 0.580 | 0.0 | |
| 115468994 | 792 | Os06g0622000 [Oryza sativa Japonica Grou | 0.920 | 0.843 | 0.476 | 0.0 | |
| 222635901 | 800 | hypothetical protein OsJ_22008 [Oryza sa | 0.920 | 0.835 | 0.476 | 0.0 | |
| 357484261 | 577 | MORC family CW-type zinc finger protein | 0.724 | 0.911 | 0.592 | 0.0 | |
| 218198566 | 766 | hypothetical protein OsI_23737 [Oryza sa | 0.873 | 0.827 | 0.440 | 1e-168 | |
| 242096394 | 758 | hypothetical protein SORBIDRAFT_10g02439 | 0.874 | 0.837 | 0.418 | 1e-160 | |
| 413954785 | 785 | hypothetical protein ZEAMMB73_569962 [Ze | 0.852 | 0.788 | 0.443 | 1e-157 |
| >gi|255583448|ref|XP_002532483.1| zinc finger protein, putative [Ricinus communis] gi|223527808|gb|EEF29907.1| zinc finger protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/737 (62%), Positives = 545/737 (73%), Gaps = 46/737 (6%)
Query: 23 DSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKI-ILDGMSHCFLSPAPECS 81
D + Y+ L KD KPICRT+CLNPP +P WN++DI+P SK+ I DG+ HCFL PA E +
Sbjct: 31 DCKLYVFLMKDGKPICRTQCLNPPAEVPQSWNIHDIIPRSKMNIYDGLPHCFLRPAAENN 90
Query: 82 RDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRG 141
RD NEW+RFL YLQ R+ V IAKF+F FYILPP + NF++++VAY+ EKT N + +
Sbjct: 91 RDQNEWQRFLSYLQKRNSVGIAKFEFCNFYILPPAEAYNFSHVKVAYR-EKTSNKYSHQK 149
Query: 142 HGES----GRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSP 197
H ES +CQ V + T+P + +R N ++A EDN +
Sbjct: 150 HCESVVDTTEACQFV--GCNLDPVETCGTVPSQSAERFTARKNVHMKASDQGIIEDNETS 207
Query: 198 VLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFG 257
+KFS +GD L E TI R + RAVKQ GPL +N+VRADPSYLQTLGQAHSGWIFG
Sbjct: 208 YVKFSQSIGDPLGHEPTI----RHQRRAVKQDGPLMENYVRADPSYLQTLGQAHSGWIFG 263
Query: 258 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 317
AIAELVDNSRDAKA++L+I IE+IY K+AGKDIPMLSIIDDGHGMTHQ+V+RMT FGHKQ
Sbjct: 264 AIAELVDNSRDAKASRLDILIETIYSKRAGKDIPMLSIIDDGHGMTHQEVMRMTCFGHKQ 323
Query: 318 PDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY 377
PD DD +RIGRFGVGFKTGAMRLG+DALVLTQT+ SRSIAFLSQSLN+G DNLEIPIVSY
Sbjct: 324 PDVDDLDRIGRFGVGFKTGAMRLGRDALVLTQTSCSRSIAFLSQSLNEGNDNLEIPIVSY 383
Query: 378 YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437
RKGQFME+DT VQSEA AK NLK+IKE S F+KYLIGEKAGLF K TGTQIYIWNLD+
Sbjct: 384 RRKGQFMEVDTNVQSEALAKNNLKAIKELSHFDKYLIGEKAGLFHGKHTGTQIYIWNLDE 443
Query: 438 WGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQK------------------- 478
WGS YCL+W GLNG SSFHQGDILIRS+R+RSRPGQ++QK
Sbjct: 444 WGSGYCLDWTTGLNGWSSFHQGDILIRSKRVRSRPGQMTQKVPLDYSLRSYLEVIFLVPR 503
Query: 479 ---------VRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRL 529
V+SRPLAKSL+ TC T I+GK HLTLGRCQLEWEQ N GIFLYWHGRL
Sbjct: 504 MRIYVQGSLVKSRPLAKSLSMTCEATDNILGKRVHLTLGRCQLEWEQGNSGIFLYWHGRL 563
Query: 530 IEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLG 589
IEAYKRVGGM H G G GVIGVIDV+DLMD GNG VWVH+NKQGF DCEPY RLE WLG
Sbjct: 564 IEAYKRVGGMAH-GKVGLGVIGVIDVTDLMDNGNGRVWVHSNKQGFQDCEPYVRLENWLG 622
Query: 590 KVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP 649
K DEYWDN FD++ + K G LYKPDQEWVQC++CRKWR+L G+D K+L +EWFCYM+P
Sbjct: 623 KKVDEYWDNNFDTVPLKKGGVLYKPDQEWVQCDRCRKWRILCAGYDRKNLLLEWFCYMEP 682
Query: 650 FEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDS 709
F+G C+ PEQK GV+TVS +R+GYD RE++ E A I E S + + ++
Sbjct: 683 FQGSCETPEQKAKHGVITVSTRRSGYD-REDA---EDDAIITSEGNSDEDVDQTKKVGKQ 738
Query: 710 SPLKRIRRGLPRACKKV 726
KRIR+GLPRACKKV
Sbjct: 739 G-FKRIRKGLPRACKKV 754
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476999|ref|XP_002263942.2| PREDICTED: MORC family CW-type zinc finger protein 2B-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296088514|emb|CBI37505.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356495297|ref|XP_003516515.1| PREDICTED: MORC family CW-type zinc finger protein 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|115468994|ref|NP_001058096.1| Os06g0622000 [Oryza sativa Japonica Group] gi|51090841|dbj|BAD35369.1| Zinc finger CW-type coiled-coil domain protein 3-like [Oryza sativa Japonica Group] gi|113596136|dbj|BAF20010.1| Os06g0622000 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|222635901|gb|EEE66033.1| hypothetical protein OsJ_22008 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|357484261|ref|XP_003612418.1| MORC family CW-type zinc finger protein [Medicago truncatula] gi|355513753|gb|AES95376.1| MORC family CW-type zinc finger protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|218198566|gb|EEC80993.1| hypothetical protein OsI_23737 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|242096394|ref|XP_002438687.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] gi|241916910|gb|EER90054.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] | Back alignment and taxonomy information |
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| >gi|413954785|gb|AFW87434.1| hypothetical protein ZEAMMB73_569962 [Zea mays] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 726 | ||||||
| UNIPROTKB|F1MFY1 | 960 | MORC3 "Uncharacterized protein | 0.268 | 0.203 | 0.358 | 4.8e-39 | |
| ZFIN|ZDB-GENE-030131-1502 | 1079 | morc3a "MORC family CW-type zi | 0.261 | 0.176 | 0.325 | 8.8e-38 | |
| UNIPROTKB|F1PFJ7 | 939 | MORC3 "Uncharacterized protein | 0.265 | 0.205 | 0.344 | 1.2e-37 | |
| UNIPROTKB|F1SGX2 | 940 | MORC3 "Uncharacterized protein | 0.249 | 0.192 | 0.35 | 1.2e-36 | |
| UNIPROTKB|Q14149 | 939 | MORC3 "MORC family CW-type zin | 0.249 | 0.192 | 0.35 | 5.1e-36 | |
| UNIPROTKB|F1P2D9 | 926 | MORC3 "Uncharacterized protein | 0.316 | 0.248 | 0.282 | 1.4e-32 | |
| ZFIN|ZDB-GENE-040801-98 | 763 | morc3b "MORC family CW-type zi | 0.249 | 0.237 | 0.355 | 2e-32 | |
| MGI|MGI:1922996 | 928 | Morc4 "microrchidia 4" [Mus mu | 0.250 | 0.196 | 0.345 | 9.5e-32 | |
| RGD|1559905 | 928 | Morc4 "MORC family CW-type zin | 0.272 | 0.213 | 0.324 | 1.4e-29 | |
| UNIPROTKB|F1P705 | 898 | MORC4 "Uncharacterized protein | 0.253 | 0.204 | 0.301 | 2.7e-29 |
| UNIPROTKB|F1MFY1 MORC3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 4.8e-39, Sum P(2) = 4.8e-39
Identities = 76/212 (35%), Positives = 119/212 (56%)
Query: 241 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 300
P +L T +H+ W F A+AEL+DN+ D +I I+ K D L+ D+G+
Sbjct: 26 PKFLHTNSTSHT-WPFSAVAELIDNAYDPDVNAKQIWID----KTVINDCICLTFTDNGN 80
Query: 301 GMTHQDVVRMTYFGHKQP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 359
GMT + +M FG + +D +G +G GFK+G+MRLGKDA+V T+ +S S+ FL
Sbjct: 81 GMTSDKLHKMLSFGFSEKVTMNDHVPVGLYGNGFKSGSMRLGKDAMVFTKNEESMSVGFL 140
Query: 360 SQS-LNQGK-DNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNK--YLIG 415
SQ+ L K +++ +PIVS+ ++ LD+ +S+A+ L +I E S F+K L+
Sbjct: 141 SQTYLEVIKAEHVVVPIVSFNKQDIRQVLDST-ESKAS----LAAILEHSLFSKEQQLLA 195
Query: 416 EKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWD 447
E + K GT+I IWNL + S ++D
Sbjct: 196 ELDAIIGKK--GTRIIIWNLRSYKSATEFDFD 225
|
|
| ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PFJ7 MORC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SGX2 MORC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q14149 MORC3 "MORC family CW-type zinc finger protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P2D9 MORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040801-98 morc3b "MORC family CW-type zinc finger 3b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| MGI|MGI:1922996 Morc4 "microrchidia 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1559905 Morc4 "MORC family CW-type zinc finger 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P705 MORC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 726 | |||
| pfam13589 | 134 | pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr | 6e-22 | |
| pfam07496 | 50 | pfam07496, zf-CW, CW-type Zinc Finger | 3e-11 | |
| COG0323 | 638 | COG0323, MutL, DNA mismatch repair enzyme (predict | 7e-07 | |
| TIGR00585 | 312 | TIGR00585, mutl, DNA mismatch repair protein MutL | 1e-06 | |
| PRK00095 | 617 | PRK00095, mutL, DNA mismatch repair protein; Revie | 3e-06 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 2e-04 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 3e-04 | |
| PRK05218 | 613 | PRK05218, PRK05218, heat shock protein 90; Provisi | 5e-04 | |
| COG0326 | 623 | COG0326, HtpG, Molecular chaperone, HSP90 family [ | 0.002 |
| >gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 6e-22
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 256 FGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGH 315
AIAEL+DNS DA AT ++ISI+ + +SI D+G GM+++++ G
Sbjct: 4 EDAIAELIDNSIDADATNVKISIDPD------RGEDGISIEDNGGGMSYEELRNALKLGR 57
Query: 316 KQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 374
+ + + +GR G+G K ++ LG+ V ++ S L + ++P
Sbjct: 58 SSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGESSTLTLDLDDIDKEGEWDLPE 117
Query: 375 V 375
+
Sbjct: 118 L 118
|
This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134 |
| >gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger | Back alignment and domain information |
|---|
| >gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 726 | |||
| KOG1845 | 775 | consensus MORC family ATPases [Cell cycle control, | 99.97 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 99.94 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 99.92 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 99.9 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 99.89 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 99.88 | |
| KOG1845 | 775 | consensus MORC family ATPases [Cell cycle control, | 99.88 | |
| KOG0019 | 656 | consensus Molecular chaperone (HSP90 family) [Post | 99.87 | |
| KOG0020 | 785 | consensus Endoplasmic reticulum glucose-regulated | 99.86 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 99.68 | |
| PF07496 | 50 | zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi | 99.57 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 99.38 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 99.32 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 99.19 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 99.13 | |
| KOG1979 | 694 | consensus DNA mismatch repair protein - MLH1 famil | 98.89 | |
| KOG1978 | 672 | consensus DNA mismatch repair protein - MLH2/PMS1/ | 98.88 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 98.67 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 98.66 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 98.63 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 98.47 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 98.31 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 98.28 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 98.2 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 98.19 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 98.17 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 98.16 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 98.14 | |
| KOG1977 | 1142 | consensus DNA mismatch repair protein - MLH3 famil | 97.86 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 97.32 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 97.29 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 97.23 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 97.17 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 97.12 | |
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, t | 96.99 | |
| PHA02569 | 602 | 39 DNA topoisomerase II large subunit; Provisional | 96.98 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 96.88 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 96.85 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 96.75 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 96.71 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 96.71 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 96.68 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 96.66 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 96.64 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 96.6 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 96.57 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 96.51 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 96.45 | |
| PTZ00109 | 903 | DNA gyrase subunit b; Provisional | 96.42 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 96.35 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 96.29 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 96.27 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 96.26 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 96.17 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 96.14 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 96.02 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 95.78 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 95.76 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 95.6 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 95.6 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 95.51 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 95.36 | |
| KOG0787 | 414 | consensus Dehydrogenase kinase [Signal transductio | 95.19 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 95.16 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 95.15 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 95.06 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 94.98 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 94.87 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 94.7 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 94.69 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 94.19 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 94.11 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 93.73 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 93.69 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 93.38 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 93.35 | |
| PRK13557 | 540 | histidine kinase; Provisional | 93.32 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 93.16 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 93.11 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 93.03 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 92.73 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 92.32 | |
| COG0643 | 716 | CheA Chemotaxis protein histidine kinase and relat | 90.83 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 90.65 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 90.46 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 90.21 | |
| PF07744 | 119 | SPOC: SPOC domain; InterPro: IPR012921 Spen (split | 90.2 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 89.95 | |
| COG2972 | 456 | Predicted signal transduction protein with a C-ter | 88.74 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 88.61 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 86.61 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 85.58 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 82.94 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 80.91 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 80.15 |
| >KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=302.70 Aligned_cols=412 Identities=21% Similarity=0.248 Sum_probs=279.5
Q ss_pred eeccCCCCceeeecCHHHHHHhhccccCCHHHHHHHHHHccccc---CCCccEEEEEEcccccCCCCcCEEEEE-----e
Q 004874 226 VKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII-----D 297 (726)
Q Consensus 226 ~~~~~~~~~~~~~v~pk~L~slstsh~~~pf~ALaELIDNA~DA---gAt~V~I~I~~~~d~~~~~~~~~L~I~-----D 297 (726)
+.+.+.++-.++++||+|||+++|+| +|.++|++||||||+|. +++.+.|+ .+ +...+.....++|. |
T Consensus 119 ~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd--~I-~p~~d~~i~a~~v~~~~~s~ 194 (775)
T KOG1845|consen 119 VIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVD--YI-NPVMDIFIRALVVQLKRISD 194 (775)
T ss_pred ceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEee--ee-cccccccceeEEeeccceec
Confidence 35555556699999999999999999 79999999999999998 45664443 21 22222224555655 7
Q ss_pred CCCCCCHHhHHhhhhcccCCCCCCCCCccccccceeeeecccccCeEEEEEeeC------CCcceEEEEeeec--CCCce
Q 004874 298 DGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN--QGKDN 369 (726)
Q Consensus 298 NG~GMt~eeL~~~l~FG~S~K~~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~------g~~si~~ls~Sf~--eG~~~ 369 (726)
||+||.++-+..++.+|++.+. +....+||||+||+++.|++|.+++|++|.. .++++++++++|+ ++.++
T Consensus 195 ~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d 273 (775)
T KOG1845|consen 195 DGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRD 273 (775)
T ss_pred cccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCc
Confidence 7999999999999999998875 4568999999999999999999999999943 2568999999995 57889
Q ss_pred EEecC----ccCCCC---CcEEEEEecCccchhhHHhH-----HHHHhhCCCCchh--HHHHh-h----------ccC-C
Q 004874 370 LEIPI----VSYYRK---GQFMELDTVVQSEATAKYNL-----KSIKEFSPFNKYL--IGEKA-G----------LFQ-D 423 (726)
Q Consensus 370 i~VPi----~~~e~~---GT~I~l~lk~~se~~~~~~L-----e~I~KYSpF~s~p--I~e~~-~----------~~~-~ 423 (726)
+++|+ ...+.. -..|.. +... .|..++ +.+.+|+||.+.. +.+.. . ++. .
T Consensus 274 ~iv~~~~i~~~~e~~~~~~~~i~~--~s~~--~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~ 349 (775)
T KOG1845|consen 274 FIVPMRLIKMDYEKSDQLWQGILY--KSGV--DWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIM 349 (775)
T ss_pred eeEecchhhhhhhcccccccceee--cccc--ccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhc
Confidence 99999 544431 122222 2111 233333 3499999999952 22200 0 011 3
Q ss_pred CcCCcEEEEEccccC--CCc-eeEeeeCCCCCC-C----cccc-cceeeccccccCCCccccceeeehhhhhccccce--
Q 004874 424 KCTGTQIYIWNLDQW--GSN-YCLEWDNGLNGG-S----SFHQ-GDILIRSRRIRSRPGQISQKVRSRPLAKSLNKTC-- 492 (726)
Q Consensus 424 ~~~GTrIIIyNLr~~--~~~-~ELDF~td~~~~-~----S~~~-~dI~ir~~r~~~r~~q~~~kVk~r~iak~L~~~~-- 492 (726)
..+||.+|+||+++| ..+ .|+||+.+.+.- + +++. ..|.+...+...+....++++.+..+....+++.
T Consensus 350 ~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~ 429 (775)
T KOG1845|consen 350 NKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPWTYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEI 429 (775)
T ss_pred cCCCceeeeechhhhcccccceeeccccCcccccccchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHH
Confidence 579999999999655 333 999999986311 1 1111 3454443333332233344444444433333221
Q ss_pred eeeccc-------ccceEEEEEeeeccccccc-cceEEEEeechhhh----HHHhhccccccCCCCcceEEEEecccccc
Q 004874 493 VETGII-------MGKSAHLTLGRCQLEWEQM-NCGIFLYWHGRLIE----AYKRVGGMIHNGDTGRGVIGVIDVSDLMD 560 (726)
Q Consensus 493 ~~~~~~-------~~k~v~itfGfn~~~~~r~-~~G~~vYhkNRLIk----~y~rVg~ql~~~~~GrGVIGVvE~n~lv~ 560 (726)
.+.+.. --..+....||.+.++++. ..|++|||++|||+ ++||.++. .+..|+||++++++||
T Consensus 430 ~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~~n~--~~s~~~~~~~il~~n~--- 504 (775)
T KOG1845|consen 430 LYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKIDNA--TGSLGQAVIPILVGNF--- 504 (775)
T ss_pred hcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhcccceeeecCC--Cccccccccceecccc---
Confidence 111111 1123445678888886664 67999999999999 99999998 5689999999999984
Q ss_pred CCCCcccccCCCcCccCchhHHHHHHHHhHHHHHHHhhhccccccccc---cCCCC-----CCCceecCccchhhccCCC
Q 004874 561 EGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKD---GALYK-----PDQEWVQCNKCRKWRMLDP 632 (726)
Q Consensus 561 ~p~g~v~PtHNKQdFe~t~~y~rLe~~Lg~~l~~YW~~~~~~l~~~~~---~~~~~-----~~~~WVQCD~ClKWR~LP~ 632 (726)
++|+|++|+|++|-.-++++.++.++++.||..+++.++.... ...+. ....=-+| .+=
T Consensus 505 -----~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~~~~~~~~~~Ke~~~~~~---~~~----- 571 (775)
T KOG1845|consen 505 -----VETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQKERESTTTVVKEEKPENN---HLS----- 571 (775)
T ss_pred -----cccCCCccccccccccccchhhhhhcccccccccccccCccchhhhhhhcccceeecccccccc---hhc-----
Confidence 4689999999999999999999999999999999988865411 11100 01111122 111
Q ss_pred CCCCCCCCCCceecCCC---CCCCCCCCcccccCC
Q 004874 633 GFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAG 664 (726)
Q Consensus 633 ~~~~~~lp~~W~C~mNp---~~~sC~~pEe~~~~~ 664 (726)
......--..|+|..++ .++.|+-+-...+.+
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (775)
T KOG1845|consen 572 SSKRTQRRKSTGRAISVAVEKFNLRSGPNGRGQID 606 (775)
T ss_pred chhccccccccccccccchhhhccccccCCcCCcc
Confidence 11223456789999998 467777666555544
|
|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PHA02569 39 DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 7e-12
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 617 EWVQC--NKCRKWRMLDPGFDTKSLPVEWFCYMK--PFEGLCDLPEQK 660
WVQC C KWR L D LP W C CD+PE+
Sbjct: 17 VWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEET 64
|
| >2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100 | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Length = 272 | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Length = 236 | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Length = 228 | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Length = 264 | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269 | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Length = 256 | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Length = 220 | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Length = 666 | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 677 | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Length = 235 | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Length = 281 | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Length = 624 | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Length = 559 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 726 | |||
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 99.93 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 99.93 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural g | 99.93 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 99.91 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 99.9 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 99.9 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 99.9 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 99.89 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 99.89 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 99.89 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 99.88 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 99.87 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 99.86 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 99.86 | |
| 2e61_A | 69 | Zinc finger CW-type PWWP domain protein 1; ZF-CW d | 99.65 | |
| 2l7p_A | 100 | Histone-lysine N-methyltransferase ASHH2; CW-domai | 99.56 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 99.5 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 99.46 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 99.41 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 99.31 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 98.85 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 98.55 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 98.53 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 98.51 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 98.5 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 98.48 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 98.45 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 98.35 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 98.32 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 98.24 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 98.21 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 98.09 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 97.87 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 97.86 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduct | 97.69 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein | 97.65 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 97.35 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.34 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 97.25 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 97.23 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 97.21 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 97.2 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding dom | 97.2 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 97.2 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, t | 97.19 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 97.16 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.15 | |
| 1i58_A | 189 | Chemotaxis protein CHEA; beta-alpha sandwich, sign | 97.14 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 97.09 | |
| 3sl2_A | 177 | Sensor histidine kinase YYCG; ATP binding, intact | 97.02 | |
| 3zxo_A | 129 | Redox sensor histidine kinase response regulator; | 96.98 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine | 96.97 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 96.72 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 96.6 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 96.58 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, t | 96.35 | |
| 3zxq_A | 124 | Hypoxia sensor histidine kinase response regulato; | 95.93 | |
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 95.34 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 92.68 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 92.45 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 89.65 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 89.63 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 87.94 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 85.45 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 84.92 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-si | 84.15 |
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-27 Score=238.41 Aligned_cols=174 Identities=22% Similarity=0.278 Sum_probs=138.3
Q ss_pred CceeeecC-HHHHHHhhccccCCHHHHHHHHHHcccccCC----------------CccEEEEEEcccccCCCCcCEEEE
Q 004874 233 EKNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSI 295 (726)
Q Consensus 233 ~~~~~~v~-pk~L~slstsh~~~pf~ALaELIDNA~DAgA----------------t~V~I~I~~~~d~~~~~~~~~L~I 295 (726)
....|+++ .+.|..++.+.|+....||||||+||+||.+ ..+.|.|.. + .+..+|+|
T Consensus 17 e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d----~~~~~L~I 90 (239)
T 3nmq_A 17 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP--N----PQERTLTL 90 (239)
T ss_dssp EEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE--E----TTTTEEEE
T ss_pred eeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE--e----CCccEEEE
Confidence 34557776 4677888999999999999999999999964 245666652 2 24689999
Q ss_pred EeCCCCCCHHhHHhhhh-cccCCC--------CCCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCC
Q 004874 296 IDDGHGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG 366 (726)
Q Consensus 296 ~DNG~GMt~eeL~~~l~-FG~S~K--------~~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG 366 (726)
.|||+||++++|.+.|+ ++.|.+ ...+...|||||+||||++| +|++|+|.||+++. .++.|.+ ++
T Consensus 91 ~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~~ 165 (239)
T 3nmq_A 91 VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--SA 165 (239)
T ss_dssp EECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CS
T ss_pred EeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--CC
Confidence 99999999999987764 444321 12467899999999999988 99999999999764 4788988 56
Q ss_pred CceEEecCcc--CCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHHH
Q 004874 367 KDNLEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 417 (726)
Q Consensus 367 ~~~i~VPi~~--~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e~ 417 (726)
.+.++|...+ ...+||+|+||++++. +|+.+++++. |+|||.|+.+||..+
T Consensus 166 ~g~fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~ 220 (239)
T 3nmq_A 166 GGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLY 220 (239)
T ss_dssp TTEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEEC
T ss_pred CCcEEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEe
Confidence 6678775443 3368999999999875 7888899876 999999999998753
|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* | Back alignment and structure |
|---|
| >2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A | Back alignment and structure |
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| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
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| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} | Back alignment and structure |
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| >3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
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| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} | Back alignment and structure |
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| >3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
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| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 726 | ||||
| d1h7sa2 | 203 | d.122.1.2 (A:29-231) DNA mismatch repair protein P | 7e-07 | |
| d1b63a2 | 218 | d.122.1.2 (A:-2-216) DNA mismatch repair protein M | 8e-05 |
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: DNA gyrase/MutL, N-terminal domain domain: DNA mismatch repair protein PMS2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 7e-07
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 258 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 317
A+ ELV+NS DA AT +++ ++ G D ++ + D+G G+ ++ +T H
Sbjct: 10 AVKELVENSLDAGATNIDLKLK-----DYGVD--LIEVSDNGCGVEEENFEGLTLKHHTS 62
Query: 318 PDADDPNRIGRFGVGFKTGAM 338
+ + GF+ A+
Sbjct: 63 KIQEFADLTQVETFGFRGEAL 83
|
| >d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 726 | |||
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.94 | |
| d2gqpa1 | 227 | HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | 99.94 | |
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 99.45 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 99.37 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 99.17 | |
| d1bxda_ | 161 | Histidine kinase domain of the osmosensor EnvZ {Es | 98.0 | |
| d1gkza2 | 193 | Branched-chain alpha-ketoacid dehydrogenase kinase | 97.67 | |
| d1id0a_ | 146 | Histidine kinase PhoQ domain {Escherichia coli [Ta | 97.67 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 97.58 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 97.58 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 97.58 | |
| d2c2aa2 | 161 | Sensor histidine kinase TM0853 {Thermotoga maritim | 97.48 | |
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 97.44 | |
| d1y8oa2 | 125 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 97.39 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 97.34 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 97.04 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 96.72 | |
| d1th8a_ | 139 | Anti-sigma factor spoIIab {Bacillus stearothermoph | 96.39 | |
| d1r62a_ | 156 | Nitrogen regulation protein NtrB, C-terminal domai | 96.09 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 81.69 |
| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Heat shock protein 90, HSP90, N-terminal domain domain: HSP90 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.7e-28 Score=240.88 Aligned_cols=167 Identities=24% Similarity=0.294 Sum_probs=132.4
Q ss_pred HHHHHHhhccccCCHHHHHHHHHHcccccCC----------------CccEEEEEEcccccCCCCcCEEEEEeCCCCCCH
Q 004874 241 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 304 (726)
Q Consensus 241 pk~L~slstsh~~~pf~ALaELIDNA~DAgA----------------t~V~I~I~~~~d~~~~~~~~~L~I~DNG~GMt~ 304 (726)
.+.|+.+..+.|+.+..+|||||+||.||.+ ....|.|.. + .+..+|+|.|||+||+.
T Consensus 11 ~~ll~ll~~slYs~~~iflRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~--d----~~~~~l~I~DnGiGMt~ 84 (208)
T d1uyla_ 11 AQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP--N----KQDRTLTIVDTGIGMTK 84 (208)
T ss_dssp HHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE--E----TTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHhhcCCchHhHHHHHhhHHHHHHHHHHHhcCCchhccCCcccceEEee--c----CCccEEEEEcCCccccH
Confidence 3467777889999999999999999999932 334455542 2 35789999999999999
Q ss_pred HhHHhhhh-cccCCC--------CCCCCCccccccceeeeecccccCeEEEEEeeCCCcceEEEEeeecCCCceEEecCc
Q 004874 305 QDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV 375 (726)
Q Consensus 305 eeL~~~l~-FG~S~K--------~~~d~~~IGqFGvGFKSA~mrLG~~V~V~TK~~g~~si~~ls~Sf~eG~~~i~VPi~ 375 (726)
+++.+.|+ +|.|.+ ...+.+.||||||||||+|| ++++|.|.||+.+.....|.|.+ .+...+..+..
T Consensus 85 ~el~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~Fm-Vad~v~V~sk~~~~~~~~~~~~~--~~~~~~~~~~~ 161 (208)
T d1uyla_ 85 ADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDDEQYAWESSA--GGSFTVRTDTG 161 (208)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTSCCEEEEECS--TTEEEEEECCS
T ss_pred HHHHhhcccccccchHHHHHhhhhccchhhhhhcccceEEeee-ccCceEEEEecCCcchheeeecc--CCCceEEeccc
Confidence 99999886 555532 23467899999999999999 99999999998887655555543 44445555555
Q ss_pred cCCCCCcEEEEEecCcc-chhhHHhHHH-HHhhCCCCchhHHH
Q 004874 376 SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (726)
Q Consensus 376 ~~e~~GT~I~l~lk~~s-e~~~~~~Le~-I~KYSpF~s~pI~e 416 (726)
....+||+|+|+++++. +|+.++.|+. |+|||.|+++||..
T Consensus 162 ~~~~~GT~I~L~lk~d~~efl~~~~i~~likkys~fi~~PI~l 204 (208)
T d1uyla_ 162 EPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL 204 (208)
T ss_dssp SCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEE
T ss_pred ccCCCCcEEEEEeCCChHHHcCHHHHHHHHHHHhcccCcCeEe
Confidence 55679999999999876 7888888876 99999999999863
|
| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|